Mon Aug 9 15:55:02 UTC 2021 I: starting to build r-cran-rstan/buster/amd64 on jenkins on '2021-08-09 15:54' Mon Aug 9 15:55:02 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_24/14331/console.log Mon Aug 9 15:55:02 UTC 2021 I: Downloading source for buster/r-cran-rstan=2.18.2-1 --2021-08-09 15:55:02-- http://deb.debian.org/debian/pool/main/r/r-cran-rstan/r-cran-rstan_2.18.2-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2221 (2.2K) Saving to: ‘r-cran-rstan_2.18.2-1.dsc’ 0K .. 100% 29.3M=0s 2021-08-09 15:55:02 (29.3 MB/s) - ‘r-cran-rstan_2.18.2-1.dsc’ saved [2221/2221] Mon Aug 9 15:55:02 UTC 2021 I: r-cran-rstan_2.18.2-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: r-cran-rstan Binary: r-cran-rstan Architecture: any Version: 2.18.2-1 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://cran.r-project.org/package=rstan Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-cran-rstan Vcs-Git: https://salsa.debian.org/r-pkg-team/r-cran-rstan.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper (>= 11~), dh-r, r-base-dev, r-cran-ggplot2 (>= 2.0.0), r-cran-stanheaders (>= 2.18.0), r-cran-inline, r-cran-gridextra, r-cran-rcpp (>= 0.12.0), r-cran-loo, r-cran-pkgbuild, r-cran-rcppeigen (>= 0.3.3.3.0), r-cran-bh Package-List: r-cran-rstan deb gnu-r optional arch=any Checksums-Sha1: 1594a2ec5aed71a022199e6f7a81c63471a8a13a 692976 r-cran-rstan_2.18.2.orig.tar.xz ead40d69e40f2ca94e243f3518b2087ab1e2b64f 2840 r-cran-rstan_2.18.2-1.debian.tar.xz Checksums-Sha256: cca9ddf253e582f0640e0da52b1dfcd64a6ff414553f5fba18ace2c27f71af96 692976 r-cran-rstan_2.18.2.orig.tar.xz 14e4fd7ee9c67223e265104bd27886babbb7a3210623e4d9b078ad0296cc2103 2840 r-cran-rstan_2.18.2-1.debian.tar.xz Files: 2358bc9ad11b107b23f5befb75041ccf 692976 r-cran-rstan_2.18.2.orig.tar.xz 369b9bca8f3d475b6ebc851534b1df87 2840 r-cran-rstan_2.18.2-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlv7yggRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFJkQ/+PrxSYHfr/wXomfFpKw4M3h6JUxGPyhIU QjROWIsWRX3M3L86qZq4LkWXjC974LC75EseDeq5oNDNHiLITb93D+luOyVZCMsT stMRlh+SJe96vYxh1aEObmCpk32RSNRJUxJzg9Q50kMWP61v/1Cc9066Hp7E730k U/l9t0xscAF4ko9r2E9C9i08yEAOyXXLOdixOsFNONUyg4W2Kb5Gu2pSH3OU4p7w 0gMa2+GMBb2m/IETMHsHJJxoX1Zq95qKt+fj8BI2Pd5foY/u9hrqADz1IT6GjRSu aBlbYDsDbWPpN9PTI9UGOqFF9uWG62wGQLoNq9tnj/BsfqzdCKXupn8G0atK3K2c /9nAxN1mA8vjerF+x5iWI5itW8DxgWwQ6xICl61p+b/bKHCIVnpB9vyhWDiG8V2K 4nfYIuvEdkS4VERPPrH5utHZCINGVMT6+DF9j80yj6rwiY5F1CKOsGqdA9UxCtaE 0L+HbQDdxSEwdiaPBnooVcr48oxhYakANjnxaKujcttWgsovTttpk0AvZsytgvVM DGIjHRVQ5wJFWZEuSaKBvAw2WR6RveX+FnlOsPLTS6XB7gH4bOxggyBsYXY1hkTh Y1scTY+1Q1FblMx8te6aLFamLBTIVLRVqhGczI76ogoYSMU+9uT6KbGw3X7XhamL /fELwTSjcuk= =uP+g -----END PGP SIGNATURE----- Mon Aug 9 15:55:02 UTC 2021 I: Checking whether the package is not for us Mon Aug 9 15:55:02 UTC 2021 I: Starting 1st build on remote node ionos15-amd64.debian.net. Mon Aug 9 15:55:02 UTC 2021 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Mon Aug 9 16:09:54 UTC 2021 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 11 10:18:04 -12 2022 I: pbuilder-time-stamp: 1662934684 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-cran-rstan_2.18.2-1.dsc] I: copying [./r-cran-rstan_2.18.2.orig.tar.xz] I: copying [./r-cran-rstan_2.18.2-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun Nov 25 22:25:12 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-cran-rstan_2.18.2-1.dsc dpkg-source: info: extracting r-cran-rstan in r-cran-rstan-2.18.2 dpkg-source: info: unpacking r-cran-rstan_2.18.2.orig.tar.xz dpkg-source: info: unpacking r-cran-rstan_2.18.2-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/28956/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='a3bfa718e5f841bbacae759146167211' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='28956' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ddvULWEu85/pbuilderrc_KNLz --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ddvULWEu85/b1 --logfile b1/build.log r-cran-rstan_2.18.2-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 5.10.0-0.bpo.8-amd64 #1 SMP Debian 5.10.46-2~bpo10+1 (2021-07-22) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 9 02:47 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/28956/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), dh-r, r-base-dev, r-cran-ggplot2 (>= 2.0.0), r-cran-stanheaders (>= 2.18.0), r-cran-inline, r-cran-gridextra, r-cran-rcpp (>= 0.12.0), r-cran-loo, r-cran-pkgbuild, r-cran-rcppeigen (>= 0.3.3.3.0), r-cran-bh dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2 (>= 2.0.0); however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-stanheaders (>= 2.18.0); however: Package r-cran-stanheaders is not installed. pbuilder-satisfydepends-dummy depends on r-cran-inline; however: Package r-cran-inline is not installed. pbuilder-satisfydepends-dummy depends on r-cran-gridextra; however: Package r-cran-gridextra is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcpp (>= 0.12.0); however: Package r-cran-rcpp is not installed. pbuilder-satisfydepends-dummy depends on r-cran-loo; however: Package r-cran-loo is not installed. pbuilder-satisfydepends-dummy depends on r-cran-pkgbuild; however: Package r-cran-pkgbuild is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcppeigen (>= 0.3.3.3.0); however: Package r-cran-rcppeigen is not installed. pbuilder-satisfydepends-dummy depends on r-cran-bh; however: Package r-cran-bh is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gfortran{a} gfortran-8{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost1.67-dev{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libcroco3{a} libcurl4{a} libdatrie1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-8-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libice6{a} libicu-dev{a} libicu63{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} libldap-common{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnghttp2-14{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpcre16-3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libreadline-dev{a} libreadline7{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libssl1.1{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff5{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp6{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} littler{a} lsb-base{a} m4{a} man-db{a} openssl{a} pkg-config{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-cran-assertthat{a} r-cran-backports{a} r-cran-bh{a} r-cran-callr{a} r-cran-cli{a} r-cran-colorspace{a} r-cran-crayon{a} r-cran-desc{a} r-cran-digest{a} r-cran-fansi{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gridextra{a} r-cran-gtable{a} r-cran-inline{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-lazyeval{a} r-cran-littler{a} r-cran-loo{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-mgcv{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-pillar{a} r-cran-pkgbuild{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plyr{a} r-cran-prettyunits{a} r-cran-processx{a} r-cran-ps{a} r-cran-r6{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcppeigen{a} r-cran-reshape2{a} r-cran-rlang{a} r-cran-rprojroot{a} r-cran-scales{a} r-cran-stanheaders{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-tibble{a} r-cran-utf8{a} r-cran-viridislite{a} r-cran-withr{a} readline-common{a} sensible-utils{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc curl devscripts krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-cran-abind r-cran-bit64 r-cran-cliapp r-cran-data.table r-cran-dbi r-cran-domc r-cran-dplyr r-cran-hexbin r-cran-hms r-cran-htmltools r-cran-htmlwidgets r-cran-knitr r-cran-lubridate r-cran-mapproj r-cran-mockery r-cran-mockr r-cran-rsqlite r-cran-runit r-cran-sp r-cran-testthat r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 183 newly installed, 0 to remove and 0 not upgraded. Need to get 136 MB of archives. After unpacking 492 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u6 [1539 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1d-0+deb10u6 [844 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 dctrl-tools amd64 2.24-3 [103 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 zip amd64 3.0-11+b1 [234 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 unzip amd64 6.0-23+deb10u2 [172 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 libpaper1 amd64 1.1.28 [21.3 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 libpaper-utils amd64 1.1.28 [18.0 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u2 [380 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 libcairo2 amd64 1.16.0-4+deb10u1 [688 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u1 [65.8 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u1 [122 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u1 [369 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u1 [158 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u1 [69.1 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u1 [106 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u6 [90.0 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u6 [224 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 libcurl4 amd64 7.64.0-4+deb10u2 [332 kB] Get: 78 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 x11-common all 1:7.7+19 [251 kB] Get: 80 http://deb.debian.org/debian buster/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get: 81 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get: 82 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get: 83 http://deb.debian.org/debian buster/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get: 84 http://deb.debian.org/debian buster/main amd64 libfribidi0 amd64 1.0.5-3.1+deb10u1 [63.7 kB] Get: 85 http://deb.debian.org/debian buster/main amd64 libthai-data all 0.1.28-2 [170 kB] Get: 86 http://deb.debian.org/debian buster/main amd64 libdatrie1 amd64 0.2.12-2 [39.3 kB] Get: 87 http://deb.debian.org/debian buster/main amd64 libthai0 amd64 0.1.28-2 [54.1 kB] Get: 88 http://deb.debian.org/debian buster/main amd64 libpango-1.0-0 amd64 1.42.4-8~deb10u1 [186 kB] Get: 89 http://deb.debian.org/debian buster/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get: 90 http://deb.debian.org/debian buster/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get: 91 http://deb.debian.org/debian buster/main amd64 libpangoft2-1.0-0 amd64 1.42.4-8~deb10u1 [68.3 kB] Get: 92 http://deb.debian.org/debian buster/main amd64 libpangocairo-1.0-0 amd64 1.42.4-8~deb10u1 [55.7 kB] Get: 93 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get: 94 http://deb.debian.org/debian buster/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 95 http://deb.debian.org/debian buster/main amd64 libtcl8.6 amd64 8.6.9+dfsg-2 [1005 kB] Get: 96 http://deb.debian.org/debian buster/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get: 97 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2+deb10u1 [261 kB] Get: 98 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u2 [271 kB] Get: 99 http://deb.debian.org/debian buster/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get: 100 http://deb.debian.org/debian buster/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get: 101 http://deb.debian.org/debian buster/main amd64 libtk8.6 amd64 8.6.9-2 [768 kB] Get: 102 http://deb.debian.org/debian buster/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB] Get: 103 http://deb.debian.org/debian buster/main amd64 r-base-core amd64 3.5.2-1 [23.9 MB] Get: 104 http://deb.debian.org/debian buster/main amd64 libgfortran-8-dev amd64 8.3.0-6 [616 kB] Get: 105 http://deb.debian.org/debian buster/main amd64 gfortran-8 amd64 8.3.0-6 [9375 kB] Get: 106 http://deb.debian.org/debian buster/main amd64 gfortran amd64 4:8.3.0-1 [1432 B] Get: 107 http://deb.debian.org/debian buster/main amd64 libblas-dev amd64 3.8.0-2 [154 kB] Get: 108 http://deb.debian.org/debian buster/main amd64 liblapack-dev amd64 3.8.0-2 [2140 kB] Get: 109 http://deb.debian.org/debian buster/main amd64 libncurses-dev amd64 6.1+20181013-2+deb10u2 [333 kB] Get: 110 http://deb.debian.org/debian buster/main amd64 libncurses5-dev amd64 6.1+20181013-2+deb10u2 [948 B] Get: 111 http://deb.debian.org/debian buster/main amd64 libreadline-dev amd64 7.0-5 [133 kB] Get: 112 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo-dev amd64 1:1.5.2-2+deb10u1 [208 kB] Get: 113 http://deb.debian.org/debian buster/main amd64 libjpeg-dev all 1:1.5.2-2+deb10u1 [57.7 kB] Get: 114 http://deb.debian.org/debian buster/main amd64 libpcre16-3 amd64 2:8.39-12 [259 kB] Get: 115 http://deb.debian.org/debian buster/main amd64 libpcre32-3 amd64 2:8.39-12 [250 kB] Get: 116 http://deb.debian.org/debian buster/main amd64 libpcrecpp0v5 amd64 2:8.39-12 [152 kB] Get: 117 http://deb.debian.org/debian buster/main amd64 libpcre3-dev amd64 2:8.39-12 [650 kB] Get: 118 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1 [214 kB] Get: 119 http://deb.debian.org/debian buster/main amd64 libpng-dev amd64 1.6.36-6 [300 kB] Get: 120 http://deb.debian.org/debian buster/main amd64 libbz2-dev amd64 1.0.6-9.2~deb10u1 [30.2 kB] Get: 121 http://deb.debian.org/debian buster/main amd64 liblzma-dev amd64 5.2.4-1 [210 kB] Get: 122 http://deb.debian.org/debian buster/main amd64 icu-devtools amd64 63.1-6+deb10u1 [189 kB] Get: 123 http://deb.debian.org/debian buster/main amd64 libicu-dev amd64 63.1-6+deb10u1 [9186 kB] Get: 124 http://deb.debian.org/debian buster/main amd64 libxmuu1 amd64 2:1.1.2-2+b3 [23.9 kB] Get: 125 http://deb.debian.org/debian buster/main amd64 xauth amd64 1:1.0.10-1 [40.3 kB] Get: 126 http://deb.debian.org/debian buster/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get: 127 http://deb.debian.org/debian buster/main amd64 r-base-dev all 3.5.2-1 [4480 B] Get: 128 http://deb.debian.org/debian buster/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get: 129 http://deb.debian.org/debian buster/main amd64 libswitch-perl all 2.17-2 [20.5 kB] Get: 130 http://deb.debian.org/debian buster/main amd64 dh-r all 20190121 [35.1 kB] Get: 131 http://deb.debian.org/debian buster/main amd64 libboost1.67-dev amd64 1.67.0-13+deb10u1 [8388 kB] Get: 132 http://deb.debian.org/debian buster/main amd64 libboost-dev amd64 1.67.0.1 [3864 B] Get: 133 http://deb.debian.org/debian buster/main amd64 r-cran-littler amd64 0.3.6-1 [308 kB] Get: 134 http://deb.debian.org/debian buster/main amd64 littler all 0.3.6-1 [13.6 kB] Get: 135 http://deb.debian.org/debian buster/main amd64 r-cran-assertthat all 0.2.0-2 [54.4 kB] Get: 136 http://deb.debian.org/debian buster/main amd64 r-cran-backports amd64 1.1.3-1 [55.6 kB] Get: 137 http://deb.debian.org/debian buster/main amd64 r-cran-bh all 1.66.0-1 [5072 B] Get: 138 http://deb.debian.org/debian buster/main amd64 r-cran-ps amd64 1.3.0-1 [210 kB] Get: 139 http://deb.debian.org/debian buster/main amd64 r-cran-r6 all 2.4.0-1 [75.2 kB] Get: 140 http://deb.debian.org/debian buster/main amd64 r-cran-processx amd64 3.2.1-1 [181 kB] Get: 141 http://deb.debian.org/debian buster/main amd64 r-cran-callr all 3.1.1-3 [243 kB] Get: 142 http://deb.debian.org/debian buster/main amd64 r-cran-crayon all 1.3.4-4 [750 kB] Get: 143 http://deb.debian.org/debian buster/main amd64 r-cran-cli all 1.0.1-1 [519 kB] Get: 144 http://deb.debian.org/debian buster/main amd64 r-cran-colorspace amd64 1.4-0+dfsg-1 [1580 kB] Get: 145 http://deb.debian.org/debian buster/main amd64 r-cran-rprojroot all 1.3-2-2 [96.9 kB] Get: 146 http://deb.debian.org/debian buster/main amd64 r-cran-desc all 1.2.0-2 [290 kB] Get: 147 http://deb.debian.org/debian buster/main amd64 r-cran-digest amd64 0.6.18-1 [136 kB] Get: 148 http://deb.debian.org/debian buster/main amd64 r-cran-fansi amd64 0.4.0-1 [339 kB] Get: 149 http://deb.debian.org/debian buster/main amd64 r-cran-gtable all 0.2.0-3 [93.6 kB] Get: 150 http://deb.debian.org/debian buster/main amd64 r-cran-lazyeval amd64 0.2.1-3 [138 kB] Get: 151 http://deb.debian.org/debian buster/main amd64 r-cran-mass amd64 7.3-51.1-1 [1100 kB] Get: 152 http://deb.debian.org/debian buster/main amd64 r-cran-lattice amd64 0.20-38-1 [1121 kB] Get: 153 http://deb.debian.org/debian buster/main amd64 r-cran-nlme amd64 3.1.137-1+b3 [2223 kB] Get: 154 http://deb.debian.org/debian buster/main amd64 r-cran-matrix amd64 1.2-15-1 [3421 kB] Get: 155 http://deb.debian.org/debian buster/main amd64 r-cran-mgcv amd64 1.8-27-1 [2665 kB] Get: 156 http://deb.debian.org/debian buster/main amd64 r-cran-pkgkitten all 0.1.4-2 [22.4 kB] Get: 157 http://deb.debian.org/debian buster/main amd64 r-cran-rcpp amd64 1.0.0-1 [3381 kB] Get: 158 http://deb.debian.org/debian buster/main amd64 r-cran-plyr amd64 1.8.4-2 [813 kB] Get: 159 http://deb.debian.org/debian buster/main amd64 r-cran-glue amd64 1.3.0-1 [92.0 kB] Get: 160 http://deb.debian.org/debian buster/main amd64 r-cran-magrittr all 1.5-5 [152 kB] Get: 161 http://deb.debian.org/debian buster/main amd64 r-cran-stringi amd64 1.2.4-2 [8702 kB] Get: 162 http://deb.debian.org/debian buster/main amd64 r-cran-stringr all 1.4.0-1 [198 kB] Get: 163 http://deb.debian.org/debian buster/main amd64 r-cran-reshape2 amd64 1.4.3-2 [114 kB] Get: 164 http://deb.debian.org/debian buster/main amd64 r-cran-rlang amd64 0.3.1-2 [1083 kB] Get: 165 http://deb.debian.org/debian buster/main amd64 r-cran-labeling all 0.3-3 [61.4 kB] Get: 166 http://deb.debian.org/debian buster/main amd64 r-cran-munsell all 0.5.0-1 [235 kB] Get: 167 http://deb.debian.org/debian buster/main amd64 r-cran-rcolorbrewer all 1.1-2-2 [54.3 kB] Get: 168 http://deb.debian.org/debian buster/main amd64 r-cran-viridislite all 0.3.0-3 [59.2 kB] Get: 169 http://deb.debian.org/debian buster/main amd64 r-cran-scales amd64 1.0.0-2 [546 kB] Get: 170 http://deb.debian.org/debian buster/main amd64 r-cran-utf8 amd64 1.1.4-1+b1 [131 kB] Get: 171 http://deb.debian.org/debian buster/main amd64 r-cran-pillar all 1.3.1-1 [203 kB] Get: 172 http://deb.debian.org/debian buster/main amd64 r-cran-pkgconfig all 2.0.2-1 [19.4 kB] Get: 173 http://deb.debian.org/debian buster/main amd64 r-cran-tibble amd64 2.0.1-1 [656 kB] Get: 174 http://deb.debian.org/debian buster/main amd64 r-cran-withr all 2.1.2-3 [152 kB] Get: 175 http://deb.debian.org/debian buster/main amd64 r-cran-ggplot2 all 3.1.0-1 [3740 kB] Get: 176 http://deb.debian.org/debian buster/main amd64 r-cran-gridextra all 2.3-2 [1023 kB] Get: 177 http://deb.debian.org/debian buster/main amd64 r-cran-inline all 0.3.15-2 [123 kB] Get: 178 http://deb.debian.org/debian buster/main amd64 r-cran-matrixstats amd64 0.54.0-1 [618 kB] Get: 179 http://deb.debian.org/debian buster/main amd64 r-cran-loo all 2.0.0-2 [766 kB] Get: 180 http://deb.debian.org/debian buster/main amd64 r-cran-prettyunits all 1.0.2-3 [32.4 kB] Get: 181 http://deb.debian.org/debian buster/main amd64 r-cran-pkgbuild all 1.0.2-1 [130 kB] Get: 182 http://deb.debian.org/debian buster/main amd64 r-cran-rcppeigen amd64 0.3.3.5.0-1 [1361 kB] Get: 183 http://deb.debian.org/debian buster/main amd64 r-cran-stanheaders amd64 2.18.1-1 [713 kB] Fetched 136 MB in 2s (64.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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Setting up gfortran (4:8.3.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libthai0:amd64 (0.1.28-2) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 137 added, 0 removed; done. Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up libfreetype6:amd64 (2.9.1-3+deb10u2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u1) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... 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Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/r-cran-rstan-2.18.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package r-cran-rstan dpkg-buildpackage: info: source version 2.18.2-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules build make: 'build' is up to date. fakeroot debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install -O--buildsystem=R I: R Package: rstan Version: 2.18.2 I: Building using R version 3.5.2-1 I: R API version: r-api-3.5 I: Using built-time from d/changelog: Mon, 26 Nov 2018 11:10:19 +0100 mkdir -p /build/r-cran-rstan-2.18.2/debian/r-cran-rstan/usr/lib/R/site-library R CMD INSTALL -l /build/r-cran-rstan-2.18.2/debian/r-cran-rstan/usr/lib/R/site-library --clean . "--built-timestamp='Mon, 26 Nov 2018 11:10:19 +0100'" * installing *source* package 'rstan' ... ** package 'rstan' successfully unpacked and MD5 sums checked ** libs make[1]: Entering directory '/build/r-cran-rstan-2.18.2/src' g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c chains.cpp -o chains.o In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:392, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/mean.hpp:5, from chains.cpp:19: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct is_arithmetic<__m128> { enum { value = true }; }; ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] template<> struct is_arithmetic<__m128i> { enum { value = true }; }; ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct is_arithmetic<__m128d> { enum { value = true }; }; ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; ^ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:392, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/mean.hpp:5, from chains.cpp:19: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] struct palign_impl ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] struct palign_impl ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] struct palign_impl ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:374, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/mean.hpp:5, from chains.cpp:19: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct conj_helper { \ ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct conj_helper { \ ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct conj_helper { \ ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct conj_helper { \ ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:367, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/mean.hpp:5, from chains.cpp:19: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:224:7: required from 'struct Eigen::internal::traits >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__vector(4) float'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:434, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/mean.hpp:5, from chains.cpp:19: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:232:7: required from 'class Eigen::Quaternion' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:367, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/mean.hpp:5, from chains.cpp:19: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:224:7: required from 'struct Eigen::internal::traits >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:434, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/mean.hpp:5, from chains.cpp:19: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:232:7: required from 'class Eigen::Quaternion' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:367, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/mean.hpp:5, from chains.cpp:19: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:23:29: required from 'struct Eigen::internal::traits >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:18:8: required from 'struct Eigen::internal::traits, 0, Eigen::Stride<0, 0> > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:54: required from 'struct Eigen::internal::accessors_level, 0, Eigen::Stride<0, 0> > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:113:75: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:92:64: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:434, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/mean.hpp:5, from chains.cpp:19: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:24:30: required from 'struct Eigen::internal::traits, 0, Eigen::Stride<0, 0> > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:32:54: required from 'struct Eigen::internal::accessors_level, 0, Eigen::Stride<0, 0> > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/ForwardDeclarations.h:113:75: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:92:64: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:92:64: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:93:52: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 1>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 3>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase, 0, Eigen::Stride<0, 0> > > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from 'class Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:67:23: required from 'void stan::math::autocovariance(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:94:17: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> > >, 2>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase, 0, Eigen::Stride<0, 0> > > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from 'class Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:67:36: required from 'void stan::math::autocovariance(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:94:17: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::Array >, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::Array > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase, const Eigen::Array > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, const Eigen::Array >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:38:28: required from 'struct Eigen::internal::traits, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:67:36: required from 'void stan::math::autocovariance(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:94:17: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:67:36: required from 'void stan::math::autocovariance(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:94:17: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, Eigen::Dense>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:67:57: required from 'void stan::math::autocovariance(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:94:17: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:67:23: required from 'void stan::math::autocovariance(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:94:17: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Array.h:45:7: required from 'class Eigen::Array' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:67:63: required from 'void stan::math::autocovariance(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:94:17: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:67:63: required from 'void stan::math::autocovariance(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:94:17: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, 1, false>, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, 1>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, 1, false>, 3>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, 1, false> >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, 1, false> >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, 1, false>, 0>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, -1, 1, false>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/VectorBlock.h:56:47: required from 'class Eigen::VectorBlock, -1>' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:120:27: required from 'void stan::math::autocorrelation(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:66:18: required from 'void stan::math::autocovariance(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:94:17: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, const Eigen::Matrix, -1, 1> >, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >, const Eigen::Matrix, -1, 1> > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >, const Eigen::Matrix, -1, 1> > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:94:7: required from 'class Eigen::CwiseUnaryOpImpl >, const Eigen::Matrix, -1, 1>, Eigen::Dense>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryOp.h:55:7: required from 'class Eigen::CwiseUnaryOp >, const Eigen::Matrix, -1, 1> >' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:125:11: required from 'void stan::math::autocorrelation(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:66:18: required from 'void stan::math::autocovariance(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:94:17: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, Eigen::Block, -1, 1>, -1, 1, false> >, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase >, Eigen::Block, -1, 1>, -1, 1, false> >, 1>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase >, Eigen::Block, -1, 1>, -1, 1, false> >, 3>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >, Eigen::Block, -1, 1>, -1, 1, false> > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >, Eigen::Block, -1, 1>, -1, 1, false> > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:101:7: required from 'class Eigen::CwiseUnaryViewImpl >, Eigen::Block, -1, 1>, -1, 1, false>, Eigen::Dense>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseUnaryView.h:58:7: required from 'class Eigen::CwiseUnaryView >, Eigen::Block, -1, 1>, -1, 1, false> >' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:133:30: required from 'void stan::math::autocorrelation(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:66:18: required from 'void stan::math::autocovariance(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:94:17: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, Eigen::Block, -1, 1>, -1, 1, false> > >, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase >, Eigen::Block, -1, 1>, -1, 1, false> > >, 1>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase >, Eigen::Block, -1, 1>, -1, 1, false> > >, 3>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >, Eigen::Block, -1, 1>, -1, 1, false> > > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase >, Eigen::Block, -1, 1>, -1, 1, false> > > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayWrapper.h:42:7: required from 'class Eigen::ArrayWrapper >, Eigen::Block, -1, 1>, -1, 1, false> > >' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:133:38: required from 'void stan::math::autocorrelation(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:66:18: required from 'void stan::math::autocovariance(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:94:17: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, const Eigen::ArrayWrapper >, Eigen::Block, -1, 1>, -1, 1, false> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, const Eigen::ArrayWrapper >, Eigen::Block, -1, 1>, -1, 1, false> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/ArrayBase.h:39:34: required from 'class Eigen::ArrayBase, const Eigen::ArrayWrapper >, Eigen::Block, -1, 1>, -1, 1, false> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:148:7: required from 'class Eigen::CwiseBinaryOpImpl, const Eigen::ArrayWrapper >, Eigen::Block, -1, 1>, -1, 1, false> > >, const Eigen::CwiseNullaryOp, const Eigen::Array >, Eigen::Dense>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseBinaryOp.h:77:7: required from 'class Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper >, Eigen::Block, -1, 1>, -1, 1, false> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:133:38: required from 'void stan::math::autocorrelation(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:66:18: required from 'void stan::math::autocovariance(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:94:17: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/FFT:242:36: required from 'void Eigen::FFT::fwd(Eigen::MatrixBase&, const Eigen::MatrixBase&, Eigen::FFT::Index) [with InputDerived = Eigen::Matrix; ComplexDerived = Eigen::Matrix, -1, 1>; T_Scalar = double; T_Impl = Eigen::default_fft_impl; Eigen::FFT::Index = long int]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:123:3: required from 'void stan::math::autocorrelation(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:66:18: required from 'void stan::math::autocovariance(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:94:17: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, -1, -1, false>, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, 1>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, -1, -1, false>, 3>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, -1, -1, false> >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, -1, -1, false> >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, -1, -1, false>, 0>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Block.h:103:81: required from 'class Eigen::Block, -1, -1, false>' /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/FFT:245:40: required from 'void Eigen::FFT::fwd(Eigen::MatrixBase&, const Eigen::MatrixBase&, Eigen::FFT::Index) [with InputDerived = Eigen::Matrix; ComplexDerived = Eigen::Matrix, -1, 1>; T_Scalar = double; T_Impl = Eigen::default_fft_impl; Eigen::FFT::Index = long int]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:123:3: required from 'void stan::math::autocorrelation(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:66:18: required from 'void stan::math::autocovariance(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:94:17: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Matrix >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:327:30: required from 'Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Eigen::DenseBase::Scalar = double]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:501:10: required from 'Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Matrix]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:119:3: required from 'void stan::math::autocorrelation(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:66:18: required from 'void stan::math::autocovariance(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:94:17: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Matrix >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:327:30: required from 'Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Eigen::DenseBase::Scalar = double]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:518:31: required from 'Derived& Eigen::PlainObjectBase::setZero(Eigen::Index) [with Derived = Eigen::Matrix; Eigen::Index = long int]' /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/FFT:244:11: required from 'void Eigen::FFT::fwd(Eigen::MatrixBase&, const Eigen::MatrixBase&, Eigen::FFT::Index) [with InputDerived = Eigen::Matrix; ComplexDerived = Eigen::Matrix, -1, 1>; T_Scalar = double; T_Impl = Eigen::default_fft_impl; Eigen::FFT::Index = long int]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:123:3: required from 'void stan::math::autocorrelation(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:66:18: required from 'void stan::math::autocovariance(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:94:17: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl::Scalar = double]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = double]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:468:10: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::mean() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = double]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:67:36: required from 'void stan::math::autocovariance(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:94:17: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] return internal::first_aligned::alignment),Derived>(m); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; Eigen::Index = long int]': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > > >; Eigen::internal::redux_impl::Scalar = double]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; typename Eigen::internal::traits::Scalar = double]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::CwiseUnaryOp, const Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > > >; typename Eigen::internal::traits::Scalar = double]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:67:23: required from 'void stan::math::autocovariance(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:94:17: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:440, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/mean.hpp:5, from chains.cpp:19: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, 1, false> >': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:736:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >; Functor = Eigen::internal::assign_op]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, 1, false>; SrcXprType = Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >; Functor = Eigen::internal::assign_op; Weak = void]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >; Func = Eigen::internal::assign_op]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block, -1, 1, false>; Src = Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: required from 'Derived& Eigen::MatrixBase::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::CwiseBinaryOp, const Eigen::ArrayWrapper, 0, Eigen::Stride<0, 0> > >, const Eigen::CwiseNullaryOp, const Eigen::Array > >; Derived = Eigen::Block, -1, 1, false>]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:120:27: required from 'void stan::math::autocorrelation(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:66:18: required from 'void stan::math::autocovariance(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:94:17: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:434, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/mean.hpp:5, from chains.cpp:19: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase >, 1>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase >, 3>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, Eigen::Dense>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:225:24: required from 'Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>& Eigen::Matrix<_Scalar, _Rows, _Cols, _Options, _MaxRows, _MaxCols>::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Matrix; _Scalar = double; int _Rows = 1; int _Cols = -1; int _Options = 1; int _MaxRows = 1; int _MaxCols = -1]' /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/FFT:247:15: required from 'void Eigen::FFT::fwd(Eigen::MatrixBase&, const Eigen::MatrixBase&, Eigen::FFT::Index) [with InputDerived = Eigen::Matrix; ComplexDerived = Eigen::Matrix, -1, 1>; T_Scalar = double; T_Impl = Eigen::default_fft_impl; Eigen::FFT::Index = long int]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:123:3: required from 'void stan::math::autocorrelation(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:66:18: required from 'void stan::math::autocovariance(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:94:17: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:440, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/mean.hpp:5, from chains.cpp:19: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h: In instantiation of 'struct Eigen::internal::evaluator, -1, -1, false> >': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:736:20: required from 'void Eigen::internal::call_dense_assignment_loop(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Matrix; Functor = Eigen::internal::assign_op]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:879:31: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Functor&) [with DstXprType = Eigen::Block, -1, -1, false>; SrcXprType = Eigen::Matrix; Functor = Eigen::internal::assign_op; Weak = void]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:836:49: required from 'void Eigen::internal::call_assignment_no_alias(Dst&, const Src&, const Func&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Matrix; Func = Eigen::internal::assign_op]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:804:27: required from 'void Eigen::internal::call_assignment(Dst&, const Src&, const Func&, typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Matrix; Func = Eigen::internal::assign_op; typename Eigen::internal::enable_if<(! Eigen::internal::evaluator_assume_aliasing::value), void*>::type = void*]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/AssignEvaluator.h:782:18: required from 'void Eigen::internal::call_assignment(Dst&, const Src&) [with Dst = Eigen::Block, -1, -1, false>; Src = Eigen::Matrix]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Assign.h:66:28: required from 'Derived& Eigen::MatrixBase::operator=(const Eigen::DenseBase&) [with OtherDerived = Eigen::Matrix; Derived = Eigen::Block, -1, -1, false>]' /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/FFT:245:40: required from 'void Eigen::FFT::fwd(Eigen::MatrixBase&, const Eigen::MatrixBase&, Eigen::FFT::Index) [with InputDerived = Eigen::Matrix; ComplexDerived = Eigen::Matrix, -1, 1>; T_Scalar = double; T_Impl = Eigen::default_fft_impl; Eigen::FFT::Index = long int]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocorrelation.hpp:123:3: required from 'void stan::math::autocorrelation(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:66:18: required from 'void stan::math::autocovariance(const Eigen::MatrixBase&, Eigen::MatrixBase&, Eigen::FFT&) [with T = double; DerivedA = Eigen::Map, 0, Eigen::Stride<0, 0> >; DerivedB = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/autocovariance.hpp:94:17: required from 'void stan::math::autocovariance(const std::vector&, std::vector&) [with T = double]' chains.cpp:245:43: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:960:8: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] enum { ^ g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c init.cpp -o init.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__ast_def.cpp -o lang__ast_def.o In file included from /usr/lib/R/site-library/StanHeaders/include/src/stan/lang/ast_def.cpp:119, from lang__ast_def.cpp:18: /usr/lib/R/site-library/StanHeaders/include/src/stan/lang/ast/sigs/function_signatures_def.hpp: In constructor 'stan::lang::function_signatures::function_signatures()': /usr/lib/R/site-library/StanHeaders/include/src/stan/lang/ast/sigs/function_signatures_def.hpp:485:5: note: variable tracking size limit exceeded with -fvar-tracking-assignments, retrying without function_signatures::function_signatures() { ^~~~~~~~~~~~~~~~~~~ g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__grammars__bare_type_grammar_inst.cpp -o lang__grammars__bare_type_grammar_inst.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__grammars__expression07_grammar_inst.cpp -o lang__grammars__expression07_grammar_inst.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__grammars__expression_grammar_inst.cpp -o lang__grammars__expression_grammar_inst.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__grammars__functions_grammar_inst.cpp -o lang__grammars__functions_grammar_inst.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__grammars__indexes_grammar_inst.cpp -o lang__grammars__indexes_grammar_inst.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__grammars__program_grammar_inst.cpp -o lang__grammars__program_grammar_inst.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__grammars__semantic_actions.cpp -o lang__grammars__semantic_actions.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__grammars__statement_2_grammar_inst.cpp -o lang__grammars__statement_2_grammar_inst.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__grammars__statement_grammar_inst.cpp -o lang__grammars__statement_grammar_inst.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__grammars__term_grammar_inst.cpp -o lang__grammars__term_grammar_inst.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__grammars__var_deccls_grammar_inst.cpp -o lang__grammars__var_deccls_grammar_inst.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c lang__grammars__whitespace_grammar_inst.cpp -o lang__grammars__whitespace_grammar_inst.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c misc.cpp -o misc.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c pointer-tools.cpp -o pointer-tools.o g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c sparse_extractors.cpp -o sparse_extractors.o In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:392, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:5, from sparse_extractors.cpp:2: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:60:39: warning: ignoring attributes on template argument '__m128' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct is_arithmetic<__m128> { enum { value = true }; }; ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:61:40: warning: ignoring attributes on template argument '__m128i' {aka '__vector(2) long long int'} [-Wignored-attributes] template<> struct is_arithmetic<__m128i> { enum { value = true }; }; ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:62:40: warning: ignoring attributes on template argument '__m128d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct is_arithmetic<__m128d> { enum { value = true }; }; ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:161:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct unpacket_traits { typedef float type; enum {size=4, alignment=Aligned16}; typedef Packet4f half; }; ^ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:392, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:5, from sparse_extractors.cpp:2: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:162:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct unpacket_traits { typedef double type; enum {size=2, alignment=Aligned16}; typedef Packet2d half; }; ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:163:43: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] template<> struct unpacket_traits { typedef int type; enum {size=4, alignment=Aligned16}; typedef Packet4i half; }; ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:718:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] struct palign_impl ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:741:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] struct palign_impl ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:764:35: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] struct palign_impl ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:778:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:783:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/PacketMath.h:790:34: warning: ignoring attributes on template argument 'Eigen::internal::Packet4i' {aka '__vector(2) long long int'} [-Wignored-attributes] ptranspose(PacketBlock& kernel) { ^ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:374, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:5, from sparse_extractors.cpp:2: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct conj_helper { \ ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet4f' {aka '__vector(4) float'} [-Wignored-attributes] template<> struct conj_helper { \ ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:232:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet2cf,Packet4f) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:15:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct conj_helper { \ ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/Default/ConjHelper.h:22:70: warning: ignoring attributes on template argument 'Eigen::internal::Packet2d' {aka '__vector(2) double'} [-Wignored-attributes] template<> struct conj_helper { \ ^ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/arch/SSE/Complex.h:417:1: note: in expansion of macro 'EIGEN_MAKE_CONJ_HELPER_CPLX_REAL' EIGEN_MAKE_CONJ_HELPER_CPLX_REAL(Packet1cd,Packet2d) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:367, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:5, from sparse_extractors.cpp:2: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:224:7: required from 'struct Eigen::internal::traits >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:24:46: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(4) float>::half' {aka '__vector(4) float'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:434, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:5, from sparse_extractors.cpp:2: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:232:7: required from 'class Eigen::Quaternion' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:27:3: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(4) float'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:367, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:5, from sparse_extractors.cpp:2: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:224:7: required from 'struct Eigen::internal::traits >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:88:47: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:434, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:5, from sparse_extractors.cpp:2: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:46:50: required from 'class Eigen::QuaternionBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/Quaternion.h:232:7: required from 'class Eigen::Quaternion' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Geometry/arch/Geometry_SSE.h:92:3: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/SparseCore:37, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Sparse:26, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6, from sparse_extractors.cpp:2: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase >': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from 'class Eigen::SparseMatrix' /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/IterativeSolvers/ConstrainedConjGrad.h:61:25: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:367, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:5, from sparse_extractors.cpp:2: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) long long int>::half' {aka '__vector(2) long long int'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:434, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:5, from sparse_extractors.cpp:2: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:168:29: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase >, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase >, 1>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase >, 3>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:115:37: required from 'class Eigen::TransposeImpl, Eigen::Dense>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose >' /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:178:72: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' /usr/lib/R/site-library/RcppEigen/include/unsupported/Eigen/src/KroneckerProduct/KroneckerTensorProduct.h:179:36: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/SparseCore:37, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Sparse:26, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:6, from sparse_extractors.cpp:2: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase >': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:96:7: required from 'class Eigen::SparseMatrix' sparse_extractors.cpp:11:51: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h: In instantiation of 'class Eigen::SparseMatrixBase > >': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:36:7: required from 'class Eigen::SparseCompressedBase > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:22:9: required from 'class Eigen::internal::SparseTransposeImpl, 1024>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:45:37: required from 'class Eigen::TransposeImpl, Eigen::Sparse>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Transpose.h:52:37: required from 'class Eigen::Transpose >' sparse_extractors.cpp:11:64: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrixBase.h:47:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:367, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:5, from sparse_extractors.cpp:2: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h: In instantiation of 'struct Eigen::internal::find_best_packet': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:22:57: required from 'struct Eigen::internal::traits >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' sparse_extractors.cpp:12:44: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:44: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] bool Stop = Size==Dynamic || (Size%unpacket_traits::size)==0 || is_same::half>::value> ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:170:83: warning: ignoring attributes on template argument 'Eigen::internal::unpacket_traits<__vector(2) double>::half' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/util/XprHelper.h:188:88: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] typedef typename find_best_packet_helper::type>::type type; ^~~~ In file included from /usr/lib/R/site-library/RcppEigen/include/Eigen/Core:434, from /usr/lib/R/site-library/RcppEigen/include/Eigen/Dense:1, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/Eigen.hpp:4, from /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_u.hpp:5, from sparse_extractors.cpp:2: /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 1>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 3>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/PlainObjectBase.h:98:7: required from 'class Eigen::PlainObjectBase >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Matrix.h:178:7: required from 'class Eigen::Matrix' sparse_extractors.cpp:12:44: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] >::type PacketReturnType; ^~~~~~~~~~~~~~~~ /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from 'struct Eigen::internal::evaluator > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1390:8: required from 'struct Eigen::internal::evaluator >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseTranspose.h:58:63: required from 'struct Eigen::internal::unary_evaluator >, Eigen::internal::IteratorBased, double>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CoreEvaluators.h:90:8: required from 'struct Eigen::internal::evaluator > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:682:103: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Transpose >; _Scalar = double; int _Options = 1; _StorageIndex = int]' sparse_extractors.cpp:11:65: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:300:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 1>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:551:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 3>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:215:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 1>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1083:12: required from 'Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Transpose >; _Scalar = double; int _Options = 1; _StorageIndex = int]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:684:15: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Transpose >; _Scalar = double; int _Options = 1; _StorageIndex = int]' sparse_extractors.cpp:11:65: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:478:7: required from 'class Eigen::DenseCoeffsBase, 0, Eigen::Stride<0, 0> >, 2>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, 0, Eigen::Stride<0, 0> > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, 0, Eigen::Stride<0, 0> > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MapBase.h:37:34: required from 'class Eigen::MapBase, 0, Eigen::Stride<0, 0> >, 0>' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Map.h:94:79: required from 'class Eigen::Map, 0, Eigen::Stride<0, 0> >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:32: required from 'Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_w.hpp:23:39: required from 'const Eigen::Matrix stan::math::csr_extract_w(const Eigen::SparseMatrix&) [with T = double]' sparse_extractors.cpp:12:76: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Matrix >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:327:30: required from 'Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Matrix; Eigen::DenseBase::Scalar = double]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:501:10: required from 'Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Matrix]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_w.hpp:24:3: required from 'const Eigen::Matrix stan::math::csr_extract_w(const Eigen::SparseMatrix&) [with T = double]' sparse_extractors.cpp:12:76: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, Eigen::Matrix >, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseBase.h:41:34: required from 'class Eigen::DenseBase, Eigen::Matrix > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/MatrixBase.h:48:34: required from 'class Eigen::MatrixBase, Eigen::Matrix > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:60:7: required from 'class Eigen::CwiseNullaryOp, Eigen::Matrix >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:327:30: required from 'Derived& Eigen::DenseBase::setConstant(const Scalar&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::DenseBase::Scalar = int]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/CwiseNullaryOp.h:501:10: required from 'Derived& Eigen::DenseBase::setZero() [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1083:5: required from 'Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Transpose >; _Scalar = double; int _Options = 1; _StorageIndex = int]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:684:15: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Transpose >; _Scalar = double; int _Options = 1; _StorageIndex = int]' sparse_extractors.cpp:11:65: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'class Eigen::DenseCoeffsBase, 0>': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:298:80: required from 'struct Eigen::internal::evaluator > >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1390:8: required from 'struct Eigen::internal::evaluator >' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:79:51: required from 'void Eigen::internal::assign_sparse_to_sparse(DstXprType&, const SrcXprType&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::Transpose >]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:132:28: required from 'static void Eigen::internal::Assignment::run(DstXprType&, const SrcXprType&, const Eigen::internal::assign_op&) [with DstXprType = Eigen::SparseMatrix; SrcXprType = Eigen::Transpose >; Functor = Eigen::internal::assign_op; typename SrcXprType::Scalar = double; typename DstXprType::Scalar = double]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseAssign.h:38:16: required from 'Derived& Eigen::SparseMatrixBase::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Transpose >; Derived = Eigen::SparseMatrix]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:1124:27: required from 'Eigen::SparseMatrix<_Scalar, _Options, _StorageIndex>& Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::operator=(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Transpose >; _Scalar = double; int _Options = 1; _StorageIndex = int]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseMatrix.h:684:15: required from 'Eigen::SparseMatrix<_Scalar, _Flags, _StorageIndex>::SparseMatrix(const Eigen::SparseMatrixBase&) [with OtherDerived = Eigen::Transpose >; _Scalar = double; int _Options = 1; _StorageIndex = int]' sparse_extractors.cpp:11:65: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:55:30: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) double'} [-Wignored-attributes] /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h: In instantiation of 'Eigen::Index Eigen::internal::first_default_aligned(const Eigen::DenseBase&) [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; Eigen::Index = long int]': /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:225:63: required from 'static Eigen::internal::redux_impl::Scalar Eigen::internal::redux_impl::run(const Derived&, const Func&) [with Func = Eigen::internal::scalar_sum_op; Derived = Eigen::internal::redux_evaluator, 0, Eigen::Stride<0, 0> > >; Eigen::internal::redux_impl::Scalar = int]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:418:56: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::redux(const Func&) const [with BinaryOp = Eigen::internal::scalar_sum_op; Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/Redux.h:453:73: required from 'typename Eigen::internal::traits::Scalar Eigen::DenseBase::sum() const [with Derived = Eigen::Map, 0, Eigen::Stride<0, 0> >; typename Eigen::internal::traits::Scalar = int]' /usr/lib/R/site-library/RcppEigen/include/Eigen/src/SparseCore/SparseCompressedBase.h:65:36: required from 'Eigen::Index Eigen::SparseCompressedBase::nonZeros() const [with Derived = Eigen::SparseMatrix; Eigen::Index = long int]' /usr/lib/R/site-library/StanHeaders/include/stan/math/prim/mat/fun/csr_extract_w.hpp:23:39: required from 'const Eigen::Matrix stan::math::csr_extract_w(const Eigen::SparseMatrix&) [with T = double]' sparse_extractors.cpp:12:76: required from here /usr/lib/R/site-library/RcppEigen/include/Eigen/src/Core/DenseCoeffsBase.h:650:34: warning: ignoring attributes on template argument 'Eigen::internal::packet_traits::type' {aka '__vector(2) long long int'} [-Wignored-attributes] return internal::first_aligned::alignment),Derived>(m); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -std=gnu++14 -I"/usr/share/R/include" -DNDEBUG -I"../inst/include" -I"`"/usr/lib/R/bin/Rscript" --vanilla -e "cat(system.file('include', 'src', package = 'StanHeaders'))"`" -DBOOST_DISABLE_ASSERTS -DBOOST_PHOENIX_NO_VARIADIC_EXPRESSION -I"/usr/lib/R/site-library/Rcpp/include" -I"/usr/lib/R/site-library/RcppEigen/include" -I"/usr/lib/R/site-library/BH/include" -I"/usr/lib/R/site-library/StanHeaders/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c stanc.cpp -o stanc.o g++ -std=gnu++14 -shared -L/usr/lib/R/lib -Wl,-z,relro -o rstan.so chains.o init.o lang__ast_def.o lang__grammars__bare_type_grammar_inst.o lang__grammars__expression07_grammar_inst.o lang__grammars__expression_grammar_inst.o lang__grammars__functions_grammar_inst.o lang__grammars__indexes_grammar_inst.o lang__grammars__program_grammar_inst.o lang__grammars__semantic_actions.o lang__grammars__statement_2_grammar_inst.o lang__grammars__statement_grammar_inst.o lang__grammars__term_grammar_inst.o lang__grammars__var_deccls_grammar_inst.o lang__grammars__whitespace_grammar_inst.o misc.o pointer-tools.o sparse_extractors.o stanc.o -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/r-cran-rstan-2.18.2/src' make[1]: Entering directory '/build/r-cran-rstan-2.18.2/src' make[1]: Leaving directory '/build/r-cran-rstan-2.18.2/src' installing to /build/r-cran-rstan-2.18.2/debian/r-cran-rstan/usr/lib/R/site-library/rstan/libs ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices *** copying figures ** building package indices ** installing vignettes ** testing if installed package can be loaded * DONE (rstan) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 292. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 293. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 296. W: Ignoring specified R dependency: R (>= 3.4.0) I: Using r-cran-ggplot2 for Depends:ggplot2 (>= 2.0.0) I: Using r-cran-stanheaders for Depends:StanHeaders (>= 2.18.0) I: Using r-cran-runit for Suggests:RUnit I: Using r-cran-rcppeigen for Suggests:RcppEigen (>= 0.3.3.3.0) I: Using r-cran-bh for Suggests:BH (>= 1.66) I: Using r-cran-kernsmooth for Suggests:KernSmooth W: Cannot find a debian package for Suggests:shinystan (>= 2.3.0) I: Using r-cran-bayesplot for Suggests:bayesplot (>= 1.5.0) I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-cran-rstantools for Suggests:rstantools I: Using r-cran-rstudioapi for Suggests:rstudioapi I: Using r-cran-matrix for Suggests:Matrix I: Using r-cran-knitr for Suggests:knitr (>= 1.15.1) I: Using r-cran-inline for Imports:inline I: Using r-cran-gridextra for Imports:gridExtra (>= 2.0.0) I: Using r-cran-rcpp for Imports:Rcpp (>= 0.12.0) I: Using r-cran-loo for Imports:loo (>= 2.0.0) I: Using r-cran-pkgbuild for Imports:pkgbuild Create lintian-override for package-contains-documentation-outside-usr-share-doc due to debian/r-cran-rstan/usr/lib/R/site-library/rstan/doc/stanfit-objects.Rmd debian/r-cran-rstan/usr/lib/R/site-library/rstan/doc/rstan.Rmd debian/r-cran-rstan/usr/lib/R/site-library/rstan/doc/external.Rmd dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installinit -O--buildsystem=R dh_lintian -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_strip -O--buildsystem=R dh_makeshlibs -O--buildsystem=R dh_shlibdeps -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-cran-rstan' in '../r-cran-rstan_2.18.2-1_amd64.deb'. dpkg-deb: building package 'r-cran-rstan-dbgsym' in '../r-cran-rstan-dbgsym_2.18.2-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../r-cran-rstan_2.18.2-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/28956 and its subdirectories I: Current time: Sun Sep 11 10:32:54 -12 2022 I: pbuilder-time-stamp: 1662935574 Mon Aug 9 16:09:55 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Mon Aug 9 16:09:55 UTC 2021 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Mon Aug 9 17:19:41 UTC 2021 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Mon Aug 9 17:19:41 UTC 2021 I: r-cran-rstan_2.18.2-1_amd64.changes: Format: 1.8 Date: Mon, 26 Nov 2018 11:10:19 +0100 Source: r-cran-rstan Binary: r-cran-rstan r-cran-rstan-dbgsym Architecture: amd64 Version: 2.18.2-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Andreas Tille Description: r-cran-rstan - GNU R interface to Stan Changes: r-cran-rstan (2.18.2-1) unstable; urgency=medium . * Drop now unused override since dh-r cares for this * New upstream version * libboost-dev is now 1.67.0.1 thus r-cran-bh becomes usable again Checksums-Sha1: fdf9fa8e42e5e9531c3304637f16a7854350f06b 35492460 r-cran-rstan-dbgsym_2.18.2-1_amd64.deb a1ff37314a77d6c15b1d396b0feef818d56f5e6e 9491 r-cran-rstan_2.18.2-1_amd64.buildinfo 81aa25ef5621689a0c8b14aa605bd3514d9c41a9 1917152 r-cran-rstan_2.18.2-1_amd64.deb Checksums-Sha256: ef1356947abe3aca1a26975bbae19ddcdfd41a80580bcb4ffb4508eaa95772cf 35492460 r-cran-rstan-dbgsym_2.18.2-1_amd64.deb 3dc47573b36d541efbc7584f3f4e527e7041904592452c4eab4ab0985e95b04e 9491 r-cran-rstan_2.18.2-1_amd64.buildinfo 9d065fe20245f3883bf8981460c9a1376c8dc46d189f6b483ffd054e6f5915d1 1917152 r-cran-rstan_2.18.2-1_amd64.deb Files: ad8901ee6d40fcf336be11b449d43b15 35492460 debug optional r-cran-rstan-dbgsym_2.18.2-1_amd64.deb 6cab033a718ff0ff5fcbd232f01ecdfa 9491 gnu-r optional r-cran-rstan_2.18.2-1_amd64.buildinfo 3c6ce1ad7a1822d9735c4cdec72f86dc 1917152 gnu-r optional r-cran-rstan_2.18.2-1_amd64.deb Mon Aug 9 17:19:49 UTC 2021 I: diffoscope 180 will be used to compare the two builds: Traceback (most recent call last): File "/usr/lib/python3/dist-packages/diffoscope/main.py", line 746, in main sys.exit(run_diffoscope(parsed_args)) File "/usr/lib/python3/dist-packages/diffoscope/main.py", line 700, in run_diffoscope difference = compare_root_paths(path1, path2) File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/compare.py", line 69, in compare_root_paths difference = compare_files(file1, file2) File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/compare.py", line 125, in compare_files return file1.compare(file2, source) File "/usr/lib/python3/dist-packages/diffoscope/comparators/debian.py", line 240, in compare differences = super().compare(other, *args, **kwargs) File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/file.py", line 502, in compare difference = self._compare_using_details(other, source) File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/file.py", line 439, in _compare_using_details other.as_container, no_recurse=no_recurse File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/container.py", line 192, in compare_pair file1, file2, source=None, diff_content_only=no_recurse File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/compare.py", line 125, in compare_files return file1.compare(file2, source) File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/file.py", line 502, in compare difference = self._compare_using_details(other, source) File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/file.py", line 439, in _compare_using_details other.as_container, no_recurse=no_recurse File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/container.py", line 192, in compare_pair file1, file2, source=None, diff_content_only=no_recurse File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/compare.py", line 125, in compare_files return file1.compare(file2, source) File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/file.py", line 502, in compare difference = self._compare_using_details(other, source) File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/file.py", line 439, in _compare_using_details other.as_container, no_recurse=no_recurse File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/container.py", line 192, in compare_pair file1, file2, source=None, diff_content_only=no_recurse File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/compare.py", line 125, in compare_files return file1.compare(file2, source) File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/file.py", line 502, in compare difference = self._compare_using_details(other, source) File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/file.py", line 439, in _compare_using_details other.as_container, no_recurse=no_recurse File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/container.py", line 192, in compare_pair file1, file2, source=None, diff_content_only=no_recurse File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/compare.py", line 125, in compare_files return file1.compare(file2, source) File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/file.py", line 502, in compare difference = self._compare_using_details(other, source) File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/file.py", line 409, in _compare_using_details details.extend(self.compare_details(other, source)) File "/usr/lib/python3/dist-packages/diffoscope/comparators/rdata.py", line 171, in compare_details return [Difference.from_operation(RdbReader, a, b)] File "/usr/lib/python3/dist-packages/diffoscope/difference.py", line 270, in from_operation klass, path1, path2, *args, **kwargs File "/usr/lib/python3/dist-packages/diffoscope/difference.py", line 290, in from_operation_exc feeder1, operation1, excluded1 = operation_and_feeder(path1) File "/usr/lib/python3/dist-packages/diffoscope/difference.py", line 287, in operation_and_feeder operation.start() File "/usr/lib/python3/dist-packages/diffoscope/comparators/utils/command.py", line 52, in start stderr=subprocess.PIPE, File "/usr/lib/python3.7/subprocess.py", line 462, in run raise ValueError('stdin and input arguments may not both be used.') ValueError: stdin and input arguments may not both be used. # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.ddvULWEu85/r-cran-rstan_2.18.2-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.ddvULWEu85/r-cran-rstan_2.18.2-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.ddvULWEu85/r-cran-rstan_2.18.2-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.ddvULWEu85/b1/r-cran-rstan_2.18.2-1_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.ddvULWEu85/b2/r-cran-rstan_2.18.2-1_amd64.changes ## close_archive (total time: 0.000s) 0.000s 2 calls diffoscope.comparators.xz.XzContainer 0.000s 2 calls diffoscope.comparators.tar.TarContainer ## command (total time: 0.709s) 0.489s 6 calls xz 0.184s 5 calls diff 0.018s 2 calls cmp 0.017s 2 calls cmp (external) 0.001s 11 calls cmp (internal) 0.000s 3 calls Rscript ## compare_files (cumulative) (total time: 0.242s) 0.148s 1 call abc.XzFile 0.080s 1 call abc.TarFile 0.013s 1 call abc.Md5sumsFile ## container_extract (total time: 0.564s) 0.490s 6 calls diffoscope.comparators.xz.XzContainer 0.059s 148 calls diffoscope.comparators.deb.DebTarContainer 0.011s 8 calls diffoscope.comparators.deb.DebContainer 0.004s 6 calls diffoscope.comparators.tar.TarContainer ## has_same_content_as (total time: 0.021s) 0.010s 1 call abc.DebDataTarFile 0.009s 1 call abc.RdbFile 0.000s 2 calls abc.XzFile 0.000s 1 call abc.DebFile 0.000s 2 calls abc.TextFile 0.000s 1 call abc.TarFile 0.000s 2 calls abc.Md5sumsFile 0.000s 1 call abc.DotChangesFile ## main (total time: 0.020s) 0.020s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer ## recognizes (total time: 2.824s) 2.638s 10 calls diffoscope.comparators.binary.FilesystemFile 0.128s 552 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.047s 238 calls diffoscope.comparators.utils.archive.ArchiveMember 0.010s 48 calls diffoscope.comparators.debian.DebControlMember 0.000s 8 calls abc.DotChangesFile 0.000s 14 calls abc.Md5sumsFile Mon Aug 9 17:22:03 UTC 2021 E: r-cran-rstan failed to build reproducibly in buster on amd64. Mon Aug 9 17:22:03 UTC 2021 W: diffoscope 180 produced no output (which is strange). Mon Aug 9 17:22:07 UTC 2021 I: Submitting .buildinfo files to external archives: Mon Aug 9 17:22:07 UTC 2021 I: Submitting 12K b1/r-cran-rstan_2.18.2-1_amd64.buildinfo.asc Mon Aug 9 17:22:08 UTC 2021 I: Submitting 12K b2/r-cran-rstan_2.18.2-1_amd64.buildinfo.asc Mon Aug 9 17:22:09 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Aug 9 17:22:09 UTC 2021 I: Done submitting .buildinfo files. Mon Aug 9 17:22:09 UTC 2021 I: Removing signed r-cran-rstan_2.18.2-1_amd64.buildinfo.asc files: removed './b1/r-cran-rstan_2.18.2-1_amd64.buildinfo.asc' removed './b2/r-cran-rstan_2.18.2-1_amd64.buildinfo.asc' Mon Aug 9 17:22:11 UTC 2021 I: Artifacts from this build have been preserved. They will be available for 24h only, so download them now. WARNING: You shouldn't trust packages downloaded from this host, they can contain malware or the worst of your fears, packaged nicely in debian format. If you are aware of this and just want to use these artifacts to investigate why diffoscope 180 had issues, you can download the artifacts from the following location: https://tests.reproducible-builds.org/debian/artifacts/r00t-me/r-cran-rstan_buster_amd64_tmp-scWJw/