Mon Dec 14 03:20:23 UTC 2020 I: starting to build quorum/buster/amd64 on jenkins on '2020-12-14 03:20' Mon Dec 14 03:20:23 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_6/37626/console.log Mon Dec 14 03:20:23 UTC 2020 I: Downloading source for buster/quorum=1.1.1-2 --2020-12-14 03:20:23-- http://deb.debian.org/debian/pool/main/q/quorum/quorum_1.1.1-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1992 (1.9K) Saving to: ‘quorum_1.1.1-2.dsc’ 0K . 100% 99.2M=0s 2020-12-14 03:20:23 (99.2 MB/s) - ‘quorum_1.1.1-2.dsc’ saved [1992/1992] Mon Dec 14 03:20:23 UTC 2020 I: quorum_1.1.1-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: quorum Binary: quorum Architecture: any Version: 1.1.1-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/gmarcais/Quorum Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/quorum Vcs-Git: https://salsa.debian.org/med-team/quorum.git Build-Depends: debhelper (>= 11~), libjellyfish-2.0-dev (>= 2.2.6-1~), jellyfish (>= 2.2.6-1~), yaggo, pkg-config Package-List: quorum deb science optional arch=any Checksums-Sha1: a3524ae371080269a4d79ad2cc501ebd24bddf85 2277528 quorum_1.1.1.orig.tar.gz 560e2b27e37c7619c9fd4c8d651e6e19517b6282 5284 quorum_1.1.1-2.debian.tar.xz Checksums-Sha256: 0fb308d5b02f43e1e668a01b706aba7bbd61a7f24a4aab57d0261170d34a396a 2277528 quorum_1.1.1.orig.tar.gz daa4e63305ea920950124a9edc248805873b4d1ce42ac161b1dc12270b308384 5284 quorum_1.1.1-2.debian.tar.xz Files: 656be64da3b0837f4195aa9545b9b4b7 2277528 quorum_1.1.1.orig.tar.gz 362f1597f937f9423c55c15aeb3c34bf 5284 quorum_1.1.1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAluSjVoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFrVQ/9F4cKWUSSmDVrv6Ba0pxiDGeUkaBz4RwJ z0Iu+IPZIGgJOXhVwl1BnsJGBOpWqmlkBuYVqX1FenrYpexDhvkd2ev2dlewRW6Z B1ln1sjY5jJ5qmhEG5HS6Ja8f92NnNJZxadLNYMZ2mak8iALvPoFnJh64OfWzxao TDy1UneRNMcgumk12RRxWXU6tWvbDcsAjdEepSEn/qQ8W6VeiIq1iPwL8TgvS7O1 WxQU2fAC6y3+keV4vgwxpJP0AahIOU5hM7PltstECcCVcLRht4jhim10pz3iNlCn dLB7HMtQAdxBn6yweaRweN7DXB1vuvL+kNjSl7umpNjop/hYSK35+D0515OiH0wI vFBrNPVnTRd7C4KySCAsRE46n/wFfbViKujk3pM8ghFzG2sjb/GpS6RjxkvEAS46 fx85r85DeWa7dKiGxeD4NjygVrk3bdJF6Vjotx96j/9Q8yNIxwKTVFSM2bTgkO2M iyggzwAbAnb8NRF+KiMqlEDo+vo2/klxgzBYtZ31JLxbOmhLr56MR/cxmoM9GFpL ZqgkDkujhyimDEvxAO+FspOL7zdPCiIkAdtYtD/nmKUjeoUIddEiGPa0GMlXiS44 qNAvma+p82OZAkzq0Fln3lh40nUI8YJACAxQU3i7GWHONl14uzOnZDgliY06CTEl 4jpUvMj1xeA= =pHsK -----END PGP SIGNATURE----- Mon Dec 14 03:20:23 UTC 2020 I: Checking whether the package is not for us Mon Dec 14 03:20:23 UTC 2020 I: Starting 1st build on remote node ionos5-amd64.debian.net. Mon Dec 14 03:20:23 UTC 2020 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Mon Dec 14 03:24:01 UTC 2020 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Jan 15 21:43:43 -12 2022 I: pbuilder-time-stamp: 1642326223 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [quorum_1.1.1-2.dsc] I: copying [./quorum_1.1.1.orig.tar.gz] I: copying [./quorum_1.1.1-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Sep 7 02:38:18 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./quorum_1.1.1-2.dsc dpkg-source: info: extracting quorum in quorum-1.1.1 dpkg-source: info: unpacking quorum_1.1.1.orig.tar.gz dpkg-source: info: unpacking quorum_1.1.1-2.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/34958/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='0d4c0235a0ae41258d4a9e338e0c200e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='34958' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.i8ALjtPyZE/pbuilderrc_Yr06 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.i8ALjtPyZE/b1 --logfile b1/build.log quorum_1.1.1-2.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 5.9.0-0.bpo.2-amd64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jan 9 02:46 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/34958/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), libjellyfish-2.0-dev (>= 2.2.6-1~), jellyfish (>= 2.2.6-1~), yaggo, pkg-config dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libjellyfish-2.0-dev (>= 2.2.6-1~); however: Package libjellyfish-2.0-dev is not installed. pbuilder-satisfydepends-dummy depends on jellyfish (>= 2.2.6-1~); however: Package jellyfish is not installed. pbuilder-satisfydepends-dummy depends on yaggo; however: Package yaggo is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} jellyfish{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libjellyfish-2.0-2{a} libjellyfish-2.0-dev{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libreadline7{a} libruby2.5{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} openssl{a} pkg-config{a} po-debconf{a} rake{a} readline-common{a} ruby{a} ruby-did-you-mean{a} ruby-minitest{a} ruby-net-telnet{a} ruby-power-assert{a} ruby-test-unit{a} ruby-xmlrpc{a} ruby2.5{a} rubygems-integration{a} sensible-utils{a} yaggo{a} The following packages are RECOMMENDED but will NOT be installed: curl fonts-lato libarchive-cpio-perl libglib2.0-data libgpm2 libjs-jquery libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs zip 0 packages upgraded, 55 newly installed, 0 to remove and 0 not upgraded. Need to get 26.6 MB of archives. After unpacking 94.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u1 [242 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u1 [117 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u1 [66.4 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u3 [1538 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1d-0+deb10u3 [844 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20190110 [157 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u2 [1258 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u1 [689 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 libjellyfish-2.0-2 amd64 2.2.10-2 [64.6 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 jellyfish amd64 2.2.10-2 [361 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 libjellyfish-2.0-dev amd64 2.2.10-2 [135 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 rubygems-integration all 1.11+deb10u1 [5212 B] Get: 43 http://deb.debian.org/debian buster/main amd64 ruby2.5 amd64 2.5.5-3+deb10u3 [400 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 ruby amd64 1:2.5.1 [11.3 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 rake all 12.3.1-3+deb10u1 [67.1 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 ruby-did-you-mean all 1.2.1-1 [14.4 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 ruby-minitest all 5.11.3-1 [54.8 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 ruby-net-telnet all 0.1.1-2 [12.5 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 ruby-power-assert all 1.1.1-1 [10.9 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 ruby-test-unit all 3.2.8-1 [72.4 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 ruby-xmlrpc all 0.3.0-2 [23.7 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 libruby2.5 amd64 2.5.5-3+deb10u3 [3438 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 yaggo all 1.5.10-2 [18.9 kB] Fetched 26.6 MB in 0s (61.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../06-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../07-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../08-libmagic-mgc_1%3a5.35-4+deb10u1_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... 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Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libjellyfish-2.0-dev:amd64 (2.2.10-2) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 128 added, 0 removed; done. Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up rubygems-integration (1.11+deb10u1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up rake (12.3.1-3+deb10u1) ... Setting up libruby2.5:amd64 (2.5.5-3+deb10u3) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up ruby2.5 (2.5.5-3+deb10u3) ... Setting up ruby (1:2.5.1) ... Setting up yaggo (1.5.10-2) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for ca-certificates (20190110) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/quorum-1.1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package quorum dpkg-buildpackage: info: source version 1.1.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --no-parallel dh_auto_clean -O--no-parallel dh_autoreconf_clean -O--no-parallel dh_clean -O--no-parallel debian/rules build make: 'build' is up to date. fakeroot debian/rules binary dh binary --no-parallel dh_update_autotools_config -O--no-parallel dh_autoreconf -O--no-parallel libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'build-aux'. libtoolize: copying file 'build-aux/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:10: installing 'build-aux/compile' configure.ac:10: installing 'build-aux/config.guess' configure.ac:10: installing 'build-aux/config.sub' configure.ac:6: installing 'build-aux/install-sh' configure.ac:6: installing 'build-aux/missing' Makefile.am: installing 'build-aux/depcomp' parallel-tests: installing 'build-aux/test-driver' dh_auto_configure -O--no-parallel ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether make supports nested variables... (cached) yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for pthread_create in -lpthread... yes checking for clock_gettime in -lrt... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for yaggo... /usr/bin/yaggo checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for JELLYFISH2_0... yes checking for jellyfish... /usr/bin/jellyfish checking for __int128... yes checking whether strerror_r is declared... yes checking for strerror_r... yes checking whether strerror_r returns char *... yes checking for stdbool.h that conforms to C99... no checking for _Bool... no checking for size_t... yes checking for ssize_t... yes checking for ptrdiff_t... yes checking for dummy... no checking for jellyfish... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -O--no-parallel make -j1 make[1]: Entering directory '/build/quorum-1.1.1' yaggo src/error_correct_reads_cmdline.yaggo src/error_correct_reads_cmdline.hpp /usr/bin/yaggo --license ./header-license -o src/error_correct_reads_cmdline.hpp src/error_correct_reads_cmdline.yaggo yaggo src/create_database_cmdline.yaggo src/create_database_cmdline.hpp /usr/bin/yaggo --license ./header-license -o src/create_database_cmdline.hpp src/create_database_cmdline.yaggo yaggo src/merge_mate_pairs_cmdline.yaggo src/merge_mate_pairs_cmdline.hpp /usr/bin/yaggo --license ./header-license -o src/merge_mate_pairs_cmdline.hpp src/merge_mate_pairs_cmdline.yaggo yaggo src/split_mate_pairs_cmdline.yaggo src/split_mate_pairs_cmdline.hpp /usr/bin/yaggo --license ./header-license -o src/split_mate_pairs_cmdline.hpp src/split_mate_pairs_cmdline.yaggo make all-am make[2]: Entering directory '/build/quorum-1.1.1' g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.2.10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/error_correct_reads.o src/error_correct_reads.cc g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.2.10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/err_log.o src/err_log.cc /bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o quorum_error_correct_reads src/error_correct_reads.o src/err_log.o -ljellyfish-2.0 -lpthread -lrt -lpthread libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o quorum_error_correct_reads src/error_correct_reads.o src/err_log.o /usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.2.10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/create_database.o src/create_database.cc /bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o quorum_create_database src/create_database.o -ljellyfish-2.0 -lpthread -lrt -lpthread libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o quorum_create_database src/create_database.o /usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.2.10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/merge_mate_pairs.o src/merge_mate_pairs.cc /bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o merge_mate_pairs src/merge_mate_pairs.o -ljellyfish-2.0 -lpthread -lrt -lpthread libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o merge_mate_pairs src/merge_mate_pairs.o /usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.2.10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/split_mate_pairs.o src/split_mate_pairs.cc /bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o split_mate_pairs src/split_mate_pairs.o -ljellyfish-2.0 -lpthread -lrt -lpthread libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o split_mate_pairs src/split_mate_pairs.o /usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread sed -e 's|[@]JELLYFISH[@]|/usr/bin/jellyfish|g' -e 's|[@]bindir[@]|/build/quorum-1.1.1|g' -e 's|[@]JF_LIB_PATH[@]||g' -e 's|[@]PACKAGE_VERSION[@]|1.1.1|g' -e 's|[@]JELLYFISH_VERSION[@]|2.2.10|g' < src/quorum.in > quorum && chmod a+x quorum mkdir -p data; /usr/bin/jellyfish count -m 24 -s 5k -C -t 10 -o data/adapter.jf data/adapter.fa make[2]: Leaving directory '/build/quorum-1.1.1' make[1]: Leaving directory '/build/quorum-1.1.1' dh_auto_test -O--no-parallel make -j1 check VERBOSE=1 make[1]: Entering directory '/build/quorum-1.1.1' make check-am make[2]: Entering directory '/build/quorum-1.1.1' make all_tests query_mer_database histo_mer_database libgtest.la libgtest_main.la make[3]: Entering directory '/build/quorum-1.1.1' g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.2.10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -I./unit_tests/gtest/include -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o unit_tests/all_tests-test_mer_database.o `test -f 'unit_tests/test_mer_database.cc' || echo './'`unit_tests/test_mer_database.cc /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.2.10 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o unit_tests/gtest/src/libgtest_main_la-gtest_main.lo `test -f 'unit_tests/gtest/src/gtest_main.cc' || echo './'`unit_tests/gtest/src/gtest_main.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.2.10 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -c unit_tests/gtest/src/gtest_main.cc -fPIC -DPIC -o unit_tests/gtest/src/.libs/libgtest_main_la-gtest_main.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.2.10 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -c unit_tests/gtest/src/gtest_main.cc -o unit_tests/gtest/src/libgtest_main_la-gtest_main.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.2.10 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o unit_tests/gtest/src/libgtest_la-gtest-all.lo `test -f 'unit_tests/gtest/src/gtest-all.cc' || echo './'`unit_tests/gtest/src/gtest-all.cc libtool: compile: g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.2.10 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -c unit_tests/gtest/src/gtest-all.cc -fPIC -DPIC -o unit_tests/gtest/src/.libs/libgtest_la-gtest-all.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.2.10 -Wdate-time -D_FORTIFY_SOURCE=2 -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -c unit_tests/gtest/src/gtest-all.cc -o unit_tests/gtest/src/libgtest_la-gtest-all.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=link g++ -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o libgtest.la unit_tests/gtest/src/libgtest_la-gtest-all.lo -lrt -lpthread libtool: link: ar cru .libs/libgtest.a unit_tests/gtest/src/.libs/libgtest_la-gtest-all.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libgtest.a libtool: link: ( cd ".libs" && rm -f "libgtest.la" && ln -s "../libgtest.la" "libgtest.la" ) /bin/bash ./libtool --tag=CXX --mode=link g++ -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o libgtest_main.la unit_tests/gtest/src/libgtest_main_la-gtest_main.lo libgtest.la -lrt -lpthread libtool: link: (cd .libs/libgtest_main.lax/libgtest.a && ar x "/build/quorum-1.1.1/./.libs/libgtest.a") libtool: link: ar cru .libs/libgtest_main.a unit_tests/gtest/src/.libs/libgtest_main_la-gtest_main.o .libs/libgtest_main.lax/libgtest.a/libgtest_la-gtest-all.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libgtest_main.a libtool: link: rm -fr .libs/libgtest_main.lax libtool: link: ( cd ".libs" && rm -f "libgtest_main.la" && ln -s "../libgtest_main.la" "libgtest_main.la" ) /bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -I./unit_tests/gtest/include -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o all_tests unit_tests/all_tests-test_mer_database.o libgtest_main.la -ljellyfish-2.0 -lpthread -lrt -lpthread libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -I./unit_tests/gtest/include -I./unit_tests -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o all_tests unit_tests/all_tests-test_mer_database.o ./.libs/libgtest_main.a /usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.2.10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/query_mer_database.o src/query_mer_database.cc /bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o query_mer_database src/query_mer_database.o -ljellyfish-2.0 -lpthread -lrt -lpthread libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o query_mer_database src/query_mer_database.o /usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread g++ -DHAVE_CONFIG_H -I. -I./include -I. -I/usr/include/jellyfish-2.2.10 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -o src/histo_mer_database.o src/histo_mer_database.cc /bin/bash ./libtool --tag=CXX --mode=link g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o histo_mer_database src/histo_mer_database.o -ljellyfish-2.0 -lpthread -lrt -lpthread libtool: link: g++ -Wall -g -O2 -std=c++0x -Werror -g -O2 -ffile-prefix-map=/build/quorum-1.1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o histo_mer_database src/histo_mer_database.o /usr/lib/x86_64-linux-gnu/libjellyfish-2.0.so -lrt -lpthread make[3]: 'libgtest.la' is up to date. make[3]: 'libgtest_main.la' is up to date. make[3]: Leaving directory '/build/quorum-1.1.1' make check-TESTS make[3]: Entering directory '/build/quorum-1.1.1' make[4]: Entering directory '/build/quorum-1.1.1' PASS: all_tests ============================================================================ Testsuite summary for quorum 1.1.1 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/build/quorum-1.1.1' make[3]: Leaving directory '/build/quorum-1.1.1' make[2]: Leaving directory '/build/quorum-1.1.1' make[1]: Leaving directory '/build/quorum-1.1.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--no-parallel dh_prep -O--no-parallel dh_auto_install -O--no-parallel make -j1 install DESTDIR=/build/quorum-1.1.1/debian/quorum AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/quorum-1.1.1' make install-am make[2]: Entering directory '/build/quorum-1.1.1' make[3]: Entering directory '/build/quorum-1.1.1' /bin/mkdir -p '/build/quorum-1.1.1/debian/quorum/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c quorum_error_correct_reads quorum_create_database merge_mate_pairs split_mate_pairs '/build/quorum-1.1.1/debian/quorum/usr/bin' libtool: install: /usr/bin/install -c quorum_error_correct_reads /build/quorum-1.1.1/debian/quorum/usr/bin/quorum_error_correct_reads libtool: install: /usr/bin/install -c quorum_create_database /build/quorum-1.1.1/debian/quorum/usr/bin/quorum_create_database libtool: install: /usr/bin/install -c merge_mate_pairs /build/quorum-1.1.1/debian/quorum/usr/bin/merge_mate_pairs libtool: install: /usr/bin/install -c split_mate_pairs /build/quorum-1.1.1/debian/quorum/usr/bin/split_mate_pairs /bin/mkdir -p '/build/quorum-1.1.1/debian/quorum/usr/bin' /usr/bin/install -c .libs/quorum '/build/quorum-1.1.1/debian/quorum/usr/bin' /bin/mkdir -p '/build/quorum-1.1.1/debian/quorum/usr/share' /usr/bin/install -c -m 644 data/adapter.jf '/build/quorum-1.1.1/debian/quorum/usr/share' make[3]: Leaving directory '/build/quorum-1.1.1' make[2]: Leaving directory '/build/quorum-1.1.1' make[1]: Leaving directory '/build/quorum-1.1.1' debian/rules override_dh_install make[1]: Entering directory '/build/quorum-1.1.1' dh_install mkdir -p debian/quorum/usr/share/quorum mv debian/quorum/usr/share/adapter* debian/quorum/usr/share/quorum sed -i '1s+#! */usr/bin/env perl+#!/usr/bin/perl+' debian/*/usr/bin/* make[1]: Leaving directory '/build/quorum-1.1.1' dh_installdocs -O--no-parallel dh_installchangelogs -O--no-parallel dh_installman -O--no-parallel dh_installinit -O--no-parallel dh_perl -O--no-parallel dh_link -O--no-parallel dh_strip_nondeterminism -O--no-parallel dh_compress -O--no-parallel dh_fixperms -O--no-parallel dh_missing -O--no-parallel dh_strip -O--no-parallel dh_makeshlibs -O--no-parallel dh_shlibdeps -O--no-parallel dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/quorum/usr/bin/merge_mate_pairs debian/quorum/usr/bin/split_mate_pairs debian/quorum/usr/bin/quorum_error_correct_reads debian/quorum/usr/bin/quorum_create_database were not linked against librt.so.1 (they use none of the library's symbols) dh_installdeb -O--no-parallel dh_gencontrol -O--no-parallel dpkg-gencontrol: warning: package quorum: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package quorum: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -O--no-parallel dh_builddeb -O--no-parallel dpkg-deb: building package 'quorum-dbgsym' in '../quorum-dbgsym_1.1.1-2_amd64.deb'. dpkg-deb: building package 'quorum' in '../quorum_1.1.1-2_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../quorum_1.1.1-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/34958 and its subdirectories I: Current time: Sat Jan 15 21:47:18 -12 2022 I: pbuilder-time-stamp: 1642326438 Mon Dec 14 03:24:02 UTC 2020 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Mon Dec 14 03:24:02 UTC 2020 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Mon Dec 14 03:26:43 UTC 2020 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Mon Dec 14 03:26:43 UTC 2020 I: quorum_1.1.1-2_amd64.changes: Format: 1.8 Date: Fri, 07 Sep 2018 15:33:40 +0200 Source: quorum Binary: quorum quorum-dbgsym Architecture: amd64 Version: 1.1.1-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: quorum - QUality Optimized Reads of genomic sequences Changes: quorum (1.1.1-2) unstable; urgency=medium . * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * d/rules: - Fix Perl interpreter path - Do not parse d/changelog Checksums-Sha1: 38eba93e99e30640b6fcb9ccde6e97f015aa2df3 1051308 quorum-dbgsym_1.1.1-2_amd64.deb c58bb300509cd6da8d20f47828eff891ac91b048 5267 quorum_1.1.1-2_amd64.buildinfo 7e62332cdf1b2bcf3209de88892f68d76949720b 126144 quorum_1.1.1-2_amd64.deb Checksums-Sha256: 223d0f1bfb9cf07c9f1b81b27e3ecbf67b4c326e7034de2b43ddd91a773efbf3 1051308 quorum-dbgsym_1.1.1-2_amd64.deb ec803e97aaca6875108a837e45d91a5467f71a7abdbccd86cc39547873ce11d8 5267 quorum_1.1.1-2_amd64.buildinfo 102ac94915304744c8d8896f2741d4b05da4168abcbf533c8565dbb6f32e6552 126144 quorum_1.1.1-2_amd64.deb Files: 284ee295b4236e54ea3dd2e2db67fba3 1051308 debug optional quorum-dbgsym_1.1.1-2_amd64.deb 435ae72711b6259194a44f5ea9648410 5267 science optional quorum_1.1.1-2_amd64.buildinfo 79767092bfaade40335bcef94d0fd983 126144 science optional quorum_1.1.1-2_amd64.deb Mon Dec 14 03:26:44 UTC 2020 I: diffoscope 162 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.i8ALjtPyZE/quorum_1.1.1-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.i8ALjtPyZE/quorum_1.1.1-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.i8ALjtPyZE/quorum_1.1.1-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.i8ALjtPyZE/b1/quorum_1.1.1-2_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.i8ALjtPyZE/b2/quorum_1.1.1-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.267s) 0.267s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.035s) 0.035s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Mon Dec 14 03:26:46 UTC 2020 I: diffoscope 162 found no differences in the changes files, and a .buildinfo file also exists. Mon Dec 14 03:26:46 UTC 2020 I: quorum from buster built successfully and reproducibly on amd64. Mon Dec 14 03:26:48 UTC 2020 I: Submitting .buildinfo files to external archives: Mon Dec 14 03:26:48 UTC 2020 I: Submitting 8.0K b1/quorum_1.1.1-2_amd64.buildinfo.asc Mon Dec 14 03:26:49 UTC 2020 I: Submitting 8.0K b2/quorum_1.1.1-2_amd64.buildinfo.asc Mon Dec 14 03:26:50 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Dec 14 03:26:50 UTC 2020 I: Done submitting .buildinfo files. Mon Dec 14 03:26:50 UTC 2020 I: Removing signed quorum_1.1.1-2_amd64.buildinfo.asc files: removed './b1/quorum_1.1.1-2_amd64.buildinfo.asc' removed './b2/quorum_1.1.1-2_amd64.buildinfo.asc'