Sun Dec 12 20:16:08 UTC 2021 I: starting to build python-pyvcf/buster/amd64 on jenkins on '2021-12-12 20:15' Sun Dec 12 20:16:08 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_30/45691/console.log Sun Dec 12 20:16:09 UTC 2021 I: Downloading source for buster/python-pyvcf=0.6.8+git20170215.476169c-1 --2021-12-12 20:16:09-- http://deb.debian.org/debian/pool/main/p/python-pyvcf/python-pyvcf_0.6.8%2bgit20170215.476169c-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2425 (2.4K) Saving to: ‘python-pyvcf_0.6.8+git20170215.476169c-1.dsc’ 0K .. 100% 210M=0s 2021-12-12 20:16:09 (210 MB/s) - ‘python-pyvcf_0.6.8+git20170215.476169c-1.dsc’ saved [2425/2425] Sun Dec 12 20:16:09 UTC 2021 I: python-pyvcf_0.6.8+git20170215.476169c-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-pyvcf Binary: python-pyvcf, python3-pyvcf, pyvcf, python-pyvcf-examples Architecture: any all Version: 0.6.8+git20170215.476169c-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://pypi.python.org/pypi/PyVCF Standards-Version: 4.1.5 Vcs-Browser: https://salsa.debian.org/med-team/python-pyvcf Vcs-Git: https://salsa.debian.org/med-team/python-pyvcf.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper (>= 11~), dh-python, cython, python-dev, python-setuptools, cython3, python3-all-dev, python3-setuptools Package-List: python-pyvcf deb python optional arch=any python-pyvcf-examples deb python optional arch=all python3-pyvcf deb python optional arch=any pyvcf deb python optional arch=all Checksums-Sha1: fd87bba83272c2a1bbdb7ab633ef90e4b12b3836 935752 python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz 6e42422afab0f1dc0cea5880755613365b275cb5 4724 python-pyvcf_0.6.8+git20170215.476169c-1.debian.tar.xz Checksums-Sha256: df89a50c3b0faed0acffe86377ceca77053b2fc516de95e4a14623bbef42fb87 935752 python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz acf9afd93cebe363777871ee87b6ce15da5814ceb31740030b6406f4133319d8 4724 python-pyvcf_0.6.8+git20170215.476169c-1.debian.tar.xz Files: 257a20310260fb287a7ec4f2b5a35678 935752 python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz 2ac824ec6c00eedb0622d7a23a6cd9a4 4724 python-pyvcf_0.6.8+git20170215.476169c-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAltlsXARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtG+KQ//Xc42CK1jcTYbGIoE/mhrCaP+rZa5IADy AFnUtFXgQzD8G4dUkLPFRpOmGUFewUA0o5Gu+GBHTNjzj4gmZf6KpIdYRDBAoNun IUXG9A9HAjiqQ1bz87w+ReZHgCyJYoAFaNGFi2LlCcnKEP19jiKTTYBKNAtNwgZ2 sUNMtDkIAnFjlulvfiJ30o9aY6jNg+vmDKmJZQbeURxPBVb9z4q+9Hcn/7puONit 7X0dWsfh6LpjkkE+29tH+u6U4XfLJjb53sS0AenM7LF5F7Y838PbZvHlHDjSx9ev KZKP/njYehL2Yqy224166OIoCqRAJxqfD/PYcQrHCbrYlMgxj93Ah5lKBRDOKqCc zYJ0KbXQL9KE8L9G82T+DAq78nSypbPpkUxyplw47vzaC7KHJnO61a8yBXbjT3K8 Sp+zndftXWQZ3gUk5GmKLY+xWZuCT8/Cmv91RIwvbHHkT2ZcnbD89BXtXrIRzQ2T Ltz6lbFw9JtcXrCN0PO7Dy1tcFzFt/ccLaUr8qiqPyqtWOxQH1qgiAyEWDnV/ar8 6AkHbd8pwdIO5zLw6riIExeBhJvNe8EP1KoZq3C1kwTDinG52Xj44dR4AwCwSHPH uwgFXl88gCQFqSwcXrvNeajsxFgJG3Se3x4cdxHY49XSUW58t8EKjGezG9nX56an SBYqGet/4TQ= =Q2hy -----END PGP SIGNATURE----- Sun Dec 12 20:16:09 UTC 2021 I: Checking whether the package is not for us Sun Dec 12 20:16:09 UTC 2021 I: Starting 1st build on remote node ionos5-amd64.debian.net. Sun Dec 12 20:16:09 UTC 2021 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Sun Dec 12 20:17:21 UTC 2021 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Jan 14 14:39:11 -12 2023 I: pbuilder-time-stamp: 1673750351 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-pyvcf_0.6.8+git20170215.476169c-1.dsc] I: copying [./python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz] I: copying [./python-pyvcf_0.6.8+git20170215.476169c-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Aug 4 02:00:16 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-pyvcf_0.6.8+git20170215.476169c-1.dsc dpkg-source: info: extracting python-pyvcf in python-pyvcf-0.6.8+git20170215.476169c dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c.orig.tar.xz dpkg-source: info: unpacking python-pyvcf_0.6.8+git20170215.476169c-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1070515/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='452c2977a64e4eaea72ba6bb38b33345' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1070515' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Gblcuacjns/pbuilderrc_fPhk --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Gblcuacjns/b1 --logfile b1/build.log python-pyvcf_0.6.8+git20170215.476169c-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Dec 10 16:21 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/1070515/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), dh-python, cython, python-dev, python-setuptools, cython3, python3-all-dev, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on cython; however: Package cython is not installed. pbuilder-satisfydepends-dummy depends on python-dev; however: Package python-dev is not installed. pbuilder-satisfydepends-dummy depends on python-setuptools; however: Package python-setuptools is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} cython{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libpipeline1{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.7{a} libpython3.7-dev{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python{a} python-dev{a} python-minimal{a} python-pkg-resources{a} python-setuptools{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.7{a} python3.7-dev{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 81 newly installed, 0 to remove and 0 not upgraded. Need to get 117 MB of archives. After unpacking 283 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u1 [1369 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u7 [1539 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u1 [1912 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 python2.7 amd64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 python amd64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 cython amd64 0.29.2-2 [1365 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 cython3 amd64 0.29.2-2 [1392 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 dh-python all 3.20190308 [99.3 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 libexpat1-dev amd64 2.2.6-2+deb10u1 [153 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 libpython2.7 amd64 2.7.16-2+deb10u1 [1036 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 libpython2.7-dev amd64 2.7.16-2+deb10u1 [31.6 MB] Get: 65 http://deb.debian.org/debian buster/main amd64 libpython2-dev amd64 2.7.16-1 [20.9 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 libpython-dev amd64 2.7.16-1 [20.9 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 libpython3.7 amd64 3.7.3-2+deb10u3 [1498 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 libpython3.7-dev amd64 3.7.3-2+deb10u3 [48.4 MB] Get: 69 http://deb.debian.org/debian buster/main amd64 libpython3-dev amd64 3.7.3-1 [20.1 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 libpython3-all-dev amd64 3.7.3-1 [1068 B] Get: 71 http://deb.debian.org/debian buster/main amd64 python2.7-dev amd64 2.7.16-2+deb10u1 [294 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 python2-dev amd64 2.7.16-1 [1212 B] Get: 73 http://deb.debian.org/debian buster/main amd64 python-dev amd64 2.7.16-1 [1192 B] Get: 74 http://deb.debian.org/debian buster/main amd64 python-pkg-resources all 40.8.0-1 [182 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 python-setuptools all 40.8.0-1 [382 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 python3-all amd64 3.7.3-1 [1068 B] Get: 77 http://deb.debian.org/debian buster/main amd64 python3.7-dev amd64 3.7.3-2+deb10u3 [510 kB] Get: 78 http://deb.debian.org/debian buster/main amd64 python3-dev amd64 3.7.3-1 [1264 B] Get: 79 http://deb.debian.org/debian buster/main amd64 python3-all-dev amd64 3.7.3-1 [1064 B] Get: 80 http://deb.debian.org/debian buster/main amd64 python3-pkg-resources all 40.8.0-1 [153 kB] Get: 81 http://deb.debian.org/debian buster/main amd64 python3-setuptools all 40.8.0-1 [306 kB] Fetched 117 MB in 2s (71.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20658 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_amd64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... 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Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Setting up libpython3.7:amd64 (3.7.3-2+deb10u3) ... Setting up libtool (2.4.6-9) ... Setting up libpython3.7-dev:amd64 (3.7.3-2+deb10u3) ... Setting up m4 (1.4.18-2) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up libpython2.7:amd64 (2.7.16-2+deb10u1) ... Setting up libpython2.7-dev:amd64 (2.7.16-2+deb10u1) ... Setting up gettext (0.19.8.1-9) ... Setting up libpython3-dev:amd64 (3.7.3-1) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up python3.7-dev (3.7.3-2+deb10u3) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up libpython3-all-dev:amd64 (3.7.3-1) ... Setting up cython3 (0.29.2-2) ... Setting up libpython2-dev:amd64 (2.7.16-1) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python (2.7.16-1) ... Setting up python2.7-dev (2.7.16-2+deb10u1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up cython (0.29.2-2) ... Setting up python2-dev (2.7.16-1) ... Setting up python3-setuptools (40.8.0-1) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up po-debconf (1.0.21) ... Setting up python3-all (3.7.3-1) ... Setting up libpython-dev:amd64 (2.7.16-1) ... Setting up python3-dev (3.7.3-1) ... Setting up python-setuptools (40.8.0-1) ... Setting up python-dev (2.7.16-1) ... Setting up python3-all-dev (3.7.3-1) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/python-pyvcf-0.6.8+git20170215.476169c/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pyvcf_0.6.8+git20170215.476169c-1_source.changes dpkg-buildpackage: info: source package python-pyvcf dpkg-buildpackage: info: source version 0.6.8+git20170215.476169c-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python2,python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py clean running clean removing '/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it I: pybuild base:217: python3.7 setup.py clean running clean removing '/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python2,python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py config running config I: pybuild base:217: python3.7 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py build running build running build_py creating /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf copying vcf/utils.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf copying vcf/sample_filter.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf copying vcf/parser.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf copying vcf/model.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf copying vcf/filters.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf copying vcf/__init__.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf creating /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/test_vcf.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/prof.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/__init__.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test running egg_info creating PyVCF.egg-info writing requirements to PyVCF.egg-info/requires.txt writing PyVCF.egg-info/PKG-INFO writing top-level names to PyVCF.egg-info/top_level.txt writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'PyVCF.egg-info/SOURCES.txt' copying vcf/cparse.pyx -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf copying vcf/test/walk_refcall.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/walk_left.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/uncalled_genotypes.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/string_as_flag.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/strelka.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/samtools.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/samples-space.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/parse-meta-line.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/null_genotype_mono.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/mixed-filtering.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/metadata-whitespace.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/issue_49.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/issue-254.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/issue-214.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/issue-16.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/issue-140-file3.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/issue-140-file2.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/issue-140-file1.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/info-type-character.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/gonl.chr20.release4.gtc.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/gatk_26_meta.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/gatk.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/freebayes.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/example-4.2.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/example-4.1.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/example-4.1-sv.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/example-4.1-ploidy.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/example-4.1-info-multiple-values.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/example-4.1-bnd.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/example-4.0.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/contig_idonly.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/bcftools.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/bad-info-character.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/FT.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/1kg.sites.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/tb.vcf.gz -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/issue-201.vcf.gz -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/1kg.vcf.gz -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/tb.vcf.gz.tbi -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test copying vcf/test/issue-201.vcf.gz.tbi -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test running build_ext cythoning vcf/cparse.pyx to vcf/cparse.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-pyvcf-0.6.8+git20170215.476169c/vcf/cparse.pyx tree = Parsing.p_module(s, pxd, full_module_name) warning: vcf/cparse.pyx:29:14: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:21: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:27: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. warning: vcf/cparse.pyx:29:40: Non-trivial type declarators in shared declaration (e.g. mix of pointers and values). Each pointer declaration should be on its own line. building 'vcf.cparse' extension creating build creating build/temp.linux-amd64-2.7 creating build/temp.linux-amd64-2.7/vcf x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c vcf/cparse.c -o build/temp.linux-amd64-2.7/vcf/cparse.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/vcf/cparse.o -o /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/cparse.so running build_scripts creating build/scripts-2.7 copying and adjusting scripts/vcf_melt -> build/scripts-2.7 copying and adjusting scripts/vcf_filter.py -> build/scripts-2.7 copying and adjusting scripts/vcf_sample_filter.py -> build/scripts-2.7 changing mode of build/scripts-2.7/vcf_melt from 644 to 755 changing mode of build/scripts-2.7/vcf_filter.py from 644 to 755 changing mode of build/scripts-2.7/vcf_sample_filter.py from 644 to 755 I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_py creating /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf copying vcf/utils.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf copying vcf/sample_filter.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf copying vcf/parser.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf copying vcf/model.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf copying vcf/filters.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf copying vcf/__init__.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf creating /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/test_vcf.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/prof.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/__init__.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test running egg_info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing requirements to PyVCF.egg-info/requires.txt writing top-level names to PyVCF.egg-info/top_level.txt reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'PyVCF.egg-info/SOURCES.txt' copying vcf/cparse.pyx -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf copying vcf/test/walk_refcall.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/walk_left.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/uncalled_genotypes.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/string_as_flag.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/strelka.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/samtools.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/samples-space.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/parse-meta-line.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/null_genotype_mono.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/mixed-filtering.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/metadata-whitespace.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/issue_49.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/issue-254.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/issue-214.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/issue-16.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/issue-140-file3.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/issue-140-file2.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/issue-140-file1.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/info-type-character.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/gonl.chr20.release4.gtc.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/gatk_26_meta.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/gatk.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/freebayes.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/example-4.2.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/example-4.1.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/example-4.1-sv.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/example-4.1-ploidy.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/example-4.1-info-multiple-values.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/example-4.1-bnd.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/example-4.0.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/contig_idonly.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/bcftools.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/bad-info-character.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/FT.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/1kg.sites.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/tb.vcf.gz -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/issue-201.vcf.gz -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/1kg.vcf.gz -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/tb.vcf.gz.tbi -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test copying vcf/test/issue-201.vcf.gz.tbi -> /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test Fixing /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/utils.py /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/sample_filter.py /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/parser.py /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/model.py /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/filters.py /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/__init__.py /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/prof.py /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/__init__.py Skipping optional fixer: buffer Skipping optional fixer: idioms Skipping optional fixer: set_literal Skipping optional fixer: ws_comma Fixing /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/utils.py /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/sample_filter.py /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/parser.py /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/model.py /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/filters.py /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/__init__.py /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/prof.py /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/__init__.py Skipping optional fixer: buffer Skipping optional fixer: idioms Skipping optional fixer: set_literal Skipping optional fixer: ws_comma running build_ext skipping 'vcf/cparse.c' Cython extension (up-to-date) building 'vcf.cparse' extension creating build/temp.linux-amd64-3.7 creating build/temp.linux-amd64-3.7/vcf x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c vcf/cparse.c -o build/temp.linux-amd64-3.7/vcf/cparse.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-3.7/vcf/cparse.o -o /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/cparse.cpython-37m-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.7 copying and adjusting scripts/vcf_melt -> build/scripts-3.7 copying and adjusting scripts/vcf_filter.py -> build/scripts-3.7 copying and adjusting scripts/vcf_sample_filter.py -> build/scripts-3.7 changing mode of build/scripts-3.7/vcf_melt from 644 to 755 changing mode of build/scripts-3.7/vcf_filter.py from 644 to 755 changing mode of build/scripts-3.7/vcf_sample_filter.py from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py test running test running egg_info writing requirements to PyVCF.egg-info/requires.txt writing PyVCF.egg-info/PKG-INFO writing top-level names to PyVCF.egg-info/top_level.txt writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'PyVCF.egg-info/SOURCES.txt' running build_ext skipping 'vcf/cparse.c' Cython extension (up-to-date) building 'vcf.cparse' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c vcf/cparse.c -o build/temp.linux-amd64-2.7/vcf/cparse.o x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/python-pyvcf-0.6.8+git20170215.476169c=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/vcf/cparse.o -o /build/python-pyvcf-0.6.8+git20170215.476169c/vcf/cparse.so test_contig_idonly (vcf.test.test_vcf.TestVcfSpecs) Test VCF inputs with ##contig inputs containing only IDs. produced by bcftools 1.2+ ... ok test_vcf_4_0 (vcf.test.test_vcf.TestVcfSpecs) ... ok test_vcf_4_1 (vcf.test.test_vcf.TestVcfSpecs) ... ok test_vcf_4_1_bnd (vcf.test.test_vcf.TestVcfSpecs) ... ok test_vcf_4_1_sv (vcf.test.test_vcf.TestVcfSpecs) ... ok test_vcf_4_2 (vcf.test.test_vcf.TestVcfSpecs) ... ok testCalls (vcf.test.test_vcf.TestGatkOutput) ... ok testFormats (vcf.test.test_vcf.TestGatkOutput) ... ok testInfos (vcf.test.test_vcf.TestGatkOutput) ... ok testSamples (vcf.test.test_vcf.TestGatkOutput) ... ok testCalls (vcf.test.test_vcf.TestFreebayesOutput) ... ok testFormats (vcf.test.test_vcf.TestFreebayesOutput) ... ok testInfos (vcf.test.test_vcf.TestFreebayesOutput) ... ok testParse (vcf.test.test_vcf.TestFreebayesOutput) ... ok testSamples (vcf.test.test_vcf.TestFreebayesOutput) ... ok testParse (vcf.test.test_vcf.TestSamtoolsOutput) ... ok testParse (vcf.test.test_vcf.TestBcfToolsOutput) ... ok test_issue_214_is_snp (vcf.test.test_vcf.TestIssue214) ... ok test_issue_214_ref_is_del_is_snp (vcf.test.test_vcf.TestIssue214) ... ok test_issue_214_ref_is_del_var_type (vcf.test.test_vcf.TestIssue214) ... ok test_issue_214_var_type (vcf.test.test_vcf.TestIssue214) ... ok testParse (vcf.test.test_vcf.Test1kg) ... ok test_issue_49 (vcf.test.test_vcf.Test1kg) docstring for test_issue_49 ... ok test_reader (vcf.test.test_vcf.Test1kgSites) The samples attribute should be the empty list. ... ok test_writer (vcf.test.test_vcf.Test1kgSites) FORMAT should not be written if not present in the template and no ... ok testParse (vcf.test.test_vcf.TestGoNL) ... ok test_contig_line (vcf.test.test_vcf.TestGoNL) ... ok test_string_as_flag (vcf.test.test_vcf.TestStringAsFlag) A flag INFO field is declared as string (not allowed by the spec, ... ok test_writer (vcf.test.test_vcf.TestInfoOrder) ... ok test_parse (vcf.test.test_vcf.TestInfoTypeCharacter) ... ok test_write (vcf.test.test_vcf.TestInfoTypeCharacter) ... ok test_parse (vcf.test.test_vcf.TestParseMetaLine) ... ok test_write (vcf.test.test_vcf.TestParseMetaLine) ... ok testWrite (vcf.test.test_vcf.TestGatkOutputWriter) ... Record(CHROM=1, POS=2, REF=A, ALT=[T]) T Call(sample=Germline, CallData(GT=0|1, MQ=[0, 40], HAP=[35, 46])) Call(sample=Tumor, CallData(GT=0|1, MQ=[0, 0], HAP=[35, 46])) Record(CHROM=1, POS=2, REF=T, ALT=[T[2:3[]) T[2:3[ Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['35>35', '46>46'])) Call(sample=Tumor, CallData(GT=0|1, MQ=[0, 40], BHAP=['35>35', '46>17'])) Record(CHROM=1, POS=3, REF=A, ALT=[]2:2]A]) ]2:2]A Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['35>35', '46>46'])) Call(sample=Tumor, CallData(GT=0|1, MQ=[0, 40], BHAP=['35>35', '46>17'])) Record(CHROM=2, POS=1, REF=G, ALT=[T]) T Call(sample=Germline, CallData(GT=1|0, MQ=[0, 40], HAP=[17, 23])) Call(sample=Tumor, CallData(GT=1|0, MQ=[0, 0], HAP=[17, 23])) Record(CHROM=2, POS=2, REF=G, ALT=[G[1:3[]) G[1:3[ Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['17>17', '23>23'], BCN=['1', '1'])) Call(sample=Tumor, CallData(GT=0|1, MQ=[0, 40], BHAP=['23>23', '17>46'], BCN=['2', '1'])) Record(CHROM=2, POS=3, REF=G, ALT=[]1:2]G]) ]1:2]G Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['17>17', '23>23'], BCN=['1', '1'])) Call(sample=Tumor, CallData(GT=0|1, MQ=[0, 40], BHAP=['23>23', '17>46'], BCN=['2', '1'])) Record(CHROM=2, POS=4, REF=G, ALT=[]2:6]G]) ]2:6]G Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['17>17', '23>23'], AHAP=[17, 23], BCN=['1', '1'])) Call(sample=Tumor, CallData(GT=0|0|1, MQ=[0, 0, 40], BHAP=['17>17', '23>23', '24>23'], AHAP=[17, 23, 23], BCN=['1', '2', '2'])) Record(CHROM=2, POS=6, REF=T, ALT=[T[2:4[]) T[2:4[ Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['17>17', '23>23'], AHAP=[17, 23], BCN=['1', '1'])) Call(sample=Tumor, CallData(GT=0|1|0, MQ=[0, 40, 0], BHAP=['17>17', '23>24', '24>24'], AHAP=[17, 23, 23], BCN=['1', '2', '2'])) Record(CHROM=2, POS=6, REF=T, ALT=[A]) A Call(sample=Germline, CallData(GT=0|1, MQ=[0, 40], HAP=[23, 17], AHAP=[23, 17])) Call(sample=Tumor, CallData(GT=0|1|1, MQ=[0, 0, 0], HAP=[17, 23, 24], AHAP=[17, 23, 23])) Record(CHROM=2, POS=8, REF=T, ALT=[A]) A Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], HAP=[23, 17], AHAP=[23, 17])) Call(sample=Tumor, CallData(GT=0|1|1, MQ=[0, 40, 40], HAP=[17, 23, 24], AHAP=[17, 23, 23])) Record(CHROM=1, POS=2827693, REF=CCGTGGATGCGGGGACCCGCATCCCCTCTCCCTTCACAGCTGAGTGACCCACATCCCCTCTCCCCTCGCA, ALT=[C]) C Call(sample=NA00001, CallData(GT=1/1, GQ=13.9)) Record(CHROM=2, POS=321682, REF=T, ALT=[]) Call(sample=NA00001, CallData(GT=0/1, GQ=12.0)) Record(CHROM=2, POS=14477084, REF=C, ALT=[]) Call(sample=NA00001, CallData(GT=0/1, GQ=12.0)) Record(CHROM=3, POS=9425916, REF=C, ALT=[]) Call(sample=NA00001, CallData(GT=1/1, GQ=15.0)) Record(CHROM=3, POS=12665100, REF=A, ALT=[]) Call(sample=NA00001, CallData(GT=./., GQ=0.0, CN=3, CNQ=16.2)) Record(CHROM=4, POS=18665128, REF=T, ALT=[]) Call(sample=NA00001, CallData(GT=./., GQ=0.0, CN=5, CNQ=8.3)) ['BLANK', 'NA12878', 'NA12891', 'NA12892', 'NA19238', 'NA19239', 'NA19240'] ##fileformat=VCFv4.1 ##UnifiedGenotyper="analysis_type=UnifiedGenotyper input_file=[reads.bam] read_buffer_size=null phone_home=NO_ET read_filter=[] intervals=[chr22:42020321-42527953] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL reference_sequence=/data/reference/ucsc/hg19/ucsc.hg19.fasta rodBind=[] nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=250 baq=CALCULATE_AS_NECESSARY baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false defaultBaseQualities=-1 validation_strictness=SILENT unsafe=null num_threads=2 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false logging_level=INFO log_to_file=gatk.log help=false genotype_likelihoods_model=SNP p_nonref_model=EXACT heterozygosity=0.001 pcr_error_rate=1.0E-4 genotyping_mode=DISCOVERY output_mode=EMIT_VARIANTS_ONLY standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=30.0 computeSLOD=false alleles=(RodBinding name= source=UNBOUND) min_base_quality_score=17 max_deletion_fraction=0.15 multiallelic=false max_alternate_alleles=5 min_indel_count_for_genotyping=5 indel_heterozygosity=1.25E-4 indelGapContinuationPenalty=10.0 indelGapOpenPenalty=45.0 indelHaplotypeSize=80 bandedIndel=false indelDebug=false ignoreSNPAlleles=false dbsnp=(RodBinding name=dbsnp source=/data/reference/dbSNP_132/dbsnp_132.hg19.vcf) out=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub NO_HEADER=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub debug_file=null metrics_file=null annotation=[] excludeAnnotation=[] filter_mismatching_base_and_quals=false" ##reference=file:///data/reference/ucsc/hg19/ucsc.hg19.fasta ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT BLANK NA12878 NA12891 NA12892 NA19238 NA19239 NA19240 chr22 42522392 rs28371738 G A 2951.95 . AC=2;AF=0.143;AN=14;BaseQRankSum=0.375;DB;DP=1506;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=123.5516;MQ=253.92;MQ0=0;MQRankSum=0.685;QD=5.9;ReadPosRankSum=0.59 GT:AD:DP:GQ:PL 0/0:6,0:6:18.04:0,18,211 0/1:138,107:250:99.0:1961,0,3049 0/1:169,77:250:99.0:1038,0,3533 0/0:249,0:250:99.0:0,600,5732 0/0:248,1:250:99.0:0,627,6191 0/0:250,0:250:99.0:0,615,5899 0/0:250,0:250:99.0:0,579,5674 chr22 42522613 rs1135840 G C 11611.03 . AC=6;AF=0.429;AN=14;BaseQRankSum=16.289;DB;DP=1518;DS;Dels=0.03;FS=0.0;HRun=0;HaplotypeScore=142.5716;MQ=242.46;MQ0=0;MQRankSum=2.01;QD=9.16;ReadPosRankSum=-1.731 GT:AD:DP:GQ:PL 0/1:13,4:17:62.64:63,0,296 0/1:118,127:246:99.0:2396,0,1719 0/0:241,0:244:99.0:0,459,4476 0/1:161,85:246:99.0:1489,0,2353 0/1:110,132:242:99.0:2561,0,1488 0/1:106,135:242:99.0:2613,0,1389 0/1:116,126:243:99.0:2489,0,1537 chr22 42522755 . C G 36.98 . AC=1;AF=0.071;AN=14;BaseQRankSum=-14.866;DP=1527;DS;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=253.4254;MQ=197.36;MQ0=2;MQRankSum=-10.81;QD=0.15;ReadPosRankSum=-17.244 GT:AD:DP:GQ:PL 0/0:26,1:27:51.08:0,51,570 0/0:208,40:248:99.0:0,236,4169 0/0:192,56:249:99.0:0,114,4292 0/1:179,66:245:75.42:75,0,3683 0/0:214,32:246:99.0:0,172,4235 0/0:200,49:249:61.05:0,61,4049 0/0:195,50:246:32.07:0,32,3757 chr22 42523003 rs116917064 A G 7113.55 . AC=8;AF=0.571;AN=14;BaseQRankSum=6.026;DB;DP=1433;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=101.7894;MQ=182.04;MQ0=0;MQRankSum=-2.501;QD=4.96;ReadPosRankSum=8.294 GT:AD:DP:GQ:PL 0/1:10,2:12:0.62:1,0,257 1/1:9,173:183:99.0:2385,273,0 0/1:153,95:249:99.0:355,0,2355 0/1:140,110:250:99.0:1334,0,2242 0/1:164,85:249:99.0:1070,0,2279 0/1:160,90:250:99.0:1245,0,2300 0/1:156,81:238:99.0:724,0,2764 chr22 42523077 . A G 54.31 . AC=1;AF=0.071;AN=14;BaseQRankSum=-0.563;DP=1521;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=54.8434;MQ=164.04;MQ0=1;MQRankSum=-2.419;QD=2.59;ReadPosRankSum=-1.229 GT:AD:DP:GQ:PL 0/1:17,4:21:92.74:93,0,533 0/0:249,1:250:99.0:0,544,6985 0/0:250,0:250:99.0:0,577,6968 0/0:248,2:250:99.0:0,605,7687 0/0:248,1:249:99.0:0,583,7300 0/0:246,2:249:99.0:0,626,7473 0/0:248,1:249:99.0:0,594,7553 chr22 42523209 rs28371730 T C 15556.89 . AC=8;AF=0.571;AN=14;BaseQRankSum=3.458;DB;DP=1509;DS;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=120.8206;MQ=221.07;MQ0=0;MQRankSum=-4.945;QD=10.31;ReadPosRankSum=0.639 GT:AD:DP:GQ:PL 0/1:3,6:9:99.0:154,0,101 1/1:6,237:247:99.0:4532,308,0 0/1:130,117:248:99.0:1399,0,3147 0/1:112,129:244:99.0:2641,0,2556 0/1:115,127:247:99.0:2320,0,2526 0/1:115,128:248:99.0:2546,0,2520 0/1:143,104:249:99.0:1965,0,3288 chr22 42523211 rs2004511 T C 2445.52 . AC=2;AF=0.143;AN=14;BaseQRankSum=10.587;DB;DP=1509;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=102.7564;MQ=221.5;MQ0=0;MQRankSum=-6.926;QD=4.89;ReadPosRankSum=2.057 GT:AD:DP:GQ:PL 0/0:9,0:9:24.06:0,24,289 0/1:136,113:250:99.0:1384,0,2176 0/1:146,104:250:99.0:1108,0,2809 0/0:247,3:250:99.0:0,439,5546 0/0:245,2:249:99.0:0,459,5316 0/0:248,2:250:99.0:0,459,5404 0/0:248,1:250:99.0:0,533,6069 chr22 42523409 rs1985842 G T 6801.9 . AC=6;AF=0.429;AN=14;BaseQRankSum=20.509;DB;DP=1454;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=150.8967;MQ=200.12;MQ0=0;MQRankSum=4.472;QD=5.65;ReadPosRankSum=9.396 GT:AD:DP:GQ:PL 0/1:1,3:4:25.84:53,0,26 0/1:153,95:249:99.0:1597,0,1798 0/0:245,4:250:99.0:0,336,4079 0/1:168,82:250:99.0:1339,0,1880 0/1:147,103:250:99.0:1522,0,1805 0/1:156,94:250:99.0:1341,0,2322 0/1:129,71:201:99.0:949,0,2082 chr22 42523805 rs28371725 C T 1637.33 . AC=1;AF=0.071;AN=14;BaseQRankSum=-0.379;DB;DP=1516;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=77.2321;MQ=226.05;MQ0=0;MQRankSum=2.862;QD=6.55;ReadPosRankSum=0.064 GT:AD:DP:GQ:PL 0/0:16,0:16:39.09:0,39,475 0/0:248,1:249:99.0:0,613,7187 0/1:132,116:248:99.0:1676,0,2916 0/0:248,0:248:99.0:0,625,7171 0/0:248,2:250:99.0:0,604,7252 0/0:250,0:250:99.0:0,631,7426 0/0:248,1:249:99.0:0,584,6964 chr22 42523943 rs16947 A G 23661.1 . AC=8;AF=0.571;AN=14;BaseQRankSum=4.602;DB;DP=1514;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=38.3217;MQ=238.64;MQ0=0;MQRankSum=2.485;QD=15.63;ReadPosRankSum=3.749 GT:AD:DP:GQ:PL 0/1:9,5:14:99.0:163,0,303 1/1:3,246:250:99.0:8092,667,0 0/1:129,116:246:99.0:3190,0,2852 0/1:149,98:247:99.0:2429,0,3588 0/1:129,118:247:99.0:3267,0,3052 0/1:122,123:245:99.0:3428,0,3052 0/1:124,119:244:99.0:3092,0,2845 chr22 42524150 . C G 3758.65 . AC=8;AF=0.571;AN=14;BaseQRankSum=24.314;DP=1506;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=172.5901;MQ=242.92;MQ0=0;MQRankSum=11.537;QD=2.5;ReadPosRankSum=-9.185 GT:AD:DP:GQ:PL 1/1:3,3:6:5.98:46,6,0 0/1:161,88:250:99.0:708,0,300 0/1:161,88:250:99.0:635,0,308 0/1:160,90:250:99.0:658,0,229 0/1:180,69:250:99.0:478,0,113 0/1:176,73:250:99.0:530,0,271 0/1:170,79:249:99.0:704,0,133 chr22 42524435 rs1807313 T A 5252.25 . AC=3;AF=0.214;AN=14;BaseQRankSum=-0.192;DB;DP=1526;DS;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=152.3866;MQ=242.06;MQ0=0;MQRankSum=1.923;QD=9.99;ReadPosRankSum=3.008 GT:AD:DP:GQ:PL 0/1:7,19:26:99.0:456,0,195 0/0:250,0:250:99.0:0,698,8167 0/0:246,2:249:99.0:0,673,7735 0/0:248,2:250:99.0:0,685,7919 0/0:250,0:250:99.0:0,688,7814 0/1:120,126:247:99.0:2539,0,3250 0/1:131,110:246:99.0:2257,0,3278 chr22 42524696 rs58440431 T C 6423.61 . AC=2;AF=0.143;AN=14;BaseQRankSum=3.119;DB;DP=1509;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=53.0005;MQ=230.78;MQ0=0;MQRankSum=2.825;QD=12.85;ReadPosRankSum=2.051 GT:AD:DP:GQ:PL 0/0:9,0:9:27.08:0,27,351 0/1:132,116:250:99.0:3341,0,3914 0/1:141,108:250:99.0:3082,0,3917 0/0:248,1:250:99.0:0,692,8578 0/0:250,0:250:99.0:0,743,8836 0/0:247,2:250:99.0:0,695,8726 0/0:249,1:250:99.0:0,699,8650 chr22 42524947 rs3892097 C T 731.18 . AC=2;AF=0.143;AN=14;BaseQRankSum=0.602;DB;DP=1495;DS;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=154.5421;MQ=217.65;MQ0=0;MQRankSum=4.304;QD=1.47;ReadPosRankSum=1.019 GT:AD:DP:GQ:PL 0/0:3,0:3:8.99:0,9,89 0/1:108,75:244:99.0:403,0,1684 0/1:125,74:242:99.0:375,0,2335 0/0:227,1:249:99.0:0,460,5036 0/0:226,1:247:99.0:0,448,4884 0/0:192,1:247:99.0:0,400,4405 0/0:194,1:247:99.0:0,405,4694 chr22 42525132 rs1058164 G C 14639.91 . AC=5;AF=0.357;AN=14;BaseQRankSum=4.944;DB;DP=1508;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=38.1229;MQ=207.02;MQ0=6;MQRankSum=2.51;QD=11.71;ReadPosRankSum=0.306 GT:AD:DP:GQ:PL 0/0:8,0:8:24.05:0,24,309 0/1:125,125:250:99.0:3147,0,3294 0/0:245,1:248:99.0:0,549,7172 0/1:139,109:248:99.0:2470,0,3232 0/1:136,107:243:99.0:2545,0,3408 0/1:116,130:247:99.0:3206,0,2926 0/1:122,124:247:99.0:3271,0,3300 chr22 42525772 rs28371706 G A 7552.52 . AC=4;AF=0.286;AN=14;BaseQRankSum=12.028;DB;DP=1506;DS;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=89.8512;MQ=222.09;MQ0=0;MQRankSum=5.2;QD=9.99;ReadPosRankSum=2.275 GT:AD:DP:GQ:PL 0/1:4,2:6:29.34:29,0,147 0/0:249,0:249:99.0:0,592,6835 0/0:249,1:250:99.0:0,590,7041 0/0:248,0:248:99.0:0,652,7316 0/1:126,120:248:99.0:2668,0,2833 0/1:134,113:247:99.0:2453,0,2485 0/1:137,113:250:99.0:2403,0,2988 chr22 42525798 rs28371705 G C 1954.58 . AC=2;AF=0.143;AN=14;BaseQRankSum=6.229;DB;DP=1509;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=36.0442;MQ=228.55;MQ0=0;MQRankSum=0.852;QD=3.91;ReadPosRankSum=6.52 GT:AD:DP:GQ:PL 0/0:9,0:9:27.08:0,27,342 0/1:164,85:250:99.0:981,0,3519 0/1:171,79:250:99.0:1020,0,3665 0/0:249,1:250:99.0:0,526,6474 0/0:249,1:250:99.0:0,550,6481 0/0:248,2:250:99.0:0,542,6933 0/0:250,0:250:99.0:0,604,7282 chr22 42525811 rs28371704 T C 3688.26 . AC=2;AF=0.143;AN=14;BaseQRankSum=4.752;DB;DP=1510;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=36.9902;MQ=210.28;MQ0=0;MQRankSum=2.309;QD=7.38;ReadPosRankSum=6.262 GT:AD:DP:GQ:PL 0/0:10,0:10:27.06:0,27,333 0/1:163,86:249:99.0:1958,0,3391 0/1:167,78:245:99.0:1730,0,3945 0/0:248,1:249:99.0:0,542,6887 0/0:246,1:247:99.0:0,550,6569 0/0:247,1:250:99.0:0,548,6954 0/0:249,1:250:99.0:0,557,7079 chr22 42525821 rs28371703 G T 3940.9 . AC=2;AF=0.143;AN=14;BaseQRankSum=4.652;DB;DP=1510;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=34.0483;MQ=210.28;MQ0=0;MQRankSum=2.924;QD=7.88;ReadPosRankSum=5.487 GT:AD:DP:GQ:PL 0/0:10,0:10:24.08:0,24,317 0/1:164,85:250:99.0:2033,0,3659 0/1:167,79:249:99.0:1907,0,4271 0/0:249,1:250:99.0:0,565,7321 0/0:249,1:250:99.0:0,545,7102 0/0:248,2:250:99.0:0,536,7254 0/0:249,0:250:99.0:0,605,7633 chr22 42525952 rs71328650 C A 5872.92 . AC=7;AF=0.5;AN=14;BaseQRankSum=25.986;DB;DP=1505;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=144.2979;MQ=173.55;MQ0=0;MQRankSum=3.66;QD=4.68;ReadPosRankSum=7.152 GT:AD:DP:GQ:PL 1/1:2,3:5:6.0:53,6,0 0/1:132,117:250:99.0:1397,0,702 0/0:248,1:250:99.0:0,245,2219 0/1:166,83:250:99.0:1151,0,934 0/1:164,86:250:99.0:1070,0,1147 0/1:170,80:250:99.0:1009,0,1141 0/1:162,87:250:99.0:1194,0,1085 chr22 42526049 . C G 8544.41 . AC=10;AF=0.714;AN=14;BaseQRankSum=-8.121;DP=1505;DS;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=241.7335;MQ=162.18;MQ0=2;MQRankSum=-1.399;QD=6.81;ReadPosRankSum=2.132 GT:AD:DP:GQ:PL 1/1:0,5:5:3.0:26,3,0 0/1:86,162:248:99.0:1053,0,1167 0/0:235,12:248:99.0:0,378,3886 0/1:108,137:245:99.0:782,0,1662 1/1:3,242:245:99.0:2351,264,0 1/1:5,245:250:99.0:2193,222,0 1/1:4,242:246:99.0:2140,240,0 chr22 42526449 . T A 151.47 . AC=1;AF=0.071;AN=14;BaseQRankSum=2.662;DP=1226;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=41.2083;MQ=240.47;MQ0=0;MQRankSum=0.578;QD=4.89;ReadPosRankSum=3.611 GT:AD:DP:GQ:PL 0/1:23,8:31:99.0:190,0,694 0/0:188,0:190:99.0:0,478,5376 0/0:187,0:187:99.0:0,493,5322 0/0:247,0:249:99.0:0,634,6728 0/0:185,0:185:99.0:0,487,5515 0/0:202,0:202:99.0:0,520,5857 0/0:181,1:182:99.0:0,440,5362 chr22 42526484 rs28371699 A C 4220.99 . AC=6;AF=0.429;AN=14;BaseQRankSum=-17.855;DB;DP=1532;DS;Dels=0.02;FS=0.0;HRun=0;HaplotypeScore=136.8893;MQ=233.92;MQ0=0;MQRankSum=3.448;QD=3.29;ReadPosRankSum=-2.663 GT:AD:DP:GQ:PL 0/1:16,15:31:99.0:238,0,428 0/1:112,135:247:99.0:796,0,1908 0/0:227,13:241:99.0:0,433,4747 0/1:108,133:242:99.0:588,0,2014 0/1:90,154:245:99.0:1055,0,1892 0/1:112,131:246:99.0:741,0,2222 0/1:108,137:246:99.0:803,0,2266 chr22 42526549 rs56011157 C T 14276.31 . AC=8;AF=0.571;AN=14;BaseQRankSum=17.75;DB;DP=1537;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=87.3394;MQ=231.34;MQ0=0;MQRankSum=4.781;QD=9.29;ReadPosRankSum=7.463 GT:AD:DP:GQ:PL 0/1:22,15:37:99.0:251,0,330 1/1:23,227:250:99.0:5404,430,0 0/1:151,98:250:99.0:1878,0,2475 0/1:153,97:250:99.0:1769,0,2410 0/1:149,100:250:99.0:1792,0,2569 0/1:164,84:250:99.0:1440,0,2646 0/1:149,98:248:99.0:1742,0,2601 chr22 42526561 rs28695233 G T 4524.61 . AC=7;AF=0.5;AN=14;BaseQRankSum=9.714;DB;DP=1538;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=98.8415;MQ=220.45;MQ0=0;MQRankSum=9.43;QD=3.02;ReadPosRankSum=7.682 GT:AD:DP:GQ:PL 0/0:22,15:38:15.74:0,16,609 1/1:4,240:249:99.0:2685,237,0 0/1:142,108:250:99.0:505,0,3133 0/1:138,109:249:99.0:521,0,3281 0/1:150,99:249:99.0:336,0,3601 0/1:153,93:250:99.0:194,0,3695 0/1:148,97:249:99.0:283,0,3093 chr22 42526562 rs75276289 G C 3780.51 . AC=6;AF=0.429;AN=14;BaseQRankSum=15.2;DB;DP=1540;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=116.437;MQ=215.67;MQ0=0;MQRankSum=9.072;QD=2.52;ReadPosRankSum=10.863 GT:AD:DP:GQ:PL 0/0:25,15:40:17.73:0,18,633 0/1:50,199:250:99.0:1522,0,283 0/1:143,106:250:99.0:600,0,2844 0/1:143,107:250:99.0:605,0,3002 0/1:151,99:250:99.0:432,0,3352 0/1:157,93:250:99.0:254,0,3483 0/1:149,99:248:99.0:368,0,2999 chr22 42526567 rs76312385 G A 434.33 . AC=1;AF=0.071;AN=14;BaseQRankSum=18.089;DB;DP=1540;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=89.3746;MQ=219.8;MQ0=0;MQRankSum=6.196;QD=1.74;ReadPosRankSum=7.564 GT:AD:DP:GQ:PL 0/0:22,18:40:4.68:0,5,427 0/1:34,215:250:56.26:473,0,56 0/0:142,108:250:20.78:0,21,2288 0/0:142,108:250:49.48:0,49,2451 0/0:152,97:250:99.0:0,210,2801 0/0:150,100:250:34.96:0,35,2515 0/0:148,102:250:77.19:0,77,2590 chr22 42526571 rs74644586 C G 339.6 . AC=1;AF=0.071;AN=14;BaseQRankSum=-11.48;DB;DP=1540;DS;Dels=0.02;FS=0.0;HRun=4;HaplotypeScore=93.3402;MQ=218.52;MQ0=0;MQRankSum=3.709;QD=1.36;ReadPosRankSum=6.322 GT:AD:DP:GQ:PL 0/0:22,18:40:36.46:0,36,689 0/1:4,232:239:30.49:378,0,30 0/0:138,110:249:99.0:0,295,4017 0/0:137,111:249:99.0:0,250,4041 0/0:147,97:245:99.0:0,321,4348 0/0:150,97:247:99.0:0,358,4657 0/0:144,101:247:99.0:0,275,4123 chr22 42526573 rs1080996 T G 12579.34 . AC=8;AF=0.571;AN=14;BaseQRankSum=6.163;DB;DP=1540;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=76.655;MQ=224.49;MQ0=0;MQRankSum=1.355;QD=8.17;ReadPosRankSum=5.794 GT:AD:DP:GQ:PL 0/1:22,18:40:99.0:200,0,668 1/1:4,244:248:99.0:5175,439,0 0/1:136,110:250:99.0:1862,0,3521 0/1:136,113:249:99.0:1734,0,3677 0/1:144,99:250:99.0:1119,0,3818 0/1:150,99:250:99.0:1196,0,4178 0/1:145,104:250:99.0:1293,0,3628 chr22 42526580 rs1080995 G C 16619.47 . AC=8;AF=0.571;AN=14;BaseQRankSum=7.991;DB;DP=1541;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=56.1489;MQ=221.29;MQ0=0;MQRankSum=2.223;QD=10.78;ReadPosRankSum=4.443 GT:AD:DP:GQ:PL 0/1:22,19:41:99.0:335,0,664 1/1:15,234:250:99.0:5895,337,0 0/1:137,113:250:99.0:2421,0,3301 0/1:134,116:250:99.0:2262,0,3430 0/1:144,105:250:99.0:1929,0,3421 0/1:148,101:250:99.0:1778,0,3867 0/1:142,108:250:99.0:1999,0,3334 chr22 42526634 . T C 32.6 . AC=1;AF=0.071;AN=14;BaseQRankSum=1.147;DP=1225;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=50.0151;MQ=240.65;MQ0=0;MQRankSum=1.151;QD=1.3;ReadPosRankSum=1.276 GT:AD:DP:GQ:PL 0/1:21,4:25:71.04:71,0,702 0/0:187,2:189:99.0:0,481,6080 0/0:233,0:233:99.0:0,667,7351 0/0:230,0:230:99.0:0,667,7394 0/0:174,1:175:99.0:0,446,5469 0/0:194,2:196:99.0:0,498,6239 0/0:174,0:175:99.0:0,511,5ok testWrite (vcf.test.test_vcf.TestBcfToolsOutputWriter) ... 894 chr22 42526679 . G C 60.6 . AC=1;AF=0.071;AN=14;BaseQRankSum=-12.425;DP=1525;DS;Dels=0.09;FS=0.0;HRun=1;HaplotypeScore=331.3182;MQ=215.48;MQ0=0;MQRankSum=-14.68;QD=0.24;ReadPosRankSum=-13.323 GT:AD:DP:GQ:PL 0/0:23,0:23:66.17:0,66,829 0/1:175,56:232:99.0:99,0,4273 0/0:199,26:226:76.45:0,76,5104 0/0:196,37:233:41.98:0,42,5109 0/0:170,47:218:99.0:0,162,4505 0/0:188,36:224:99.0:0,230,4974 0/0:177,47:225:99.0:0,167,4592 chr22 42526694 rs1065852 G A 4420.63 . AC=2;AF=0.143;AN=14;BaseQRankSum=8.566;DB;DP=1529;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=117.6833;MQ=214.96;MQ0=0;MQRankSum=5.852;QD=8.84;ReadPosRankSum=1.454 GT:AD:DP:GQ:PL 0/0:29,0:29:81.24:0,81,1040 0/1:136,114:250:99.0:2333,0,3170 0/1:145,104:250:99.0:2087,0,2794 0/0:250,0:250:99.0:0,586,6963 0/0:247,2:250:99.0:0,497,6185 0/0:248,2:250:99.0:0,544,6640 0/0:250,0:250:99.0:0,571,6444 chr22 42527471 rs28633410 T C 26831.16 . AC=10;AF=0.833;AN=12;BaseQRankSum=-1.092;DB;DP=1501;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=79.3853;MQ=176.86;MQ0=0;MQRankSum=-2.644;QD=17.89;ReadPosRankSum=2.185 GT:AD:DP:GQ:PL ./.:.:.:.:. 1/1:1,249:250:99.0:5741,478,0 0/1:102,148:250:99.0:3026,0,1748 0/1:115,132:250:99.0:2716,0,1896 1/1:1,249:250:99.0:5040,392,0 1/1:1,248:250:99.0:5109,427,0 1/1:4,245:249:99.0:5199,306,0 chr22 42527533 rs28624811 A G 13619.46 . AC=7;AF=0.583;AN=12;BaseQRankSum=-8.893;DB;DP=1501;DS;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=86.1948;MQ=179.18;MQ0=0;MQRankSum=0.472;QD=9.08;ReadPosRankSum=0.778 GT:AD:DP:GQ:PL ./.:.:.:.:. 1/1:2,241:243:99.0:4171,416,0 0/1:113,132:245:99.0:2000,0,2018 0/1:120,126:246:99.0:1781,0,1970 0/1:131,118:249:99.0:1885,0,1784 0/1:122,126:248:99.0:1893,0,1807 0/1:122,127:249:99.0:1890,0,2119 chr22 42527793 rs1080989 C T 3454.66 . AC=2;AF=0.167;AN=12;BaseQRankSum=-3.007;DB;DP=1074;DS;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=75.7865;MQ=209.0;MQ0=0;MQRankSum=3.014;QD=9.36;ReadPosRankSum=0.618 GT:AD:DP:GQ:PL ./.:.:.:.:. 0/1:72,90:162:99.0:1699,0,1767 0/1:103,96:202:99.0:1756,0,2532 0/0:188,0:188:99.0:0,526,5889 0/0:160,0:160:99.0:0,457,4983 0/0:197,0:198:99.0:0,544,6100 0/0:156,0:156:99.0:0,439,5041 chr22 42527891 . T A 109.83 . AC=5;AF=0.417;AN=12;BaseQRankSum=11.235;DP=1500;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=638.4601;MQ=166.82;MQ0=0;MQRankSum=1.444;QD=0.09;ReadPosRankSum=0.839 GT:AD:DP:GQ:PL ./.:.:.:.:. 0/1:238,7:248:13.7:14,0,38 0/0:246,3:250:5.97:0,6,45 0/1:239,11:250:31.42:31,0,54 0/1:232,16:250:49.09:49,0,76 0/1:233,14:249:52.1:52,0,53 0/1:238,11:250:12.71:13,0,36 ##fileformat=VCFv4.1 ##samtoolsVersion=0.1.18 (r982:295) ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT sample MT 1 . G . 283 . DP=245;DP4=240,0,0,0;MQ=30;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 2 . A . 283 . DP=250;DP4=247,0,0,0;MQ=31;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 3 . T . 283 . DP=253;DP4=252,0,0,0;MQ=31;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 4 . C . 283 . DP=257;DP4=253,0,0,0;MQ=32;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 5 . A . 283 . DP=263;DP4=258,0,0,0;MQ=32;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 6 . C . 283 . DP=268;DP4=259,0,0,0;MQ=33;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 7 . A . 283 . DP=272;DP4=265,0,2,0;MQ=34;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.9e-05,0.32,1.0;VDB=0.0111 PL 0 MT 8 . G . 283 . DP=275;DP4=272,0,0,0;MQ=34;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 9 . G . 283 . DP=276;DP4=266,0,1,0;MQ=34;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.006,0.36,0.13 PL 0 MT 10 . T . 283 . DP=277;DP4=269,0,1,0;MQ=34;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.7e-05,0.36,1.0;VDB=0.0 PL 0 MT 11 . C . 283 . DP=279;DP4=274,0,1,0;MQ=34;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0031,0.36,0.12 PL 0 MT 12 . T . 283 . DP=286;DP4=284,0,0,0;MQ=35;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 13 . A . 283 . DP=289;DP4=281,0,0,0;MQ=36;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 14 . T . 283 . DP=290;DP4=288,0,0,0;MQ=36;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 15 . C . 283 . DP=290;DP4=280,0,0,0;MQ=36;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 16 . A . 283 . DP=293;DP4=290,0,0,0;MQ=36;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 17 . C . 283 . DP=297;DP4=290,0,0,0;MQ=36;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0111 PL 0 MT 18 . C . 283 . DP=298;DP4=284,0,0,0;MQ=37;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 19 . C . 283 . DP=301;DP4=293,0,1,0;MQ=37;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.0,0.32,0.38;VDB=0.0111 PL 0 MT 20 . T . 283 . DP=311;DP4=307,0,0,0;MQ=37;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 21 . A . 283 . DP=311;DP4=305,0,0,0;MQ=38;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 22 . T . 283 . DP=305;DP4=303,0,0,0;MQ=38;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 23 . T . 283 . DP=309;DP4=305,0,0,0;MQ=38;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 24 . A . 283 . DP=309;DP4=301,0,0,0;MQ=39;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 25 . A . 283 . DP=308;DP4=302,0,1,0;MQ=39;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.2e-09,0.28,1.0 PL 0 MT 26 . C . 283 . DP=309;DP4=302,0,0,0;MQ=39;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 27 . C . 283 . DP=307;DP4=293,0,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 28 . A . 283 . DP=309;DP4=305,0,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 29 . C . 283 . DP=308;DP4=302,0,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 30 . T . 283 . DP=305;DP4=303,0,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 31 . C . 283 . DP=302;DP4=293,0,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 32 . A . 283 . DP=303;DP4=294,0,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 33 . C . 283 . DP=300;DP4=287,0,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 34 . G . 280 . DP=296;DP4=288,0,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 35 . G . 283 . DP=296;DP4=280,0,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0111 PL 0 MT 36 . G . 283 . DP=291;DP4=272,0,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 37 . A . 283 . DP=290;DP4=276,0,1,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00038,0.22,1.0;VDB=0.0212 PL 0 MT 38 . G . 283 . DP=288;DP4=282,0,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 39 . C . 283 . DP=289;DP4=264,0,2,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.3e-11,1.0,1.0;VDB=0.004 PL 0 MT 40 . T . 283 . DP=288;DP4=285,0,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 41 . C . 283 . DP=284;DP4=276,0,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 42 . T . 283 . DP=279;DP4=277,0,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 43 . C . 283 . DP=279;DP4=268,0,0,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 44 . C . 283 . DP=280;DP4=265,0,1,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0064,0.17,1.0 PL 0 MT 45 . A . 283 . DP=279;DP4=272,0,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 46 . T . 283 . DP=279;DP4=276,0,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 47 . G . 283 . DP=280;DP4=277,0,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 48 . C . 283 . DP=281;DP4=271,0,0,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 49 . A . 283 . DP=278;DP4=272,0,0,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0051 PL 0 MT 50 . T . 283 . DP=276;DP4=274,0,0,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 51 . T . 283 . DP=271;DP4=261,0,0,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 52 . T . 283 . DP=271;DP4=262,0,0,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 53 . G . 283 . DP=273;DP4=271,0,0,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 54 . G . 283 . DP=274;DP4=264,0,0,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 55 . T . 283 . DP=271;DP4=268,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 56 . A . 283 . DP=274;DP4=266,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 57 . T . 283 . DP=272;DP4=270,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 58 . T . 283 . DP=273;DP4=266,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 59 . T . 283 . DP=277;DP4=272,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 60 . T . 283 . DP=279;DP4=272,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 61 . C . 283 . DP=285;DP4=275,0,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 62 . G . 283 . DP=285;DP4=278,0,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-08,0.097,0.066 PL 0 MT 63 . T . 283 . DP=285;DP4=285,0,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 64 . C . 283 . DP=283;DP4=276,0,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 65 . T . 283 . DP=277;DP4=277,0,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 66 . G . 283 . DP=276;DP4=274,0,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 67 . G . 283 . DP=275;DP4=264,0,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 68 . G . 283 . DP=281;DP4=265,0,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 69 . G . 283 . DP=288;DP4=269,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 70 . G . 283 . DP=296;DP4=275,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 71 . G . 283 . DP=300;DP4=272,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 72 . T . 283 . DP=301;DP4=285,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0367 PL 0 MT 73 . A . 283 . DP=295;DP4=283,0,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0066,1.0,1.0 PL 0 MT 74 . T . 283 . DP=298;DP4=298,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 75 . G . 283 . DP=300;DP4=299,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 76 . C . 283 . DP=304;DP4=281,0,2,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.3e-13,1.0,1.0;VDB=0.0342 PL 0 MT 77 . A . 283 . DP=303;DP4=293,0,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00064,0.019,0.25;VDB=0.02 PL 0 MT 78 . C . 283 . DP=302;DP4=283,0,3,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.1e-13,0.21,0.36;VDB=0.0026 PL 0 MT 79 . G . 283 . DP=301;DP4=285,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 80 . C . 283 . DP=308;DP4=286,0,1,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,9.8e-07,0.0098,0.14;VDB=0.0217 PL 0 MT 81 . G . 282 . DP=314;DP4=302,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 82 . A . 283 . DP=313;DP4=296,0,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.013,0.069,0.1;VDB=0.0049 PL 0 MT 83 . T . 283 . DP=316;DP4=313,0,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0029,1.0,1.0;VDB=0.02 PL 0 MT 84 . A . 283 . DP=316;DP4=302,0,1,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-05,0.0044,1.0 PL 0 MT 85 . G . 283 . DP=314;DP4=314,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 86 . C . 283 . DP=318;DP4=297,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0198 PL 0 MT 87 . A . 283 . DP=324;DP4=316,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 88 . T . 283 . DP=326;DP4=325,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 89 . T . 283 . DP=328;DP4=313,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-08,1.0,0.064 PL 0 MT 90 . G . 283 . DP=329;DP4=326,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0193 PL 0 MT 91 . C . 283 . DP=328;DP4=310,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.2e-05,1.0,0.37 PL 0 MT 92 . G . 278 . DP=327;DP4=314,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.17,1.0,0.2;VDB=0.0237 PL 0 MT 93 . A . 283 . DP=328;DP4=310,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 94 . G . 283 . DP=327;DP4=327,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 95 . A . 283 . DP=323;DP4=308,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.8e-05,0.002,1.0 PL 0 MT 96 . C . 283 . DP=323;DP4=305,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.17,1.0,1.0 PL 0 MT 97 . G . 275 . DP=321;DP4=311,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 98 . C . 283 . DP=322;DP4=301,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0006 PL 0 MT 99 . T . 283 . DP=327;DP4=327,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 100 . G . 283 . DP=332;DP4=332,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 101 . G . 283 . DP=332;DP4=306,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 102 . A . 283 . DP=331;DP4=290,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.005 PL 0 MT 103 . G . 283 . DP=329;DP4=321,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0342 PL 0 MT 104 . C . 283 . DP=330;DP4=273,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0026,1.0,0.047;VDB=0.0003 PL 0 MT 105 . C . 283 . DP=338;DP4=302,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 106 . G . 283 . DP=343;DP4=314,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 107 . G . 283 . DP=344;DP4=300,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 108 . A . 283 . DP=347;DP4=305,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0302 PL 0 MT 109 . G . 283 . DP=348;DP4=344,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 110 . C . 283 . DP=341;DP4=279,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.4e-06,1.4e-08,1.0;VDB=0.0445 PL 0 MT 111 . A . 283 . DP=343;DP4=321,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0233 PL 0 MT 112 . C . 283 . DP=348;DP4=300,0,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.2e-08,7.4e-07,0.16;VDB=0.0169 PL 0 MT 113 . C . 283 . DP=350;DP4=307,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.8e-08,1.0,0.38;VDB=0.0252 PL 0 MT 114 . C . 283 . DP=351;DP4=307,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 115 . T . 283 . DP=351;DP4=346,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0025 PL 0 MT 116 . A . 283 . DP=352;DP4=317,0,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.3e-07,0.0073,0.45;VDB=0.0183 PL 0 MT 117 . T . 283 . DP=355;DP4=351,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0025 PL 0 MT 118 . G . 283 . DP=352;DP4=348,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0306 PL 0 MT 119 . T . 283 . DP=353;DP4=345,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.005,1.0,1.0;VDB=0.0335 PL 0 MT 120 . C . 283 . DP=354;DP4=331,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00033,1.0,0.14;VDB=0.044 PL 0 MT 121 . G . 283 . DP=356;DP4=311,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 122 . C . 283 . DP=353;DP4=304,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0064,1.0,0.29;VDB=0.0237 PL 0 MT 123 . A . 283 . DP=357;DP4=332,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0141 PL 0 MT 124 . G . 283 . DP=357;DP4=353,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 125 . T . 283 . DP=359;DP4=347,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0037,1.0,1.0;VDB=0.0302 PL 0 MT 126 . A . 283 . DP=360;DP4=327,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00072,0.0069,0.13;VDB=0.0215 PL 0 MT 127 . T . 283 . DP=358;DP4=355,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,9.7e-05,5e-08,0.14;VDB=0.0245 PL 0 MT 128 . C . 283 . DP=360;DP4=336,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0335 PL 0 MT 129 . T . 283 . DP=360;DP4=356,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00053,0.0013,1.0 PL 0 MT 130 . G . 283 . DP=357;DP4=355,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0141 PL 0 MT 131 . T . 283 . DP=360;DP4=351,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0057 PL 0 MT 132 . C . 283 . DP=359;DP4=338,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0367 PL 0 MT 133 . T . 283 . DP=358;DP4=353,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00063,0.0012,1.0;VDB=0.0033 PL 0 MT 134 . T . 283 . DP=357;DP4=326,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 135 . T . 283 . DP=356;DP4=322,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 136 . G . 283 . DP=358;DP4=353,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 137 . A . 283 . DP=358;DP4=317,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0044 PL 0 MT 138 . T . 283 . DP=358;DP4=355,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.025 PL 0 MT 139 . T . 283 . DP=360;DP4=328,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 140 . C . 283 . DP=356;DP4=338,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0065,2.6e-06,0.23;VDB=0.0367 PL 0 MT 141 . C . 283 . DP=360;DP4=321,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.012,1.0,0.13 PL 0 MT 142 . T . 283 . DP=362;DP4=357,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0342 PL 0 MT 143 . G . 283 . DP=360;DP4=353,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0017,1.0,0.18;VDB=0.0183 PL 0 MT 144 . C . 283 . DP=364;DP4=325,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0101 PL 0 MT 145 . C . 283 . DP=363;DP4=330,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0063 PL 0 MT 146 . T . 283 . DP=361;DP4=358,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0207 PL 0 MT 147 . C . 283 . DP=362;DP4=357,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 148 . A . 283 . DP=363;DP4=347,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0051 PL 0 MT 149 . T . 283 . DP=363;DP4=363,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 150 . C . 283 . DP=363;DP4=350,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0168 PL 0 MT 151 . C . 283 . DP=359;DP4=337,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.7e-05,1.0,0.077 PL 0 MT 152 . T . 283 . DP=355;DP4=352,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.028,1.0,1.0;VDB=0.0237 PL 0 MT 153 . A . 283 . DP=354;DP4=327,0,5,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.001,0.15,0.009;VDB=0.0115 PL 0 MT 154 . T . 283 . DP=353;DP4=349,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0051 PL 0 MT 155 . T . 283 . DP=357;DP4=343,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 156 . A . 283 . DP=357;DP4=337,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.021 PL 0 MT 157 . T . 283 . DP=356;DP4=355,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 158 . T . 283 . DP=351;DP4=333,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 159 . T . 283 . DP=343;DP4=321,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 160 . A . 283 . DP=337;DP4=313,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 161 . T . 283 . DP=336;DP4=334,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,7.6e-06,1.0,1.0 PL 0 MT 162 . C . 283 . DP=333;DP4=314,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0245 PL 0 MT 163 . G . 278 . DP=328;DP4=308,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.02 PL 0 MT 164 . C . 283 . DP=328;DP4=306,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0212 PL 0 MT 165 . A . 283 . DP=330;DP4=319,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0026,1.0,0.18;VDB=0.0167 PL 0 MT 166 . C . 283 . DP=332;DP4=308,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.6e-07,1.0,1.0;VDB=0.0134 PL 0 MT 167 . C . 283 . DP=330;DP4=310,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3e-05,1.0,1.0 PL 0 MT 168 . T . 283 . DP=329;DP4=329,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 169 . A . 283 . DP=332;DP4=314,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 170 . C . 283 . DP=327;DP4=307,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0013,1.0,1.0;VDB=0.0144 PL 0 MT 171 . G . 283 . DP=326;DP4=315,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 172 . T . 283 . DP=325;DP4=323,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0086 PL 0 MT 173 . T . 283 . DP=324;DP4=311,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 174 . C . 283 . DP=321;DP4=307,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.4e-06,1.0,0.32;VDB=0.0227 PL 0 MT 175 . A . 283 . DP=323;DP4=312,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0183 PL 0 MT 176 . A . 283 . DP=320;DP4=306,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00011,1.0,1.0 PL 0 MT 177 . T . 283 . DP=317;DP4=317,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 178 . A . 283 . DP=321;DP4=313,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 179 . T . 283 . DP=322;DP4=322,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 180 . T . 283 . DP=324;DP4=307,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 181 . A . 283 . DP=323;DP4=311,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 182 . C . 283 . DP=323;DP4=302,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.12,1.7e-06,1.0;VDB=0.016 PL 0 MT 183 . A . 283 . DP=326;DP4=318,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0096 PL 0 MT 184 . G . 283 . DP=328;DP4=325,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1e-05,1.0,0.37;VDB=0.0128 PL 0 MT 185 . G . 283 . DP=328;DP4=298,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.8e-06,1.0,1.0 PL 0 MT 186 . C . 283 . DP=324;DP4=295,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0238 PL 0 MT 187 . G . 283 . DP=325;DP4=305,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 188 . A . 283 . DP=326;DP4=301,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0032,1.0,1.0;VDB=0.0335 PL 0 MT 189 . A . 283 . DP=324;DP4=300,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 190 . C . 283 . DP=322;DP4=298,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.9e-06,7.9e-07,1.0;VDB=0.0192 PL 0 MT 191 . A . 283 . DP=324;DP4=313,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0009 PL 0 MT 192 . T . 283 . DP=321;DP4=320,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 193 . A . 283 . DP=329;DP4=307,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.003,1.0,0.11;VDB=0.0299 PL 0 MT 194 . C . 283 . DP=332;DP4=301,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3e-05,1.0,0.071;VDB=0.0429 PL 0 MT 195 . T . 283 . DP=329;DP4=327,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0121 PL 0 MT 196 . T . 283 . DP=326;DP4=308,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 197 . A . 283 . DP=328;DP4=311,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 198 . C . 283 . DP=329;DP4=310,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.3e-05,1.0,0.25;VDB=0.0187 PL 0 MT 199 . T . 283 . DP=329;DP4=327,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 200 . A . 283 . DP=333;DP4=321,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.022 PL 0 MT 201 . A . 283 . DP=331;DP4=315,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 202 . A . 283 . DP=332;DP4=311,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 203 . G . 283 . DP=327;DP4=324,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0021,1.0,0.093;VDB=0.0123 PL 0 MT 204 . T . 283 . DP=326;DP4=318,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.1e-05,9.1e-07,0.23;VDB=0.0025 PL 0 MT 205 . G . 283 . DP=329;DP4=326,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 206 . T . 283 . DP=331;DP4=322,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00013,2.1e-07,0.23;VDB=0.0044 PL 0 MT 207 . G . 283 . DP=333;DP4=330,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 208 . T . 283 . DP=332;DP4=332,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 209 . T . 283 . DP=332;DP4=318,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 210 . A . 283 . DP=332;DP4=319,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.9e-05,2.5e-06,1.0 PL 0 MT 211 . A . 283 . DP=334;DP4=324,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 212 . T . 283 . DP=335;DP4=335,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 213 . T . 283 . DP=335;DP4=325,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 214 . A . 283 . DP=338;DP4=330,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 215 . A . 283 . DP=333;DP4=323,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 216 . T . 283 . DP=331;DP4=331,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 217 . T . 283 . DP=332;DP4=324,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 218 . A . 283 . DP=332;DP4=327,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.1e-12,0.00014,0.25;VDB=0.0072 PL 0 MT 219 . A . 283 . DP=331;DP4=324,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 220 . T . 283 . DP=331;DP4=330,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.3e-07,0.00018,0.4 PL 0 MT 221 . G . 283 . DP=330;DP4=328,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 222 . C . 283 . DP=333;DP4=320,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0248 PL 0 MT 223 . T . 283 . DP=329;DP4=327,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0198 PL 0 MT 224 . T . 283 . DP=328;DP4=320,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 225 . G . 283 . DP=331;DP4=330,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 226 . T . 283 . DP=329;DP4=327,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 227 . A . 283 . DP=324;DP4=316,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 228 . G . 283 . DP=321;DP4=320,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2e-06,0.00026,1.0 PL 0 MT 229 . G . 283 . DP=318;DP4=304,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 230 . A . 283 . DP=320;DP4=311,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 231 . C . 283 . DP=319;DP4=309,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 232 . A . 283 . DP=317;DP4=309,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 233 . T . 283 . DP=319;DP4=319,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 234 . A . 283 . DP=314;DP4=308,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 235 . A . 283 . DP=314;DP4=307,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 236 . T . 283 . DP=318;DP4=317,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.1e-10,1.0,0.44 PL 0 MT 237 . A . 283 . DP=320;DP4=313,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00077,1.0,0.1;VDB=0.0168 PL 0 MT 238 . A . 283 . DP=318;DP4=313,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 239 . T . 283 . DP=316;DP4=316,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 240 . A . 283 . DP=315;DP4=310,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 241 . A . 283 . DP=314;DP4=309,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.036,1.0,1.0;VDB=0.016 PL 0 MT 242 . C . 283 . DP=314;DP4=305,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0183 PL 0 MT 243 . A . 283 . DP=316;DP4=313,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 244 . A . 283 . DP=320;DP4=314,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 245 . T . 283 . DP=316;DP4=316,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 246 . T . 283 . DP=319;DP4=311,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 247 . G . 283 . DP=323;DP4=322,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 248 . A . 283 . DP=327;DP4=320,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 249 . A . 283 . DP=328;DP4=318,0,1,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.7e-07,0.00026,1.0 PL 0 MT 250 . T . 283 . DP=326;DP4=324,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 251 . G . 283 . DP=323;DP4=323,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 252 . T . 283 . DP=324;DP4=322,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0217 PL 0 MT 253 . C . 283 . DP=328;DP4=322,0,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,5.7e-05,1.0,0.41;VDB=0.0158 PL 0 MT 254 . T . 283 . DP=324;DP4=324,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 255 . G . 283 . DP=319;DP4=318,0,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.7e-08,1.0,0.033 PL 0 MT 256 . C . 283 . DP=312;DP4=303,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 257 . A . 283 . DP=312;DP4=307,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 258 . C . 283 . DP=313;DP4=303,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 259 . A . 283 . DP=312;DP4=300,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0069 PL 0 MT 260 . G . 283 . DP=309;DP4=307,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 261 . C . 283 . DP=303;DP4=290,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 262 . C . 283 . DP=303;DP4=286,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 263 . A G 210 . DP=302;DP4=0,0,289,0;MQ=56;FQ=-282.0;AF1=1.0;AC1=2.0;VDB=0.0417 GT:PL:GQ 1/1:243,255,0:99 MT 264 . C . 283 . DP=309;DP4=290,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.018 PL 0 MT 265 . T . 283 . DP=311;DP4=310,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 266 . T . 283 . DP=311;DP4=298,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 267 . T . 283 . DP=310;DP4=293,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 268 . C . 283 . DP=308;DP4=298,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0214 PL 0 MT 269 . C . 283 . DP=307;DP4=293,0,2,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.4e-10,1.0,0.1;VDB=0.0183 PL 0 MT 270 . A . 283 . DP=306;DP4=300,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 271 . C . 283 . DP=307;DP4=298,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 272 . A . 283 . DP=308;DP4=300,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 273 . C . 283 . DP=306;DP4=296,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 274 . A . 283 . DP=303;DP4=294,0,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0016,0.05,1.0 PL 0 MT 275 . G . 283 . DP=308;DP4=306,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 276 . A . 283 . DP=308;DP4=289,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0253 PL 0 MT 277 . C . 283 . DP=307;DP4=291,0,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.04,1.0,0.18;VDB=0.0163 PL 0 MT 278 . A . 283 . DP=305;DP4=295,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0144 PL 0 MT 279 . T . 283 . DP=303;DP4=303,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 280 . C . 283 . DP=300;DP4=296,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 281 . A . 283 . DP=298;DP4=294,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 282 . T . 283 . DP=298;DP4=298,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 283 . A . 283 . DP=292;DP4=281,0,2,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.5e-06,0.094,0.37;VDB=0.0183 PL 0 MT 284 . A . 283 . DP=287;DP4=278,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 285 . C . 283 . DP=283;DP4=278,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0121 PL 0 MT 286 . A . 283 . DP=279;DP4=274,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 287 . A . 283 . DP=273;DP4=265,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 288 . A . 283 . DP=270;DP4=260,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 289 . A . 283 . DP=267;DP4=252,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0106 PL 0 MT 290 . A . 283 . DP=261;DP4=250,0,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0133 PL 0 MT 291 . A . 283 . DP=259;DP4=247,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 292 . T . 283 . DP=255;DP4=255,0,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 293 . T . 283 . DP=259;DP4=246,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 294 . T . 283 . DP=257;DP4=245,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 295 . C . 283 . DP=254;DP4=246,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 296 . C . 283 . DP=253;DP4=234,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 297 . A . 283 . DP=253;DP4=244,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0099 PL 0 MT 298 . C . 283 . DP=253;DP4=236,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0168 PL 0 MT 299 . C . 283 . DP=251;DP4=229,0,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0068,1.0,1.0 PL 0 MT 300 . A . 283 . DP=249;DP4=237,0,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 301 . A . 283 . DP=248;DP4=223,0,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-05,0.058,0.12;VDB=0.0369 PL 0 MT 302 . A . 283 . DP=248;DP4=221,0,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.3e-05,0.057,0.14;VDB=0.0227 PL 0 MT 302 . ACCCCCCC . 84.6 . DP=248;DP4=26,0,2,0;MQ=47;FQ=-88.5;AF1=0.0;AC1=0.0;PV4=1.0,1.0,1.0,0.21;INDEL;VDB=0.0435 PL 0 MT 303 . C . 283 . DP=244;DP4=205,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 304 . C . 283 . DP=242;DP4=197,0,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0027,0.0048,1.0;VDB=0.01 PL 0 MT 304 . C . 85.5 . DP=242;DP4=59,0,1,0;MQ=53;FQ=-197.0;AF1=0.0;AC1=0.0;PV4=1.0,0.22,1.0,1.0;INDEL;VDB=0.0435 PL 0 MT 305 . C . 283 . DP=250;DP4=193,0,2,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00014,1.0,0.3;VDB=0.0158 PL 0 MT 306 . C . 283 . DP=252;DP4=194,0,2,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00023,1.0,0.11;VDB=0.0111 PL 0 MT 307 . C . 283 . DP=252;DP4=190,0,3,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2e-06,0.0019,0.34;VDB=0.0284 PL 0 MT 308 . C . 283 . DP=255;DP4=175,0,2,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.9e-06,1.0,0.11;VDB=0.009 PL 0 MT 309 . C . 283 . DP=257;DP4=176,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0001 PL 0 MT 310 . T . 283 . DP=260;DP4=204,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0268 PL 0 MT 311 . C . 105 . DP=265;DP4=25,0,0,0;MQ=53;FQ=-102.0;AF1=0.0;AC1=0.0;VDB=0.0195 PL 0 MT 312 . C . 102 . DP=271;DP4=23,1,0,0;MQ=58;FQ=-99.0;AF1=0.0;AC1=0.0 PL 0 MT 313 . C . 132 . DP=282;DP4=33,1,0,0;MQ=59;FQ=-129.0;AF1=0.0;AC1=0.0 PL 0 MT 314 . C . 138 . DP=280;DP4=35,1,0,0;MQ=58;FQ=-135.0;AF1=0.0;AC1=0.0 PL 0 MT 315 . C . 147 . DP=281;DP4=38,1,0,0;MQ=58;FQ=-144.0;AF1=0.0;AC1=0.0 PL 0 MT 316 . G . 255 . DP=270;DP4=199,1,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0058,0.075,1.0;VDB=0.0233 PL 0 MT 317 . C . 283 . DP=278;DP4=221,2,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0227 PL 0 MT 318 . T . 283 . DP=286;DP4=267,2,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0367 PL 0 MT 319 . T . 283 . DP=287;DP4=236,2,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,5.5e-08,0.011,0.33;VDB=0.0449 PL 0 MT 320 . C . 283 . DP=288;DP4=263,3,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0233 PL 0 MT 321 . T . 283 . DP=289;DP4=270,3,1,1;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.029,0.00028,0.12,0.0089;VDB=0.0302 PL 0 MT 322 . G . 283 . DP=290;DP4=258,4,4,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.5e-05,1.4e-06,1.0;VDB=0.0093 PL 0 MT 323 . G . 283 . DP=291;DP4=212,5,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0081 PL 0 MT 324 . C . 283 . DP=292;DP4=231,5,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0031,1.0,0.26;VDB=0.0099 PL 0 MT 325 . C . 283 . DP=295;DP4=236,10,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.7e-06,2.3e-05,0.47;VDB=0.0128 PL 0 MT 326 . A . 283 . DP=298;DP4=257,14,3,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0039,1.0,1.0;VDB=0.0449 PL 0 MT 327 . C . 283 . DP=307;DP4=238,18,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00016,0.077,0.41;VDB=0.0302 PL 0 MT 328 . A . 283 . DP=311;DP4=258,19,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.023,1.0,1.0;VDB=0.0115 PL 0 MT 329 . G . 283 . DP=316;DP4=279,16,3,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00045,0.017,1.0;VDB=0.0335 PL 0 MT 330 . C . 283 . DP=322;DP4=237,22,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0115 PL 0 MT 331 . A . 283 . DP=332;DP4=268,25,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0302 PL 0 MT 332 . C . 283 . DP=337;DP4=257,28,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00057,0.00021,0.22;VDB=0.0104 PL 0 MT 333 . T . 283 . DP=339;DP4=305,24,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0005 PL 0 MT 334 . T . 283 . DP=349;DP4=275,31,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0106 PL 0 MT 335 . A . 283 . DP=356;DP4=283,32,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.037,0.014,1.0;VDB=0.0057 PL 0 MT 336 . A . 283 . DP=361;DP4=279,34,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 337 . A . 283 . DP=359;DP4=278,40,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.16,1.0,0.093;VDB=0.0022 PL 0 MT 338 . C . 283 . DP=359;DP4=267,41,3,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.1e-06,1.0,1.0;VDB=0.0302 PL 0 MT 339 . A . 283 . DP=365;DP4=295,45,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0242 PL 0 MT 340 . C . 283 . DP=372;DP4=284,51,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00047,0.025,1.0;VDB=0.0169 PL 0 MT 341 . A . 283 . DP=378;DP4=299,54,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0325 PL 0 MT 342 . T . 283 . DP=385;DP4=321,47,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0324 PL 0 MT 343 . C . 283 . DP=387;DP4=298,62,2,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,9.5e-06,1.0,0.48;VDB=0.0169 PL 0 MT 344 . T . 283 . DP=392;DP4=319,49,1,1;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.25,6.8e-05,0.16,1.0;VDB=0.0394 PL 0 MT 345 . C . 283 . DP=403;DP4=314,70,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 346 . T . 283 . DP=412;DP4=335,70,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0124 PL 0 MT 347 . G . 283 . DP=418;DP4=290,71,5,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.59,6.4e-09,0.002,1.0;VDB=0.0335 PL 0 MT 348 . C . 283 . DP=429;DP4=300,80,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0017,1.0,0.19 PL 0 MT 349 . C . 283 . DP=441;DP4=312,87,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.7e-05,0.043,1.0;VDB=0.0396 PL 0 MT 350 . A . 283 . DP=451;DP4=333,83,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0115 PL 0 MT 351 . A . 283 . DP=456;DP4=322,89,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0445 PL 0 MT 352 . A . 283 . DP=458;DP4=321,98,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0245 PL 0 MT 353 . C . 283 . DP=467;DP4=317,100,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0449 PL 0 MT 354 . C . 283 . DP=481;DP4=328,104,1,1;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.43,0.00091,0.012,1.0;VDB=0.0447 PL 0 MT 355 . C . 283 . DP=483;DP4=339,104,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 356 . C . 283 . DP=494;DP4=340,122,1,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.023,1.0,0.026;VDB=0.0166 PL 0 MT 357 . A . 283 . DP=500;DP4=353,115,2,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.4e-06,1.0,1.0;VDB=0.0073 PL 0 MT 358 . A . 283 . DP=503;DP4=357,115,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0063 PL 0 MT 359 . A . 283 . DP=507;DP4=348,119,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0146 PL 0 MT 360 . A . 283 . DP=515;DP4=355,125,1,1;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.45,2.4e-06,0.29,0.0068;VDB=0.009 PL 0 MT 361 . A . 283 . DP=516;DP4=359,134,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.003 PL 0 MT 362 . C . 283 . DP=522;DP4=361,138,1,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,5.4e-06,0.078,1.0 PL 0 MT 363 . A . 283 . DP=528;DP4=380,128,1,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.2e-05,0.072,0.067;VDB=0.0185 PL 0 MT 364 . A . 283 . DP=540;DP4=370,143,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 365 . A . 283 . DP=552;DP4=379,152,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0112 PL 0 MT 366 . G . 283 . DP=553;DP4=385,146,1,2;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.19,5.9e-09,0.12,1.0;VDB=0.0429 PL 0 MT 367 . A . 283 . DP=560;DP4=386,146,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 368 . A . 283 . DP=566;DP4=388,156,2,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0066,0.32,0.38;VDB=0.0367 PL 0 MT 369 . C . 283 . DP=573;DP4=376,150,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0009 PL 0 MT 370 . C . 283 . DP=578;DP4=390,153,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 371 . C . 283 . DP=587;DP4=395,176,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.068,0.091,1.0;VDB=0.0369 PL 0 MT 372 . T . 283 . DP=597;DP4=415,162,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0063 PL 0 MT 373 . A . 283 . DP=607;DP4=413,169,2,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00013,1.0,1.0;VDB=0.0168 PL 0 MT 374 . A . 283 . DP=612;DP4=414,185,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0165 PL 0 MT 375 . C . 283 . DP=620;DP4=406,186,7,4;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.75,1.0,0.49,1.0;VDB=0.0394 PL 0 MT 376 . A . 283 . DP=631;DP4=423,191,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0302 PL 0 MT 377 . C . 283 . DP=641;DP4=421,192,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.5e-06,1.0,0.4;VDB=0.0342 PL 0 MT 378 . C . 283 . DP=656;DP4=432,204,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.12,0.093,1.0;VDB=0.0144 PL 0 MT 379 . A . 283 . DP=671;DP4=452,207,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0335 PL 0 MT 380 . G . 283 . DP=676;DP4=458,206,0,2;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.097,7.4e-09,0.0067,0.052;VDB=0.0193 PL 0 MT 381 . C . 283 . DP=686;DP4=456,209,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 382 . C . 283 . DP=691;DP4=462,216,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.9e-06,0.091,1.0 PL 0 MT 383 . T . 283 . DP=697;DP4=474,215,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-08,1.0,0.33;VDB=0.0111 PL 0 MT 384 . A . 283 . DP=699;DP4=467,221,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,7.9e-07,1.0,0.032 PL 0 MT 385 . A . 283 . DP=702;DP4=465,221,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.071,1.0,0.23;VDB=0.027 PL 0 MT 386 . C . 283 . DP=707;DP4=464,223,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.022,1.0,0.064;VDB=0.0245 PL 0 MT 387 . C . 283 . DP=713;DP4=468,230,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2e-09,1.0,1.0 PL 0 MT 388 . A . 283 . DP=719;DP4=477,234,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 389 . G . 283 . DP=725;DP4=488,235,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 390 . A . 283 . DP=727;DP4=471,239,2,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,8.2e-09,0.34,1.0;VDB=0.0165 PL 0 MT 391 . T . 283 . DP=736;DP4=490,238,2,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.7e-07,0.34,1.0;VDB=0.0193 PL 0 MT 392 . T . 283 . DP=744;DP4=488,241,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.4e-09,1.0,1.0 PL 0 MT 393 . T . 283 . DP=746;DP4=486,241,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 394 . C . 283 . DP=750;DP4=496,250,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0202 PL 0 MT 395 . A . 283 . DP=746;DP4=492,247,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 396 . A . 283 . DP=752;DP4=480,252,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 397 . A . 283 . DP=755;DP4=479,258,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.8e-06,0.096,1.0;VDB=0.0215 PL 0 MT 398 . T . 283 . DP=759;DP4=495,253,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 399 . T . 283 . DP=763;DP4=488,256,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.9e-07,0.017,0.11 PL 0 MT 400 . T . 283 . DP=764;DP4=485,262,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0138 PL 0 MT 401 . T . 283 . DP=772;DP4=483,271,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 402 . A . 283 . DP=767;DP4=477,275,0,1;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,2.2e-06,0.093,1.0;VDB=0.019 PL 0 MT 403 . T . 283 . DP=767;DP4=484,268,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 404 . C . 283 . DP=771;DP4=478,284,0,1;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,4e-06,0.092,1.0 PL 0 MT 405 . T . 283 . DP=766;DP4=479,272,1,1;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.2e-21,1.0,0.19;VDB=0.0227 PL 0 MT 406 . T . 283 . DP=770;DP4=470,281,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 407 . T . 283 . DP=764;DP4=459,283,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 408 . T . 283 . DP=762;DP4=454,297,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 409 . G . 283 . DP=768;DP4=466,292,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 410 . G . 283 . DP=766;DP4=447,286,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0261 PL 0 MT 411 . C . 283 . DP=767;DP4=449,292,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 412 . G . 283 . DP=771;DP4=459,287,0,1;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.39,0.0013,1.0,0.029;VDB=0.0185 PL 0 MT 413 . G . 283 . DP=776;DP4=451,285,0,2;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,0.0059,0.025,1.0;VDB=0.0394 PL 0 MT 414 . T . 283 . DP=781;DP4=470,297,0,1;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.39,2.6e-05,1.0,0.061;VDB=0.0429 PL 0 MT 415 . A . 283 . DP=787;DP4=462,310,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 416 . T . 283 . DP=788;DP4=473,306,1,1;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,5.1e-12,0.31,1.0;VDB=0.0205 PL 0 MT 417 . G . 283 . DP=782;DP4=471,290,0,1;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.38,3.1e-08,0.079,1.0;VDB=0.0366 PL 0 MT 418 . C . 283 . DP=785;DP4=457,310,1,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.5e-08,1.0,0.013;VDB=0.0227 PL 0 MT 419 . A . 283 . DP=785;DP4=462,309,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0447 PL 0 MT 420 . C . 283 . DP=787;DP4=450,313,3,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.27,1.3e-11,0.11,1.0;VDB=0.0268 PL 0 MT 421 . T . 283 . DP=785;DP4=470,296,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 422 . T . 283 . DP=786;DP4=457,302,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 423 . T . 283 . DP=782;DP4=453,298,1,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-08,0.073,1.0;VDB=0.0253 PL 0 MT 424 . T . 283 . DP=780;DP4=453,299,0,2;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.16,1.3e-11,1.0,0.043;VDB=0.021 PL 0 MT 425 . A . 283 . DP=781;DP4=449,296,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 426 . A . 283 . DP=782;DP4=455,310,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0067 PL 0 MT 427 . C . 283 . DP=778;DP4=447,311,3,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.27,2.2e-13,0.0044,1.0;VDB=0.0342 PL 0 MT 428 . A . 283 . DP=785;DP4=460,311,2,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.52,0.0039,0.014,1.0;VDB=0.0013 PL 0 MT 429 . G . 283 . DP=782;DP4=468,290,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 430 . T . 283 . DP=783;DP4=468,279,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0417 PL 0 MT 431 . C . 283 . DP=783;DP4=456,308,3,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.28,2.7e-07,0.25,0.48;VDB=0.0417 PL 0 MT 432 . A . 283 . DP=778;DP4=458,293,0,1;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.39,0.0053,1.0,0.074;VDB=0.0417 PL 0 MT 433 . C . 283 . DP=778;DP4=438,276,2,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.53,6.9e-09,0.011,1.0;VDB=0.0088 PL 0 MT 434 . C . 283 . DP=779;DP4=442,285,3,1;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.7e-16,1.0,0.0067;VDB=0.0367 PL 0 MT 435 . C . 283 . DP=775;DP4=447,282,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 436 . C . 283 . DP=773;DP4=436,286,3,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.28,1.7e-10,0.06,0.39;VDB=0.0233 PL 0 MT 437 . C . 283 . DP=773;DP4=444,285,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 438 . C . 283 . DP=772;DP4=449,298,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 439 . A . 283 . DP=773;DP4=448,284,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00018,1.0,1.0;VDB=0.0253 PL 0 MT 440 . A . 283 . DP=772;DP4=449,300,0,2;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.16,0.0016,1.0,0.27;VDB=0.0324 PL 0 MT 441 . C . 283 . DP=770;DP4=444,299,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 442 . T . 283 . DP=773;DP4=473,275,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0373 PL 0 MT 443 . A . 283 . DP=772;DP4=458,273,2,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.53,3.5e-09,0.18,0.012;VDB=0.0169 PL 0 MT 444 . A . 283 . DP=758;DP4=451,284,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0417 PL 0 MT 445 . C . 283 . DP=765;DP4=454,287,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00013,1.0,1.0;VDB=0.0124 PL 0 MT 446 . A . 283 . DP=763;DP4=465,283,0,1;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.38,1.0,1.0,1.0;VDB=0.0233 PL 0 MT 447 . C . 283 . DP=761;DP4=444,291,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.014,0.023,1.0;VDB=0.0121 PL 0 MT 448 . A . 283 . DP=768;DP4=459,293,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0033,0.025,1.0;VDB=0.0445 PL 0 MT 449 . T . 283 . DP=765;DP4=467,251,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0183 PL 0 MT 450 . T . 283 . DP=758;DP4=446,248,1,1;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00099,0.031,0.3;VDB=0.0242 PL 0 MT 451 . A . 283 . DP=766;DP4=458,292,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0166 PL 0 MT 452 . T . 283 . DP=761;DP4=467,250,0,1;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.35,6.8e-05,0.02,0.13 PL 0 MT 453 . T . 283 . DP=768;DP4=447,255,0,1;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.36,7e-06,1.0,0.074;VDB=0.0195 PL 0 MT 454 . T . 283 . DP=757;DP4=440,257,0,1;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,2.3e-05,1.0,1.0;VDB=0.0227 PL 0 MT 455 . T . 283 . DP=759;DP4=436,201,0,3;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.032,3.9e-07,0.22,0.48;VDB=0.0057 PL 0 MT 456 . C . 283 . DP=765;DP4=435,252,4,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.3,1.5e-10,0.0092,0.05;VDB=0.0018 PL 0 MT 457 . C . 283 . DP=765;DP4=437,252,2,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.54,8.3e-10,1.0,0.0021;VDB=0.0089 PL 0 MT 458 . C . 283 . DP=765;DP4=437,251,2,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.54,6.9e-06,1.0,1.0;VDB=0.0435 PL 0 MT 459 . C . 283 . DP=761;DP4=444,290,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00014,0.00041,0.49;VDB=0.0062 PL 0 MT 460 . T . 283 . DP=759;DP4=465,242,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0002 PL 0 MT 461 . C . 283 . DP=761;DP4=452,250,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0069 PL 0 MT 462 . C . 283 . DP=763;DP4=441,252,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 463 . C . 283 . DP=762;DP4=437,283,3,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.28,6.3e-06,0.16,0.39;VDB=0.0363 PL 0 MT 464 . A . 283 . DP=763;DP4=444,262,0,1;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,0.08,1.0,1.0;VDB=0.0367 PL 0 MT 465 . C . 283 . DP=762;DP4=453,290,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0215 PL 0 MT 466 . T . 283 . DP=758;DP4=465,244,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0115 PL 0 MT 467 . C . 283 . DP=757;DP4=460,246,0,1;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.35,2.1e-06,1.0,1.0;VDB=0.0343 PL 0 MT 468 . C . 283 . DP=754;DP4=440,251,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0175 PL 0 MT 469 . C . 283 . DP=755;DP4=445,293,1,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00029,0.0029,0.27;VDB=0.0096 PL 0 MT 470 . A . 283 . DP=762;DP4=446,296,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.02 PL 0 MT 471 . T . 283 . DP=759;DP4=463,256,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.36,0.001,0.0016,1.0;VDB=0.0232 PL 0 MT 472 . A . 283 . DP=757;DP4=448,287,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0027,0.002,0.16;VDB=0.0447 PL 0 MT 473 . C . 283 . DP=757;DP4=451,293,1,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.3e-07,0.033,1.0;VDB=0.0193 PL 0 MT 474 . T . 283 . DP=763;DP4=468,251,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0134 PL 0 MT 475 . A . 283 . DP=768;DP4=460,285,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.38,0.0041,0.0013,1.0;VDB=0.0268 PL 0 MT 476 . C . 283 . DP=768;DP4=462,292,0,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,1.3e-06,1.1e-05,1.0;VDB=0.02 PL 0 MT 477 . T . 283 . DP=772;DP4=474,257,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.35,0.00014,1.0,0.11;VDB=0.0242 PL 0 MT 478 . A . 283 . DP=772;DP4=462,253,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.54,8.5e-10,0.015,0.19;VDB=0.0054 PL 0 MT 479 . A . 283 . DP=773;DP4=458,298,1,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0012,1.0,0.038;VDB=0.0281 PL 0 MT 480 . T . 283 . DP=783;DP4=471,231,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0025 PL 0 MT 481 . C . 283 . DP=784;DP4=458,309,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.048,1.0,0.13;VDB=0.0217 PL 0 MT 482 . T . 283 . DP=783;DP4=460,259,2,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.62,0.0001,1.0,1.0;VDB=0.0335 PL 0 MT 483 . C . 283 . DP=791;DP4=460,322,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0077 PL 0 MT 484 . A . 283 . DP=792;DP4=457,324,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0225 PL 0 MT 485 . T . 283 . DP=799;DP4=467,258,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.36,0.064,1.0,1.0;VDB=0.0169 PL 0 MT 486 . C . 283 . DP=799;DP4=456,333,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 487 . A . 283 . DP=803;DP4=458,267,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 488 . A . 283 . DP=798;DP4=447,334,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.064,0.00075,1.0;VDB=0.0207 PL 0 MT 489 . T . 283 . DP=803;DP4=468,264,0,3;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.048,4.9e-06,0.042,0.021;VDB=0.0044 PL 0 MT 490 . A . 283 . DP=797;DP4=451,317,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.007,0.00036,0.4;VDB=0.0044 PL 0 MT 491 . C . 283 . DP=791;DP4=448,324,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 492 . A . 283 . DP=797;DP4=456,298,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.4,0.00027,0.0004,1.0;VDB=0.0156 PL 0 MT 493 . A . 283 . DP=798;DP4=457,282,0,3;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.056,0.00012,0.064,0.3;VDB=0.0115 PL 0 MT 494 . C . 283 . DP=804;DP4=444,277,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0156 PL 0 MT 495 . C . 283 . DP=814;DP4=460,288,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2e-05,1.0,0.27;VDB=0.0174 PL 0 MT 496 . C . 283 . DP=821;DP4=448,292,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.52,2e-06,1.0,0.11;VDB=0.0372 PL 0 MT 497 . C . 283 . DP=825;DP4=457,296,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.52,0.048,1.0,1.0;VDB=0.0207 PL 0 MT 498 . C . 283 . DP=828;DP4=460,304,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0253 PL 0 MT 499 . G . 283 . DP=831;DP4=469,285,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0037,1.0,0.015;VDB=0.0394 PL 0 MT 500 . C . 283 . DP=843;DP4=477,292,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.019 PL 0 MT 501 . C . 283 . DP=846;DP4=477,302,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 502 . C . 283 . DP=843;DP4=475,338,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0198 PL 0 MT 503 . A . 283 . DP=843;DP4=486,336,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0076 PL 0 MT 504 . T . 283 . DP=844;DP4=501,279,1,3;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.14,4.7e-06,3.5e-06,1.0;VDB=0.0115 PL 0 MT 505 . C . 283 . DP=836;DP4=481,308,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0119 PL 0 MT 506 . C . 283 . DP=835;DP4=479,332,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.5e-05,1.0,0.021;VDB=0.0089 PL 0 MT 507 . T . 283 . DP=841;DP4=498,307,1,3;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.16,1.7e-08,0.16,0.086;VDB=0.0324 PL 0 MT 508 . A . 283 . DP=847;DP4=483,322,2,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.7e-05,0.082,1.0;VDB=0.044 PL 0 MT 509 . C . 283 . DP=854;DP4=471,319,4,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,1.2e-09,0.0011,0.28;VDB=0.0394 PL 0 MT 510 . C . 283 . DP=853;DP4=463,322,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.4e-06,1.0,0.045;VDB=0.018 PL 0 MT 511 . C . 283 . DP=855;DP4=470,358,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.7e-05,0.0014,0.053;VDB=0.0146 PL 0 MT 512 . A . 283 . DP=857;DP4=488,355,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.42,0.00018,0.0016,1.0;VDB=0.0166 PL 0 MT 513 . G . 283 . DP=857;DP4=496,312,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.29,2.2e-11,0.00027,1.0;VDB=0.0417 PL 0 MT 514 . C . 283 . DP=851;DP4=471,346,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.18,0.011,1.0 PL 0 MT 515 . A . 283 . DP=843;DP4=479,344,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0019,1.0,0.017;VDB=0.0445 PL 0 MT 516 . C . 283 . DP=839;DP4=472,342,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 517 . A . 283 . DP=850;DP4=475,350,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0367 PL 0 MT 518 . C . 283 . DP=841;DP4=457,349,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.43,0.00018,1.0,0.063;VDB=0.0155 PL 0 MT 519 . A . 283 . DP=839;DP4=470,343,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0394 PL 0 MT 520 . C . 283 . DP=833;DP4=457,341,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,1e-06,0.02,0.46;VDB=0.0145 PL 0 MT 521 . A . 283 . DP=831;DP4=463,335,1,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0021,1.0,0.0088;VDB=0.0394 PL 0 MT 522 . C . 283 . DP=835;DP4=462,345,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0118 PL 0 MT 523 . A . 283 . DP=833;DP4=463,329,0,4;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.03,5.1e-08,0.11,0.026;VDB=0.0335 PL 0 MT 524 . C . 283 . DP=828;DP4=454,324,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 525 . C . 283 . DP=828;DP4=448,333,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0101 PL 0 MT 526 . G . 283 . DP=829;DP4=449,327,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0206 PL 0 MT 527 . C . 283 . DP=832;DP4=458,353,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,4.6e-09,0.089,0.31;VDB=0.0074 PL 0 MT 528 . T . 283 . DP=828;DP4=470,345,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.42,0.017,1.0,1.0;VDB=0.0417 PL 0 MT 529 . G . 283 . DP=819;DP4=465,322,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.41,9.5e-07,0.00067,1.0;VDB=0.0074 PL 0 MT 530 . C . 283 . DP=822;DP4=451,348,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0074 PL 0 MT 531 . T . 283 . DP=828;DP4=471,331,1,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.57,2e-10,0.065,1.0;VDB=0.0093 PL 0 MT 532 . A . 283 . DP=830;DP4=433,335,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,5e-06,1.0,0.15;VDB=0.02 PL 0 MT 533 . A . 283 . DP=825;DP4=431,343,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,5.8e-06,0.017,1.0;VDB=0.0374 PL 0 MT 534 . C . 283 . DP=828;DP4=452,322,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 535 . C . 283 . DP=827;DP4=441,333,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00017,1.1e-06,1.0;VDB=0.0253 PL 0 MT 536 . C . 283 . DP=830;DP4=446,328,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.004 PL 0 MT 537 . C . 283 . DP=830;DP4=436,361,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0212 PL 0 MT 538 . A . 283 . DP=830;DP4=461,358,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0245 PL 0 MT 539 . T . 283 . DP=832;DP4=474,330,1,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.57,8.2e-07,1.5e-05,1.0;VDB=0.0445 PL 0 MT 540 . A . 283 . DP=834;DP4=456,327,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.27,2.4e-05,1.0,0.078;VDB=0.0445 PL 0 MT 541 . C . 283 . DP=828;DP4=442,326,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,0.00044,0.01,0.18;VDB=0.0435 PL 0 MT 542 . C . 283 . DP=832;DP4=437,327,4,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.4,1.7e-12,8e-07,1.0;VDB=0.0447 PL 0 MT 543 . C . 283 . DP=829;DP4=448,323,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.27,5.3e-09,1.0,0.3;VDB=0.0429 PL 0 MT 544 . C . 283 . DP=833;DP4=459,326,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.27,4e-07,1.0;VDB=0.0153 PL 0 MT 545 . G . 283 . DP=831;DP4=453,338,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0373 PL 0 MT 546 . A . 283 . DP=831;DP4=460,323,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0354 PL 0 MT 547 . A . 283 . DP=826;DP4=461,331,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.42,2.8e-05,0.00042,0.027;VDB=0.0268 PL 0 MT 548 . C . 283 . DP=827;DP4=460,317,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 549 . C . 283 . DP=839;DP4=461,350,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.26,2e-08,1.0,0.01;VDB=0.0051 PL 0 MT 550 . A . 283 . DP=840;DP4=469,331,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0417 PL 0 MT 551 . A . 283 . DP=837;DP4=468,342,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.017,1.0,1.0;VDB=0.0367 PL 0 MT 552 . C . 283 . DP=834;DP4=457,322,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,3.6e-05,1.0,0.34;VDB=0.0183 PL 0 MT 553 . C . 283 . DP=838;DP4=459,345,4,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.14,2.1e-13,0.00082,1.0;VDB=0.0367 PL 0 MT 554 . A . 283 . DP=842;DP4=482,321,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00051,0.17,0.24;VDB=0.0123 PL 0 MT 555 . A . 283 . DP=842;DP4=478,326,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.41,3.8e-08,0.00018,1.0;VDB=0.0165 PL 0 MT 556 . A . 283 . DP=843;DP4=473,331,0,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.17,5.5e-08,1.0,0.31;VDB=0.0429 PL 0 MT 557 . C . 283 . DP=843;DP4=463,321,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.7e-05,1.0,1.0;VDB=0.0435 PL 0 MT 558 . C . 283 . DP=839;DP4=462,321,2,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.4e-12,5.7e-15,1.0;VDB=0.0447 PL 0 MT 559 . C . 283 . DP=827;DP4=454,315,4,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,6.5e-16,0.007,0.31;VDB=0.0073 PL 0 MT 560 . C . 283 . DP=816;DP4=450,334,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.9e-05,9.4e-08,1.0 PL 0 MT 561 . A . 283 . DP=821;DP4=470,317,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.4,0.049,1.0,1.0;VDB=0.0074 PL 0 MT 562 . A . 283 . DP=827;DP4=457,322,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0002 PL 0 MT 563 . A . 283 . DP=834;DP4=457,340,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 564 . G . 283 . DP=828;DP4=478,331,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.011,1.0,1.0;VDB=0.0025 PL 0 MT 565 . A . 283 . DP=824;DP4=452,331,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,0.00016,0.0075,0.14;VDB=0.0429 PL 0 MT 566 . C . 283 . DP=827;DP4=451,332,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00033,2.7e-05,1.0;VDB=0.0123 PL 0 MT 567 . A . 283 . DP=827;DP4=472,315,0,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.4,0.29,1.0,1.0;VDB=0.0367 PL 0 MT 568 . C . 283 . DP=827;DP4=449,310,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0116 PL 0 MT 569 . C . 283 . DP=826;DP4=444,307,6,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.086,3.2e-15,2.2e-08,1.0;VDB=0.0141 PL 0 MT 570 . C . 283 . DP=819;DP4=436,301,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.52,0.0003,1.0,1.0;VDB=0.0241 PL 0 MT 571 . C . 283 . DP=822;DP4=459,302,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0025 PL 0 MT 572 . C . 283 . DP=822;DP4=459,305,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 573 . C . 283 . DP=823;DP4=466,317,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0133 PL 0 MT 574 . A . 283 . DP=826;DP4=488,315,1,2;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.56,4.9e-06,0.019,1.0;VDB=0.044 PL 0 MT 575 . C . 283 . DP=827;DP4=479,314,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0128 PL 0 MT 576 . A . 283 . DP=831;DP4=495,313,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0028,1.6e-05,0.36;VDB=0.0169 PL 0 MT 577 . G . 283 . DP=830;DP4=516,300,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0195 PL 0 MT 578 . T . 283 . DP=837;DP4=519,299,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0302 PL 0 MT 579 . T . 283 . DP=833;DP4=495,295,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 580 . T . 283 . DP=839;DP4=497,302,1,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.3e-06,0.00033,0.061;VDB=0.0042 PL 0 MT 581 . A . 283 . DP=848;DP4=509,313,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8e-05,1.0,0.29;VDB=0.0088 PL 0 MT 582 . T . 283 . DP=848;DP4=531,308,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8e-07,1.0,0.33;VDB=0.0184 PL 0 MT 583 . G . 283 . DP=842;DP4=524,304,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.5e-07,2.9e-06,0.24 PL 0 MT 584 . T . 283 . DP=848;DP4=530,310,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 585 . A . 283 . DP=844;DP4=499,317,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.021 PL 0 MT 586 . G . 283 . DP=835;DP4=516,304,0,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,4.9e-06,1.0,0.035;VDB=0.044 PL 0 MT 587 . C . 283 . DP=847;DP4=503,324,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 588 . T . 283 . DP=847;DP4=521,309,0,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,2.3e-05,2.5e-12,1.0;VDB=0.0051 PL 0 MT 589 . T . 283 . DP=846;DP4=502,310,0,2;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,2.1e-14,0.0001,0.29;VDB=0.0227 PL 0 MT 590 . A . 283 . DP=843;DP4=504,320,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.02 PL 0 MT 591 . C . 283 . DP=847;DP4=497,316,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.52,1.3e-11,0.00017,0.43;VDB=0.0263 PL 0 MT 592 . C . 283 . DP=853;DP4=492,335,3,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.65,1.8e-12,1.2e-33,1.0;VDB=0.0169 PL 0 MT 593 . T . 283 . DP=853;DP4=511,317,3,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.29,6e-10,0.005,0.47;VDB=0.0073 PL 0 MT 594 . C . 283 . DP=853;DP4=507,323,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0017,1.0,1.0;VDB=0.0121 PL 0 MT 595 . C . 283 . DP=855;DP4=495,333,1,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.9e-14,0.00031,0.29;VDB=0.0215 PL 0 MT 596 . T . 283 . DP=859;DP4=513,329,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0032 PL 0 MT 597 . C . 283 . DP=861;DP4=509,338,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0195 PL 0 MT 598 . A . 283 . DP=853;DP4=513,318,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 599 . A . 283 . DP=845;DP4=507,310,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.7e-06,1.0,0.021;VDB=0.0 PL 0 MT 600 . A . 283 . DP=847;DP4=509,316,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.023,1.0,0.036;VDB=0.0101 PL 0 MT 601 . G . 283 . DP=846;DP4=525,302,0,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,1.6e-07,1.1e-06,1.0;VDB=0.0242 PL 0 MT 602 . C . 283 . DP=847;DP4=508,317,3,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.29,7.8e-13,0.0041,0.07;VDB=0.0013 PL 0 MT 603 . A . 283 . DP=861;DP4=534,303,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.54,7.4e-14,0.00014,0.5;VDB=0.0215 PL 0 MT 604 . A . 283 . DP=866;DP4=528,319,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,7.1e-07,1.0,0.036;VDB=0.0205 PL 0 MT 605 . T . 283 . DP=873;DP4=547,316,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0099 PL 0 MT 606 . A . 283 . DP=884;DP4=540,326,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.18,1.0,1.0;VDB=0.0356 PL 0 MT 607 . C . 283 . DP=880;DP4=540,323,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0086 PL 0 MT 608 . A . 283 . DP=883;DP4=542,324,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.8e-06,1.0,1.0;VDB=0.0374 PL 0 MT 609 . C . 283 . DP=890;DP4=548,326,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0163 PL 0 MT 610 . T . 283 . DP=900;DP4=572,322,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0242 PL 0 MT 611 . G . 283 . DP=905;DP4=577,314,0,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.35,0.04,1.0,1.0;VDB=0.0394 PL 0 MT 612 . A . 283 . DP=904;DP4=568,314,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0049,1.0,0.18 PL 0 MT 613 . A . 283 . DP=913;DP4=571,316,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00039,1.0,0.49;VDB=0.0064 PL 0 MT 614 . A . 283 . DP=918;DP4=571,314,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0029,1.0,1.0;VDB=0.018 PL 0 MT 615 . A . 283 . DP=924;DP4=570,328,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0144 PL 0 MT 616 . T . 283 . DP=926;DP4=593,318,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0324 PL 0 MT 617 . G . 283 . DP=926;DP4=592,325,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 618 . T . 283 . DP=932;DP4=591,320,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.044 PL 0 MT 619 . T . 283 . DP=936;DP4=586,317,0,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.12,9.1e-09,0.06,1.0;VDB=0.0207 PL 0 MT 620 . T . 283 . DP=933;DP4=581,315,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.4e-06,1.0,0.057;VDB=0.0245 PL 0 MT 621 . A . 283 . DP=930;DP4=585,327,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 622 . G . 283 . DP=925;DP4=600,317,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 623 . A . 283 . DP=925;DP4=584,317,1,1;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.9e-13,0.017,0.03;VDB=0.0414 PL 0 MT 624 . C . 283 . DP=928;DP4=584,303,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0116 PL 0 MT 625 . G . 283 . DP=930;DP4=593,301,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,0.0069,1.0,0.24;VDB=0.0143 PL 0 MT 626 . G . 283 . DP=920;DP4=583,289,1,2;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.26,3e-08,0.011,0.15;VDB=0.0435 PL 0 MT 627 . G . 283 . DP=922;DP4=583,290,0,1;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.33,1.1e-06,1.0,1.0;VDB=0.0429 PL 0 MT 628 . C . 283 . DP=921;DP4=584,303,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0111 PL 0 MT 629 . T . 283 . DP=926;DP4=613,293,2,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.5e-08,1.0,0.1;VDB=0.009 PL 0 MT 630 . C . 283 . DP=927;DP4=604,308,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0363 PL 0 MT 631 . A . 283 . DP=925;DP4=609,306,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0343 PL 0 MT 632 . C . 283 . DP=923;DP4=595,309,3,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,5.8e-20,0.15,1.0;VDB=0.0335 PL 0 MT 633 . A . 283 . DP=926;DP4=606,312,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 634 . T . 283 . DP=926;DP4=614,282,0,1;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.32,0.0078,1.0,1.0;VDB=0.0125 PL 0 MT 635 . C . 283 . DP=925;DP4=597,304,6,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.19,2.3e-19,0.00018,0.23;VDB=0.0447 PL 0 MT 636 . A . 283 . DP=926;DP4=607,302,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0009,0.048,1.0;VDB=0.0435 PL 0 MT 637 . C . 283 . DP=933;DP4=589,289,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0029,1.0,1.0;VDB=0.0207 PL 0 MT 638 . C . 283 . DP=935;DP4=597,290,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 639 . C . 283 . DP=928;DP4=594,289,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 640 . C . 283 . DP=932;DP4=591,309,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0077 PL 0 MT 641 . A . 283 . DP=935;DP4=603,314,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 642 . T . 283 . DP=935;DP4=620,289,0,3;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.033,4.4e-10,0.44,1.0;VDB=0.0268 PL 0 MT 643 . A . 283 . DP=931;DP4=599,299,2,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.1e-09,0.29,0.0039;VDB=0.0173 PL 0 MT 644 . A . 283 . DP=927;DP4=593,298,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0192 PL 0 MT 645 . A . 283 . DP=928;DP4=593,318,1,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.5e-05,0.094,1.0;VDB=0.0335 PL 0 MT 646 . C . 283 . DP=927;DP4=591,319,1,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.1e-06,1.0,0.054;VDB=0.0237 PL 0 MT 647 . A . 283 . DP=932;DP4=602,303,0,1;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.34,1.5e-08,0.02,0.02 PL 0 MT 648 . A . 283 . DP=931;DP4=591,304,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 649 . A . 283 . DP=937;DP4=596,317,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 650 . T . 283 . DP=948;DP4=625,303,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0299 PL 0 MT 651 . A . 283 . DP=940;DP4=604,317,3,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.56,4.4e-09,1.0,1.0;VDB=0.0215 PL 0 MT 652 . G . 283 . DP=931;DP4=610,301,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 653 . G . 283 . DP=929;DP4=592,300,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0145 PL 0 MT 654 . T . 283 . DP=935;DP4=609,309,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.039,0.079,0.099;VDB=0.0445 PL 0 MT 655 . T . 283 . DP=940;DP4=601,309,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00025,1.0,0.33;VDB=0.0215 PL 0 MT 656 . T . 283 . DP=938;DP4=594,314,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0227 PL 0 MT 657 . G . 283 . DP=938;DP4=613,300,0,5;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.004,1.5e-13,0.083,0.12;VDB=0.0414 PL 0 MT 658 . G . 283 . DP=938;DP4=592,300,1,2;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.26,2.3e-11,1.0,1.0;VDB=0.0414 PL 0 MT 659 . T . 283 . DP=934;DP4=608,290,1,4;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.041,6.2e-12,1.0,0.46;VDB=0.0445 PL 0 MT 660 . C . 283 . DP=931;DP4=594,302,2,1;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.2e-19,0.056,0.13;VDB=0.0302 PL 0 MT 661 . C . 283 . DP=928;DP4=586,312,0,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0156 PL 0 MT 662 . T . 283 . DP=925;DP4=614,298,0,1;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.33,7.3e-06,1.0,0.33;VDB=0.0233 PL 0 MT 663 . A . 283 . DP=922;DP4=592,311,0,1;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.35,1e-07,0.17,0.016;VDB=0.02 PL 0 MT 664 . G . 283 . DP=915;DP4=600,298,1,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.054,0.0044,1.0;VDB=0.0248 PL 0 MT 665 . C . 283 . DP=911;DP4=567,292,4,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.31,8.9e-10,1.0,1.0;VDB=0.0367 PL 0 MT 666 . C . 283 . DP=906;DP4=576,308,2,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,5.6e-11,0.48,0.28;VDB=0.0238 PL 0 MT 667 . T . 283 . DP=908;DP4=595,299,0,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 668 . T . 283 . DP=906;DP4=582,298,0,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 669 . T . 283 . DP=905;DP4=574,303,2,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,2.6e-10,0.26,0.22;VDB=0.0252 PL 0 MT 670 . C . 283 . DP=901;DP4=582,310,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 671 . T . 283 . DP=900;DP4=590,304,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 672 . A . 283 . DP=899;DP4=573,307,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 673 . T . 283 . DP=902;DP4=591,301,1,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.7e-08,0.05,1.0;VDB=0.02 PL 0 MT 674 . T . 283 . DP=898;DP4=576,300,1,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,9.9e-12,1.0,0.03 PL 0 MT 675 . A . 283 . DP=893;DP4=576,301,2,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,7.1e-10,0.36,1.0;VDB=0.01 PL 0 MT 676 . G . 283 . DP=888;DP4=586,290,2,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.6e-14,1.0,0.34;VDB=0.0135 PL 0 MT 677 . C . 283 . DP=879;DP4=562,290,2,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,0.0012,1.0,0.11;VDB=0.0202 PL 0 MT 678 . T . 283 . DP=875;DP4=585,279,0,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0367 PL 0 MT 679 . C . 283 . DP=872;DP4=571,284,1,1;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,9.3e-10,0.38,0.06;VDB=0.0175 PL 0 MT 680 . T . 283 . DP=874;DP4=583,283,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 681 . T . 283 . DP=870;DP4=569,275,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 682 . A . 283 . DP=860;DP4=568,276,2,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1e-11,0.15,1.0;VDB=0.0252 PL 0 MT 683 . G . 283 . DP=858;DP4=584,270,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 684 . T . 283 . DP=855;DP4=584,262,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 685 . A . 283 . DP=853;DP4=571,262,1,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,5.3e-08,1.0,0.23 PL 0 MT 686 . A . 283 . DP=848;DP4=571,262,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 687 . G . 283 . DP=847;DP4=585,257,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 688 . A . 283 . DP=845;DP4=569,262,1,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.5e-07,0.15,1.0;VDB=0.0253 PL 0 MT 689 . T . 283 . DP=845;DP4=580,257,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.025 PL 0 MT 690 . T . 283 . DP=852;DP4=569,264,0,1;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.32,8.9e-09,0.26,1.0 PL 0 MT 691 . A . 283 . DP=846;DP4=568,263,1,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.6e-05,0.085,0.031;VDB=0.0078 PL 0 MT 692 . C . 283 . DP=843;DP4=554,266,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 693 . A . 283 . DP=835;DP4=566,262,0,2;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.1,2.1e-10,0.086,0.023;VDB=0.0168 PL 0 MT 694 . C . 283 . DP=833;DP4=556,263,1,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.8e-08,0.073,0.12;VDB=0.0 PL 0 MT 695 . A . 283 . DP=838;DP4=569,262,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0207 PL 0 MT 696 . T . 283 . DP=837;DP4=577,253,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 697 . G . 283 . DP=836;DP4=575,249,1,2;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.22,3.7e-16,1.0,1.0;VDB=0.0245 PL 0 MT 698 . C . 283 . DP=836;DP4=559,256,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.0,0.18,1.0;VDB=0.0106 PL 0 MT 699 . A . 283 . DP=833;DP4=571,253,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 700 . A . 283 . DP=830;DP4=558,258,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 701 . G . 283 . DP=826;DP4=565,248,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0062 PL 0 MT 702 . C . 283 . DP=834;DP4=554,266,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.019 PL 0 MT 703 . A . 283 . DP=828;DP4=563,260,0,1;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.32,2.7e-05,1.0,1.0 PL 0 MT 704 . T . 283 . DP=828;DP4=567,239,0,1;MQ=39;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.3,0.054,0.098,1.0;VDB=0.033 PL 0 MT 705 . C . 283 . DP=825;DP4=558,247,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0394 PL 0 MT 706 . C . 283 . DP=827;DP4=551,253,3,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.56,2.9e-10,0.045,1.0;VDB=0.0268 PL 0 MT 707 . C . 283 . DP=825;DP4=556,248,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0123 PL 0 MT 708 . C . 283 . DP=820;DP4=553,250,1,1;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.53,3.1e-06,1.0,0.16;VDB=0.0193 PL 0 MT 709 . G . 283 . DP=833;DP4=566,256,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 710 . T . 283 . DP=834;DP4=567,260,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0193 PL 0 MT 711 . T . 283 . DP=833;DP4=557,256,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 712 . C . 283 . DP=838;DP4=566,256,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 713 . C . 283 . DP=839;DP4=559,268,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,7.3e-06,0.48,1.0;VDB=0.0158 PL 0 MT 714 . A . 283 . DP=861;DP4=560,296,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0188 PL 0 MT 715 . G . 283 . DP=856;DP4=560,279,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 716 . T . 283 . DP=856;DP4=557,290,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.019,0.47,1.0;VDB=0.0073 PL 0 MT 717 . G . 283 . DP=853;DP4=554,288,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.1e-06,0.15,0.12;VDB=0.0111 PL ok testWrite (vcf.test.test_vcf.TestWriterDictionaryMeta) ... ok test_samples (vcf.test.test_vcf.TestSamplesSpace) ... ok test_metadata_whitespace (vcf.test.test_vcf.TestMetadataWhitespace) ... ok test_mixed_filtering (vcf.test.test_vcf.TestMixedFiltering) ... ok test_aaf (vcf.test.test_vcf.TestRecord) ... ok test_call_rate (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_None_alt (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_breakend (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_deletion (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_insert_and_snp (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_insertion (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_insertion_and_deletion (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_multiple_snps (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_snp (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_snp_and_deletion (vcf.test.test_vcf.TestRecord) ... ok test_dunder_eq (vcf.test.test_vcf.TestRecord) ... ok test_heterozygosity (vcf.test.test_vcf.TestRecord) ... ok test_info_multiple_values (vcf.test.test_vcf.TestRecord) ... ok test_is_deletion (vcf.test.test_vcf.TestRecord) ... ok test_is_indel (vcf.test.test_vcf.TestRecord) ... ok test_is_snp (vcf.test.test_vcf.TestRecord) ... 0 MT 718 . A . 283 . DP=854;DP4=546,300,0,1;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.36,0.028,1.0,1.0 PL 0 MT 719 . G . 283 . DP=851;DP4=547,279,0,2;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.11,0.00011,1.0,0.1;VDB=0.0435 PL 0 MT 720 . T . 283 . DP=859;DP4=545,281,2,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,0.001,0.21,0.32;VDB=0.035 PL 0 MT 721 . T . 283 . DP=860;DP4=543,276,1,1;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.4e-10,0.18,1.0;VDB=0.0057 PL 0 MT 722 . C . 283 . DP=862;DP4=540,307,1,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.2e-05,0.14,0.46 PL 0 MT 723 . A . 283 . DP=857;DP4=545,297,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.14,0.25,0.036;VDB=0.0394 PL 0 MT 724 . C . 283 . DP=862;DP4=535,283,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0038,0.45,1.0;VDB=0.0094 PL 0 MT 725 . C . 283 . DP=864;DP4=532,286,1,2;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.28,4.9e-14,0.34,1.0;VDB=0.0417 PL 0 MT 726 . C . 283 . DP=861;DP4=537,308,0,1;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,2.3e-06,1.0,0.14;VDB=0.0042 PL 0 MT 727 . T . 283 . DP=861;DP4=548,290,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0325 PL 0 MT 728 . C . 283 . DP=860;DP4=541,312,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 729 . T . 283 . DP=863;DP4=547,283,0,1;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.34,7.1e-05,0.24,0.39;VDB=0.0025 PL 0 MT 730 . A . 283 . DP=865;DP4=543,282,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 731 . A . 283 . DP=867;DP4=542,280,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 732 . A . 283 . DP=868;DP4=542,317,1,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0024,0.22,0.44;VDB=0.0049 PL 0 MT 733 . T . 283 . DP=872;DP4=546,269,1,2;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.26,8.1e-05,0.31,0.14;VDB=0.0268 PL 0 MT 734 . C . 283 . DP=874;DP4=540,316,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.022 PL 0 MT 735 . A . 283 . DP=876;DP4=545,313,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0073 PL 0 MT 736 . C . 283 . DP=877;DP4=537,280,1,1;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,9.7e-05,0.096,1.0;VDB=0.0215 PL 0 MT 737 . C . 283 . DP=874;DP4=522,330,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 738 . A . 283 . DP=875;DP4=533,331,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0057 PL 0 MT 739 . C . 283 . DP=880;DP4=533,293,0,1;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.36,0.00013,0.043,1.0;VDB=0.0225 PL 0 MT 740 . G . 283 . DP=879;DP4=529,324,0,2;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,0.00048,0.21,1.0;VDB=0.0074 PL 0 MT 741 . A . 283 . DP=886;DP4=531,345,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.021 PL 0 MT 742 . T . 283 . DP=888;DP4=539,306,0,3;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.048,1.5e-08,1.0,1.0;VDB=0.0006 PL 0 MT 743 . C . 283 . DP=887;DP4=533,344,1,1;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.4e-08,1.0,0.048;VDB=0.035 PL 0 MT 744 . A . 283 . DP=888;DP4=538,316,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 745 . A . 283 . DP=891;DP4=532,320,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 746 . A . 283 . DP=887;DP4=528,317,1,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.3e-06,0.17,0.46;VDB=0.0123 PL 0 MT 747 . A . 283 . DP=884;DP4=524,347,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 748 . G . 283 . DP=883;DP4=520,311,1,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.1e-05,0.035,1.0;VDB=0.0302 PL 0 MT 749 . G . 283 . DP=888;DP4=503,316,0,1;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.39,0.027,0.035,1.0;VDB=0.044 PL 0 MT 750 . A G 222 . DP=890;DP4=0,3,483,315;MQ=45;FQ=-282.0;AF1=1.0;AC1=2.0;PV4=0.062,1.0,0.18,1.0;VDB=0.0435 GT:PL:GQ 1/1:255,255,0:99 Record(CHROM=20, POS=14370, REF=G, ALT=[A]) Call(sample=NA00001, CallData(GT=0|0, GQ=48, DP=1, HQ=[51, 51])) Call(sample=NA00002, CallData(GT=1|0, GQ=48, DP=8, HQ=[51, 51])) Call(sample=NA00003, CallData(GT=1/1, GQ=43, DP=5, HQ=[None, None])) Record(CHROM=20, POS=17330, REF=T, ALT=[A]) Call(sample=NA00001, CallData(GT=0|0, GQ=49, DP=3, HQ=[58, 50])) Call(sample=NA00002, CallData(GT=0|1, GQ=3, DP=5, HQ=[65, 3])) Call(sample=NA00003, CallData(GT=0/0, GQ=41, DP=3, HQ=None)) Record(CHROM=20, POS=1110696, REF=A, ALT=[G, T]) Call(sample=NA00001, CallData(GT=1|2, GQ=21, DP=6, HQ=[23, 27])) Call(sample=NA00002, CallData(GT=2|1, GQ=2, DP=0, HQ=[18, 2])) Call(sample=NA00003ok test_is_snp_for_n_alt (vcf.test.test_vcf.TestRecord) ... ok test_is_sv (vcf.test.test_vcf.TestRecord) ... ok test_is_sv_precise (vcf.test.test_vcf.TestRecord) ... ok test_is_transition (vcf.test.test_vcf.TestRecord) ... ok test_num_calls (vcf.test.test_vcf.TestRecord) ... ok test_pi (vcf.test.test_vcf.TestRecord) ... ok test_pickle (vcf.test.test_vcf.TestRecord) ... ok test_qual (vcf.test.test_vcf.TestRecord) ... ok test_sv_end (vcf.test.test_vcf.TestRecord) ... ok test_var_subtype (vcf.test.test_vcf.TestRecord) ... ok test_var_type (vcf.test.test_vcf.TestRecord) ... ok test_dunder_eq (vcf.test.test_vcf.TestCall) ... ok test_gt_bases (vcf.test.test_vcf.TestCall) ... ok test_gt_types (vcf.test.test_vcf.TestCall) ... ok test_phased (vcf.test.test_vcf.TestCall) ... ok testFetchRange (vcf.test.test_vcf.TestFetch) ... skipped 'test requires installation of PySAM.' testFetchesAllFromChromIfOnlyChromSpecified (vcf.test.test_vcf.TestFetch) ... skipped 'test requires installation of PySAM.' testFetchesFromStartIfStartOnlySpecified (vcf.test.test_vcf.TestFetch) ... skipped 'test requires installation of PySAM.' testNoVariantsForZeroLengthInterval (vcf.test.test_vcf.TestFetch) ... skipped 'test requires installation of PySAM.' testNoVariantsInRange (vcf.test.test_vcf.TestFetch) ... skipped 'test requires installation of PySAM.' testFetch (vcf.test.test_vcf.TestIssue201) ... skipped 'test requires installation of PySAM.' testIterate (vcf.test.test_vcf.TestIssue201) ... skipped 'test requires installation of PySAM.' test_vcf_metadata_parser_doesnt_break_with_empty_number_tags (vcf.test.test_vcf.TestIssue234) ... ok test_FT_one_two (vcf.test.test_vcf.TestIssue246) ... ok test_FT_pass_two (vcf.test.test_vcf.TestIssue246) ... ok test_remains_singleton_list (vcf.test.test_vcf.TestIssue254) ... ok test_is_filt_call_one (vcf.test.test_vcf.TestIsFiltered) ... ok test_is_filt_call_pass_two (vcf.test.test_vcf.TestIsFiltered) ... ok test_is_filt_call_unset (vcf.test.test_vcf.TestIsFiltered) ... ok test_is_filt_record (vcf.test.test_vcf.TestIsFiltered) ... ok testOpenFilehandle (vcf.test.test_vcf.TestOpenMethods) ... ok testOpenFilehandleGzipped (vcf.test.test_vcf.TestOpenMethods) ... ok testOpenFilename (vcf.test.test_vcf.TestOpenMethods) ... ok testOpenFilenameGzipped (vcf.test.test_vcf.TestOpenMethods) ... ok testCLIListSamples (vcf.test.test_vcf.TestSampleFilter) ... ok testCLIWithFilter (vcf.test.test_vcf.TestSampleFilter) ... ok testSampleFilterModule (vcf.test.test_vcf.TestSampleFilter) ... ok testApplyFilter (vcf.test.test_vcf.TestFilter) ... skipped 'test currently broken' testApplyMultipleFilters (vcf.test.test_vcf.TestFilter) ... skipped 'test currently broken' test_issue_16 (vcf.test.test_vcf.TestRegression) ... ok test_null_mono (vcf.test.test_vcf.TestRegression) ... , CallData(GT=2/2, GQ=35, DP=4, HQ=None)) Record(CHROM=20, POS=1230237, REF=T, ALT=[None]) Call(sample=NA00001, CallData(GT=0|0, GQ=54, DP=7, HQ=[56, 60])) Call(sample=NA00002, CallData(GT=0|0, GQ=48, DP=4, HQ=[51, 51])) Call(sample=NA00003, CallData(GT=0/0, GQ=61, DP=2, HQ=None)) Record(CHROM=20, POS=1231234, REF=AT, ALT=[A]) Call(sample=NA00001, CallData(GT=1|1, GQ=23, DP=7, HQ=[26, 30])) Call(sample=NA00002, CallData(GT=0|0, GQ=27, DP=9, HQ=[56, 60])) Call(sample=NA00003, CallData(GT=0|0, GQ=31, DP=10, HQ=[65, 71])) Record(CHROM=20, POS=1234567, REF=GTCT, ALT=[G, GTACT]) Call(sample=NA00001, CallData(GT=./., GQ=35, DP=4)) Call(sample=NA00002, CallData(GT=0/2, GQ=17, DP=2)) Call(sample=NA00003, CallData(GT=1/1, GQ=40, DP=3)) CallData(GT=0|0, GQ=48, DP=1, HQ=[51, 51]) CallData(GT=1|0, GQ=48, DP=8, HQ=[51, 51]) CallData(GT=1/1, GQ=43, DP=5, HQ=[None, None]) CallData(GT=0|0, GQ=49, DP=3, HQ=[58, 50]) CallData(GT=0|1, GQ=3, DP=5, HQ=[65, 3]) CallData(GT=0/0, GQ=41, DP=3, HQ=None) CallData(GT=1|2, GQ=21, DP=6, HQ=[23, 27]) CallData(GT=2|1, GQ=2, DP=0, HQ=[18, 2]) CallData(GT=2/2, GQ=35, DP=4, HQ=None) CallData(GT=0|0, GQ=54, DP=7, HQ=[56, 60]) CallData(GT=0|0, GQ=48, DP=4, HQ=[51, 51]) CallData(GT=0/0, GQ=61, DP=2, HQ=None) CallData(GT=1|1, GQ=23, DP=7, HQ=[26, 30]) CallData(GT=0|0, GQ=27, DP=9, HQ=[56, 60]) CallData(GT=0|0, GQ=31, DP=10, HQ=[65, 71]) CallData(GT=./., GQ=35, DP=4) CallData(GT=0/2, GQ=17, DP=2) CallData(GT=1/1, GQ=40, DP=3) /build/python-pyvcf-0.6.8+git20170215.476169c/vcf/test/null_genotype_mono.vcf ##fileformat=VCFv4.1 ##UnifiedGenotyper="analysis_type=UnifiedGenotyper input_file=[np_control.bam] read_buffer_size=null phone_home=STANDARD read_filter=[] intervals=[tests/read_chr.intervals] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL reference_sequence=/data/reference/ucsc/hg19/ucsc.hg19.fasta rodBind=[] nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=250 baq=OFF baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false defaultBaseQualities=-1 validation_strictness=SILENT unsafe=null num_threads=1 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false logging_level=info log_to_file=null help=false genotype_likelihoods_model=SNP p_nonref_model=EXACT heterozygosity=0.001 pcr_error_rate=1.0E-4 genotyping_mode=DISCOVERY output_mode=EMIT_ALL_SITES standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=30.0 computeSLOD=false alleles=(RodBinding name= source=UNBOUND) min_base_quality_score=17 max_deletion_fraction=0.05 multiallelic=false max_alternate_alleles=5 min_indel_count_for_genotyping=5 indel_heterozygosity=1.25E-4 indelGapContinuationPenalty=10.0 indelGapOpenPenalty=45.0 indelHaplotypeSize=80 bandedIndel=false indelDebug=false ignoreSNPAlleles=false dbsnp=(RodBinding name= source=UNBOUND) out=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub NO_HEADER=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub debug_file=null metrics_file=null annotation=[] excludeAnnotation=[] filter_mismatching_base_and_quals=false" ##reference=file:///data/reference/ucsc/hg19/ucsc.hg19.fasta ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA19239 chr1 65312657 . G . . . . GT ./. I: pybuild base:217: python3.7 setup.py test running test running build_py running egg_info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing requirements to PyVCF.egg-info/requires.txt writing top-level names to PyVCF.egg-info/top_level.txt reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'PyVCF.egg-info/SOURCES.txt' running egg_info creating /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/PyVCF.egg-info writing /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/PyVCF.egg-info/PKG-INFO writing dependency_links to /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/PyVCF.egg-info/dependency_links.txt writing entry points to /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/PyVCF.egg-info/entry_points.txt writing requirements to /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/PyVCF.egg-info/requires.txt writing top-level names to /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/PyVCF.egg-info/top_level.txt writing manifest file '/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/PyVCF.egg-info/SOURCES.txt' reading manifest file '/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file '/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/PyVCF.egg-info/SOURCES.txt' running build_ext skipping 'vcf/cparse.c' Cython extension (up-to-date) test_contig_idonly (vcf.test.test_vcf.TestVcfSpecs) Test VCF inputs with ##contig inputs containing only IDs. produced by bcftools 1.2+ ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/contig_idonly.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_vcf_4_0 (vcf.test.test_vcf.TestVcfSpecs) ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_vcf_4_1 (vcf.test.test_vcf.TestVcfSpecs) ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_vcf_4_1_bnd (vcf.test.test_vcf.TestVcfSpecs) ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1-bnd.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_vcf_4_1_sv (vcf.test.test_vcf.TestVcfSpecs) ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1-sv.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_vcf_4_2 (vcf.test.test_vcf.TestVcfSpecs) ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.2.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testCalls (vcf.test.test_vcf.TestGatkOutput) ... ok testFormats (vcf.test.test_vcf.TestGatkOutput) ... ok testInfos (vcf.test.test_vcf.TestGatkOutput) ... ok testSamples (vcf.test.test_vcf.TestGatkOutput) ... ok testCalls (vcf.test.test_vcf.TestFreebayesOutput) ... ok testFormats (vcf.test.test_vcf.TestFreebayesOutput) ... ok testInfos (vcf.test.test_vcf.TestFreebayesOutput) ... ok testParse (vcf.test.test_vcf.TestFreebayesOutput) ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/freebayes.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testSamples (vcf.test.test_vcf.TestFreebayesOutput) ... ok testParse (vcf.test.test_vcf.TestSamtoolsOutput) ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/samtools.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testParse (vcf.test.test_vcf.TestBcfToolsOutput) ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/bcftools.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_issue_214_is_snp (vcf.test.test_vcf.TestIssue214) ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-214.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_issue_214_ref_is_del_is_snp (vcf.test.test_vcf.TestIssue214) ... ok test_issue_214_ref_is_del_var_type (vcf.test.test_vcf.TestIssue214) ... ok test_issue_214_var_type (vcf.test.test_vcf.TestIssue214) ... ok testParse (vcf.test.test_vcf.Test1kg) ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.BufferedReader name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/1kg.vcf.gz'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_issue_49 (vcf.test.test_vcf.Test1kg) docstring for test_issue_49 ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue_49.vcf' mode='r' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_reader (vcf.test.test_vcf.Test1kgSites) The samples attribute should be the empty list. ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/1kg.sites.vcf' mode='r' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_writer (vcf.test.test_vcf.Test1kgSites) FORMAT should not be written if not present in the template and no ... ok testParse (vcf.test.test_vcf.TestGoNL) ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/gonl.chr20.release4.gtc.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_contig_line (vcf.test.test_vcf.TestGoNL) ... ok test_string_as_flag (vcf.test.test_vcf.TestStringAsFlag) A flag INFO field is declared as string (not allowed by the spec, ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/string_as_flag.vcf' mode='r' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_writer (vcf.test.test_vcf.TestInfoOrder) ... ok test_parse (vcf.test.test_vcf.TestInfoTypeCharacter) ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/info-type-character.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_write (vcf.test.test_vcf.TestInfoTypeCharacter) ... ok test_parse (vcf.test.test_vcf.TestParseMetaLine) ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/parse-meta-line.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_write (vcf.test.test_vcf.TestParseMetaLine) ... ok testWrite (vcf.test.test_vcf.TestGatkOutputWriter) ... Record(CHROM=1, POS=2, REF=A, ALT=[T]) T Call(sample=Germline, CallData(GT=0|1, MQ=[0, 40], HAP=[35, 46])) Call(sample=Tumor, CallData(GT=0|1, MQ=[0, 0], HAP=[35, 46])) Record(CHROM=1, POS=2, REF=T, ALT=[T[2:3[]) T[2:3[ Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['35>35', '46>46'])) Call(sample=Tumor, CallData(GT=0|1, MQ=[0, 40], BHAP=['35>35', '46>17'])) Record(CHROM=1, POS=3, REF=A, ALT=[]2:2]A]) ]2:2]A Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['35>35', '46>46'])) Call(sample=Tumor, CallData(GT=0|1, MQ=[0, 40], BHAP=['35>35', '46>17'])) Record(CHROM=2, POS=1, REF=G, ALT=[T]) T Call(sample=Germline, CallData(GT=1|0, MQ=[0, 40], HAP=[17, 23])) Call(sample=Tumor, CallData(GT=1|0, MQ=[0, 0], HAP=[17, 23])) Record(CHROM=2, POS=2, REF=G, ALT=[G[1:3[]) G[1:3[ Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['17>17', '23>23'], BCN=['1', '1'])) Call(sample=Tumor, CallData(GT=0|1, MQ=[0, 40], BHAP=['23>23', '17>46'], BCN=['2', '1'])) Record(CHROM=2, POS=3, REF=G, ALT=[]1:2]G]) ]1:2]G Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['17>17', '23>23'], BCN=['1', '1'])) Call(sample=Tumor, CallData(GT=0|1, MQ=[0, 40], BHAP=['23>23', '17>46'], BCN=['2', '1'])) Record(CHROM=2, POS=4, REF=G, ALT=[]2:6]G]) ]2:6]G Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['17>17', '23>23'], AHAP=[17, 23], BCN=['1', '1'])) Call(sample=Tumor, CallData(GT=0|0|1, MQ=[0, 0, 40], BHAP=['17>17', '23>23', '24>23'], AHAP=[17, 23, 23], BCN=['1', '2', '2'])) Record(CHROM=2, POS=6, REF=T, ALT=[T[2:4[]) T[2:4[ Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], BHAP=['17>17', '23>23'], AHAP=[17, 23], BCN=['1', '1'])) Call(sample=Tumor, CallData(GT=0|1|0, MQ=[0, 40, 0], BHAP=['17>17', '23>24', '24>24'], AHAP=[17, 23, 23], BCN=['1', '2', '2'])) Record(CHROM=2, POS=6, REF=T, ALT=[A]) A Call(sample=Germline, CallData(GT=0|1, MQ=[0, 40], HAP=[23, 17], AHAP=[23, 17])) Call(sample=Tumor, CallData(GT=0|1|1, MQ=[0, 0, 0], HAP=[17, 23, 24], AHAP=[17, 23, 23])) Record(CHROM=2, POS=8, REF=T, ALT=[A]) A Call(sample=Germline, CallData(GT=0|0, MQ=[0, 0], HAP=[23, 17], AHAP=[23, 17])) Call(sample=Tumor, CallData(GT=0|1|1, MQ=[0, 40, 40], HAP=[17, 23, 24], AHAP=[17, 23, 23])) Record(CHROM=1, POS=2827693, REF=CCGTGGATGCGGGGACCCGCATCCCCTCTCCCTTCACAGCTGAGTGACCCACATCCCCTCTCCCCTCGCA, ALT=[C]) C Call(sample=NA00001, CallData(GT=1/1, GQ=13.9)) Record(CHROM=2, POS=321682, REF=T, ALT=[]) Call(sample=NA00001, CallData(GT=0/1, GQ=12.0)) Record(CHROM=2, POS=14477084, REF=C, ALT=[]) Call(sample=NA00001, CallData(GT=0/1, GQ=12.0)) Record(CHROM=3, POS=9425916, REF=C, ALT=[]) Call(sample=NA00001, CallData(GT=1/1, GQ=15.0)) Record(CHROM=3, POS=12665100, REF=A, ALT=[]) Call(sample=NA00001, CallData(GT=./., GQ=0.0, CN=3, CNQ=16.2)) Record(CHROM=4, POS=18665128, REF=T, ALT=[]) Call(sample=NA00001, CallData(GT=./., GQ=0.0, CN=5, CNQ=8.3)) ['BLANK', 'NA12878', 'NA12891', 'NA12892', 'NA19238', 'NA19239', 'NA19240'] ##fileformat=VCFv4.1 ##UnifiedGenotyper="analysis_type=UnifiedGenotyper input_file=[reads.bam] read_buffer_size=null phone_home=NO_ET read_filter=[] intervals=[chr22:42020321-42527953] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL reference_sequence=/data/reference/ucsc/hg19/ucsc.hg19.fasta rodBind=[] nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=250 baq=CALCULATE_AS_NECESSARY baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false defaultBaseQualities=-1 validation_strictness=SILENT unsafe=null num_threads=2 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false logging_level=INFO log_to_file=gatk.log help=false genotype_likelihoods_model=SNP p_nonref_model=EXACT heterozygosity=0.001 pcr_error_rate=1.0E-4 genotyping_mode=DISCOVERY output_mode=EMIT_VARIANTS_ONLY standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=30.0 computeSLOD=false alleles=(RodBinding name= source=UNBOUND) min_base_quality_score=17 max_deletion_fraction=0.15 multiallelic=false max_alternate_alleles=5 min_indel_count_for_genotyping=5 indel_heterozygosity=1.25E-4 indelGapContinuationPenalty=10.0 indelGapOpenPenalty=45.0 indelHaplotypeSize=80 bandedIndel=false indelDebug=false ignoreSNPAlleles=false dbsnp=(RodBinding name=dbsnp source=/data/reference/dbSNP_132/dbsnp_132.hg19.vcf) out=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub NO_HEADER=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub debug_file=null metrics_file=null annotation=[] excludeAnnotation=[] filter_mismatching_base_and_quals=false" ##reference=file:///data/reference/ucsc/hg19/ucsc.hg19.fasta ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT BLANK NA12878 NA12891 NA12892 NA19238 NA19239 NA19240 chr22 42522392 rs28371738 G A 2951.95 . AC=2;AF=0.143;AN=14;BaseQRankSum=0.375;DB;DP=1506;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=123.5516;MQ=253.92;MQ0=0;MQRankSum=0.685;QD=5.9;ReadPosRankSum=0.59 GT:AD:DP:GQ:PL 0/0:6,0:6:18.04:0,18,211 0/1:138,107:250:99.0:1961,0,3049 0/1:169,77:250:99.0:1038,0,3533 0/0:249,0:250:99.0:0,600,5732 0/0:248,1:250:99.0:0,627,6191 0/0:250,0:250:99.0:0,615,5899 0/0:250,0:250:99.0:0,579,5674 chr22 42522613 rs1135840 G C 11611.03 . AC=6;AF=0.429;AN=14;BaseQRankSum=16.289;DB;DP=1518;DS;Dels=0.03;FS=0.0;HRun=0;HaplotypeScore=142.5716;MQ=242.46;MQ0=0;MQRankSum=2.01;QD=9.16;ReadPosRankSum=-1.731 GT:AD:DP:GQ:PL 0/1:13,4:17:62.64:63,0,296 0/1:118,127:246:99.0:2396,0,1719 0/0:241,0:244:99.0:0,459,4476 0/1:161,85:246:99.0:1489,0,2353 0/1:110,132:242:99.0:2561,0,1488 0/1:106,135:242:99.0:2613,0,1389 0/1:116,126:243:99.0:2489,0,1537 chr22 42522755 . C G 36.98 . AC=1;AF=0.071;AN=14;BaseQRankSum=-14.866;DP=1527;DS;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=253.4254;MQ=197.36;MQ0=2;MQRankSum=-10.81;QD=0.15;ReadPosRankSum=-17.244 GT:AD:DP:GQ:PL 0/0:26,1:27:51.08:0,51,570 0/0:208,40:248:99.0:0,236,4169 0/0:192,56:249:99.0:0,114,4292 0/1:179,66:245:75.42:75,0,3683 0/0:214,32:246:99.0:0,172,4235 0/0:200,49:249:61.05:0,61,4049 0/0:195,50:246:32.07:0,32,3757 chr22 42523003 rs116917064 A G 7113.55 . AC=8;AF=0.571;AN=14;BaseQRankSum=6.026;DB;DP=1433;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=101.7894;MQ=182.04;MQ0=0;MQRankSum=-2.501;QD=4.96;ReadPosRankSum=8.294 GT:AD:DP:GQ:PL 0/1:10,2:12:0.62:1,0,257 1/1:9,173:183:99.0:2385,273,0 0/1:153,95:249:99.0:355,0,2355 0/1:140,110:250:99.0:1334,0,2242 0/1:164,85:249:99.0:1070,0,2279 0/1:160,90:250:99.0:1245,0,2300 0/1:156,81:238:99.0:724,0,2764 chr22 42523077 . A G 54.31 . AC=1;AF=0.071;AN=14;BaseQRankSum=-0.563;DP=1521;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=54.8434;MQ=164.04;MQ0=1;MQRankSum=-2.419;QD=2.59;ReadPosRankSum=-1.229 GT:AD:DP:GQ:PL 0/1:17,4:21:92.74:93,0,533 0/0:249,1:250:99.0:0,544,6985 0/0:250,0:250:99.0:0,577,6968 0/0:248,2:250:99.0:0,605,7687 0/0:248,1:249:99.0:0,583,7300 0/0:246,2:249:99.0:0,626,7473 0/0:248,1:249:99.0:0,594,7553 chr22 42523209 rs28371730 T C 15556.89 . AC=8;AF=0.571;AN=14;BaseQRankSum=3.458;DB;DP=1509;DS;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=120.8206;MQ=221.07;MQ0=0;MQRankSum=-4.945;QD=10.31;ReadPosRankSum=0.639 GT:AD:DP:GQ:PL 0/1:3,6:9:99.0:154,0,101 1/1:6,237:247:99.0:4532,308,0 0/1:130,117:248:99.0:1399,0,3147 0/1:112,129:244:99.0:2641,0,2556 0/1:115,127:247:99.0:2320,0,2526 0/1:115,128:248:99.0:2546,0,2520 0/1:143,104:249:99.0:1965,0,3288 chr22 42523211 rs2004511 T C 2445.52 . AC=2;AF=0.143;AN=14;BaseQRankSum=10.587;DB;DP=1509;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=102.7564;MQ=221.5;MQ0=0;MQRankSum=-6.926;QD=4.89;ReadPosRankSum=2.057 GT:AD:DP:GQ:PL 0/0:9,0:9:24.06:0,24,289 0/1:136,113:250:99.0:1384,0,2176 0/1:146,104:250:99.0:1108,0,2809 0/0:247,3:250:99.0:0,439,5546 0/0:245,2:249:99.0:0,459,5316 0/0:248,2:250:99.0:0,459,5404 0/0:248,1:250:99.0:0,533,6069 chr22 42523409 rs1985842 G T 6801.9 . AC=6;AF=0.429;AN=14;BaseQRankSum=20.509;DB;DP=1454;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=150.8967;MQ=200.12;MQ0=0;MQRankSum=4.472;QD=5.65;ReadPosRankSum=9.396 GT:AD:DP:GQ:PL 0/1:1,3:4:25.84:53,0,26 0/1:153,95:249:99.0:1597,0,1798 0/0:245,4:250:99.0:0,336,4079 0/1:168,82:250:99.0:1339,0,1880 0/1:147,103:250:99.0:1522,0,1805 0/1:156,94:250:99.0:1341,0,2322 0/1:129,71:201:99.0:949,0,2082 chr22 42523805 rs28371725 C T 1637.33 . AC=1;AF=0.071;AN=14;BaseQRankSum=-0.379;DB;DP=1516;DS;Dels=0.0;FS=0.0;HRun=2;HaplotypeScore=77.2321;MQ=226.05;MQ0=0;MQRankSum=2.862;QD=6.55;ReadPosRankSum=0.064 GT:AD:DP:GQ:PL 0/0:16,0:16:39.09:0,39,475 0/0:248,1:249:99.0:0,613,7187 0/1:132,116:248:99.0:1676,0,2916 0/0:248,0:248:99.0:0,625,7171 0/0:248,2:250:99.0:0,604,7252 0/0:250,0:250:99.0:0,631,7426 0/0:248,1:249:99.0:0,584,6964 chr22 42523943 rs16947 A G 23661.1 . AC=8;AF=0.571;AN=14;BaseQRankSum=4.602;DB;DP=1514;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=38.3217;MQ=238.64;MQ0=0;MQRankSum=2.485;QD=15.63;ReadPosRankSum=3.749 GT:AD:DP:GQ:PL 0/1:9,5:14:99.0:163,0,303 1/1:3,246:250:99.0:8092,667,0 0/1:129,116:246:99.0:3190,0,2852 0/1:149,98:247:99.0:2429,0,3588 0/1:129,118:247:99.0:3267,0,3052 0/1:122,123:245:99.0:3428,0,3052 0/1:124,119:244:99.0:3092,0,2845 chr22 42524150 . C G 3758.65 . AC=8;AF=0.571;AN=14;BaseQRankSum=24.314;DP=1506;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=172.5901;MQ=242.92;MQ0=0;MQRankSum=11.537;QD=2.5;ReadPosRankSum=-9.185 GT:AD:DP:GQ:PL 1/1:3,3:6:5.98:46,6,0 0/1:161,88:250:99.0:708,0,300 0/1:161,88:250:99.0:635,0,308 0/1:160,90:250:99.0:658,0,229 0/1:180,69:250:99.0:478,0,113 0/1:176,73:250:99.0:530,0,271 0/1:170,79:249:99.0:704,0,133 chr22 42524435 rs1807313 T A 5252.25 . AC=3;AF=0.214;AN=14;BaseQRankSum=-0.192;DB;DP=1526;DS;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=152.3866;MQ=242.06;MQ0=0;MQRankSum=1.923;QD=9.99;ReadPosRankSum=3.008 GT:AD:DP:GQ:PL 0/1:7,19:26:99.0:456,0,195 0/0:250,0:250:99.0:0,698,8167 0/0:246,2:249:99.0:0,673,7735 0/0:248,2:250:99.0:0,685,7919 0/0:250,0:250:99.0:0,688,7814 0/1:120,126:247:99.0:2539,0,3250 0/1:131,110:246:99.0:2257,0,3278 chr22 42524696 rs58440431 T C 6423.61 . AC=2;AF=0.143;AN=14;BaseQRankSum=3.119;DB;DP=1509;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=53.0005;MQ=230.78;MQ0=0;MQRankSum=2.825;QD=12.85;ReadPosRankSum=2.051 GT:AD:DP:GQ:PL 0/0:9,0:9:27.08:0,27,351 0/1:132,116:250:99.0:3341,0,3914 0/1:141,108:250:99.0:3082,0,3917 0/0:248,1:250:99.0:0,692,8578 0/0:250,0:250:99.0:0,743,8836 0/0:247,2:250:99.0:0,695,8726 0/0:249,1:250:99.0:0,699,8650 chr22 42524947 rs3892097 C T 731.18 . AC=2;AF=0.143;AN=14;BaseQRankSum=0.602;DB;DP=1495;DS;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=154.5421;MQ=217.65;MQ0=0;MQRankSum=4.304;QD=1.47;ReadPosRankSum=1.019 GT:AD:DP:GQ:PL 0/0:3,0:3:8.99:0,9,89 0/1:108,75:244:99.0:403,0,1684 0/1:125,74:242:99.0:375,0,2335 0/0:227,1:249:99.0:0,460,5036 0/0:226,1:247:99.0:0,448,4884 0/0:192,1:247:99.0:0,400,4405 0/0:194,1:247:99.0:0,405,4694 chr22 42525132 rs1058164 G C 14639.91 . AC=5;AF=0.357;AN=14;BaseQRankSum=4.944;DB;DP=1508;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=38.1229;MQ=207.02;MQ0=6;MQRankSum=2.51;QD=11.71;ReadPosRankSum=0.306 GT:AD:DP:GQ:PL 0/0:8,0:8:24.05:0,24,309 0/1:125,125:250:99.0:3147,0,3294 0/0:245,1:248:99.0:0,549,7172 0/1:139,109:248:99.0:2470,0,3232 0/1:136,107:243:99.0:2545,0,3408 0/1:116,130:247:99.0:3206,0,2926 0/1:122,124:247:99.0:3271,0,3300 chr22 42525772 rs28371706 G A 7552.52 . AC=4;AF=0.286;AN=14;BaseQRankSum=12.028;DB;DP=1506;DS;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=89.8512;MQ=222.09;MQ0=0;MQRankSum=5.2;QD=9.99;ReadPosRankSum=2.275 GT:AD:DP:GQ:PL 0/1:4,2:6:29.34:29,0,147 0/0:249,0:249:99.0:0,592,6835 0/0:249,1:250:99.0:0,590,7041 0/0:248,0:248:99.0:0,652,7316 0/1:126,120:248:99.0:2668,0,2833 0/1:134,113:247:99.0:2453,0,2485 0/1:137,113:250:99.0:2403,0,2988 chr22 42525798 rs28371705 G C 1954.58 . AC=2;AF=0.143;AN=14;BaseQRankSum=6.229;DB;DP=1509;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=36.0442;MQ=228.55;MQ0=0;MQRankSum=0.852;QD=3.91;ReadPosRankSum=6.52 GT:AD:DP:GQ:PL 0/0:9,0:9:27.08:0,27,342 0/1:164,85:250:99.0:981,0,3519 0/1:171,79:250:99.0:1020,0,3665 0/0:249,1:250:99.0:0,526,6474 0/0:249,1:250:99.0:0,550,6481 0/0:248,2:250:99.0:0,542,6933 0/0:250,0:250:99.0:0,604,7282 chr22 42525811 rs28371704 T C 3688.26 . AC=2;AF=0.143;AN=14;BaseQRankSum=4.752;DB;DP=1510;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=36.9902;MQ=210.28;MQ0=0;MQRankSum=2.309;QD=7.38;ReadPosRankSum=6.262 GT:AD:DP:GQ:PL 0/0:10,0:10:27.06:0,27,333 0/1:163,86:249:99.0:1958,0,3391 0/1:167,78:245:99.0:1730,0,3945 0/0:248,1:249:99.0:0,542,6887 0/0:246,1:247:99.0:0,550,6569 0/0:247,1:250:99.0:0,548,6954 0/0:249,1:250:99.0:0,557,7079 chr22 42525821 rs28371703 G T 3940.9 . AC=2;AF=0.143;AN=14;BaseQRankSum=4.652;DB;DP=1510;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=34.0483;MQ=210.28;MQ0=0;MQRankSum=2.924;QD=7.88;ReadPosRankSum=5.487 GT:AD:DP:GQ:PL 0/0:10,0:10:24.08:0,24,317 0/1:164,85:250:99.0:2033,0,3659 0/1:167,79:249:99.0:1907,0,4271 0/0:249,1:250:99.0:0,565,7321 0/0:249,1:250:99.0:0,545,7102 0/0:248,2:250:99.0:0,536,7254 0/0:249,0:250:99.0:0,605,7633 chr22 42525952 rs71328650 C A 5872.92 . AC=7;AF=0.5;AN=14;BaseQRankSum=25.986;DB;DP=1505;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=144.2979;MQ=173.55;MQ0=0;MQRankSum=3.66;QD=4.68;ReadPosRankSum=7.152 GT:AD:DP:GQ:PL 1/1:2,3:5:6.0:53,6,0 0/1:132,117:250:99.0:1397,0,702 0/0:248,1:250:99.0:0,245,2219 0/1:166,83:250:99.0:1151,0,934 0/1:164,86:250:99.0:1070,0,1147 0/1:170,80:250:99.0:1009,0,1141 0/1:162,87:250:99.0:1194,0,1085 chr22 42526049 . C G 8544.41 . AC=10;AF=0.714;AN=14;BaseQRankSum=-8.121;DP=1505;DS;Dels=0.01;FS=0.0;HRun=0;HaplotypeScore=241.7335;MQ=162.18;MQ0=2;MQRankSum=-1.399;QD=6.81;ReadPosRankSum=2.132 GT:AD:DP:GQ:PL 1/1:0,5:5:3.0:26,3,0 0/1:86,162:248:99.0:1053,0,1167 0/0:235,12:248:99.0:0,378,3886 0/1:108,137:245:99.0:782,0,1662 1/1:3,242:245:99.0:2351,264,0 1/1:5,245:250:99.0:2193,222,0 1/1:4,242:246:99.0:2140,240,0 chr22 42526449 . T A 151.47 . AC=1;AF=0.071;AN=14;BaseQRankSum=2.662;DP=1226;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=41.2083;MQ=240.47;MQ0=0;MQRankSum=0.578;QD=4.89;ReadPosRankSum=3.611 GT:AD:DP:GQ:PL 0/1:23,8:31:99.0:190,0,694 0/0:188,0:190:99.0:0,478,5376 0/0:187,0:187:99.0:0,493,5322 0/0:247,0:249:99.0:0,634,6728 0/0:185,0:185:99.0:0,487,5515 0/0:202,0:202:99.0:0,520,5857 0/0:181,1:182:99.0:0,440,5362 chr22 42526484 rs28371699 A C 4220.99 . AC=6;AF=0.429;AN=14;BaseQRankSum=-17.855;DB;DP=1532;DS;Dels=0.02;FS=0.0;HRun=0;HaplotypeScore=136.8893;MQ=233.92;MQ0=0;MQRankSum=3.448;QD=3.29;ReadPosRankSum=-2.663 GT:AD:DP:GQ:PL 0/1:16,15:31:99.0:238,0,428 0/1:112,135:247:99.0:796,0,1908 0/0:227,13:241:99.0:0,433,4747 0/1:108,133:242:99.0:588,0,2014 0/1:90,154:245:99.0:1055,0,1892 0/1:112,131:246:99.0:741,0,2222 0/1:108,137:246:99.0:803,0,2266 chr22 42526549 rs56011157 C T 14276.31 . AC=8;AF=0.571;AN=14;BaseQRankSum=17.75;DB;DP=1537;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=87.3394;MQ=231.34;MQ0=0;MQRankSum=4.781;QD=9.29;ReadPosRankSum=7.463 GT:AD:DP:GQ:PL 0/1:22,15:37:99.0:251,0,330 1/1:23,227:250:99.0:5404,430,0 0/1:151,98:250:99.0:1878,0,2475 0/1:153,97:250:99.0:1769,0,2410 0/1:149,100:250:99.0:1792,0,2569 0/1:164,84:250:99.0:1440,0,2646 0/1:149,98:248:99.0:1742,0,2601 chr22 42526561 rs28695233 G T 4524.61 . AC=7;AF=0.5;AN=14;BaseQRankSum=9.714;DB;DP=1538;DS;Dels=0.0;FS=0.0;HRun=1;HaplotypeScore=98.8415;MQ=220.45;MQ0=0;MQRankSum=9.43;QD=3.02;ReadPosRankSum=7.682 GT:AD:DP:GQ:PL 0/0:22,15:38:15.74:0,16,609 1/1:4,240:249:99.0:2685,237,0 0/1:142,108:250:99.0:505,0,3133 0/1:138,109:249:99.0:521,0,3281 0/1:150,99:249:99.0:336,0,3601 0/1:153,93:250:99.0:194,0,3695 0/1:148,97:249:99.0:283,0,3093 chr22 42526562 rs75276289 G C 3780.51 . AC=6;AF=0.429;AN=14;BaseQRankSum=15.2;DB;DP=1540;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=116.437;MQ=215.67;MQ0=0;MQRankSum=9.072;QD=2.52;ReadPosRankSum=10.863 GT:AD:DP:GQ:PL 0/0:25,15:40:17.73:0,18,633 0/1:50,199:250:99.0:1522,0,283 0/1:143,106:250:99.0:600,0,2844 0/1:143,107:250:99.0:605,0,3002 0/1:151,99:250:99.0:432,0,3352 0/1:157,93:250:99.0:254,0,3483 0/1:149,99:248:99.0:368,0,2999 chr22 42526567 rs76312385 G A 434.33 . AC=1;AF=0.071;AN=14;BaseQRankSum=18.089;DB;DP=1540;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=89.3746;MQ=219.8;MQ0=0;MQRankSum=6.196;QD=1.74;ReadPosRankSum=7.564 GT:AD:DP:GQ:PL 0/0:22,18:40:4.68:0,5,427 0/1:34,215:250:56.26:473,0,56 0/0:142,108:250:20.78:0,21,2288 0/0:142,108:250:49.48:0,49,2451 0/0:152,97:250:99.0:0,210,2801 0/0:150,100:250:34.96:0,35,2515 0/0:148,102:250:77.19:0,77,2590 chr22 42526571 rs74644586 C G 339.6 . AC=1;AF=0.071;AN=14;BaseQRankSum=-11.48;DB;DP=1540;DS;Dels=0.02;FS=0.0;HRun=4;HaplotypeScore=93.3402;MQ=218.52;MQ0=0;MQRankSum=3.709;QD=1.36;ReadPosRankSum=6.322 GT:AD:DP:GQ:PL 0/0:22,18:40:36.46:0,36,689 0/1:4,232:239:30.49:378,0,30 0/0:138,110:249:99.0:0,295,4017 0/0:137,111:249:99.0:0,250,4041 0/0:147,97:245:99.0:0,321,4348 0/0:150,97:247:99.0:0,358,4657 0/0:144,101:247:99.0:0,275,4123 chr22 42526573 rs1080996 T G 12579.34 . AC=8;AF=0.571;AN=14;BaseQRankSum=6.163;DB;DP=1540;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=76.655;MQ=224.49;MQ0=0;MQRankSum=1.355;QD=8.17;ReadPosRankSum=5.794 GT:AD:DP:GQ:PL 0/1:22,18:40:99.0:200,0,668 1/1:4,244:248:99.0:5175,439,0 0/1:136,110:250:99.0:1862,0,3521 0/1:136,113:249:99.0:1734,0,3677 0/1:144,99:250:99.0:1119,0,3818 0/1:150,99:250:99.0:1196,0,4178 0/1:145,104:250:99.0:1293,0,3628 chr22 42526580 rs1080995 G C 16619.47 . AC=8;AF=0.571;AN=14;BaseQRankSum=7.991;DB;DP=1541;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=56.1489;MQ=221.29;MQ0=0;MQRankSum=2.223;QD=10.78;ReadPosRankSum=4.443 GT:AD:DP:GQ:PL 0/1:22,19:41:99.0:335,0,664 1/1:15,234:250:99.0:5895,337,0 0/1:137,113:250:99.0:2421,0,3301 0/1:134,116:250:99.0:2262,0,3430 0/1:144,105:250:99.0:1929,0,3421 0/1:148,101:250:99.0:1778,0,3867 0/1:142,108:250:99.0:1999,0,3334 chr22 42526634 . T C 32.6 . AC=1;AF=0.071;AN=14;BaseQRankSum=1.147;DP=1225;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=50.0151;MQ=240.65;MQ0=0;MQRankSum=1.151;QD=1.3;ReadPosRankSum=1.276 GT:AD:DP:GQ:PL 0/1:21,4:25:71.04:71,0,702 0/0:187,2:189:99.0:0,481,6080 0/0:233,0:233:99.0:0,667,7351 0/0:230,0:230:99.0:0,667,7394 0/0:174,1:175:99.0:0,446,5469 0/0:194,2:196:99.0:0,498,6239 0/0:174,0:175:99.0:0,511,5894 chr22 42526679 . G C 60.6 . AC=1;AF=0.071;AN=14;BaseQRankSum=-12.425;DP=1525;DS;Dels=0.09;FS=0.0;HRun=1;HaplotypeScore=331.3182;MQ=215.48;MQ0=0;MQRankSum=-14.68;QD=0.24;ReadPosRankSum=-13.323 GT:AD:DP:GQ:PL 0/0:23,0:23:66.17:0,66,829 0/1:175,56:232:99.0:99,0,4273 0/0:199,26:226:76.45:0,76,5104 0/0:196,37:233:41.98:0,42,5109 0/0:170,47:218:99.0:0,162,4505 0/0:188,36:224:99.0:0,230,4974 0/0:177,47:225:99.0:0,167,4592 chr22 42526694 rs1065852 G A 4420.63 . AC=2;AF=0.143;AN=14;BaseQRankSum=8.566;DB;DP=1529;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=117.6833;MQ=214.96;MQ0=0;MQRankSum=5.852;QD=8.84;ReadPosRankSum=1.454 GT:AD:DP:GQ:PL 0/0:29,0:29:81.24:0,81,1040 0/1:136,114:250:99.0:2333,0,3170 0/1:145,104:250:99.0:2087,0,2794 0/0:250,0:250:99.0:0,586,6963 0/0:247,2:250:99.0:0,497,6185 0/0:248,2:250:99.0:0,544,6640 0/0:250,0:250:99.0:0,571,6444 chr22 42527471 rs28633410 T C 26831.16 . AC=10;AF=0.833;AN=12;BaseQRankSum=-1.092;DB;DP=1501;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=79.3853;MQ=176.86;MQ0=0;MQRankSum=-2.644;QD=17.89;ReadPosRankSum=2.185 GT:AD:DP:GQ:PL ./.:.:.:.:. 1/1:1,249:250:99.0:5741,478,0 0/1:102,148:250:99.0:3026,0,1748 0/1:115,132:250:99.0:2716,0,1896 1/1:1,249:250:99.0:5040,392,0 1/1:1,248:250:99.0:5109,427,0 1/1:4,245:249:99.0:5199,306,0 chr22 42527533 rs28624811 A G 13619.46 . AC=7;AF=0.583;AN=12;BaseQRankSum=-8.893;DB;DP=1501;DS;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=86.1948;MQ=179.18;MQ0=0;MQRankSum=0.472;QD=9.08;ReadPosRankSum=0.778 GT:AD:DP:GQ:PL ./.:.:.:.:. 1/1:2,241:243:99.0:4171,416,0 0/1:113,132:245:99.0:2000,0,2018 0/1:120,126:246:99.0:1781,0,1970 0/1:131,118:249:99.0:1885,0,1784 0/1:122,126:248:99.0:1893,0,1807 0/1:122,127:249:99.0:1890,0,2119 chr22 42527793 rs1080989 C T 3454.66 . AC=2;AF=0.167;AN=12;BaseQRankSum=-3.007;DB;DP=1074;DS;Dels=0.01;FS=0.0;HRun=1;HaplotypeScore=75.7865;MQ=209.0;MQ0=0;MQRankSum=3.014;QD=9.36;ReadPosRankSum=0.618 GT:AD:DP:GQ:PL ./.:.:.:.:. 0/1:72,90:162:99.0:1699,0,1767 0/1:103,96:202:99.0:1756,0,2532 0/0:188,0:188:99.0:0,526,5889 0/0:160,0:160:99.0:0,457,4983 0/0:197,0:198:99.0:0,544,6100 0/0:156,0:156:99.0:0,439,5041 chr22 42527891 . T A 109.83 . AC=5;AF=0.417;AN=12;BaseQRankSum=11.235;DP=1500;DS;Dels=0.0;FS=0.0;HRun=0;HaplotypeScore=638.4601;MQ=166.82;MQ0=0;MQRankSum=1.444;QD=0.09;ReadPosRankSum=0.839 GT:AD:DP:GQ:PL ./.:.:.:.:. 0/1:238,7:248:13.7:14,0,38 0/0:246,3:250:5.97:0,6,45 0/1:239,11:250:31.42:31,0,54 0/1:232,16:250:49.09:49,0,76 0/1:233,14:249:52.1:52,0,53 0/1:238,11:250:12.71:13,0,36 /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/gatk.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testWrite (vcf.test.test_vcf.TestBcfToolsOutputWriter) ... ##fileformat=VCFv4.1 ##samtoolsVersion=0.1.18 (r982:295) ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT sample MT 1 . G . 283 . DP=245;DP4=240,0,0,0;MQ=30;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 2 . A . 283 . DP=250;DP4=247,0,0,0;MQ=31;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 3 . T . 283 . DP=253;DP4=252,0,0,0;MQ=31;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 4 . C . 283 . DP=257;DP4=253,0,0,0;MQ=32;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 5 . A . 283 . DP=263;DP4=258,0,0,0;MQ=32;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 6 . C . 283 . DP=268;DP4=259,0,0,0;MQ=33;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 7 . A . 283 . DP=272;DP4=265,0,2,0;MQ=34;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.9e-05,0.32,1.0;VDB=0.0111 PL 0 MT 8 . G . 283 . DP=275;DP4=272,0,0,0;MQ=34;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 9 . G . 283 . DP=276;DP4=266,0,1,0;MQ=34;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.006,0.36,0.13 PL 0 MT 10 . T . 283 . DP=277;DP4=269,0,1,0;MQ=34;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.7e-05,0.36,1.0;VDB=0.0 PL 0 MT 11 . C . 283 . DP=279;DP4=274,0,1,0;MQ=34;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0031,0.36,0.12 PL 0 MT 12 . T . 283 . DP=286;DP4=284,0,0,0;MQ=35;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 13 . A . 283 . DP=289;DP4=281,0,0,0;MQ=36;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 14 . T . 283 . DP=290;DP4=288,0,0,0;MQ=36;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 15 . C . 283 . DP=290;DP4=280,0,0,0;MQ=36;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 16 . A . 283 . DP=293;DP4=290,0,0,0;MQ=36;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 17 . C . 283 . DP=297;DP4=290,0,0,0;MQ=36;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0111 PL 0 MT 18 . C . 283 . DP=298;DP4=284,0,0,0;MQ=37;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 19 . C . 283 . DP=301;DP4=293,0,1,0;MQ=37;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.0,0.32,0.38;VDB=0.0111 PL 0 MT 20 . T . 283 . DP=311;DP4=307,0,0,0;MQ=37;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 21 . A . 283 . DP=311;DP4=305,0,0,0;MQ=38;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 22 . T . 283 . DP=305;DP4=303,0,0,0;MQ=38;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 23 . T . 283 . DP=309;DP4=305,0,0,0;MQ=38;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 24 . A . 283 . DP=309;DP4=301,0,0,0;MQ=39;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 25 . A . 283 . DP=308;DP4=302,0,1,0;MQ=39;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.2e-09,0.28,1.0 PL 0 MT 26 . C . 283 . DP=309;DP4=302,0,0,0;MQ=39;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 27 . C . 283 . DP=307;DP4=293,0,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 28 . A . 283 . DP=309;DP4=305,0,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 29 . C . 283 . DP=308;DP4=302,0,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 30 . T . 283 . DP=305;DP4=303,0,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 31 . C . 283 . DP=302;DP4=293,0,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 32 . A . 283 . DP=303;DP4=294,0,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 33 . C . 283 . DP=300;DP4=287,0,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 34 . G . 280 . DP=296;DP4=288,0,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 35 . G . 283 . DP=296;DP4=280,0,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0111 PL 0 MT 36 . G . 283 . DP=291;DP4=272,0,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 37 . A . 283 . DP=290;DP4=276,0,1,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00038,0.22,1.0;VDB=0.0212 PL 0 MT 38 . G . 283 . DP=288;DP4=282,0,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 39 . C . 283 . DP=289;DP4=264,0,2,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.3e-11,1.0,1.0;VDB=0.004 PL 0 MT 40 . T . 283 . DP=288;DP4=285,0,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 41 . C . 283 . DP=284;DP4=276,0,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 42 . T . 283 . DP=279;DP4=277,0,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 43 . C . 283 . DP=279;DP4=268,0,0,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 44 . C . 283 . DP=280;DP4=265,0,1,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0064,0.17,1.0 PL 0 MT 45 . A . 283 . DP=279;DP4=272,0,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 46 . T . 283 . DP=279;DP4=276,0,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 47 . G . 283 . DP=280;DP4=277,0,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 48 . C . 283 . DP=281;DP4=271,0,0,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 49 . A . 283 . DP=278;DP4=272,0,0,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0051 PL 0 MT 50 . T . 283 . DP=276;DP4=274,0,0,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 51 . T . 283 . DP=271;DP4=261,0,0,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 52 . T . 283 . DP=271;DP4=262,0,0,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 53 . G . 283 . DP=273;DP4=271,0,0,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 54 . G . 283 . DP=274;DP4=264,0,0,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 55 . T . 283 . DP=271;DP4=268,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 56 . A . 283 . DP=274;DP4=266,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 57 . T . 283 . DP=272;DP4=270,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 58 . T . 283 . DP=273;DP4=266,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 59 . T . 283 . DP=277;DP4=272,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 60 . T . 283 . DP=279;DP4=272,0,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 61 . C . 283 . DP=285;DP4=275,0,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 62 . G . 283 . DP=285;DP4=278,0,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-08,0.097,0.066 PL 0 MT 63 . T . 283 . DP=285;DP4=285,0,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 64 . C . 283 . DP=283;DP4=276,0,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 65 . T . 283 . DP=277;DP4=277,0,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 66 . G . 283 . DP=276;DP4=274,0,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 67 . G . 283 . DP=275;DP4=264,0,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 68 . G . 283 . DP=281;DP4=265,0,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 69 . G . 283 . DP=288;DP4=269,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 70 . G . 283 . DP=296;DP4=275,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 71 . G . 283 . DP=300;DP4=272,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 72 . T . 283 . DP=301;DP4=285,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0367 PL 0 MT 73 . A . 283 . DP=295;DP4=283,0,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0066,1.0,1.0 PL 0 MT 74 . T . 283 . DP=298;DP4=298,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 75 . G . 283 . DP=300;DP4=299,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 76 . C . 283 . DP=304;DP4=281,0,2,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.3e-13,1.0,1.0;VDB=0.0342 PL 0 MT 77 . A . 283 . DP=303;DP4=293,0,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00064,0.019,0.25;VDB=0.02 PL 0 MT 78 . C . 283 . DP=302;DP4=283,0,3,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.1e-13,0.21,0.36;VDB=0.0026 PL 0 MT 79 . G . 283 . DP=301;DP4=285,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 80 . C . 283 . DP=308;DP4=286,0,1,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,9.8e-07,0.0098,0.14;VDB=0.0217 PL 0 MT 81 . G . 282 . DP=314;DP4=302,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 82 . A . 283 . DP=313;DP4=296,0,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.013,0.069,0.1;VDB=0.0049 PL 0 MT 83 . T . 283 . DP=316;DP4=313,0,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0029,1.0,1.0;VDB=0.02 PL 0 MT 84 . A . 283 . DP=316;DP4=302,0,1,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-05,0.0044,1.0 PL 0 MT 85 . G . 283 . DP=314;DP4=314,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 86 . C . 283 . DP=318;DP4=297,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0198 PL 0 MT 87 . A . 283 . DP=324;DP4=316,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 88 . T . 283 . DP=326;DP4=325,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 89 . T . 283 . DP=328;DP4=313,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-08,1.0,0.064 PL 0 MT 90 . G . 283 . DP=329;DP4=326,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0193 PL 0 MT 91 . C . 283 . DP=328;DP4=310,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.2e-05,1.0,0.37 PL 0 MT 92 . G . 278 . DP=327;DP4=314,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.17,1.0,0.2;VDB=0.0237 PL 0 MT 93 . A . 283 . DP=328;DP4=310,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 94 . G . 283 . DP=327;DP4=327,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 95 . A . 283 . DP=323;DP4=308,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.8e-05,0.002,1.0 PL 0 MT 96 . C . 283 . DP=323;DP4=305,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.17,1.0,1.0 PL 0 MT 97 . G . 275 . DP=321;DP4=311,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 98 . C . 283 . DP=322;DP4=301,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0006 PL 0 MT 99 . T . 283 . DP=327;DP4=327,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 100 . G . 283 . DP=332;DP4=332,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 101 . G . 283 . DP=332;DP4=306,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 102 . A . 283 . DP=331;DP4=290,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.005 PL 0 MT 103 . G . 283 . DP=329;DP4=321,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0342 PL 0 MT 104 . C . 283 . DP=330;DP4=273,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0026,1.0,0.047;VDB=0.0003 PL 0 MT 105 . C . 283 . DP=338;DP4=302,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 106 . G . 283 . DP=343;DP4=314,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 107 . G . 283 . DP=344;DP4=300,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 108 . A . 283 . DP=347;DP4=305,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0302 PL 0 MT 109 . G . 283 . DP=348;DP4=344,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 110 . C . 283 . DP=341;DP4=279,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.4e-06,1.4e-08,1.0;VDB=0.0445 PL 0 MT 111 . A . 283 . DP=343;DP4=321,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0233 PL 0 MT 112 . C . 283 . DP=348;DP4=300,0,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.2e-08,7.4e-07,0.16;VDB=0.0169 PL 0 MT 113 . C . 283 . DP=350;DP4=307,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.8e-08,1.0,0.38;VDB=0.0252 PL 0 MT 114 . C . 283 . DP=351;DP4=307,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 115 . T . 283 . DP=351;DP4=346,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0025 PL 0 MT 116 . A . 283 . DP=352;DP4=317,0,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.3e-07,0.0073,0.45;VDB=0.0183 PL 0 MT 117 . T . 283 . DP=355;DP4=351,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0025 PL 0 MT 118 . G . 283 . DP=352;DP4=348,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0306 PL 0 MT 119 . T . 283 . DP=353;DP4=345,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.005,1.0,1.0;VDB=0.0335 PL 0 MT 120 . C . 283 . DP=354;DP4=331,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00033,1.0,0.14;VDB=0.044 PL 0 MT 121 . G . 283 . DP=356;DP4=311,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 122 . C . 283 . DP=353;DP4=304,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0064,1.0,0.29;VDB=0.0237 PL 0 MT 123 . A . 283 . DP=357;DP4=332,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0141 PL 0 MT 124 . G . 283 . DP=357;DP4=353,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 125 . T . 283 . DP=359;DP4=347,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0037,1.0,1.0;VDB=0.0302 PL 0 MT 126 . A . 283 . DP=360;DP4=327,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00072,0.0069,0.13;VDB=0.0215 PL 0 MT 127 . T . 283 . DP=358;DP4=355,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,9.7e-05,5e-08,0.14;VDB=0.0245 PL 0 MT 128 . C . 283 . DP=360;DP4=336,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0335 PL 0 MT 129 . T . 283 . DP=360;DP4=356,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00053,0.0013,1.0 PL 0 MT 130 . G . 283 . DP=357;DP4=355,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0141 PL 0 MT 131 . T . 283 . DP=360;DP4=351,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0057 PL 0 MT 132 . C . 283 . DP=359;DP4=338,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0367 PL 0 MT 133 . T . 283 . DP=358;DP4=353,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00063,0.0012,1.0;VDB=0.0033 PL 0 MT 134 . T . 283 . DP=357;DP4=326,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 135 . T . 283 . DP=356;DP4=322,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 136 . G . 283 . DP=358;DP4=353,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 137 . A . 283 . DP=358;DP4=317,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0044 PL 0 MT 138 . T . 283 . DP=358;DP4=355,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.025 PL 0 MT 139 . T . 283 . DP=360;DP4=328,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 140 . C . 283 . DP=356;DP4=338,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0065,2.6e-06,0.23;VDB=0.0367 PL 0 MT 141 . C . 283 . DP=360;DP4=321,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.012,1.0,0.13 PL 0 MT 142 . T . 283 . DP=362;DP4=357,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0342 PL 0 MT 143 . G . 283 . DP=360;DP4=353,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0017,1.0,0.18;VDB=0.0183 PL 0 MT 144 . C . 283 . DP=364;DP4=325,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0101 PL 0 MT 145 . C . 283 . DP=363;DP4=330,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0063 PL 0 MT 146 . T . 283 . DP=361;DP4=358,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0207 PL 0 MT 147 . C . 283 . DP=362;DP4=357,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 148 . A . 283 . DP=363;DP4=347,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0051 PL 0 MT 149 . T . 283 . DP=363;DP4=363,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 150 . C . 283 . DP=363;DP4=350,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0168 PL 0 MT 151 . C . 283 . DP=359;DP4=337,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.7e-05,1.0,0.077 PL 0 MT 152 . T . 283 . DP=355;DP4=352,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.028,1.0,1.0;VDB=0.0237 PL 0 MT 153 . A . 283 . DP=354;DP4=327,0,5,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.001,0.15,0.009;VDB=0.0115 PL 0 MT 154 . T . 283 . DP=353;DP4=349,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0051 PL 0 MT 155 . T . 283 . DP=357;DP4=343,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 156 . A . 283 . DP=357;DP4=337,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.021 PL 0 MT 157 . T . 283 . DP=356;DP4=355,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 158 . T . 283 . DP=351;DP4=333,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 159 . T . 283 . DP=343;DP4=321,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 160 . A . 283 . DP=337;DP4=313,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 161 . T . 283 . DP=336;DP4=334,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,7.6e-06,1.0,1.0 PL 0 MT 162 . C . 283 . DP=333;DP4=314,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0245 PL 0 MT 163 . G . 278 . DP=328;DP4=308,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.02 PL 0 MT 164 . C . 283 . DP=328;DP4=306,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0212 PL 0 MT 165 . A . 283 . DP=330;DP4=319,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0026,1.0,0.18;VDB=0.0167 PL 0 MT 166 . C . 283 . DP=332;DP4=308,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.6e-07,1.0,1.0;VDB=0.0134 PL 0 MT 167 . C . 283 . DP=330;DP4=310,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3e-05,1.0,1.0 PL 0 MT 168 . T . 283 . DP=329;DP4=329,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 169 . A . 283 . DP=332;DP4=314,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 170 . C . 283 . DP=327;DP4=307,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0013,1.0,1.0;VDB=0.0144 PL 0 MT 171 . G . 283 . DP=326;DP4=315,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 172 . T . 283 . DP=325;DP4=323,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0086 PL 0 MT 173 . T . 283 . DP=324;DP4=311,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 174 . C . 283 . DP=321;DP4=307,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.4e-06,1.0,0.32;VDB=0.0227 PL 0 MT 175 . A . 283 . DP=323;DP4=312,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0183 PL 0 MT 176 . A . 283 . DP=320;DP4=306,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00011,1.0,1.0 PL 0 MT 177 . T . 283 . DP=317;DP4=317,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 178 . A . 283 . DP=321;DP4=313,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 179 . T . 283 . DP=322;DP4=322,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 180 . T . 283 . DP=324;DP4=307,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 181 . A . 283 . DP=323;DP4=311,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 182 . C . 283 . DP=323;DP4=302,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.12,1.7e-06,1.0;VDB=0.016 PL 0 MT 183 . A . 283 . DP=326;DP4=318,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0096 PL 0 MT 184 . G . 283 . DP=328;DP4=325,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1e-05,1.0,0.37;VDB=0.0128 PL 0 MT 185 . G . 283 . DP=328;DP4=298,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.8e-06,1.0,1.0 PL 0 MT 186 . C . 283 . DP=324;DP4=295,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0238 PL 0 MT 187 . G . 283 . DP=325;DP4=305,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 188 . A . 283 . DP=326;DP4=301,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0032,1.0,1.0;VDB=0.0335 PL 0 MT 189 . A . 283 . DP=324;DP4=300,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 190 . C . 283 . DP=322;DP4=298,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.9e-06,7.9e-07,1.0;VDB=0.0192 PL 0 MT 191 . A . 283 . DP=324;DP4=313,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0009 PL 0 MT 192 . T . 283 . DP=321;DP4=320,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 193 . A . 283 . DP=329;DP4=307,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.003,1.0,0.11;VDB=0.0299 PL 0 MT 194 . C . 283 . DP=332;DP4=301,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3e-05,1.0,0.071;VDB=0.0429 PL 0 MT 195 . T . 283 . DP=329;DP4=327,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0121 PL 0 MT 196 . T . 283 . DP=326;DP4=308,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 197 . A . 283 . DP=328;DP4=311,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 198 . C . 283 . DP=329;DP4=310,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.3e-05,1.0,0.25;VDB=0.0187 PL 0 MT 199 . T . 283 . DP=329;DP4=327,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 200 . A . 283 . DP=333;DP4=321,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.022 PL 0 MT 201 . A . 283 . DP=331;DP4=315,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 202 . A . 283 . DP=332;DP4=311,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 203 . G . 283 . DP=327;DP4=324,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0021,1.0,0.093;VDB=0.0123 PL 0 MT 204 . T . 283 . DP=326;DP4=318,0,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.1e-05,9.1e-07,0.23;VDB=0.0025 PL 0 MT 205 . G . 283 . DP=329;DP4=326,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 206 . T . 283 . DP=331;DP4=322,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00013,2.1e-07,0.23;VDB=0.0044 PL 0 MT 207 . G . 283 . DP=333;DP4=330,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 208 . T . 283 . DP=332;DP4=332,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 209 . T . 283 . DP=332;DP4=318,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 210 . A . 283 . DP=332;DP4=319,0,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.9e-05,2.5e-06,1.0 PL 0 MT 211 . A . 283 . DP=334;DP4=324,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 212 . T . 283 . DP=335;DP4=335,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 213 . T . 283 . DP=335;DP4=325,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 214 . A . 283 . DP=338;DP4=330,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 215 . A . 283 . DP=333;DP4=323,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 216 . T . 283 . DP=331;DP4=331,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 217 . T . 283 . DP=332;DP4=324,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 218 . A . 283 . DP=332;DP4=327,0,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.1e-12,0.00014,0.25;VDB=0.0072 PL 0 MT 219 . A . 283 . DP=331;DP4=324,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 220 . T . 283 . DP=331;DP4=330,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.3e-07,0.00018,0.4 PL 0 MT 221 . G . 283 . DP=330;DP4=328,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 222 . C . 283 . DP=333;DP4=320,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0248 PL 0 MT 223 . T . 283 . DP=329;DP4=327,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0198 PL 0 MT 224 . T . 283 . DP=328;DP4=320,0,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 225 . G . 283 . DP=331;DP4=330,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 226 . T . 283 . DP=329;DP4=327,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 227 . A . 283 . DP=324;DP4=316,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 228 . G . 283 . DP=321;DP4=320,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2e-06,0.00026,1.0 PL 0 MT 229 . G . 283 . DP=318;DP4=304,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 230 . A . 283 . DP=320;DP4=311,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 231 . C . 283 . DP=319;DP4=309,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 232 . A . 283 . DP=317;DP4=309,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 233 . T . 283 . DP=319;DP4=319,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 234 . A . 283 . DP=314;DP4=308,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 235 . A . 283 . DP=314;DP4=307,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 236 . T . 283 . DP=318;DP4=317,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.1e-10,1.0,0.44 PL 0 MT 237 . A . 283 . DP=320;DP4=313,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00077,1.0,0.1;VDB=0.0168 PL 0 MT 238 . A . 283 . DP=318;DP4=313,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 239 . T . 283 . DP=316;DP4=316,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 240 . A . 283 . DP=315;DP4=310,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 241 . A . 283 . DP=314;DP4=309,0,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.036,1.0,1.0;VDB=0.016 PL 0 MT 242 . C . 283 . DP=314;DP4=305,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0183 PL 0 MT 243 . A . 283 . DP=316;DP4=313,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 244 . A . 283 . DP=320;DP4=314,0,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 245 . T . 283 . DP=316;DP4=316,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 246 . T . 283 . DP=319;DP4=311,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 247 . G . 283 . DP=323;DP4=322,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 248 . A . 283 . DP=327;DP4=320,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 249 . A . 283 . DP=328;DP4=318,0,1,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.7e-07,0.00026,1.0 PL 0 MT 250 . T . 283 . DP=326;DP4=324,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 251 . G . 283 . DP=323;DP4=323,0,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 252 . T . 283 . DP=324;DP4=322,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0217 PL 0 MT 253 . C . 283 . DP=328;DP4=322,0,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,5.7e-05,1.0,0.41;VDB=0.0158 PL 0 MT 254 . T . 283 . DP=324;DP4=324,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 255 . G . 283 . DP=319;DP4=318,0,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.7e-08,1.0,0.033 PL 0 MT 256 . C . 283 . DP=312;DP4=303,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 257 . A . 283 . DP=312;DP4=307,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 258 . C . 283 . DP=313;DP4=303,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 259 . A . 283 . DP=312;DP4=300,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0069 PL 0 MT 260 . G . 283 . DP=309;DP4=307,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 261 . C . 283 . DP=303;DP4=290,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 262 . C . 283 . DP=303;DP4=286,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 263 . A G 210 . DP=302;DP4=0,0,289,0;MQ=56;FQ=-282.0;AF1=1.0;AC1=2.0;VDB=0.0417 GT:PL:GQ 1/1:243,255,0:99 MT 264 . C . 283 . DP=309;DP4=290,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.018 PL 0 MT 265 . T . 283 . DP=311;DP4=310,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 266 . T . 283 . DP=311;DP4=298,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 267 . T . 283 . DP=310;DP4=293,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 268 . C . 283 . DP=308;DP4=298,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0214 PL 0 MT 269 . C . 283 . DP=307;DP4=293,0,2,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.4e-10,1.0,0.1;VDB=0.0183 PL 0 MT 270 . A . 283 . DP=306;DP4=300,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 271 . C . 283 . DP=307;DP4=298,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 272 . A . 283 . DP=308;DP4=300,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 273 . C . 283 . DP=306;DP4=296,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 274 . A . 283 . DP=303;DP4=294,0,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0016,0.05,1.0 PL 0 MT 275 . G . 283 . DP=308;DP4=306,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 276 . A . 283 . DP=308;DP4=289,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0253 PL 0 MT 277 . C . 283 . DP=307;DP4=291,0,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.04,1.0,0.18;VDB=0.0163 PL 0 MT 278 . A . 283 . DP=305;DP4=295,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0144 PL 0 MT 279 . T . 283 . DP=303;DP4=303,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 280 . C . 283 . DP=300;DP4=296,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 281 . A . 283 . DP=298;DP4=294,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 282 . T . 283 . DP=298;DP4=298,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 283 . A . 283 . DP=292;DP4=281,0,2,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.5e-06,0.094,0.37;VDB=0.0183 PL 0 MT 284 . A . 283 . DP=287;DP4=278,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 285 . C . 283 . DP=283;DP4=278,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0121 PL 0 MT 286 . A . 283 . DP=279;DP4=274,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 287 . A . 283 . DP=273;DP4=265,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 288 . A . 283 . DP=270;DP4=260,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 289 . A . 283 . DP=267;DP4=252,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0106 PL 0 MT 290 . A . 283 . DP=261;DP4=250,0,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0133 PL 0 MT 291 . A . 283 . DP=259;DP4=247,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 292 . T . 283 . DP=255;DP4=255,0,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 293 . T . 283 . DP=259;DP4=246,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 294 . T . 283 . DP=257;DP4=245,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 295 . C . 283 . DP=254;DP4=246,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 296 . C . 283 . DP=253;DP4=234,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 297 . A . 283 . DP=253;DP4=244,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0099 PL 0 MT 298 . C . 283 . DP=253;DP4=236,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0168 PL 0 MT 299 . C . 283 . DP=251;DP4=229,0,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0068,1.0,1.0 PL 0 MT 300 . A . 283 . DP=249;DP4=237,0,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 301 . A . 283 . DP=248;DP4=223,0,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-05,0.058,0.12;VDB=0.0369 PL 0 MT 302 . A . 283 . DP=248;DP4=221,0,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.3e-05,0.057,0.14;VDB=0.0227 PL 0 MT 302 . ACCCCCCC . 84.6 . DP=248;DP4=26,0,2,0;MQ=47;FQ=-88.5;AF1=0.0;AC1=0.0;PV4=1.0,1.0,1.0,0.21;INDEL;VDB=0.0435 PL 0 MT 303 . C . 283 . DP=244;DP4=205,0,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 304 . C . 283 . DP=242;DP4=197,0,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0027,0.0048,1.0;VDB=0.01 PL 0 MT 304 . C . 85.5 . DP=242;DP4=59,0,1,0;MQ=53;FQ=-197.0;AF1=0.0;AC1=0.0;PV4=1.0,0.22,1.0,1.0;INDEL;VDB=0.0435 PL 0 MT 305 . C . 283 . DP=250;DP4=193,0,2,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00014,1.0,0.3;VDB=0.0158 PL 0 MT 306 . C . 283 . DP=252;DP4=194,0,2,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00023,1.0,0.11;VDB=0.0111 PL 0 MT 307 . C . 283 . DP=252;DP4=190,0,3,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2e-06,0.0019,0.34;VDB=0.0284 PL 0 MT 308 . C . 283 . DP=255;DP4=175,0,2,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.9e-06,1.0,0.11;VDB=0.009 PL 0 MT 309 . C . 283 . DP=257;DP4=176,0,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0001 PL 0 MT 310 . T . 283 . DP=260;DP4=204,0,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0268 PL 0 MT 311 . C . 105 . DP=265;DP4=25,0,0,0;MQ=53;FQ=-102.0;AF1=0.0;AC1=0.0;VDB=0.0195 PL 0 MT 312 . C . 102 . DP=271;DP4=23,1,0,0;MQ=58;FQ=-99.0;AF1=0.0;AC1=0.0 PL 0 MT 313 . C . 132 . DP=282;DP4=33,1,0,0;MQ=59;FQ=-129.0;AF1=0.0;AC1=0.0 PL 0 MT 314 . C . 138 . DP=280;DP4=35,1,0,0;MQ=58;FQ=-135.0;AF1=0.0;AC1=0.0 PL 0 MT 315 . C . 147 . DP=281;DP4=38,1,0,0;MQ=58;FQ=-144.0;AF1=0.0;AC1=0.0 PL 0 MT 316 . G . 255 . DP=270;DP4=199,1,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0058,0.075,1.0;VDB=0.0233 PL 0 MT 317 . C . 283 . DP=278;DP4=221,2,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0227 PL 0 MT 318 . T . 283 . DP=286;DP4=267,2,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0367 PL 0 MT 319 . T . 283 . DP=287;DP4=236,2,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,5.5e-08,0.011,0.33;VDB=0.0449 PL 0 MT 320 . C . 283 . DP=288;DP4=263,3,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0233 PL 0 MT 321 . T . 283 . DP=289;DP4=270,3,1,1;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.029,0.00028,0.12,0.0089;VDB=0.0302 PL 0 MT 322 . G . 283 . DP=290;DP4=258,4,4,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.5e-05,1.4e-06,1.0;VDB=0.0093 PL 0 MT 323 . G . 283 . DP=291;DP4=212,5,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0081 PL 0 MT 324 . C . 283 . DP=292;DP4=231,5,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0031,1.0,0.26;VDB=0.0099 PL 0 MT 325 . C . 283 . DP=295;DP4=236,10,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.7e-06,2.3e-05,0.47;VDB=0.0128 PL 0 MT 326 . A . 283 . DP=298;DP4=257,14,3,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0039,1.0,1.0;VDB=0.0449 PL 0 MT 327 . C . 283 . DP=307;DP4=238,18,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00016,0.077,0.41;VDB=0.0302 PL 0 MT 328 . A . 283 . DP=311;DP4=258,19,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.023,1.0,1.0;VDB=0.0115 PL 0 MT 329 . G . 283 . DP=316;DP4=279,16,3,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00045,0.017,1.0;VDB=0.0335 PL 0 MT 330 . C . 283 . DP=322;DP4=237,22,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0115 PL 0 MT 331 . A . 283 . DP=332;DP4=268,25,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0302 PL 0 MT 332 . C . 283 . DP=337;DP4=257,28,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00057,0.00021,0.22;VDB=0.0104 PL 0 MT 333 . T . 283 . DP=339;DP4=305,24,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0005 PL 0 MT 334 . T . 283 . DP=349;DP4=275,31,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0106 PL 0 MT 335 . A . 283 . DP=356;DP4=283,32,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.037,0.014,1.0;VDB=0.0057 PL 0 MT 336 . A . 283 . DP=361;DP4=279,34,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 337 . A . 283 . DP=359;DP4=278,40,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.16,1.0,0.093;VDB=0.0022 PL 0 MT 338 . C . 283 . DP=359;DP4=267,41,3,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.1e-06,1.0,1.0;VDB=0.0302 PL 0 MT 339 . A . 283 . DP=365;DP4=295,45,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0242 PL 0 MT 340 . C . 283 . DP=372;DP4=284,51,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00047,0.025,1.0;VDB=0.0169 PL 0 MT 341 . A . 283 . DP=378;DP4=299,54,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0325 PL 0 MT 342 . T . 283 . DP=385;DP4=321,47,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0324 PL 0 MT 343 . C . 283 . DP=387;DP4=298,62,2,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,9.5e-06,1.0,0.48;VDB=0.0169 PL 0 MT 344 . T . 283 . DP=392;DP4=319,49,1,1;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.25,6.8e-05,0.16,1.0;VDB=0.0394 PL 0 MT 345 . C . 283 . DP=403;DP4=314,70,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 346 . T . 283 . DP=412;DP4=335,70,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0124 PL 0 MT 347 . G . 283 . DP=418;DP4=290,71,5,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.59,6.4e-09,0.002,1.0;VDB=0.0335 PL 0 MT 348 . C . 283 . DP=429;DP4=300,80,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0017,1.0,0.19 PL 0 MT 349 . C . 283 . DP=441;DP4=312,87,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.7e-05,0.043,1.0;VDB=0.0396 PL 0 MT 350 . A . 283 . DP=451;DP4=333,83,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0115 PL 0 MT 351 . A . 283 . DP=456;DP4=322,89,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0445 PL 0 MT 352 . A . 283 . DP=458;DP4=321,98,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0245 PL 0 MT 353 . C . 283 . DP=467;DP4=317,100,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0449 PL 0 MT 354 . C . 283 . DP=481;DP4=328,104,1,1;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.43,0.00091,0.012,1.0;VDB=0.0447 PL 0 MT 355 . C . 283 . DP=483;DP4=339,104,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 356 . C . 283 . DP=494;DP4=340,122,1,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.023,1.0,0.026;VDB=0.0166 PL 0 MT 357 . A . 283 . DP=500;DP4=353,115,2,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.4e-06,1.0,1.0;VDB=0.0073 PL 0 MT 358 . A . 283 . DP=503;DP4=357,115,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0063 PL 0 MT 359 . A . 283 . DP=507;DP4=348,119,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0146 PL 0 MT 360 . A . 283 . DP=515;DP4=355,125,1,1;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.45,2.4e-06,0.29,0.0068;VDB=0.009 PL 0 MT 361 . A . 283 . DP=516;DP4=359,134,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.003 PL 0 MT 362 . C . 283 . DP=522;DP4=361,138,1,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,5.4e-06,0.078,1.0 PL 0 MT 363 . A . 283 . DP=528;DP4=380,128,1,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.2e-05,0.072,0.067;VDB=0.0185 PL 0 MT 364 . A . 283 . DP=540;DP4=370,143,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 365 . A . 283 . DP=552;DP4=379,152,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0112 PL 0 MT 366 . G . 283 . DP=553;DP4=385,146,1,2;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.19,5.9e-09,0.12,1.0;VDB=0.0429 PL 0 MT 367 . A . 283 . DP=560;DP4=386,146,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 368 . A . 283 . DP=566;DP4=388,156,2,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0066,0.32,0.38;VDB=0.0367 PL 0 MT 369 . C . 283 . DP=573;DP4=376,150,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0009 PL 0 MT 370 . C . 283 . DP=578;DP4=390,153,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 371 . C . 283 . DP=587;DP4=395,176,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.068,0.091,1.0;VDB=0.0369 PL 0 MT 372 . T . 283 . DP=597;DP4=415,162,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0063 PL 0 MT 373 . A . 283 . DP=607;DP4=413,169,2,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00013,1.0,1.0;VDB=0.0168 PL 0 MT 374 . A . 283 . DP=612;DP4=414,185,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0165 PL 0 MT 375 . C . 283 . DP=620;DP4=406,186,7,4;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.75,1.0,0.49,1.0;VDB=0.0394 PL 0 MT 376 . A . 283 . DP=631;DP4=423,191,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0302 PL 0 MT 377 . C . 283 . DP=641;DP4=421,192,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.5e-06,1.0,0.4;VDB=0.0342 PL 0 MT 378 . C . 283 . DP=656;DP4=432,204,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.12,0.093,1.0;VDB=0.0144 PL 0 MT 379 . A . 283 . DP=671;DP4=452,207,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0335 PL 0 MT 380 . G . 283 . DP=676;DP4=458,206,0,2;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.097,7.4e-09,0.0067,0.052;VDB=0.0193 PL 0 MT 381 . C . 283 . DP=686;DP4=456,209,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 382 . C . 283 . DP=691;DP4=462,216,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.9e-06,0.091,1.0 PL 0 MT 383 . T . 283 . DP=697;DP4=474,215,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-08,1.0,0.33;VDB=0.0111 PL 0 MT 384 . A . 283 . DP=699;DP4=467,221,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,7.9e-07,1.0,0.032 PL 0 MT 385 . A . 283 . DP=702;DP4=465,221,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.071,1.0,0.23;VDB=0.027 PL 0 MT 386 . C . 283 . DP=707;DP4=464,223,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.022,1.0,0.064;VDB=0.0245 PL 0 MT 387 . C . 283 . DP=713;DP4=468,230,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2e-09,1.0,1.0 PL 0 MT 388 . A . 283 . DP=719;DP4=477,234,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 389 . G . 283 . DP=725;DP4=488,235,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 390 . A . 283 . DP=727;DP4=471,239,2,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,8.2e-09,0.34,1.0;VDB=0.0165 PL 0 MT 391 . T . 283 . DP=736;DP4=490,238,2,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.7e-07,0.34,1.0;VDB=0.0193 PL 0 MT 392 . T . 283 . DP=744;DP4=488,241,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.4e-09,1.0,1.0 PL 0 MT 393 . T . 283 . DP=746;DP4=486,241,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 394 . C . 283 . DP=750;DP4=496,250,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0202 PL 0 MT 395 . A . 283 . DP=746;DP4=492,247,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 396 . A . 283 . DP=752;DP4=480,252,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 397 . A . 283 . DP=755;DP4=479,258,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.8e-06,0.096,1.0;VDB=0.0215 PL 0 MT 398 . T . 283 . DP=759;DP4=495,253,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 399 . T . 283 . DP=763;DP4=488,256,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.9e-07,0.017,0.11 PL 0 MT 400 . T . 283 . DP=764;DP4=485,262,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0138 PL 0 MT 401 . T . 283 . DP=772;DP4=483,271,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 402 . A . 283 . DP=767;DP4=477,275,0,1;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,2.2e-06,0.093,1.0;VDB=0.019 PL 0 MT 403 . T . 283 . DP=767;DP4=484,268,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 404 . C . 283 . DP=771;DP4=478,284,0,1;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,4e-06,0.092,1.0 PL 0 MT 405 . T . 283 . DP=766;DP4=479,272,1,1;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.2e-21,1.0,0.19;VDB=0.0227 PL 0 MT 406 . T . 283 . DP=770;DP4=470,281,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 407 . T . 283 . DP=764;DP4=459,283,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 408 . T . 283 . DP=762;DP4=454,297,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 409 . G . 283 . DP=768;DP4=466,292,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 410 . G . 283 . DP=766;DP4=447,286,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0261 PL 0 MT 411 . C . 283 . DP=767;DP4=449,292,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 412 . G . 283 . DP=771;DP4=459,287,0,1;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.39,0.0013,1.0,0.029;VDB=0.0185 PL 0 MT 413 . G . 283 . DP=776;DP4=451,285,0,2;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,0.0059,0.025,1.0;VDB=0.0394 PL 0 MT 414 . T . 283 . DP=781;DP4=470,297,0,1;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.39,2.6e-05,1.0,0.061;VDB=0.0429 PL 0 MT 415 . A . 283 . DP=787;DP4=462,310,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 416 . T . 283 . DP=788;DP4=473,306,1,1;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,5.1e-12,0.31,1.0;VDB=0.0205 PL 0 MT 417 . G . 283 . DP=782;DP4=471,290,0,1;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.38,3.1e-08,0.079,1.0;VDB=0.0366 PL 0 MT 418 . C . 283 . DP=785;DP4=457,310,1,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.5e-08,1.0,0.013;VDB=0.0227 PL 0 MT 419 . A . 283 . DP=785;DP4=462,309,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0447 PL 0 MT 420 . C . 283 . DP=787;DP4=450,313,3,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.27,1.3e-11,0.11,1.0;VDB=0.0268 PL 0 MT 421 . T . 283 . DP=785;DP4=470,296,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 422 . T . 283 . DP=786;DP4=457,302,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 423 . T . 283 . DP=782;DP4=453,298,1,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.3e-08,0.073,1.0;VDB=0.0253 PL 0 MT 424 . T . 283 . DP=780;DP4=453,299,0,2;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.16,1.3e-11,1.0,0.043;VDB=0.021 PL 0 MT 425 . A . 283 . DP=781;DP4=449,296,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 426 . A . 283 . DP=782;DP4=455,310,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0067 PL 0 MT 427 . C . 283 . DP=778;DP4=447,311,3,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.27,2.2e-13,0.0044,1.0;VDB=0.0342 PL 0 MT 428 . A . 283 . DP=785;DP4=460,311,2,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.52,0.0039,0.014,1.0;VDB=0.0013 PL 0 MT 429 . G . 283 . DP=782;DP4=468,290,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 430 . T . 283 . DP=783;DP4=468,279,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0417 PL 0 MT 431 . C . 283 . DP=783;DP4=456,308,3,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.28,2.7e-07,0.25,0.48;VDB=0.0417 PL 0 MT 432 . A . 283 . DP=778;DP4=458,293,0,1;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.39,0.0053,1.0,0.074;VDB=0.0417 PL 0 MT 433 . C . 283 . DP=778;DP4=438,276,2,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.53,6.9e-09,0.011,1.0;VDB=0.0088 PL 0 MT 434 . C . 283 . DP=779;DP4=442,285,3,1;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.7e-16,1.0,0.0067;VDB=0.0367 PL 0 MT 435 . C . 283 . DP=775;DP4=447,282,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 436 . C . 283 . DP=773;DP4=436,286,3,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.28,1.7e-10,0.06,0.39;VDB=0.0233 PL 0 MT 437 . C . 283 . DP=773;DP4=444,285,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 438 . C . 283 . DP=772;DP4=449,298,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 439 . A . 283 . DP=773;DP4=448,284,1,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00018,1.0,1.0;VDB=0.0253 PL 0 MT 440 . A . 283 . DP=772;DP4=449,300,0,2;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.16,0.0016,1.0,0.27;VDB=0.0324 PL 0 MT 441 . C . 283 . DP=770;DP4=444,299,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 442 . T . 283 . DP=773;DP4=473,275,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0373 PL 0 MT 443 . A . 283 . DP=772;DP4=458,273,2,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.53,3.5e-09,0.18,0.012;VDB=0.0169 PL 0 MT 444 . A . 283 . DP=758;DP4=451,284,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0417 PL 0 MT 445 . C . 283 . DP=765;DP4=454,287,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00013,1.0,1.0;VDB=0.0124 PL 0 MT 446 . A . 283 . DP=763;DP4=465,283,0,1;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.38,1.0,1.0,1.0;VDB=0.0233 PL 0 MT 447 . C . 283 . DP=761;DP4=444,291,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.014,0.023,1.0;VDB=0.0121 PL 0 MT 448 . A . 283 . DP=768;DP4=459,293,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0033,0.025,1.0;VDB=0.0445 PL 0 MT 449 . T . 283 . DP=765;DP4=467,251,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0183 PL 0 MT 450 . T . 283 . DP=758;DP4=446,248,1,1;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00099,0.031,0.3;VDB=0.0242 PL 0 MT 451 . A . 283 . DP=766;DP4=458,292,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0166 PL 0 MT 452 . T . 283 . DP=761;DP4=467,250,0,1;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.35,6.8e-05,0.02,0.13 PL 0 MT 453 . T . 283 . DP=768;DP4=447,255,0,1;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.36,7e-06,1.0,0.074;VDB=0.0195 PL 0 MT 454 . T . 283 . DP=757;DP4=440,257,0,1;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,2.3e-05,1.0,1.0;VDB=0.0227 PL 0 MT 455 . T . 283 . DP=759;DP4=436,201,0,3;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.032,3.9e-07,0.22,0.48;VDB=0.0057 PL 0 MT 456 . C . 283 . DP=765;DP4=435,252,4,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.3,1.5e-10,0.0092,0.05;VDB=0.0018 PL 0 MT 457 . C . 283 . DP=765;DP4=437,252,2,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.54,8.3e-10,1.0,0.0021;VDB=0.0089 PL 0 MT 458 . C . 283 . DP=765;DP4=437,251,2,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.54,6.9e-06,1.0,1.0;VDB=0.0435 PL 0 MT 459 . C . 283 . DP=761;DP4=444,290,1,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00014,0.00041,0.49;VDB=0.0062 PL 0 MT 460 . T . 283 . DP=759;DP4=465,242,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0002 PL 0 MT 461 . C . 283 . DP=761;DP4=452,250,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0069 PL 0 MT 462 . C . 283 . DP=763;DP4=441,252,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 463 . C . 283 . DP=762;DP4=437,283,3,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.28,6.3e-06,0.16,0.39;VDB=0.0363 PL 0 MT 464 . A . 283 . DP=763;DP4=444,262,0,1;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,0.08,1.0,1.0;VDB=0.0367 PL 0 MT 465 . C . 283 . DP=762;DP4=453,290,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0215 PL 0 MT 466 . T . 283 . DP=758;DP4=465,244,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0115 PL 0 MT 467 . C . 283 . DP=757;DP4=460,246,0,1;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.35,2.1e-06,1.0,1.0;VDB=0.0343 PL 0 MT 468 . C . 283 . DP=754;DP4=440,251,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0175 PL 0 MT 469 . C . 283 . DP=755;DP4=445,293,1,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00029,0.0029,0.27;VDB=0.0096 PL 0 MT 470 . A . 283 . DP=762;DP4=446,296,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.02 PL 0 MT 471 . T . 283 . DP=759;DP4=463,256,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.36,0.001,0.0016,1.0;VDB=0.0232 PL 0 MT 472 . A . 283 . DP=757;DP4=448,287,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0027,0.002,0.16;VDB=0.0447 PL 0 MT 473 . C . 283 . DP=757;DP4=451,293,1,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.3e-07,0.033,1.0;VDB=0.0193 PL 0 MT 474 . T . 283 . DP=763;DP4=468,251,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0134 PL 0 MT 475 . A . 283 . DP=768;DP4=460,285,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.38,0.0041,0.0013,1.0;VDB=0.0268 PL 0 MT 476 . C . 283 . DP=768;DP4=462,292,0,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,1.3e-06,1.1e-05,1.0;VDB=0.02 PL 0 MT 477 . T . 283 . DP=772;DP4=474,257,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.35,0.00014,1.0,0.11;VDB=0.0242 PL 0 MT 478 . A . 283 . DP=772;DP4=462,253,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.54,8.5e-10,0.015,0.19;VDB=0.0054 PL 0 MT 479 . A . 283 . DP=773;DP4=458,298,1,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0012,1.0,0.038;VDB=0.0281 PL 0 MT 480 . T . 283 . DP=783;DP4=471,231,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0025 PL 0 MT 481 . C . 283 . DP=784;DP4=458,309,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.048,1.0,0.13;VDB=0.0217 PL 0 MT 482 . T . 283 . DP=783;DP4=460,259,2,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.62,0.0001,1.0,1.0;VDB=0.0335 PL 0 MT 483 . C . 283 . DP=791;DP4=460,322,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0077 PL 0 MT 484 . A . 283 . DP=792;DP4=457,324,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0225 PL 0 MT 485 . T . 283 . DP=799;DP4=467,258,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.36,0.064,1.0,1.0;VDB=0.0169 PL 0 MT 486 . C . 283 . DP=799;DP4=456,333,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 487 . A . 283 . DP=803;DP4=458,267,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 488 . A . 283 . DP=798;DP4=447,334,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.064,0.00075,1.0;VDB=0.0207 PL 0 MT 489 . T . 283 . DP=803;DP4=468,264,0,3;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.048,4.9e-06,0.042,0.021;VDB=0.0044 PL 0 MT 490 . A . 283 . DP=797;DP4=451,317,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.007,0.00036,0.4;VDB=0.0044 PL 0 MT 491 . C . 283 . DP=791;DP4=448,324,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 492 . A . 283 . DP=797;DP4=456,298,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.4,0.00027,0.0004,1.0;VDB=0.0156 PL 0 MT 493 . A . 283 . DP=798;DP4=457,282,0,3;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.056,0.00012,0.064,0.3;VDB=0.0115 PL 0 MT 494 . C . 283 . DP=804;DP4=444,277,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0156 PL 0 MT 495 . C . 283 . DP=814;DP4=460,288,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2e-05,1.0,0.27;VDB=0.0174 PL 0 MT 496 . C . 283 . DP=821;DP4=448,292,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.52,2e-06,1.0,0.11;VDB=0.0372 PL 0 MT 497 . C . 283 . DP=825;DP4=457,296,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.52,0.048,1.0,1.0;VDB=0.0207 PL 0 MT 498 . C . 283 . DP=828;DP4=460,304,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0253 PL 0 MT 499 . G . 283 . DP=831;DP4=469,285,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0037,1.0,0.015;VDB=0.0394 PL 0 MT 500 . C . 283 . DP=843;DP4=477,292,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.019 PL 0 MT 501 . C . 283 . DP=846;DP4=477,302,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 502 . C . 283 . DP=843;DP4=475,338,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0198 PL 0 MT 503 . A . 283 . DP=843;DP4=486,336,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0076 PL 0 MT 504 . T . 283 . DP=844;DP4=501,279,1,3;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.14,4.7e-06,3.5e-06,1.0;VDB=0.0115 PL 0 MT 505 . C . 283 . DP=836;DP4=481,308,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0119 PL 0 MT 506 . C . 283 . DP=835;DP4=479,332,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.5e-05,1.0,0.021;VDB=0.0089 PL 0 MT 507 . T . 283 . DP=841;DP4=498,307,1,3;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.16,1.7e-08,0.16,0.086;VDB=0.0324 PL 0 MT 508 . A . 283 . DP=847;DP4=483,322,2,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.7e-05,0.082,1.0;VDB=0.044 PL 0 MT 509 . C . 283 . DP=854;DP4=471,319,4,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,1.2e-09,0.0011,0.28;VDB=0.0394 PL 0 MT 510 . C . 283 . DP=853;DP4=463,322,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.4e-06,1.0,0.045;VDB=0.018 PL 0 MT 511 . C . 283 . DP=855;DP4=470,358,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.7e-05,0.0014,0.053;VDB=0.0146 PL 0 MT 512 . A . 283 . DP=857;DP4=488,355,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.42,0.00018,0.0016,1.0;VDB=0.0166 PL 0 MT 513 . G . 283 . DP=857;DP4=496,312,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.29,2.2e-11,0.00027,1.0;VDB=0.0417 PL 0 MT 514 . C . 283 . DP=851;DP4=471,346,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.18,0.011,1.0 PL 0 MT 515 . A . 283 . DP=843;DP4=479,344,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0019,1.0,0.017;VDB=0.0445 PL 0 MT 516 . C . 283 . DP=839;DP4=472,342,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 517 . A . 283 . DP=850;DP4=475,350,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0367 PL 0 MT 518 . C . 283 . DP=841;DP4=457,349,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.43,0.00018,1.0,0.063;VDB=0.0155 PL 0 MT 519 . A . 283 . DP=839;DP4=470,343,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0394 PL 0 MT 520 . C . 283 . DP=833;DP4=457,341,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,1e-06,0.02,0.46;VDB=0.0145 PL 0 MT 521 . A . 283 . DP=831;DP4=463,335,1,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0021,1.0,0.0088;VDB=0.0394 PL 0 MT 522 . C . 283 . DP=835;DP4=462,345,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0118 PL 0 MT 523 . A . 283 . DP=833;DP4=463,329,0,4;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.03,5.1e-08,0.11,0.026;VDB=0.0335 PL 0 MT 524 . C . 283 . DP=828;DP4=454,324,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 525 . C . 283 . DP=828;DP4=448,333,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0101 PL 0 MT 526 . G . 283 . DP=829;DP4=449,327,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0206 PL 0 MT 527 . C . 283 . DP=832;DP4=458,353,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,4.6e-09,0.089,0.31;VDB=0.0074 PL 0 MT 528 . T . 283 . DP=828;DP4=470,345,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.42,0.017,1.0,1.0;VDB=0.0417 PL 0 MT 529 . G . 283 . DP=819;DP4=465,322,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.41,9.5e-07,0.00067,1.0;VDB=0.0074 PL 0 MT 530 . C . 283 . DP=822;DP4=451,348,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0074 PL 0 MT 531 . T . 283 . DP=828;DP4=471,331,1,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.57,2e-10,0.065,1.0;VDB=0.0093 PL 0 MT 532 . A . 283 . DP=830;DP4=433,335,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,5e-06,1.0,0.15;VDB=0.02 PL 0 MT 533 . A . 283 . DP=825;DP4=431,343,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,5.8e-06,0.017,1.0;VDB=0.0374 PL 0 MT 534 . C . 283 . DP=828;DP4=452,322,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 535 . C . 283 . DP=827;DP4=441,333,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00017,1.1e-06,1.0;VDB=0.0253 PL 0 MT 536 . C . 283 . DP=830;DP4=446,328,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.004 PL 0 MT 537 . C . 283 . DP=830;DP4=436,361,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0212 PL 0 MT 538 . A . 283 . DP=830;DP4=461,358,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0245 PL 0 MT 539 . T . 283 . DP=832;DP4=474,330,1,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.57,8.2e-07,1.5e-05,1.0;VDB=0.0445 PL 0 MT 540 . A . 283 . DP=834;DP4=456,327,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.27,2.4e-05,1.0,0.078;VDB=0.0445 PL 0 MT 541 . C . 283 . DP=828;DP4=442,326,2,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,0.00044,0.01,0.18;VDB=0.0435 PL 0 MT 542 . C . 283 . DP=832;DP4=437,327,4,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.4,1.7e-12,8e-07,1.0;VDB=0.0447 PL 0 MT 543 . C . 283 . DP=829;DP4=448,323,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.27,5.3e-09,1.0,0.3;VDB=0.0429 PL 0 MT 544 . C . 283 . DP=833;DP4=459,326,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.27,4e-07,1.0;VDB=0.0153 PL 0 MT 545 . G . 283 . DP=831;DP4=453,338,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0373 PL 0 MT 546 . A . 283 . DP=831;DP4=460,323,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0354 PL 0 MT 547 . A . 283 . DP=826;DP4=461,331,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.42,2.8e-05,0.00042,0.027;VDB=0.0268 PL 0 MT 548 . C . 283 . DP=827;DP4=460,317,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 549 . C . 283 . DP=839;DP4=461,350,3,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.26,2e-08,1.0,0.01;VDB=0.0051 PL 0 MT 550 . A . 283 . DP=840;DP4=469,331,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0417 PL 0 MT 551 . A . 283 . DP=837;DP4=468,342,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.017,1.0,1.0;VDB=0.0367 PL 0 MT 552 . C . 283 . DP=834;DP4=457,322,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,3.6e-05,1.0,0.34;VDB=0.0183 PL 0 MT 553 . C . 283 . DP=838;DP4=459,345,4,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.14,2.1e-13,0.00082,1.0;VDB=0.0367 PL 0 MT 554 . A . 283 . DP=842;DP4=482,321,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00051,0.17,0.24;VDB=0.0123 PL 0 MT 555 . A . 283 . DP=842;DP4=478,326,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.41,3.8e-08,0.00018,1.0;VDB=0.0165 PL 0 MT 556 . A . 283 . DP=843;DP4=473,331,0,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.17,5.5e-08,1.0,0.31;VDB=0.0429 PL 0 MT 557 . C . 283 . DP=843;DP4=463,321,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.7e-05,1.0,1.0;VDB=0.0435 PL 0 MT 558 . C . 283 . DP=839;DP4=462,321,2,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.4e-12,5.7e-15,1.0;VDB=0.0447 PL 0 MT 559 . C . 283 . DP=827;DP4=454,315,4,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,6.5e-16,0.007,0.31;VDB=0.0073 PL 0 MT 560 . C . 283 . DP=816;DP4=450,334,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.9e-05,9.4e-08,1.0 PL 0 MT 561 . A . 283 . DP=821;DP4=470,317,0,1;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.4,0.049,1.0,1.0;VDB=0.0074 PL 0 MT 562 . A . 283 . DP=827;DP4=457,322,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0002 PL 0 MT 563 . A . 283 . DP=834;DP4=457,340,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 564 . G . 283 . DP=828;DP4=478,331,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.011,1.0,1.0;VDB=0.0025 PL 0 MT 565 . A . 283 . DP=824;DP4=452,331,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.51,0.00016,0.0075,0.14;VDB=0.0429 PL 0 MT 566 . C . 283 . DP=827;DP4=451,332,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00033,2.7e-05,1.0;VDB=0.0123 PL 0 MT 567 . A . 283 . DP=827;DP4=472,315,0,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.4,0.29,1.0,1.0;VDB=0.0367 PL 0 MT 568 . C . 283 . DP=827;DP4=449,310,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0116 PL 0 MT 569 . C . 283 . DP=826;DP4=444,307,6,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.086,3.2e-15,2.2e-08,1.0;VDB=0.0141 PL 0 MT 570 . C . 283 . DP=819;DP4=436,301,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.52,0.0003,1.0,1.0;VDB=0.0241 PL 0 MT 571 . C . 283 . DP=822;DP4=459,302,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0025 PL 0 MT 572 . C . 283 . DP=822;DP4=459,305,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 573 . C . 283 . DP=823;DP4=466,317,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0133 PL 0 MT 574 . A . 283 . DP=826;DP4=488,315,1,2;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.56,4.9e-06,0.019,1.0;VDB=0.044 PL 0 MT 575 . C . 283 . DP=827;DP4=479,314,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0128 PL 0 MT 576 . A . 283 . DP=831;DP4=495,313,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0028,1.6e-05,0.36;VDB=0.0169 PL 0 MT 577 . G . 283 . DP=830;DP4=516,300,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0195 PL 0 MT 578 . T . 283 . DP=837;DP4=519,299,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0302 PL 0 MT 579 . T . 283 . DP=833;DP4=495,295,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 580 . T . 283 . DP=839;DP4=497,302,1,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.3e-06,0.00033,0.061;VDB=0.0042 PL 0 MT 581 . A . 283 . DP=848;DP4=509,313,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8e-05,1.0,0.29;VDB=0.0088 PL 0 MT 582 . T . 283 . DP=848;DP4=531,308,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8e-07,1.0,0.33;VDB=0.0184 PL 0 MT 583 . G . 283 . DP=842;DP4=524,304,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.5e-07,2.9e-06,0.24 PL 0 MT 584 . T . 283 . DP=848;DP4=530,310,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 585 . A . 283 . DP=844;DP4=499,317,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.021 PL 0 MT 586 . G . 283 . DP=835;DP4=516,304,0,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,4.9e-06,1.0,0.035;VDB=0.044 PL 0 MT 587 . C . 283 . DP=847;DP4=503,324,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 588 . T . 283 . DP=847;DP4=521,309,0,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,2.3e-05,2.5e-12,1.0;VDB=0.0051 PL 0 MT 589 . T . 283 . DP=846;DP4=502,310,0,2;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,2.1e-14,0.0001,0.29;VDB=0.0227 PL 0 MT 590 . A . 283 . DP=843;DP4=504,320,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.02 PL 0 MT 591 . C . 283 . DP=847;DP4=497,316,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.52,1.3e-11,0.00017,0.43;VDB=0.0263 PL 0 MT 592 . C . 283 . DP=853;DP4=492,335,3,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.65,1.8e-12,1.2e-33,1.0;VDB=0.0169 PL 0 MT 593 . T . 283 . DP=853;DP4=511,317,3,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.29,6e-10,0.005,0.47;VDB=0.0073 PL 0 MT 594 . C . 283 . DP=853;DP4=507,323,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0017,1.0,1.0;VDB=0.0121 PL 0 MT 595 . C . 283 . DP=855;DP4=495,333,1,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.9e-14,0.00031,0.29;VDB=0.0215 PL 0 MT 596 . T . 283 . DP=859;DP4=513,329,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0032 PL 0 MT 597 . C . 283 . DP=861;DP4=509,338,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0195 PL 0 MT 598 . A . 283 . DP=853;DP4=513,318,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 599 . A . 283 . DP=845;DP4=507,310,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.7e-06,1.0,0.021;VDB=0.0 PL 0 MT 600 . A . 283 . DP=847;DP4=509,316,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.023,1.0,0.036;VDB=0.0101 PL 0 MT 601 . G . 283 . DP=846;DP4=525,302,0,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,1.6e-07,1.1e-06,1.0;VDB=0.0242 PL 0 MT 602 . C . 283 . DP=847;DP4=508,317,3,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.29,7.8e-13,0.0041,0.07;VDB=0.0013 PL 0 MT 603 . A . 283 . DP=861;DP4=534,303,2,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.54,7.4e-14,0.00014,0.5;VDB=0.0215 PL 0 MT 604 . A . 283 . DP=866;DP4=528,319,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,7.1e-07,1.0,0.036;VDB=0.0205 PL 0 MT 605 . T . 283 . DP=873;DP4=547,316,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0099 PL 0 MT 606 . A . 283 . DP=884;DP4=540,326,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.18,1.0,1.0;VDB=0.0356 PL 0 MT 607 . C . 283 . DP=880;DP4=540,323,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0086 PL 0 MT 608 . A . 283 . DP=883;DP4=542,324,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,3.8e-06,1.0,1.0;VDB=0.0374 PL 0 MT 609 . C . 283 . DP=890;DP4=548,326,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0163 PL 0 MT 610 . T . 283 . DP=900;DP4=572,322,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0242 PL 0 MT 611 . G . 283 . DP=905;DP4=577,314,0,1;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.35,0.04,1.0,1.0;VDB=0.0394 PL 0 MT 612 . A . 283 . DP=904;DP4=568,314,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0049,1.0,0.18 PL 0 MT 613 . A . 283 . DP=913;DP4=571,316,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00039,1.0,0.49;VDB=0.0064 PL 0 MT 614 . A . 283 . DP=918;DP4=571,314,1,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0029,1.0,1.0;VDB=0.018 PL 0 MT 615 . A . 283 . DP=924;DP4=570,328,0,0;MQ=59;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0144 PL 0 MT 616 . T . 283 . DP=926;DP4=593,318,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0324 PL 0 MT 617 . G . 283 . DP=926;DP4=592,325,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 618 . T . 283 . DP=932;DP4=591,320,0,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.044 PL 0 MT 619 . T . 283 . DP=936;DP4=586,317,0,2;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.12,9.1e-09,0.06,1.0;VDB=0.0207 PL 0 MT 620 . T . 283 . DP=933;DP4=581,315,1,0;MQ=58;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.4e-06,1.0,0.057;VDB=0.0245 PL 0 MT 621 . A . 283 . DP=930;DP4=585,327,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 622 . G . 283 . DP=925;DP4=600,317,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 623 . A . 283 . DP=925;DP4=584,317,1,1;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.9e-13,0.017,0.03;VDB=0.0414 PL 0 MT 624 . C . 283 . DP=928;DP4=584,303,0,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0116 PL 0 MT 625 . G . 283 . DP=930;DP4=593,301,2,0;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,0.0069,1.0,0.24;VDB=0.0143 PL 0 MT 626 . G . 283 . DP=920;DP4=583,289,1,2;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.26,3e-08,0.011,0.15;VDB=0.0435 PL 0 MT 627 . G . 283 . DP=922;DP4=583,290,0,1;MQ=57;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.33,1.1e-06,1.0,1.0;VDB=0.0429 PL 0 MT 628 . C . 283 . DP=921;DP4=584,303,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0111 PL 0 MT 629 . T . 283 . DP=926;DP4=613,293,2,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.5e-08,1.0,0.1;VDB=0.009 PL 0 MT 630 . C . 283 . DP=927;DP4=604,308,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0363 PL 0 MT 631 . A . 283 . DP=925;DP4=609,306,0,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0343 PL 0 MT 632 . C . 283 . DP=923;DP4=595,309,3,0;MQ=56;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,5.8e-20,0.15,1.0;VDB=0.0335 PL 0 MT 633 . A . 283 . DP=926;DP4=606,312,0,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 634 . T . 283 . DP=926;DP4=614,282,0,1;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.32,0.0078,1.0,1.0;VDB=0.0125 PL 0 MT 635 . C . 283 . DP=925;DP4=597,304,6,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.19,2.3e-19,0.00018,0.23;VDB=0.0447 PL 0 MT 636 . A . 283 . DP=926;DP4=607,302,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0009,0.048,1.0;VDB=0.0435 PL 0 MT 637 . C . 283 . DP=933;DP4=589,289,1,0;MQ=55;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0029,1.0,1.0;VDB=0.0207 PL 0 MT 638 . C . 283 . DP=935;DP4=597,290,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 639 . C . 283 . DP=928;DP4=594,289,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 640 . C . 283 . DP=932;DP4=591,309,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0077 PL 0 MT 641 . A . 283 . DP=935;DP4=603,314,0,0;MQ=54;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 642 . T . 283 . DP=935;DP4=620,289,0,3;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.033,4.4e-10,0.44,1.0;VDB=0.0268 PL 0 MT 643 . A . 283 . DP=931;DP4=599,299,2,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.1e-09,0.29,0.0039;VDB=0.0173 PL 0 MT 644 . A . 283 . DP=927;DP4=593,298,0,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0192 PL 0 MT 645 . A . 283 . DP=928;DP4=593,318,1,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.5e-05,0.094,1.0;VDB=0.0335 PL 0 MT 646 . C . 283 . DP=927;DP4=591,319,1,0;MQ=53;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.1e-06,1.0,0.054;VDB=0.0237 PL 0 MT 647 . A . 283 . DP=932;DP4=602,303,0,1;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.34,1.5e-08,0.02,0.02 PL 0 MT 648 . A . 283 . DP=931;DP4=591,304,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 649 . A . 283 . DP=937;DP4=596,317,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 650 . T . 283 . DP=948;DP4=625,303,0,0;MQ=52;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0299 PL 0 MT 651 . A . 283 . DP=940;DP4=604,317,3,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.56,4.4e-09,1.0,1.0;VDB=0.0215 PL 0 MT 652 . G . 283 . DP=931;DP4=610,301,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 653 . G . 283 . DP=929;DP4=592,300,0,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0145 PL 0 MT 654 . T . 283 . DP=935;DP4=609,309,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.039,0.079,0.099;VDB=0.0445 PL 0 MT 655 . T . 283 . DP=940;DP4=601,309,1,0;MQ=51;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.00025,1.0,0.33;VDB=0.0215 PL 0 MT 656 . T . 283 . DP=938;DP4=594,314,0,0;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0227 PL 0 MT 657 . G . 283 . DP=938;DP4=613,300,0,5;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.004,1.5e-13,0.083,0.12;VDB=0.0414 PL 0 MT 658 . G . 283 . DP=938;DP4=592,300,1,2;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.26,2.3e-11,1.0,1.0;VDB=0.0414 PL 0 MT 659 . T . 283 . DP=934;DP4=608,290,1,4;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.041,6.2e-12,1.0,0.46;VDB=0.0445 PL 0 MT 660 . C . 283 . DP=931;DP4=594,302,2,1;MQ=50;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,2.2e-19,0.056,0.13;VDB=0.0302 PL 0 MT 661 . C . 283 . DP=928;DP4=586,312,0,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0156 PL 0 MT 662 . T . 283 . DP=925;DP4=614,298,0,1;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.33,7.3e-06,1.0,0.33;VDB=0.0233 PL 0 MT 663 . A . 283 . DP=922;DP4=592,311,0,1;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.35,1e-07,0.17,0.016;VDB=0.02 PL 0 MT 664 . G . 283 . DP=915;DP4=600,298,1,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.054,0.0044,1.0;VDB=0.0248 PL 0 MT 665 . C . 283 . DP=911;DP4=567,292,4,0;MQ=49;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.31,8.9e-10,1.0,1.0;VDB=0.0367 PL 0 MT 666 . C . 283 . DP=906;DP4=576,308,2,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,5.6e-11,0.48,0.28;VDB=0.0238 PL 0 MT 667 . T . 283 . DP=908;DP4=595,299,0,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 668 . T . 283 . DP=906;DP4=582,298,0,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 669 . T . 283 . DP=905;DP4=574,303,2,0;MQ=48;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,2.6e-10,0.26,0.22;VDB=0.0252 PL 0 MT 670 . C . 283 . DP=901;DP4=582,310,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 671 . T . 283 . DP=900;DP4=590,304,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 672 . A . 283 . DP=899;DP4=573,307,0,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 673 . T . 283 . DP=902;DP4=591,301,1,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.7e-08,0.05,1.0;VDB=0.02 PL 0 MT 674 . T . 283 . DP=898;DP4=576,300,1,0;MQ=47;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,9.9e-12,1.0,0.03 PL 0 MT 675 . A . 283 . DP=893;DP4=576,301,2,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,7.1e-10,0.36,1.0;VDB=0.01 PL 0 MT 676 . G . 283 . DP=888;DP4=586,290,2,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.6e-14,1.0,0.34;VDB=0.0135 PL 0 MT 677 . C . 283 . DP=879;DP4=562,290,2,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,0.0012,1.0,0.11;VDB=0.0202 PL 0 MT 678 . T . 283 . DP=875;DP4=585,279,0,0;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0367 PL 0 MT 679 . C . 283 . DP=872;DP4=571,284,1,1;MQ=46;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,9.3e-10,0.38,0.06;VDB=0.0175 PL 0 MT 680 . T . 283 . DP=874;DP4=583,283,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 681 . T . 283 . DP=870;DP4=569,275,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 682 . A . 283 . DP=860;DP4=568,276,2,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1e-11,0.15,1.0;VDB=0.0252 PL 0 MT 683 . G . 283 . DP=858;DP4=584,270,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 684 . T . 283 . DP=855;DP4=584,262,0,0;MQ=45;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 685 . A . 283 . DP=853;DP4=571,262,1,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,5.3e-08,1.0,0.23 PL 0 MT 686 . A . 283 . DP=848;DP4=571,262,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 687 . G . 283 . DP=847;DP4=585,257,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 688 . A . 283 . DP=845;DP4=569,262,1,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.5e-07,0.15,1.0;VDB=0.0253 PL 0 MT 689 . T . 283 . DP=845;DP4=580,257,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.025 PL 0 MT 690 . T . 283 . DP=852;DP4=569,264,0,1;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.32,8.9e-09,0.26,1.0 PL 0 MT 691 . A . 283 . DP=846;DP4=568,263,1,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.6e-05,0.085,0.031;VDB=0.0078 PL 0 MT 692 . C . 283 . DP=843;DP4=554,266,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 693 . A . 283 . DP=835;DP4=566,262,0,2;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.1,2.1e-10,0.086,0.023;VDB=0.0168 PL 0 MT 694 . C . 283 . DP=833;DP4=556,263,1,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.8e-08,0.073,0.12;VDB=0.0 PL 0 MT 695 . A . 283 . DP=838;DP4=569,262,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0207 PL 0 MT 696 . T . 283 . DP=837;DP4=577,253,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 697 . G . 283 . DP=836;DP4=575,249,1,2;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.22,3.7e-16,1.0,1.0;VDB=0.0245 PL 0 MT 698 . C . 283 . DP=836;DP4=559,256,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.0,0.18,1.0;VDB=0.0106 PL 0 MT 699 . A . 283 . DP=833;DP4=571,253,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 700 . A . 283 . DP=830;DP4=558,258,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 701 . G . 283 . DP=826;DP4=565,248,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0062 PL 0 MT 702 . C . 283 . DP=834;DP4=554,266,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.019 PL 0 MT 703 . A . 283 . DP=828;DP4=563,260,0,1;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.32,2.7e-05,1.0,1.0 PL 0 MT 704 . T . 283 . DP=828;DP4=567,239,0,1;MQ=39;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.3,0.054,0.098,1.0;VDB=0.033 PL 0 MT 705 . C . 283 . DP=825;DP4=558,247,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0394 PL 0 MT 706 . C . 283 . DP=827;DP4=551,253,3,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.56,2.9e-10,0.045,1.0;VDB=0.0268 PL 0 MT 707 . C . 283 . DP=825;DP4=556,248,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0123 PL 0 MT 708 . C . 283 . DP=820;DP4=553,250,1,1;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.53,3.1e-06,1.0,0.16;VDB=0.0193 PL 0 MT 709 . G . 283 . DP=833;DP4=566,256,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 710 . T . 283 . DP=834;DP4=567,260,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0193 PL 0 MT 711 . T . 283 . DP=833;DP4=557,256,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 712 . C . 283 . DP=838;DP4=566,256,0,0;MQ=40;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 713 . C . 283 . DP=839;DP4=559,268,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,7.3e-06,0.48,1.0;VDB=0.0158 PL 0 MT 714 . A . 283 . DP=861;DP4=560,296,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0188 PL 0 MT 715 . G . 283 . DP=856;DP4=560,279,0,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 716 . T . 283 . DP=856;DP4=557,290,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.019,0.47,1.0;VDB=0.0073 PL 0 MT 717 . G . 283 . DP=853;DP4=554,288,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.1e-06,0.15,0.12;VDB=0.0111 PL 0 MT 718 . A . 283 . DP=854;DP4=546,300,0,1;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.36,0.028,1.0,1.0 PL 0 MT 719 . G . 283 . DP=851;DP4=547,279,0,2;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.11,0.00011,1.0,0.1;VDB=0.0435 PL 0 MT 720 . T . 283 . DP=859;DP4=545,281,2,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.55,0.001,0.21,0.32;VDB=0.035 PL 0 MT 721 . T . 283 . DP=860;DP4=543,276,1,1;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.4e-10,0.18,1.0;VDB=0.0057 PL 0 MT 722 . C . 283 . DP=862;DP4=540,307,1,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,1.2e-05,0.14,0.46 PL 0 MT 723 . A . 283 . DP=857;DP4=545,297,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.14,0.25,0.036;VDB=0.0394 PL 0 MT 724 . C . 283 . DP=862;DP4=535,283,1,0;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0038,0.45,1.0;VDB=0.0094 PL 0 MT 725 . C . 283 . DP=864;DP4=532,286,1,2;MQ=41;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.28,4.9e-14,0.34,1.0;VDB=0.0417 PL 0 MT 726 . C . 283 . DP=861;DP4=537,308,0,1;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.37,2.3e-06,1.0,0.14;VDB=0.0042 PL 0 MT 727 . T . 283 . DP=861;DP4=548,290,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0325 PL 0 MT 728 . C . 283 . DP=860;DP4=541,312,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 729 . T . 283 . DP=863;DP4=547,283,0,1;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.34,7.1e-05,0.24,0.39;VDB=0.0025 PL 0 MT 730 . A . 283 . DP=865;DP4=543,282,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 731 . A . 283 . DP=867;DP4=542,280,0,0;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 732 . A . 283 . DP=868;DP4=542,317,1,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,0.0024,0.22,0.44;VDB=0.0049 PL 0 MT 733 . T . 283 . DP=872;DP4=546,269,1,2;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.26,8.1e-05,0.31,0.14;VDB=0.0268 PL 0 MT 734 . C . 283 . DP=874;DP4=540,316,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.022 PL 0 MT 735 . A . 283 . DP=876;DP4=545,313,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0073 PL 0 MT 736 . C . 283 . DP=877;DP4=537,280,1,1;MQ=42;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,9.7e-05,0.096,1.0;VDB=0.0215 PL 0 MT 737 . C . 283 . DP=874;DP4=522,330,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 738 . A . 283 . DP=875;DP4=533,331,0,0;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.0057 PL 0 MT 739 . C . 283 . DP=880;DP4=533,293,0,1;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.36,0.00013,0.043,1.0;VDB=0.0225 PL 0 MT 740 . G . 283 . DP=879;DP4=529,324,0,2;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.15,0.00048,0.21,1.0;VDB=0.0074 PL 0 MT 741 . A . 283 . DP=886;DP4=531,345,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;VDB=0.021 PL 0 MT 742 . T . 283 . DP=888;DP4=539,306,0,3;MQ=43;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.048,1.5e-08,1.0,1.0;VDB=0.0006 PL 0 MT 743 . C . 283 . DP=887;DP4=533,344,1,1;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,4.4e-08,1.0,0.048;VDB=0.035 PL 0 MT 744 . A . 283 . DP=888;DP4=538,316,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 745 . A . 283 . DP=891;DP4=532,320,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 746 . A . 283 . DP=887;DP4=528,317,1,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,6.3e-06,0.17,0.46;VDB=0.0123 PL 0 MT 747 . A . 283 . DP=884;DP4=524,347,0,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0 PL 0 MT 748 . G . 283 . DP=883;DP4=520,311,1,0;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=1.0,8.1e-05,0.035,1.0;VDB=0.0302 PL 0 MT 749 . G . 283 . DP=888;DP4=503,316,0,1;MQ=44;FQ=-282.0;AF1=0.0;AC1=0.0;PV4=0.39,0.027,0.035,1.0;VDB=0.044 PL 0 MT 750 . A G 222 . DP=890;DP4=0,3,483,315;MQ=45;FQ=-282.0;AF1=1.0;AC1=2.0;PV4=0.062,1.0,0.18,1.0;VDB=0.0435 GT:PL:GQ 1/1:255,255,0:99 ok testWrite (vcf.test.test_vcf.TestWriterDictionaryMeta) ... ok test_samples (vcf.test.test_vcf.TestSamplesSpace) ... ok test_metadata_whitespace (vcf.test.test_vcf.TestMetadataWhitespace) ... ok test_mixed_filtering (vcf.test.test_vcf.TestMixedFiltering) ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/mixed-filtering.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_aaf (vcf.test.test_vcf.TestRecord) ... /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:620: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'> reader = vcf.Reader(fh('example-4.1-ploidy.vcf')) ResourceWarning: Enable tracemalloc to get the object allocation traceback /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1-ploidy.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_call_rate (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_None_alt (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_breakend (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_deletion (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_insert_and_snp (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_insertion (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_insertion_and_deletion (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_multiple_snps (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_snp (vcf.test.test_vcf.TestRecord) ... ok test_coordinates_for_snp_and_deletion (vcf.test.test_vcf.TestRecord) ... ok test_dunder_eq (vcf.test.test_vcf.TestRecord) ... /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:583: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'> rec = next(vcf.Reader(fh('example-4.0.vcf'))) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_heterozygosity (vcf.test.test_vcf.TestRecord) ... ok test_info_multiple_values (vcf.test.test_vcf.TestRecord) ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1-info-multiple-values.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_is_deletion (vcf.test.test_vcf.TestRecord) ... ok test_is_indel (vcf.test.test_vcf.TestRecord) ... ok test_is_snp (vcf.test.test_vcf.TestRecord) ... ok test_is_snp_for_n_alt (vcf.test.test_vcf.TestRecord) ... ok test_is_sv (vcf.test.test_vcf.TestRecord) ... /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:837: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1-sv.vcf' mode='rt' encoding='UTF-8'> reader = vcf.Reader(fh('example-4.0.vcf')) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_is_sv_precise (vcf.test.test_vcf.TestRecord) ... /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:870: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1-sv.vcf' mode='rt' encoding='UTF-8'> reader = vcf.Reader(fh('example-4.0.vcf')) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_is_transition (vcf.test.test_vcf.TestRecord) ... ok test_num_calls (vcf.test.test_vcf.TestRecord) ... ok test_pi (vcf.test.test_vcf.TestRecord) ... ok test_pickle (vcf.test.test_vcf.TestRecord) ... ok test_qual (vcf.test.test_vcf.TestRecord) ... ok test_sv_end (vcf.test.test_vcf.TestRecord) ... /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:903: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1-sv.vcf' mode='rt' encoding='UTF-8'> reader = vcf.Reader(fh('example-4.0.vcf')) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_var_subtype (vcf.test.test_vcf.TestRecord) ... /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:804: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'> reader = vcf.Reader(fh('example-4.1-sv.vcf')) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_var_type (vcf.test.test_vcf.TestRecord) ... /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:770: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'> reader = vcf.Reader(fh('example-4.1-sv.vcf')) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_dunder_eq (vcf.test.test_vcf.TestCall) ... ok test_gt_bases (vcf.test.test_vcf.TestCall) ... ok test_gt_types (vcf.test.test_vcf.TestCall) ... ok test_phased (vcf.test.test_vcf.TestCall) ... ok testFetchRange (vcf.test.test_vcf.TestFetch) ... skipped 'test requires installation of PySAM.' testFetchesAllFromChromIfOnlyChromSpecified (vcf.test.test_vcf.TestFetch) ... skipped 'test requires installation of PySAM.' testFetchesFromStartIfStartOnlySpecified (vcf.test.test_vcf.TestFetch) ... skipped 'test requires installation of PySAM.' testNoVariantsForZeroLengthInterval (vcf.test.test_vcf.TestFetch) ... skipped 'test requires installation of PySAM.' testNoVariantsInRange (vcf.test.test_vcf.TestFetch) ... skipped 'test requires installation of PySAM.' testFetch (vcf.test.test_vcf.TestIssue201) ... skipped 'test requires installation of PySAM.' testIterate (vcf.test.test_vcf.TestIssue201) ... skipped 'test requires installation of PySAM.' test_vcf_metadata_parser_doesnt_break_with_empty_number_tags (vcf.test.test_vcf.TestIssue234) ... ok test_FT_one_two (vcf.test.test_vcf.TestIssue246) ... /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:1361: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/FT.vcf' mode='rt' encoding='UTF-8'> reader=list(vcf.Reader(fh('FT.vcf'))) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_FT_pass_two (vcf.test.test_vcf.TestIssue246) ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/FT.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_remains_singleton_list (vcf.test.test_vcf.TestIssue254) ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-254.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_is_filt_call_one (vcf.test.test_vcf.TestIsFiltered) ... /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:1413: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/FT.vcf' mode='rt' encoding='UTF-8'> reader = list(vcf.Reader(fh('FT.vcf'))) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_is_filt_call_pass_two (vcf.test.test_vcf.TestIsFiltered) ... ok test_is_filt_call_unset (vcf.test.test_vcf.TestIsFiltered) ... ok test_is_filt_record (vcf.test.test_vcf.TestIsFiltered) ... ok testOpenFilehandle (vcf.test.test_vcf.TestOpenMethods) ... ok testOpenFilehandleGzipped (vcf.test.test_vcf.TestOpenMethods) ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.BufferedReader name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/tb.vcf.gz'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testOpenFilename (vcf.test.test_vcf.TestOpenMethods) ... ok testOpenFilenameGzipped (vcf.test.test_vcf.TestOpenMethods) ... ok testCLIListSamples (vcf.test.test_vcf.TestSampleFilter) ... skipped 'test broken for Python 3' testCLIWithFilter (vcf.test.test_vcf.TestSampleFilter) ... skipped 'test broken for Python 3' testSampleFilterModule (vcf.test.test_vcf.TestSampleFilter) ... /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:1486: ResourceWarning: unclosed file <_io.TextIOWrapper name='vcf/test/example-4.1.vcf' mode='rt' encoding='UTF-8'> del filt ResourceWarning: Enable tracemalloc to get the object allocation traceback ok testApplyFilter (vcf.test.test_vcf.TestFilter) ... skipped 'test currently broken' testApplyMultipleFilters (vcf.test.test_vcf.TestFilter) ... skipped 'test currently broken' test_issue_16 (vcf.test.test_vcf.TestRegression) ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-16.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_null_mono (vcf.test.test_vcf.TestRegression) ... Record(CHROM=20, POS=14370, REF=G, ALT=[A]) Call(sample=NA00001, CallData(GT=0|0, GQ=48, DP=1, HQ=[51, 51])) Call(sample=NA00002, CallData(GT=1|0, GQ=48, DP=8, HQ=[51, 51])) Call(sample=NA00003, CallData(GT=1/1, GQ=43, DP=5, HQ=[None, None])) Record(CHROM=20, POS=17330, REF=T, ALT=[A]) Call(sample=NA00001, CallData(GT=0|0, GQ=49, DP=3, HQ=[58, 50])) Call(sample=NA00002, CallData(GT=0|1, GQ=3, DP=5, HQ=[65, 3])) Call(sample=NA00003, CallData(GT=0/0, GQ=41, DP=3, HQ=None)) Record(CHROM=20, POS=1110696, REF=A, ALT=[G, T]) Call(sample=NA00001, CallData(GT=1|2, GQ=21, DP=6, HQ=[23, 27])) Call(sample=NA00002, CallData(GT=2|1, GQ=2, DP=0, HQ=[18, 2])) Call(sample=NA00003, CallData(GT=2/2, GQ=35, DP=4, HQ=None)) Record(CHROM=20, POS=1230237, REF=T, ALT=[None]) Call(sample=NA00001, CallData(GT=0|0, GQ=54, DP=7, HQ=[56, 60])) Call(sample=NA00002, CallData(GT=0|0, GQ=48, DP=4, HQ=[51, 51])) Call(sample=NA00003, CallData(GT=0/0, GQ=61, DP=2, HQ=None)) Record(CHROM=20, POS=1231234, REF=AT, ALT=[A]) Call(sample=NA00001, CallData(GT=1|1, GQ=23, DP=7, HQ=[26, 30])) Call(sample=NA00002, CallData(GT=0|0, GQ=27, DP=9, HQ=[56, 60])) Call(sample=NA00003, CallData(GT=0|0, GQ=31, DP=10, HQ=[65, 71])) Record(CHROM=20, POS=1234567, REF=GTCT, ALT=[G, GTACT]) Call(sample=NA00001, CallData(GT=./., GQ=35, DP=4)) Call(sample=NA00002, CallData(GT=0/2, GQ=17, DP=2)) Call(sample=NA00003, CallData(GT=1/1, GQ=40, DP=3)) CallData(GT=0|0, GQ=48, DP=1, HQ=[51, 51]) CallData(GT=1|0, GQ=48, DP=8, HQ=[51, 51]) CallData(GT=1/1, GQ=43, DP=5, HQ=[None, None]) CallData(GT=0|0, GQ=49, DP=3, HQ=[58, 50]) CallData(GT=0|1, GQ=3, DP=5, HQ=[65, 3]) CallData(GT=0/0, GQ=41, DP=3, HQ=None) CallData(GT=1|2, GQ=21, DP=6, HQ=[23, 27]) CallData(GT=2|1, GQ=2, DP=0, HQ=[18, 2]) CallData(GT=2/2, GQ=35, DP=4, HQ=None) CallData(GT=0|0, GQ=54, DP=7, HQ=[56, 60]) CallData(GT=0|0, GQ=48, DP=4, HQ=[51, 51]) CallData(GT=0/0, GQ=61, DP=2, HQ=None) CallData(GT=1|1, GQ=23, DP=7, HQ=[26, 30]) CallData(GT=0|0, GQ=27, DP=9, HQ=[56, 60]) CallData(GT=0|0, GQ=31, DP=10, HQ=[65, 71]) CallData(GT=./., GQ=35, DP=4) CallData(GT=0/2, GQ=17, DP=2) CallData(GT=1/1, GQ=40, DP=3) /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/null_genotype_mono.vcf ##fileformat=VCFv4.1 ##UnifiedGenotyper="analysis_type=UnifiedGenotyper input_file=[np_control.bam] read_buffer_size=null phone_home=STANDARD read_filter=[] intervals=[tests/read_chr.intervals] excludeIntervals=null interval_set_rule=UNION interval_merging=ALL reference_sequence=/data/reference/ucsc/hg19/ucsc.hg19.fasta rodBind=[] nonDeterministicRandomSeed=false downsampling_type=BY_SAMPLE downsample_to_fraction=null downsample_to_coverage=250 baq=OFF baqGapOpenPenalty=40.0 performanceLog=null useOriginalQualities=false defaultBaseQualities=-1 validation_strictness=SILENT unsafe=null num_threads=1 num_cpu_threads=null num_io_threads=null num_bam_file_handles=null read_group_black_list=null pedigree=[] pedigreeString=[] pedigreeValidationType=STRICT allow_intervals_with_unindexed_bam=false logging_level=info log_to_file=null help=false genotype_likelihoods_model=SNP p_nonref_model=EXACT heterozygosity=0.001 pcr_error_rate=1.0E-4 genotyping_mode=DISCOVERY output_mode=EMIT_ALL_SITES standard_min_confidence_threshold_for_calling=30.0 standard_min_confidence_threshold_for_emitting=30.0 computeSLOD=false alleles=(RodBinding name= source=UNBOUND) min_base_quality_score=17 max_deletion_fraction=0.05 multiallelic=false max_alternate_alleles=5 min_indel_count_for_genotyping=5 indel_heterozygosity=1.25E-4 indelGapContinuationPenalty=10.0 indelGapOpenPenalty=45.0 indelHaplotypeSize=80 bandedIndel=false indelDebug=false ignoreSNPAlleles=false dbsnp=(RodBinding name= source=UNBOUND) out=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub NO_HEADER=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub sites_only=org.broadinstitute.sting.gatk.io.stubs.VCFWriterStub debug_file=null metrics_file=null annotation=[] excludeAnnotation=[] filter_mismatching_base_and_quals=false" ##reference=file:///data/reference/ucsc/hg19/ucsc.hg19.fasta ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##INFO= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##FORMAT= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= ##contig= #CHROM POS ID REF ALT QUAL FILTER INFO FORMAT NA19239 chr1 65312657 . G . . . . GT ./. /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/null_genotype_mono.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_trim (vcf.test.test_vcf.TestUtils) ... ok test_walk (vcf.test.test_vcf.TestUtils) ... /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:1587: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'> reader1 = vcf.Reader(fh('walk_left.vcf')) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:1588: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'> reader2 = vcf.Reader(fh('example-4.0.vcf')) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:1604: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/walk_left.vcf' mode='rt' encoding='UTF-8'> reader1 = vcf.Reader(fh('issue-140-file1.vcf')) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:1605: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'> reader2 = vcf.Reader(fh('issue-140-file2.vcf')) ResourceWarning: Enable tracemalloc to get the object allocation traceback /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py:1606: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.0.vcf' mode='rt' encoding='UTF-8'> reader3 = vcf.Reader(fh('issue-140-file3.vcf')) ResourceWarning: Enable tracemalloc to get the object allocation traceback /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-140-file1.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-140-file2.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-140-file3.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_meta (vcf.test.test_vcf.TestGATKMeta) ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/gatk_26_meta.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_read_uncalled (vcf.test.test_vcf.TestUncalledGenotypes) Test that uncalled genotypes are properly read into ... ok test_write_uncalled (vcf.test.test_vcf.TestUncalledGenotypes) Test that uncalled genotypes are written just as ... ok test_strelka (vcf.test.test_vcf.TestStrelka) ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/strelka.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_parse (vcf.test.test_vcf.TestBadInfoFields) ... /usr/lib/python3.7/unittest/case.py:615: ResourceWarning: unclosed file <_io.TextIOWrapper name='/build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/bad-info-character.vcf' mode='rt' encoding='UTF-8'> testMethod() ResourceWarning: Enable tracemalloc to get the object allocation traceback ok ---------------------------------------------------------------------- Ran 104 tests in 5.693s OK (skipped=11) create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python2,python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py install --root /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf running install running build running build_py running egg_info writing requirements to PyVCF.egg-info/requires.txt writing PyVCF.egg-info/PKG-INFO writing top-level names to PyVCF.egg-info/top_level.txt writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'PyVCF.egg-info/SOURCES.txt' running build_ext skipping 'vcf/cparse.c' Cython extension (up-to-date) running build_scripts running install_lib creating /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf creating /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr creating /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib creating /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7 creating /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages creating /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/cparse.so -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/cparse.pyx -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf creating /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/issue-201.vcf.gz.tbi -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/tb.vcf.gz.tbi -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/1kg.vcf.gz -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/issue-201.vcf.gz -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/tb.vcf.gz -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/1kg.sites.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/FT.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/bad-info-character.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/bcftools.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/contig_idonly.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/example-4.0.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/example-4.1-bnd.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/example-4.1-info-multiple-values.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/example-4.1-ploidy.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/example-4.1-sv.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/example-4.1.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/example-4.2.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/freebayes.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/gatk.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/gatk_26_meta.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/gonl.chr20.release4.gtc.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/info-type-character.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/issue-140-file1.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/issue-140-file2.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/issue-140-file3.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/issue-16.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/issue-214.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/issue-254.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/issue_49.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/metadata-whitespace.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/mixed-filtering.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/null_genotype_mono.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/parse-meta-line.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/samples-space.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/samtools.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/strelka.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/string_as_flag.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/uncalled_genotypes.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/walk_left.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/walk_refcall.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/__init__.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/prof.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/test/test_vcf.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/__init__.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/filters.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/model.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/parser.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/sample_filter.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython2_2.7_pyvcf/build/vcf/utils.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf byte-compiling /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test/__init__.py to __init__.pyc byte-compiling /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test/prof.py to prof.pyc byte-compiling /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/test/test_vcf.py to test_vcf.pyc byte-compiling /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/__init__.py to __init__.pyc byte-compiling /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/filters.py to filters.pyc byte-compiling /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/model.py to model.pyc byte-compiling /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/parser.py to parser.pyc byte-compiling /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/sample_filter.py to sample_filter.pyc byte-compiling /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/utils.py to utils.pyc running install_egg_info Copying PyVCF.egg-info to /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/lib/python2.7/dist-packages/PyVCF-0.6.8.egg-info Skipping SOURCES.txt running install_scripts creating /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/bin copying build/scripts-2.7/vcf_sample_filter.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/bin copying build/scripts-2.7/vcf_filter.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/bin copying build/scripts-2.7/vcf_melt -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/bin changing mode of /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/bin/vcf_sample_filter.py to 755 changing mode of /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/bin/vcf_filter.py to 755 changing mode of /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python-pyvcf/usr/bin/vcf_melt to 755 I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf running install running build running build_py running egg_info writing PyVCF.egg-info/PKG-INFO writing dependency_links to PyVCF.egg-info/dependency_links.txt writing entry points to PyVCF.egg-info/entry_points.txt writing requirements to PyVCF.egg-info/requires.txt writing top-level names to PyVCF.egg-info/top_level.txt reading manifest file 'PyVCF.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'PyVCF.egg-info/SOURCES.txt' running build_ext skipping 'vcf/cparse.c' Cython extension (up-to-date) running build_scripts running install_lib creating /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf creating /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr creating /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib creating /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7 creating /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages creating /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf creating /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/__pycache__ copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/__pycache__/utils.cpython-37.pyc -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/__pycache__ copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/__pycache__/sample_filter.cpython-37.pyc -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/__pycache__ copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/__pycache__/filters.cpython-37.pyc -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/__pycache__ copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/__pycache__/model.cpython-37.pyc -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/__pycache__ copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/__pycache__/parser.cpython-37.pyc -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/__pycache__ copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/__pycache__/__init__.cpython-37.pyc -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/__pycache__ copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/cparse.cpython-37m-x86_64-linux-gnu.so -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/cparse.pyx -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf creating /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test creating /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test/__pycache__ copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/__pycache__/test_vcf.cpython-37.pyc -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test/__pycache__ copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/__pycache__/__init__.cpython-37.pyc -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test/__pycache__ copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-201.vcf.gz.tbi -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/tb.vcf.gz.tbi -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/1kg.vcf.gz -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-201.vcf.gz -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/tb.vcf.gz -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/1kg.sites.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/FT.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/bad-info-character.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/bcftools.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/contig_idonly.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.0.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1-bnd.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1-info-multiple-values.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1-ploidy.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1-sv.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.1.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/example-4.2.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/freebayes.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/gatk.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/gatk_26_meta.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/gonl.chr20.release4.gtc.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/info-type-character.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-140-file1.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-140-file2.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-140-file3.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-16.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-214.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue-254.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/issue_49.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/metadata-whitespace.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/mixed-filtering.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/null_genotype_mono.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/parse-meta-line.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/samples-space.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/samtools.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/strelka.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/string_as_flag.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/uncalled_genotypes.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/walk_left.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/walk_refcall.vcf -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/__init__.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/prof.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/test/test_vcf.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/__init__.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/filters.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/model.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/parser.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/sample_filter.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf copying /build/python-pyvcf-0.6.8+git20170215.476169c/.pybuild/cpython3_3.7_pyvcf/build/vcf/utils.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf byte-compiling /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test/prof.py to prof.cpython-37.pyc byte-compiling /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/test/test_vcf.py to test_vcf.cpython-37.pyc byte-compiling /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/__init__.py to __init__.cpython-37.pyc byte-compiling /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/filters.py to filters.cpython-37.pyc byte-compiling /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/model.py to model.cpython-37.pyc byte-compiling /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/parser.py to parser.cpython-37.pyc byte-compiling /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/sample_filter.py to sample_filter.cpython-37.pyc byte-compiling /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/vcf/utils.py to utils.cpython-37.pyc running install_egg_info Copying PyVCF.egg-info to /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/lib/python3.7/dist-packages/PyVCF-0.6.8.egg-info Skipping SOURCES.txt running install_scripts creating /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/bin copying build/scripts-3.7/vcf_sample_filter.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/bin copying build/scripts-3.7/vcf_filter.py -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/bin copying build/scripts-3.7/vcf_melt -> /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/bin changing mode of /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/bin/vcf_sample_filter.py to 755 changing mode of /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/bin/vcf_filter.py to 755 changing mode of /build/python-pyvcf-0.6.8+git20170215.476169c/debian/python3-pyvcf/usr/bin/vcf_melt to 755 debian/rules override_dh_install make[1]: Entering directory '/build/python-pyvcf-0.6.8+git20170215.476169c' dh_install # move testdata to separate dir mkdir -p debian/python-pyvcf-examples/usr/share/doc/python-pyvcf-examples mv `find debian/python-pyvcf -type d -name test | head -n 1` debian/python-pyvcf-examples/usr/share/doc/python-pyvcf-examples find debian/python3-pyvcf -type d -name test | xargs rm -rf find debian/python-pyvcf-examples/usr/share/doc/python-pyvcf-examples -name "*.pyc" -delete mkdir -p debian/pyvcf/usr mv debian/python3-pyvcf/usr/bin debian/pyvcf/usr # strip .py extension for py in debian/pyvcf/usr/bin/*.py ; do \ mv ${py} debian/pyvcf/usr/bin/`basename ${py} .py` ; \ done rm -rf debian/python-pyvcf/usr/bin make[1]: Leaving directory '/build/python-pyvcf-0.6.8+git20170215.476169c' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python2 -O--buildsystem=pybuild I: dh_python2 fs:343: renaming cparse.so to cparse.x86_64-linux-gnu.so debian/rules override_dh_python3 make[1]: Entering directory '/build/python-pyvcf-0.6.8+git20170215.476169c' dh_python3 --verbose D: dh_python3 dh_python3:161: version: 3.20190308 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '--verbose'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': True, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': None} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:166: supported Python versions: 3.7 (default=3.7) D: dh_python3 debhelper:107: skipping package: python-pyvcf D: dh_python3 debhelper:107: skipping package: python-pyvcf-examples D: dh_python3 debhelper:153: source=python-pyvcf, binary packages=['python3-pyvcf', 'pyvcf'] D: dh_python3 dh_python3:183: processing package python3-pyvcf... D: dh_python3 fs:49: moving files from debian/python3-pyvcf/usr/lib/python3.7/dist-packages to debian/python3-pyvcf/usr/lib/python3/dist-packages/ D: dh_python3 tools:232: invoking: /usr/bin/python3.7 -c 'import sysconfig as s;print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))' D: dh_python3 fs:260: package python3-pyvcf details = {'requires.txt': {'debian/python3-pyvcf/usr/lib/python3/dist-packages/PyVCF-0.6.8.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.7')}, 'ext_no_version': set()} D: dh_python3 depends:114: generating dependencies for package python3-pyvcf D: dh_python3 pydist:138: trying to find dependency for setuptools (python=None) D: dh_python3 depends:272: D={'python3-pkg-resources', 'python3 (>= 3.7~)', 'python3 (<< 3.8)', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] D: dh_python3 dh_python3:183: processing package pyvcf... D: dh_python3 fs:260: package pyvcf details = {'requires.txt': set(), 'egg-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3, /usr/bin/python3, /usr/bin/python3}, 'public_vers': set(), 'private_dirs': {}, 'compile': False, 'ext_vers': set(), 'ext_no_version': set()} D: dh_python3 depends:114: generating dependencies for package pyvcf D: dh_python3 depends:272: D={'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] make[1]: Leaving directory '/build/python-pyvcf-0.6.8+git20170215.476169c' dh_installinit -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_strip -O--buildsystem=pybuild dh_makeshlibs -O--buildsystem=pybuild dh_shlibdeps -O--buildsystem=pybuild dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python-pyvcf/usr/lib/python2.7/dist-packages/vcf/cparse.x86_64-linux-gnu.so was not linked against libpthread.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-pyvcf/usr/lib/python3/dist-packages/vcf/cparse.cpython-37m-x86_64-linux-gnu.so was not linked against libpthread.so.0 (it uses none of the library's symbols) dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python3-pyvcf: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pyvcf: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python-pyvcf: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-pyvcf: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-pyvcf: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pyvcf: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python-pyvcf: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-pyvcf: substitution variable ${python:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python-pyvcf-dbgsym' in '../python-pyvcf-dbgsym_0.6.8+git20170215.476169c-1_amd64.deb'. dpkg-deb: building package 'python3-pyvcf-dbgsym' in '../python3-pyvcf-dbgsym_0.6.8+git20170215.476169c-1_amd64.deb'. dpkg-deb: building package 'python-pyvcf-examples' in '../python-pyvcf-examples_0.6.8+git20170215.476169c-1_all.deb'. dpkg-deb: building package 'python-pyvcf' in '../python-pyvcf_0.6.8+git20170215.476169c-1_amd64.deb'. dpkg-deb: building package 'python3-pyvcf' in '../python3-pyvcf_0.6.8+git20170215.476169c-1_amd64.deb'. dpkg-deb: building package 'pyvcf' in '../pyvcf_0.6.8+git20170215.476169c-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-pyvcf_0.6.8+git20170215.476169c-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1070515 and its subdirectories I: Current time: Sat Jan 14 14:40:21 -12 2023 I: pbuilder-time-stamp: 1673750421 Sun Dec 12 20:17:21 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Sun Dec 12 20:17:21 UTC 2021 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Sun Dec 12 20:18:32 UTC 2021 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Sun Dec 12 20:18:32 UTC 2021 I: python-pyvcf_0.6.8+git20170215.476169c-1_amd64.changes: Format: 1.8 Date: Sat, 04 Aug 2018 04:03:05 +0200 Source: python-pyvcf Binary: python-pyvcf python-pyvcf-dbgsym python-pyvcf-examples python3-pyvcf python3-pyvcf-dbgsym pyvcf Architecture: amd64 all Version: 0.6.8+git20170215.476169c-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python-pyvcf - Variant Call Format (VCF) parser for Python python-pyvcf-examples - Example data for Variant Call Format (VCF) parser for Python python3-pyvcf - Variant Call Format (VCF) parser for Python 3 pyvcf - helper scripts for Variant Call Format (VCF) parser Changes: python-pyvcf (0.6.8+git20170215.476169c-1) unstable; urgency=medium . * d/watch: use git mode * drop unneeded get-orig-source target * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.5 * Testsuite: autopkgtest-pkg-python * Lintian override for Suggests which is correct * Lintian override for Python3 modules Checksums-Sha1: 929a5cee74700e94cf21e4176bf748167b4c15f3 65716 python-pyvcf-dbgsym_0.6.8+git20170215.476169c-1_amd64.deb 4c232929c20f6f3383ac8ac6483fb6b19a380cee 944412 python-pyvcf-examples_0.6.8+git20170215.476169c-1_all.deb 5d6d442f6d15f4149cb652d86da6815c51cc782a 7759 python-pyvcf_0.6.8+git20170215.476169c-1_amd64.buildinfo 8835f0b9d44b4d10c10d0e1c9a89636482786830 42820 python-pyvcf_0.6.8+git20170215.476169c-1_amd64.deb cbf1b5ff042e7eeda69c9b3a38eeba1b9747cdf3 84420 python3-pyvcf-dbgsym_0.6.8+git20170215.476169c-1_amd64.deb 25888ed1ea3af34227183b88e0edd4e38122df80 45764 python3-pyvcf_0.6.8+git20170215.476169c-1_amd64.deb 688807c7b4f6915d0f9a37d552a7e67afdbf19ed 10616 pyvcf_0.6.8+git20170215.476169c-1_all.deb Checksums-Sha256: 0542f2d3eb78d1990cc5e4f2441f449ac688e4afa5af92142d4eccc70d342f0d 65716 python-pyvcf-dbgsym_0.6.8+git20170215.476169c-1_amd64.deb 0541ba630a57e82e24a03a28f055628692fb734aa8f671ced60d63840b15dde0 944412 python-pyvcf-examples_0.6.8+git20170215.476169c-1_all.deb cec031ab02a817c5e9d56f2f3862a7770df4f16fd79443f841c513320eaf8785 7759 python-pyvcf_0.6.8+git20170215.476169c-1_amd64.buildinfo 53dbe04907c3c83f6578ada00ca141b5659a56201c92bbf6068b94ffa9ea7331 42820 python-pyvcf_0.6.8+git20170215.476169c-1_amd64.deb 4c0d558fdb0d04ec0a8392af0dc122f0cc319ad5559f936ab198def5d842ef17 84420 python3-pyvcf-dbgsym_0.6.8+git20170215.476169c-1_amd64.deb 4b0970689278684391dd1c8461a0cbc4da304999c463ddd1f080378499100fa7 45764 python3-pyvcf_0.6.8+git20170215.476169c-1_amd64.deb 9eeb189f41f0b6cf396f77ebd65fa68216b77f53f3da127a95ca2bffa76a9008 10616 pyvcf_0.6.8+git20170215.476169c-1_all.deb Files: 1551515523e44d67467bafe5b7ec9c96 65716 debug optional python-pyvcf-dbgsym_0.6.8+git20170215.476169c-1_amd64.deb 5014ea923bed421bd71c6ec5e7f25e99 944412 python optional python-pyvcf-examples_0.6.8+git20170215.476169c-1_all.deb bbc6cd0a9016b98c5ff4a0bd5508c753 7759 python optional python-pyvcf_0.6.8+git20170215.476169c-1_amd64.buildinfo b0ded7a515f5b938341cfc5df992aa03 42820 python optional python-pyvcf_0.6.8+git20170215.476169c-1_amd64.deb 3312ffedc9313e34692c3edde3972523 84420 debug optional python3-pyvcf-dbgsym_0.6.8+git20170215.476169c-1_amd64.deb d34533aeb65ef86b30594e7b34cf421c 45764 python optional python3-pyvcf_0.6.8+git20170215.476169c-1_amd64.deb be26963b2e9896db59b6bcf9437e3685 10616 python optional pyvcf_0.6.8+git20170215.476169c-1_all.deb Sun Dec 12 20:18:35 UTC 2021 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.Gblcuacjns/python-pyvcf_0.6.8+git20170215.476169c-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.Gblcuacjns/python-pyvcf_0.6.8+git20170215.476169c-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.Gblcuacjns/python-pyvcf_0.6.8+git20170215.476169c-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.Gblcuacjns/b1/python-pyvcf_0.6.8+git20170215.476169c-1_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.Gblcuacjns/b2/python-pyvcf_0.6.8+git20170215.476169c-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.324s) 0.324s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.047s) 0.047s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Sun Dec 12 20:18:37 UTC 2021 I: found no differences in the changes files, and a .buildinfo file also exists. Sun Dec 12 20:18:37 UTC 2021 I: python-pyvcf from buster built successfully and reproducibly on amd64. Sun Dec 12 20:18:39 UTC 2021 I: Submitting .buildinfo files to external archives: Sun Dec 12 20:18:39 UTC 2021 I: Submitting 12K b1/python-pyvcf_0.6.8+git20170215.476169c-1_amd64.buildinfo.asc Sun Dec 12 20:18:40 UTC 2021 I: Submitting 12K b2/python-pyvcf_0.6.8+git20170215.476169c-1_amd64.buildinfo.asc Sun Dec 12 20:18:41 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Dec 12 20:18:41 UTC 2021 I: Done submitting .buildinfo files. Sun Dec 12 20:18:41 UTC 2021 I: Removing signed python-pyvcf_0.6.8+git20170215.476169c-1_amd64.buildinfo.asc files: removed './b1/python-pyvcf_0.6.8+git20170215.476169c-1_amd64.buildinfo.asc' removed './b2/python-pyvcf_0.6.8+git20170215.476169c-1_amd64.buildinfo.asc'