Tue Mar 30 22:06:42 UTC 2021 I: starting to build plast/buster/amd64 on jenkins on '2021-03-30 22:06' Tue Mar 30 22:06:42 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_26/49573/console.log Tue Mar 30 22:06:42 UTC 2021 I: Downloading source for buster/plast=2.3.2+dfsg-1 --2021-03-30 22:06:43-- http://deb.debian.org/debian/pool/main/p/plast/plast_2.3.2+dfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2065 (2.0K) Saving to: ‘plast_2.3.2+dfsg-1.dsc’ 0K .. 100% 252M=0s 2021-03-30 22:06:43 (252 MB/s) - ‘plast_2.3.2+dfsg-1.dsc’ saved [2065/2065] Tue Mar 30 22:06:43 UTC 2021 I: plast_2.3.2+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: plast Binary: plast, plast-example Architecture: any-amd64 all Version: 2.3.2+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://plast.inria.fr/ Standards-Version: 4.1.5 Vcs-Browser: https://salsa.debian.org/med-team/plast Vcs-Git: https://salsa.debian.org/med-team/plast.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~), cmake, libpcre3-dev, default-jdk Package-List: plast deb science optional arch=any-amd64,x32 plast-example deb science optional arch=all Checksums-Sha1: 693e7fd60cb7cd41a9843320e1349a7a23d61671 5726436 plast_2.3.2+dfsg.orig.tar.xz 0f4f145aeb46b71640de368efe18ac932965df46 18628 plast_2.3.2+dfsg-1.debian.tar.xz Checksums-Sha256: db8bcabc66ecc2555d1aeeba68dfc459dd7977251274c1f793e78da092ee9ff1 5726436 plast_2.3.2+dfsg.orig.tar.xz 8b171b09b57cfbe1d14020c1e17e394d70ff20f0d0d7827ed3680bf15b6466e7 18628 plast_2.3.2+dfsg-1.debian.tar.xz Files: db86adecf11d4eb4e75280a4da50ce13 5726436 plast_2.3.2+dfsg.orig.tar.xz 6ec6dbf5a9ce2f92f32d7682342190f5 18628 plast_2.3.2+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAltI6tYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHBqQ//QwuNodALoWw5M7COm6wc5SY7LQA4SrK5 hipFot8oVIR0WSjq/5xO4yQWHtMwYuAuNS3KrzyWUqL1Js2YDshqU7vgImfLNZqB A1NbnHhaVxDn5S1WN9icPHewAb1n11qGcUsxHVb2pR27qwezoL5Ct9hZ6kS/xThD qXhR500iPOekIPdjqNcYj/3hM0TEuIUXo+XYzpo3FJnc21wUNwLNZa/p6ANsLopR Ogz7yHWEJhzxUbYUbAUk3z8oe20Cl7SeAJIyWxKH2uvVPepcrLdLSX2LL6E77+NS jso4xh2CiyAVSkx5GQtczhbZvO/u5gDJjjfTazMJHetoKWl95ZV+THDkxQRGqw+r mq37Ya9M50KcJ/MXAYyFQo5kpKwYxUdOFssTd7Z3OP9fmvU8Y6hkr0eayidVVALc SB62HserFLkZvhaOcAxouhVTpkPB3Iaz38qSVMXJIQukASJK63wonjfGT2KitCwA 4WVxtKLfqjpELdoRehBcFqRdggREirkbETMhrq8I/LCw39kQz/u3+V3VKF5O9YDw SOUrVNezJBdo8u/KYH3EhB5DtBCUWCsKA33uWdyCpNS4s8thSkzwVOTcCaJjDpsI Zud/4q9RDn1CsoL8Qd5V/zwbPP8V3SxD+hOngCo67rZc1/wHaiSAVM+pTScAcWDs t9s6iaR5Muw= =oZGM -----END PGP SIGNATURE----- Tue Mar 30 22:06:43 UTC 2021 I: Checking whether the package is not for us Tue Mar 30 22:06:43 UTC 2021 I: Starting 1st build on remote node ionos5-amd64.debian.net. Tue Mar 30 22:06:43 UTC 2021 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Tue Mar 30 22:08:41 UTC 2021 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon May 2 16:29:49 -12 2022 I: pbuilder-time-stamp: 1651552189 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [plast_2.3.2+dfsg-1.dsc] I: copying [./plast_2.3.2+dfsg.orig.tar.xz] I: copying [./plast_2.3.2+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Jul 13 06:09:26 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./plast_2.3.2+dfsg-1.dsc dpkg-source: info: extracting plast in plast-2.3.2+dfsg dpkg-source: info: unpacking plast_2.3.2+dfsg.orig.tar.xz dpkg-source: info: unpacking plast_2.3.2+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_pcre.patch dpkg-source: info: applying adapt_auto_test_script.sh dpkg-source: info: applying no_msse3.patch dpkg-source: info: applying reproducible.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/23070/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='345df455851440d688741456b3fb22d5' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='23070' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.NIgU1Lz3e5/pbuilderrc_oVei --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.NIgU1Lz3e5/b1 --logfile b1/build.log plast_2.3.2+dfsg-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 5.10.0-0.bpo.3-amd64 #1 SMP Debian 5.10.13-1~bpo10+1 (2021-02-11) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Apr 23 02:46 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/23070/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), cmake, libpcre3-dev, default-jdk dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libpcre3-dev; however: Package libpcre3-dev is not installed. pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} ca-certificates-java{a} cmake{a} cmake-data{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} java-common{a} libarchive-zip-perl{a} libarchive13{a} libasound2{a} libasound2-data{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbsd0{a} libcroco3{a} libcups2{a} libcurl4{a} libdbus-1-3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgssapi-krb5-2{a} libicu63{a} libjpeg62-turbo{a} libjsoncpp1{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap-2.4-2{a} libldap-common{a} libllvm7{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libnspr4{a} libnss3{a} libpciaccess0{a} libpcre16-3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpcsclite1{a} libpipeline1{a} libpng16-16{a} libprocps7{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsigsegv2{a} libssh2-1{a} libssl1.1{a} libtool{a} libuchardet0{a} libuv1{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-sync1{a} libxcb1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxml2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} lsb-base{a} m4{a} man-db{a} openjdk-11-jdk{a} openjdk-11-jdk-headless{a} openjdk-11-jre{a} openjdk-11-jre-headless{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} ucf{a} x11-common{a} The following packages are RECOMMENDED but will NOT be installed: curl dbus fonts-dejavu-extra krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libsasl2-modules libxt-dev lynx psmisc publicsuffix shared-mime-info wget xdg-user-dirs 0 packages upgraded, 130 newly installed, 0 to remove and 0 not upgraded. Need to get 326 MB of archives. After unpacking 757 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 libprocps7 amd64 2:3.3.15-2 [61.7 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 procps amd64 2:3.3.15-2 [259 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u5 [1539 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1d-0+deb10u5 [844 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 java-common all 0.71 [14.4 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libavahi-common-data amd64 0.7-4+deb10u1 [122 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libavahi-common3 amd64 0.7-4+deb10u1 [54.4 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libdbus-1-3 amd64 1.12.20-0+deb10u1 [215 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 libavahi-client3 amd64 0.7-4+deb10u1 [58.2 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u1 [65.8 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u1 [122 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u1 [369 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u1 [158 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 libcups2 amd64 2.2.10-6+deb10u4 [324 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 liblcms2-2 amd64 2.9-3 [145 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u2 [380 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 libnspr4 amd64 2:4.20-1 [112 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 libnss3 amd64 2:3.42.1-1+deb10u3 [1159 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 libasound2-data all 1.1.8-1 [59.6 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 libasound2 amd64 1.1.8-1 [361 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 libpcsclite1 amd64 1.8.24-1 [58.5 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u1 [294 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u1 [757 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 x11-common all 1:7.7+19 [251 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 openjdk-11-jre-headless amd64 11.0.9.1+1-1~deb10u2 [37.7 MB] Get: 61 http://deb.debian.org/debian buster/main amd64 default-jre-headless amd64 2:1.11-71 [10.9 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 ca-certificates-java all 20190405 [15.7 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 cmake-data all 3.13.4-1 [1476 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u1 [689 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 libarchive13 amd64 3.3.3-4+deb10u1 [313 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u1 [69.1 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u1 [106 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u6 [90.0 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u6 [224 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 libcurl4 amd64 7.64.0-4+deb10u1 [331 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 librhash0 amd64 1.3.8-1 [122 kB] Get: 78 http://deb.debian.org/debian buster/main amd64 libuv1 amd64 1.24.1-1 [110 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 cmake amd64 3.13.4-1 [3480 kB] Get: 80 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 81 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 82 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 83 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 84 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 85 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 86 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 87 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u2 [1258 kB] Get: 88 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 89 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 90 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 91 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 92 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 93 http://deb.debian.org/debian buster/main amd64 libglvnd0 amd64 1.1.0-1 [48.6 kB] Get: 94 http://deb.debian.org/debian buster/main amd64 libdrm-common all 2.4.97-1 [13.8 kB] Get: 95 http://deb.debian.org/debian buster/main amd64 libdrm2 amd64 2.4.97-1 [39.7 kB] Get: 96 http://deb.debian.org/debian buster/main amd64 libglapi-mesa amd64 18.3.6-2+deb10u1 [66.3 kB] Get: 97 http://deb.debian.org/debian buster/main amd64 libx11-xcb1 amd64 2:1.6.7-1+deb10u1 [190 kB] Get: 98 http://deb.debian.org/debian buster/main amd64 libxcb-dri2-0 amd64 1.13.1-2 [101 kB] Get: 99 http://deb.debian.org/debian buster/main amd64 libxcb-dri3-0 amd64 1.13.1-2 [100 kB] Get: 100 http://deb.debian.org/debian buster/main amd64 libxcb-glx0 amd64 1.13.1-2 [116 kB] Get: 101 http://deb.debian.org/debian buster/main amd64 libxcb-present0 amd64 1.13.1-2 [99.1 kB] Get: 102 http://deb.debian.org/debian buster/main amd64 libxcb-sync1 amd64 1.13.1-2 [103 kB] Get: 103 http://deb.debian.org/debian buster/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get: 104 http://deb.debian.org/debian buster/main amd64 libxdamage1 amd64 1:1.1.4-3+b3 [14.9 kB] Get: 105 http://deb.debian.org/debian buster/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get: 106 http://deb.debian.org/debian buster/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get: 107 http://deb.debian.org/debian buster/main amd64 libdrm-amdgpu1 amd64 2.4.97-1 [27.3 kB] Get: 108 http://deb.debian.org/debian buster/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get: 109 http://deb.debian.org/debian buster/main amd64 libdrm-intel1 amd64 2.4.97-1 [69.8 kB] Get: 110 http://deb.debian.org/debian buster/main amd64 libdrm-nouveau2 amd64 2.4.97-1 [26.3 kB] Get: 111 http://deb.debian.org/debian buster/main amd64 libdrm-radeon1 amd64 2.4.97-1 [31.1 kB] Get: 112 http://deb.debian.org/debian buster/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get: 113 http://deb.debian.org/debian buster/main amd64 libllvm7 amd64 1:7.0.1-8+deb10u2 [13.1 MB] Get: 114 http://deb.debian.org/debian buster/main amd64 libsensors-config all 1:3.5.0-3 [31.6 kB] Get: 115 http://deb.debian.org/debian buster/main amd64 libsensors5 amd64 1:3.5.0-3 [52.6 kB] Get: 116 http://deb.debian.org/debian buster/main amd64 libgl1-mesa-dri amd64 18.3.6-2+deb10u1 [6685 kB] Get: 117 http://deb.debian.org/debian buster/main amd64 libglx-mesa0 amd64 18.3.6-2+deb10u1 [180 kB] Get: 118 http://deb.debian.org/debian buster/main amd64 libglx0 amd64 1.1.0-1 [30.0 kB] Get: 119 http://deb.debian.org/debian buster/main amd64 libgl1 amd64 1.1.0-1 [91.1 kB] Get: 120 http://deb.debian.org/debian buster/main amd64 libgif7 amd64 5.1.4-3 [43.3 kB] Get: 121 http://deb.debian.org/debian buster/main amd64 openjdk-11-jre amd64 11.0.9.1+1-1~deb10u2 [34.2 kB] Get: 122 http://deb.debian.org/debian buster/main amd64 default-jre amd64 2:1.11-71 [1044 B] Get: 123 http://deb.debian.org/debian buster/main amd64 openjdk-11-jdk-headless amd64 11.0.9.1+1-1~deb10u2 [229 MB] Get: 124 http://deb.debian.org/debian buster/main amd64 default-jdk-headless amd64 2:1.11-71 [1104 B] Get: 125 http://deb.debian.org/debian buster/main amd64 openjdk-11-jdk amd64 11.0.9.1+1-1~deb10u2 [13.5 kB] Get: 126 http://deb.debian.org/debian buster/main amd64 default-jdk amd64 2:1.11-71 [1056 B] Get: 127 http://deb.debian.org/debian buster/main amd64 libpcre16-3 amd64 2:8.39-12 [259 kB] Get: 128 http://deb.debian.org/debian buster/main amd64 libpcre32-3 amd64 2:8.39-12 [250 kB] Get: 129 http://deb.debian.org/debian buster/main amd64 libpcrecpp0v5 amd64 2:8.39-12 [152 kB] Get: 130 http://deb.debian.org/debian buster/main amd64 libpcre3-dev amd64 2:8.39-12 [650 kB] Fetched 326 MB in 5s (66.3 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3+deb10u1_amd64.deb ... Unpacking groff-base (1.22.4-3+deb10u1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../006-libncurses6_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package libprocps7:amd64. Preparing to unpack .../007-libprocps7_2%3a3.3.15-2_amd64.deb ... Unpacking libprocps7:amd64 (2:3.3.15-2) ... Selecting previously unselected package lsb-base. Preparing to unpack .../008-lsb-base_10.2019051400_all.deb ... Unpacking lsb-base (10.2019051400) ... Selecting previously unselected package procps. Preparing to unpack .../009-procps_2%3a3.3.15-2_amd64.deb ... Unpacking procps (2:3.3.15-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../010-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../011-libmagic-mgc_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../012-libmagic1_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4+deb10u2) ... Selecting previously unselected package file. Preparing to unpack .../013-file_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking file (1:5.35-4+deb10u2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../014-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package ucf. Preparing to unpack .../015-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../016-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../017-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../018-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../019-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../020-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../021-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../022-libssl1.1_1.1.1d-0+deb10u5_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1d-0+deb10u5) ... Selecting previously unselected package openssl. Preparing to unpack .../023-openssl_1.1.1d-0+deb10u5_amd64.deb ... Unpacking openssl (1.1.1d-0+deb10u5) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../024-ca-certificates_20200601~deb10u2_all.deb ... Unpacking ca-certificates (20200601~deb10u2) ... Selecting previously unselected package java-common. Preparing to unpack .../025-java-common_0.71_all.deb ... Unpacking java-common (0.71) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../026-libavahi-common-data_0.7-4+deb10u1_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.7-4+deb10u1) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../027-libavahi-common3_0.7-4+deb10u1_amd64.deb ... Unpacking libavahi-common3:amd64 (0.7-4+deb10u1) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../028-libdbus-1-3_1.12.20-0+deb10u1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.12.20-0+deb10u1) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../029-libavahi-client3_0.7-4+deb10u1_amd64.deb ... Unpacking libavahi-client3:amd64 (0.7-4+deb10u1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../030-libkeyutils1_1.6-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6-6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../031-libkrb5support0_1.17-3+deb10u1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.17-3+deb10u1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../032-libk5crypto3_1.17-3+deb10u1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.17-3+deb10u1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../033-libkrb5-3_1.17-3+deb10u1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.17-3+deb10u1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../034-libgssapi-krb5-2_1.17-3+deb10u1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.17-3+deb10u1) ... Selecting previously unselected package libcups2:amd64. Preparing to unpack .../035-libcups2_2.2.10-6+deb10u4_amd64.deb ... Unpacking libcups2:amd64 (2.2.10-6+deb10u4) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../036-liblcms2-2_2.9-3_amd64.deb ... Unpacking liblcms2-2:amd64 (2.9-3) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../037-libjpeg62-turbo_1%3a1.5.2-2+deb10u1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../038-libexpat1_2.2.6-2+deb10u1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.6-2+deb10u1) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../039-libpng16-16_1.6.36-6_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.36-6) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../040-libfreetype6_2.9.1-3+deb10u2_amd64.deb ... Unpacking libfreetype6:amd64 (2.9.1-3+deb10u2) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../041-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../042-fontconfig-config_2.13.1-2_all.deb ... Unpacking fontconfig-config (2.13.1-2) ... 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Setting up libnspr4:amd64 (2:4.20-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libavahi-common-data:amd64 (0.7-4+deb10u1) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libdbus-1-3:amd64 (1.12.20-0+deb10u1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libpng16-16:amd64 (1.6.36-6) ... Setting up libpcre32-3:amd64 (2:8.39-12) ... Setting up autopoint (0.19.8.1-9) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libpcsclite1:amd64 (1.8.24-1) ... Setting up libsensors5:amd64 (1:3.5.0-3) ... Setting up libk5crypto3:amd64 (1.17-3+deb10u1) ... Setting up libglapi-mesa:amd64 (18.3.6-2+deb10u1) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u1) ... Setting up libgif7:amd64 (5.1.4-3) ... Setting up sensible-utils (0.0.12) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up librhash0:amd64 (1.3.8-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libasound2:amd64 (1.1.8-1) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up cmake-data (3.13.4-1) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u1) ... Setting up openssl (1.1.1d-0+deb10u5) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libdrm-common (2.4.97-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libtool (2.4.6-9) ... Setting up libarchive13:amd64 (3.3.3-4+deb10u1) ... Setting up libpcre3-dev:amd64 (2:8.39-12) ... Setting up libxcb-glx0:amd64 (1.13.1-2) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up libavahi-common3:amd64 (0.7-4+deb10u1) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u6) ... Setting up m4 (1.4.18-2) ... Setting up libnss3:amd64 (2:3.42.1-1+deb10u3) ... Setting up libxcb-present0:amd64 (1.13.1-2) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 137 added, 0 removed; done. Setting up libfreetype6:amd64 (2.9.1-3+deb10u2) ... Setting up libxcb-sync1:amd64 (1.13.1-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u1) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up libxcb-dri2-0:amd64 (1.13.1-2) ... Setting up libdrm2:amd64 (2.4.97-1) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up libcurl4:amd64 (7.64.0-4+deb10u1) ... Setting up libllvm7:amd64 (1:7.0.1-8+deb10u2) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u1) ... Setting up libavahi-client3:amd64 (0.7-4+deb10u1) ... Setting up libdrm-amdgpu1:amd64 (2.4.97-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:amd64 (1.13.1-2) ... Setting up libdrm-nouveau2:amd64 (2.4.97-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libdrm-radeon1:amd64 (2.4.97-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libdrm-intel1:amd64 (2.4.97-1) ... Setting up libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up libcups2:amd64 (2.2.10-6+deb10u4) ... Setting up cmake (3.13.4-1) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up libxdamage1:amd64 (1:1.1.4-3+b3) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up po-debconf (1.0.21) ... Setting up libglx-mesa0:amd64 (18.3.6-2+deb10u1) ... Setting up libglx0:amd64 (1.1.0-1) ... Setting up libgl1:amd64 (1.1.0-1) ... Setting up ca-certificates-java (20190405) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Taiwan_GRCA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:LuxTrust_Global_Root_2.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:GTS_Root_R4.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R1.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DST_Root_CA_X3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Setting up default-jre-headless (2:1.11-71) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up debhelper (12.1.1) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Setting up openjdk-11-jre-headless:amd64 (11.0.9.1+1-1~deb10u2) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up openjdk-11-jre:amd64 (11.0.9.1+1-1~deb10u2) ... Setting up openjdk-11-jdk-headless:amd64 (11.0.9.1+1-1~deb10u2) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jaotc to provide /usr/bin/jaotc (jaotc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre (2:1.11-71) ... Setting up default-jdk-headless (2:1.11-71) ... Setting up openjdk-11-jdk:amd64 (11.0.9.1+1-1~deb10u2) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up default-jdk (2:1.11-71) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/plast-2.3.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package plast dpkg-buildpackage: info: source version 2.3.2+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules build dh build --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake dh_auto_configure -O--buildsystem=cmake cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found JNI: /usr/lib/jvm/default-java/lib/libjawt.so -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu dh_auto_build -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/plast-2.3.2+dfsg -B/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/CMakeFiles /build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/plast.dir/build.make CMakeFiles/plast.dir/depend make -f CMakeFiles/PlastLibrary.dir/build.make CMakeFiles/PlastLibrary.dir/depend make[3]: Entering directory '/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu' cd /build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plast-2.3.2+dfsg /build/plast-2.3.2+dfsg /build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu /build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu /build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/CMakeFiles/plast.dir/DependInfo.cmake --color= make[3]: Entering directory '/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu' cd /build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plast-2.3.2+dfsg /build/plast-2.3.2+dfsg /build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu /build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu /build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/CMakeFiles/PlastLibrary.dir/DependInfo.cmake --color= Scanning dependencies of target PlastLibrary make[3]: Leaving directory '/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/PlastLibrary.dir/build.make CMakeFiles/PlastLibrary.dir/build Scanning dependencies of target plast make[3]: Leaving 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-I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/algo/core/impl/ScoreMatrix.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/ScoreMatrix.cpp /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/algo/core/impl/DatabasesProvider.cpp.o -c /build/plast-2.3.2+dfsg/src/algo/core/impl/DatabasesProvider.cpp [ 5%] Building CXX object 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-I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/FilterContainerVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/FilterContainerVisitor.cpp [ 40%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedCachedSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BufferedCachedSequenceDatabase.cpp [ 40%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/MaxHitsPerQueryVisitor.cpp [ 40%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/BufferedSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BufferedSequenceDatabase.cpp [ 40%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/CompositeSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/CompositeSequenceDatabase.cpp [ 41%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/ModelBuilderVisitor.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/ModelBuilderVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/ModelBuilderVisitor.cpp [ 41%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/NucleotidConversionVisitor.cpp [ 41%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o [ 42%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/ReverseStrandVisitor.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/QueryReorderVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/QueryReorderVisitor.cpp /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/ReverseStrandVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/ReverseStrandVisitor.cpp [ 42%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/ShrinkContainerVisitor.cpp [ 43%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/DefaultAlphabet.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/DefaultAlphabet.cpp [ 43%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o [ 44%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/SortContainerVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/SortContainerVisitor.cpp /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp [ 45%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp [ 45%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp [ 45%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const string&)': /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (&magic, sizeof(u_int64_t), 1, file); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (&len, sizeof(size_t), 1, file); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (buffer, sizeof(char), len, file); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (&_totalSize, sizeof(u_int64_t), 1, file); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (&_dataSize, sizeof(u_int64_t), 1, file); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (&_nbSequences, sizeof(u_int32_t), 1, file); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (&_maxblocksize, sizeof(u_int64_t), 1, file); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (&nbOffsets, sizeof(size_t), 1, file); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (&offset, sizeof(u_int64_t), 1, file); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function 'static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)': /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 45%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/TabulatedOutputVisitor.cpp [ 46%] Building CXX object CMakeFiles/plast.dir/src/database/impl/AbstractSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/AbstractSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/AbstractSequenceIterator.cpp [ 46%] Building CXX object CMakeFiles/plast.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/alignment/visitors/impl/XmlOutputVisitor.cpp.o -c /build/plast-2.3.2+dfsg/src/alignment/visitors/impl/XmlOutputVisitor.cpp [ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp [ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp [ 47%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BasicSequenceBuilder.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BasicSequenceBuilder.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BasicSequenceBuilder.cpp [ 47%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/BlastdbAsn1HeaderDecoder.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/BlastdbAsn1HeaderDecoder.cpp [ 47%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/database/impl/Sequence.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/Sequence.cpp [ 48%] Building CXX object CMakeFiles/PlastLibrary.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux 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CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/designpattern/impl/CommandDispatcher.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/CommandDispatcher.cpp [ 49%] Building CXX object CMakeFiles/plast.dir/src/database/impl/BlastdbDatabaseQuickReader.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 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/build/plast-2.3.2+dfsg/src/index/impl/DatabaseIndex.cpp /build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp: In destructor 'dp::impl::SystemCommand::~SystemCommand()': /build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] system (tmp); ~~~~~~~^~~~~ [ 55%] Building CXX object CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseIndexHash.cpp 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-I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/core/PlastCmd.cpp /build/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:9: warning: 'get_bits_value' is static but used in inline function 'get_packed_value' which is not static return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); ^~~~~~~~~~~~~~ [ 57%] Building CXX object CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/DefaultAlphabet.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/DefaultAlphabet.cpp [ 57%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/core/PlastOptionsParser.cpp [ 57%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/FastaDatabaseQuickReader.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp [ 58%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Helper.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/Helper.cpp [ 59%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceIterator.cpp [ 59%] Building CXX object CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/FastaSequenceOutput.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/FastaSequenceOutput.cpp [ 59%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/Wrapper.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/Wrapper.cpp [ 59%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceDatabase.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceDatabase.cpp [ 60%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.cpp [ 60%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.cpp /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In member function 'virtual int database::impl::FastaDatabaseQuickReader::load(const string&)': /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:200:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (&magic, sizeof(u_int64_t), 1, file); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:211:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (&len, sizeof(size_t), 1, file); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:215:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (buffer, sizeof(char), len, file); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:231:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (&_totalSize, sizeof(u_int64_t), 1, file); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:234:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (&_dataSize, sizeof(u_int64_t), 1, file); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:237:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (&_nbSequences, sizeof(u_int32_t), 1, file); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:240:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (&_dbKind, sizeof(DatabaseKind_e), 1, file); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:243:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (&_maxblocksize, sizeof(u_int64_t), 1, file); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:247:15: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (&nbOffsets, sizeof(size_t), 1, file); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:253:19: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread (&offset, sizeof(u_int64_t), 1, file); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp: In static member function 'static bool database::impl::FastaDatabaseQuickReader::isQuickReaderFile(const string&)': /build/plast-2.3.2+dfsg/src/database/impl/FastaDatabaseQuickReader.cpp:373:37: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] u_int64_t magic = 0; fread (&magic, sizeof(u_int64_t), 1, file); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 61%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/ReadingFrameSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReadingFrameSequenceIterator.cpp [ 61%] Building CXX object CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/ReverseStrandSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/ReverseStrandSequenceIterator.cpp [ 61%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.cpp [ 62%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp [ 62%] Building CXX object CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/Sequence.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/Sequence.cpp [ 62%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp [ 63%] Building CXX object CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/SequenceTokenizer.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/SequenceTokenizer.cpp [ 63%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 63%] Building CXX object CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/database/impl/StringSequenceIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/database/impl/StringSequenceIterator.cpp [ 64%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp [ 64%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/CommandDispatcher.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/CommandDispatcher.cpp [ 65%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/ConfigFileProperties.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/ConfigFileProperties.cpp [ 65%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/DirectoryIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/DirectoryIterator.cpp [ 65%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoExecutionObserver.cpp [ 65%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/FileLineIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/FileLineIterator.cpp [ 66%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/Observer.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/Observer.cpp [ 66%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/Property.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/Property.cpp [ 66%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ [ 66%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp [ 67%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp [ 67%] Building CXX object CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp [ 68%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/SystemCommand.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp [ 68%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/TokenizerIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/TokenizerIterator.cpp [ 68%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/WrapperIterator.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/WrapperIterator.cpp [ 69%] Building CXX object CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/designpattern/impl/XmlReader.cpp.o -c /build/plast-2.3.2+dfsg/src/designpattern/impl/XmlReader.cpp [ 69%] Building CXX object CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/index/impl/AbstractDatabaseIndex.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/AbstractDatabaseIndex.cpp [ 69%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/index/impl/DatabaseIndex.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseIndex.cpp [ 70%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp /build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp: In destructor 'dp::impl::SystemCommand::~SystemCommand()': /build/plast-2.3.2+dfsg/src/designpattern/impl/SystemCommand.cpp:119:16: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] system (tmp); ~~~~~~~^~~~~ [ 71%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o [ 71%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/index/impl/DatabaseIndexHash.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseIndexHash.cpp /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In member function 'virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)': /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:29: warning: format '%lld' expects argument of type 'long long int', but argument 5 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:259:17: _nbAlignments - _lastNbAlign, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:29: warning: format '%lld' expects argument of type 'long long int', but argument 6 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:29: warning: format '%lld' expects argument of type 'long long int', but argument 11 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:29: warning: format '%lld' expects argument of type 'long long int', but argument 12 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] [ 71%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndex.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndex.cpp [ 71%] Building CXX object CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/index/impl/DatabaseNucleotidIndexOptim.cpp.o -c /build/plast-2.3.2+dfsg/src/index/impl/DatabaseNucleotidIndexOptim.cpp [ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp [ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp [ 72%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp [ 73%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp [ 74%] Building C object CMakeFiles/plast.dir/src/index/impl/retrievall.c.o /usr/bin/cc -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/index/impl/retrievall.c.o -c /build/plast-2.3.2+dfsg/src/index/impl/retrievall.c [ 74%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/core/PlastCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/core/PlastCmd.cpp /build/plast-2.3.2+dfsg/src/index/impl/retrievall.c:1075:9: warning: 'get_bits_value' is static but used in inline function 'get_packed_value' which is not static return get_bits_value(retr->packed_table,count,retr->vals_length,retr->bits_mask); ^~~~~~~~~~~~~~ [ 74%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp [ 74%] Building CXX object CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/core/PlastOptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/core/PlastOptionsParser.cpp [ 74%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()': /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] system (ss.str().c_str()); ~~~~~~~^~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp [ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/LinuxTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp [ 75%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsFile.cpp [ 76%] Building CXX object CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/os/impl/MacOsMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsMemory.cpp /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function 'virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()': /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets (buffer, sizeof(buffer), file); 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CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o /usr/bin/c++ -DPlastLibrary_EXPORTS -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/PlastLibrary.dir/src/tools/PlastCmd.cpp.o -c /build/plast-2.3.2+dfsg/src/tools/PlastCmd.cpp [ 85%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.cpp [ 85%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp [ 85%] Building CXX object CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.cpp [ 86%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AbstractProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AbstractProgressionObserver.cpp [ 86%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AlgoExecutionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoExecutionObserver.cpp [ 86%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AlgoHitsResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoHitsResultObserver.cpp [ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/AlgoResultObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/AlgoResultObserver.cpp [ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/BargraphObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/BargraphObserver.cpp [ 87%] Building CXX object CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/launcher/observers/FileProgressionObserver.cpp.o -c /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp [ 88%] Building CXX object CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/api/CompleteSubjectDatabaseStats.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/api/CompleteSubjectDatabaseStats.cpp /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp: In function 'jlong Java_org_inria_genscale_dbscan_impl_plast_RequestManager_createPeerRequest(JNIEnv*, jobject, jobject)': /build/plast-2.3.2+dfsg/src/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.cpp:316:1: warning: control reaches end of non-void function [-Wreturn-type] } ^ [ 88%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/ObsfucatedString.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/ObsfucatedString.cpp [ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/OptionsParser.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/OptionsParser.cpp [ 89%] Building CXX object CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/misc/impl/RangeTree.cpp.o -c /build/plast-2.3.2+dfsg/src/misc/impl/RangeTree.cpp [ 89%] Building CXX object CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/DefaultOsFactory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/DefaultOsFactory.cpp [ 90%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp [ 90%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp [ 90%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemoryFile.cpp [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxThread.cpp [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/LinuxTime.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/LinuxTime.cpp /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp: In destructor 'os::impl::LinuxFile::~LinuxFile()': /build/plast-2.3.2+dfsg/src/os/impl/LinuxFile.cpp:42:20: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] system (ss.str().c_str()); ~~~~~~~^~~~~~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp: In member function 'virtual void launcher::observers::ResourcesObserver::update(dp::EventInfo*, dp::ISubject*)': /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:29: warning: format '%lld' expects argument of type 'long long int', but argument 5 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] fprintf (_file, "%ld %.3f %lld %lld %.3f %.3f %.3f %d %lld %lld \n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:259:17: _nbAlignments - _lastNbAlign, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:29: warning: format '%lld' expects argument of type 'long long int', but argument 6 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:29: warning: format '%lld' expects argument of type 'long long int', but argument 11 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/plast-2.3.2+dfsg/src/launcher/observers/FileProgressionObserver.cpp:256:29: warning: format '%lld' expects argument of type 'long long int', but argument 12 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp: In member function 'virtual u_int32_t os::impl::LinuxMemoryAllocator::getMemUsage()': /build/plast-2.3.2+dfsg/src/os/impl/LinuxMemory.cpp:46:15: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fgets (buffer, sizeof(buffer), file); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 91%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/MacOsFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsFile.cpp [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/MacOsMemory.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsMemory.cpp [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/MacOsMemoryFile.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsMemoryFile.cpp [ 92%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o CMakeFiles/plast.dir/src/os/impl/MacOsThread.cpp.o -c /build/plast-2.3.2+dfsg/src/os/impl/MacOsThread.cpp [ 93%] Linking CXX shared library lib/None/libPlastLibrary.so /usr/bin/cmake -E cmake_link_script CMakeFiles/PlastLibrary.dir/link.txt --verbose=1 [ 94%] Building CXX object CMakeFiles/plast.dir/src/os/impl/MacOsTime.cpp.o /usr/bin/c++ -D__LINUX__ -I/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/include -I/usr/lib/jvm/default-java/include -I/usr/lib/jvm/default-java/include/linux -g -O2 -ffile-prefix-map=/build/plast-2.3.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -funroll-loops -fomit-frame-pointer -o 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CMakeFiles/plast.dir/src/os/impl/WindowsMemoryFile.cpp.o CMakeFiles/plast.dir/src/os/impl/WindowsThread.cpp.o CMakeFiles/plast.dir/src/os/impl/WindowsTime.cpp.o CMakeFiles/plast.dir/src/os/impl/ZlibFile.cpp.o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedIterator.cpp.o CMakeFiles/plast.dir/src/seed/impl/AbstractSeedModel.cpp.o CMakeFiles/plast.dir/src/seed/impl/BasicSeedModel.cpp.o CMakeFiles/plast.dir/src/seed/impl/SubSeedModel.cpp.o CMakeFiles/plast.dir/src/seg/impl/DustMasker.cpp.o CMakeFiles/plast.dir/src/seg/impl/dust.c.o CMakeFiles/plast.dir/src/seg/impl/genwin.c.o CMakeFiles/plast.dir/src/seg/impl/seg.c.o CMakeFiles/plast.dir/src/tools/PlastCmd.cpp.o -o bin/None/plast -lpthread -lpcre make[3]: Leaving directory '/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu' [100%] Built target plast make[2]: Leaving directory '/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/plast-2.3.2+dfsg' scripts/test-plast.sh Start PLAST... /build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/bin/None/plast -p plastp -i /build/plast-2.3.2+dfsg/db/query.fa -d /build/plast-2.3.2+dfsg/db/tursiops.fa -o /build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/bin/None/out.txt *** SUCCESS: result file is: /build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/bin/None/out.txt make[1]: Leaving directory '/build/plast-2.3.2+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --buildsystem=cmake dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_installdirs -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake cd obj-x86_64-linux-gnu && make -j16 install DESTDIR=/build/plast-2.3.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu' 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'/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu' cd /build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/plast-2.3.2+dfsg /build/plast-2.3.2+dfsg /build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu /build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu /build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu/CMakeFiles/plast.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/plast.dir/build.make CMakeFiles/plast.dir/build make[3]: Leaving directory '/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu' make -f CMakeFiles/PlastLibrary.dir/build.make CMakeFiles/PlastLibrary.dir/build make[3]: Entering directory '/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/PlastLibrary.dir/build'. make[3]: Leaving directory '/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu' [ 50%] Built target PlastLibrary make[3]: Entering directory '/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu' 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/build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/api/CompleteSubjectDatabaseStats.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/Option.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/OptionsParser.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/misc/impl/ObsfucatedString.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AbstractObserver.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/BargraphObserver.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoResultObserver.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AbstractProgressionObserver.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoExecutionObserver.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/FileProgressionObserver.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/observers/AlgoHitsResultObserver.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/JniObsfucation.h -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_Request.h -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_QueryResult.h -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestController.h -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestManager.h -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/Helper.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_RequestResult.h -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/Wrapper.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/jni/org_inria_genscale_dbscan_impl_plast_Hit.h -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core/PlastCmd.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/launcher/core/PlastOptionsParser.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/seed -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/seed/SeedHitIteratorCached.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/seed/SeedHitIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/HspExtensionCmd.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/AlignmentGeneratorCmd.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/hsp/HspGeneratorCmd.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIteratorSSE8.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/CompositionHitIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIteratorNull.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/SmallGapHitIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/gap/FullGapHitIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/api -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/api/IHitIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common/AbstractPipeHitIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/common/AbstractHitIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapExtendHitIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorSSE16.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorNull.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIteratorSSE8.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/hits/ungap/UngapHitIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/api -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/api/IStatistics.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/StatisticsPlastn.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/StatisticsSpouge.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/stats/impl/Statistics.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoConfig.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoEvents.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoEnvironment.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoParameters.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgorithm.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IScoreMatrix.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IAlgoIndexator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/api/IDatabasesProvider.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/ScoreMatrix.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DatabasesProvider.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/BasicAlgoIndexator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DefaultAlgoEnvironment.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/DefaultAlgoConfig.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AlgoIndexatorNucleotide.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/PlastnAlgoConfig.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AbstractAlgorithm.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/algo/core/impl/AlgorithmPlastn.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api/genwin.h -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/api/seg.h -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl/DustMasker.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/seg/impl/lnfac.pri -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/tools -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/Iterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/SmartPointer.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/ICommand.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/IObserver.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/api/IProperty.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/XmlReader.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/RangeIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ProductIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Observer.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/TokenizerIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/WrapperIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/EventCatch.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Property.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/DirectoryIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/Vectorterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/CommandDispatcher.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/SystemCommand.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/IteratorGet.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ConfigFileProperties.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/ListIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/designpattern/impl/FileLineIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/FilterContainerVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/RawOutputVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/TabulatedOutputVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/XmlOutputVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/CompareResultQryVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/SortContainerVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/OstreamVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/CompareContainerVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ReverseStrandVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/MaxHitsPerQueryVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/AdapterAlignmentVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/HierarchyAlignmentVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/NucleotidConversionVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ModifierContainerVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/CompareResultVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ShrinkContainerVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ModelBuilderVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/ProxyVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/visitors/impl/QueryReorderVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/api -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/api/IAlignmentFilter.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterOperator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterXML.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AlignmentFilterFactory.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/filter/impl/AbstractAlignmentFilterFactory.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/api -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/api/ISemiGappedAlign.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/api/IAlignmentSplitter.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/SemiGappedAlignTraceback.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentContainerShrinkCmd.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/SemiGappedAlign.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentOverlapCmd.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentSplitter.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/tools/impl/AlignmentSplitterBanded.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainer.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/Alignment.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerFactory.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerVisitor.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IHspContainer.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/api/IAlignmentContainerModel.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/ReaderAlignmentContainer.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/AbstractAlignmentContainer.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/AlignmentContainerFactory.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/NullAlignmentContainer.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/HspContainer.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/UngapAlignmentContainer.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/alignment/core/impl/BasicAlignmentContainer.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/api -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/api/IOccurrenceIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/api/IDatabaseIndex.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseNucleotidIndex.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseIndexHash.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/retrievall.h -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseIndex.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/DatabaseNucleotidIndexOptim.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/index/impl/AbstractDatabaseIndex.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IWord.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequence.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IAlphabet.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/IDatabaseQuickReader.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceBuilder.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceCache.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/api/ISequenceDatabase.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/DatabaseUtility.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BufferedCachedSequenceDatabase.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaDatabaseQuickReader.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/SequenceTokenizer.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbAsn1HeaderDecoder.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReverseStrandSequenceIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/DatabaseVisitorComment.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReadingFrameSequenceDatabase.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/StringSequenceIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/TruncatedSequenceIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BufferedSequenceDatabase.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaSequenceOutput.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/ReadingFrameSequenceIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/AbstractSequenceIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbFileIndexReader.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/AminoAcidDatabaseQuickReader.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbDatabaseQuickReader.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BlastdbSequenceIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/FastaSequenceIterator.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/CompositeSequenceDatabase.hpp -- Installing: /build/plast-2.3.2+dfsg/debian/tmp/usr/include/database/impl/BasicSequenceBuilder.hpp make[1]: Leaving directory '/build/plast-2.3.2+dfsg/obj-x86_64-linux-gnu' debian/rules override_dh_install-arch make[1]: Entering directory '/build/plast-2.3.2+dfsg' dh_install -a # install binary cp -a obj-x86_64-linux-gnu/bin/*/plast debian/plast/usr/lib/plast/bin # no need for the includes rm -rf debian/*/usr/include make[1]: Leaving directory '/build/plast-2.3.2+dfsg' dh_install -O--buildsystem=cmake -Nplast dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installinit -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_strip -O--buildsystem=cmake dh_makeshlibs -O--buildsystem=cmake dh_shlibdeps -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dpkg-gencontrol: warning: Depends field of package plast: substitution variable ${java:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package plast: substitution variable ${java:Depends} used, but is not defined dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'plast' in '../plast_2.3.2+dfsg-1_amd64.deb'. dpkg-deb: building package 'plast-example' in '../plast-example_2.3.2+dfsg-1_all.deb'. dpkg-deb: building package 'plast-dbgsym' in '../plast-dbgsym_2.3.2+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../plast_2.3.2+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/23070 and its subdirectories I: Current time: Mon May 2 16:31:45 -12 2022 I: pbuilder-time-stamp: 1651552305 Tue Mar 30 22:08:41 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Tue Mar 30 22:08:41 UTC 2021 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Tue Mar 30 22:19:22 UTC 2021 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Tue Mar 30 22:19:22 UTC 2021 I: plast_2.3.2+dfsg-1_amd64.changes: Format: 1.8 Date: Fri, 13 Jul 2018 19:20:45 +0200 Source: plast Binary: plast plast-dbgsym plast-example Architecture: amd64 all Version: 2.3.2+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: plast - Parallel Local Sequence Alignment Search Tool plast-example - Parallel Local Sequence Alignment Search Tool (example data) Changes: plast (2.3.2+dfsg-1) unstable; urgency=medium . * Point watch file to github * New upstream version * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.5 * Regard DEB_BUILD_OPTIONS in override_dh_auto_test * d/rules: Limit parsing d/changelog Checksums-Sha1: 272e0d71df1e5248a299fbc0171896e68ead9538 8238376 plast-dbgsym_2.3.2+dfsg-1_amd64.deb 162c9bb949606b1035b68f2921441bf6ac5a0caa 6363692 plast-example_2.3.2+dfsg-1_all.deb c15bd317becaf0da853212d9074c45cd3b59d245 8266 plast_2.3.2+dfsg-1_amd64.buildinfo 7a28fc93c2e14b89d2968fb697c4f1d04b2d3586 577116 plast_2.3.2+dfsg-1_amd64.deb Checksums-Sha256: 8d48b3974f0f9f022d638a7df7d609e6261b086d851eafd3e6b9c0e1b31563c6 8238376 plast-dbgsym_2.3.2+dfsg-1_amd64.deb 5d03cc73ee84e8732c5549b9d4eff43b760a26ea95da03fff72e1b6c85c001ee 6363692 plast-example_2.3.2+dfsg-1_all.deb c13f0974e953163b81b39fafa7a2dc1578e4c7fbb927cb09cb29df8d82476239 8266 plast_2.3.2+dfsg-1_amd64.buildinfo 33880f0d7d1d7478a7bd2e9539aa627d2a7635637d656e54b95db95fcebe2193 577116 plast_2.3.2+dfsg-1_amd64.deb Files: 05f10b8031dee12815ba94a0152bda24 8238376 debug optional plast-dbgsym_2.3.2+dfsg-1_amd64.deb e34b67d6c5c6ab38b1783458e22a91de 6363692 science optional plast-example_2.3.2+dfsg-1_all.deb 48a832c50b820442e499478fb3cb8f5a 8266 science optional plast_2.3.2+dfsg-1_amd64.buildinfo b10b57c744d1bfc5bd27cfd225a09dbd 577116 science optional plast_2.3.2+dfsg-1_amd64.deb Tue Mar 30 22:19:24 UTC 2021 I: diffoscope 170 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.NIgU1Lz3e5/plast_2.3.2+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.NIgU1Lz3e5/plast_2.3.2+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.NIgU1Lz3e5/plast_2.3.2+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.NIgU1Lz3e5/b1/plast_2.3.2+dfsg-1_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.NIgU1Lz3e5/b2/plast_2.3.2+dfsg-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.582s) 0.581s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.176s) 0.176s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Tue Mar 30 22:19:25 UTC 2021 I: diffoscope 170 found no differences in the changes files, and a .buildinfo file also exists. Tue Mar 30 22:19:26 UTC 2021 I: plast from buster built successfully and reproducibly on amd64. Tue Mar 30 22:19:27 UTC 2021 I: Submitting .buildinfo files to external archives: Tue Mar 30 22:19:27 UTC 2021 I: Submitting 12K b1/plast_2.3.2+dfsg-1_amd64.buildinfo.asc Tue Mar 30 22:19:28 UTC 2021 I: Submitting 12K b2/plast_2.3.2+dfsg-1_amd64.buildinfo.asc Tue Mar 30 22:19:29 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Mar 30 22:19:29 UTC 2021 I: Done submitting .buildinfo files. Tue Mar 30 22:19:29 UTC 2021 I: Removing signed plast_2.3.2+dfsg-1_amd64.buildinfo.asc files: removed './b1/plast_2.3.2+dfsg-1_amd64.buildinfo.asc' removed './b2/plast_2.3.2+dfsg-1_amd64.buildinfo.asc'