Tue Aug 10 13:21:49 UTC 2021 I: starting to build pbsuite/buster/amd64 on jenkins on '2021-08-10 13:21' Tue Aug 10 13:21:49 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_6/26152/console.log Tue Aug 10 13:21:49 UTC 2021 I: Downloading source for buster/pbsuite=15.8.24+dfsg-3 --2021-08-10 13:21:49-- http://deb.debian.org/debian/pool/main/p/pbsuite/pbsuite_15.8.24+dfsg-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2264 (2.2K) Saving to: ‘pbsuite_15.8.24+dfsg-3.dsc’ 0K .. 100% 95.4M=0s 2021-08-10 13:21:49 (95.4 MB/s) - ‘pbsuite_15.8.24+dfsg-3.dsc’ saved [2264/2264] Tue Aug 10 13:21:49 UTC 2021 I: pbsuite_15.8.24+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: pbsuite Binary: pbsuite, python-pbsuite-utils, pbjelly, pbhoney, python-pbbanana Architecture: all Version: 15.8.24+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Afif Elghraoui Homepage: http://sourceforge.net/projects/pb-jelly Standards-Version: 4.2.0 Vcs-Browser: https://salsa.debian.org/med-team/pbsuite Vcs-Git: https://salsa.debian.org/med-team/pbsuite.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~), dh-python, python-all Package-List: pbhoney deb science optional arch=all pbjelly deb science optional arch=all pbsuite deb metapackages optional arch=all python-pbbanana deb python optional arch=all python-pbsuite-utils deb python optional arch=all Checksums-Sha1: 83f478b44516f962d98520eba8109da904f84f11 1614912 pbsuite_15.8.24+dfsg.orig.tar.xz d62b26cb5923ec4c660cca0b69aa19669b0e64a0 10592 pbsuite_15.8.24+dfsg-3.debian.tar.xz Checksums-Sha256: f58813e9e3ed9e3f161de8460ed1e1d86be5a817cbeb0e041cc94cbd3e9e3aab 1614912 pbsuite_15.8.24+dfsg.orig.tar.xz 4595caaadd62b6bc9d87dac3dd100d9269e22e4296549e81003cec0611b30e56 10592 pbsuite_15.8.24+dfsg-3.debian.tar.xz Files: c6c55284fb59c4dce96fbc9c6d20fda3 1614912 pbsuite_15.8.24+dfsg.orig.tar.xz 9335d015079006c2c179b28b041fd192 10592 pbsuite_15.8.24+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlt22n0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFGog/9FwHW0YappcoxGNfNaN7TFQ0tERa2VrYn ElS7YmP8fBqxmajYs/T1DQv2rEBIJa9l+5YZZNkE1N6daZLJWKt4foafr7M5cQUe M5AlUw+u29ZIWtQLbrIE8wmg5crYp3/eOYxjo2ZNBDsBHGAAsUeVOmhrnFHO665F oU/wj+t+RSlpqNbl66gfZUkhoD0M2Z1e5tyB3ulPkMLEsvN6wlP6FWgnBn9P/1cQ V4Gh78HtXiLEKwU3vW+9azeBpqK+GIEUAL7uPXFh64NEon/zZRe5CPVTXUc1/kOO OB8PqS0NWWmUvCX1ZQfvh+Byy84Dle/bxxIy+JVsO/ZU2STZKxGg6L7lu5D/CLIY Ub0ZPiGWb3M5wvSFT4PSOK3qgZqJ6z8U+dyk4HdAaCnfuME+qpRoOQ6ZeptUHfLX 7uw6/ZoBim8JmanO2SVhaOwgEhTH4apFKiI5y7BPJ3aCxPBZ27i3372wuo18cf0V 9h9RT4pO1HK3s+gYRjeP71DSzw3TR+LTa9GhYmWmMNxlREp4rMeJFs3gc+Z/+FZF n948pfgnomIHkaYKvnhGpWgzuxAfItQE2e3gGzygcSmoU/TUKpZCKxF16siJYga0 ZEUnL2IvnGoGqZQ0+Lv7DQrpbBmutQtVjz5XzB+VkdvKKEuV0PW3mbhw6WYuqLBR udG1WjNGbWo= =+6Ka -----END PGP SIGNATURE----- Tue Aug 10 13:21:49 UTC 2021 I: Checking whether the package is not for us Tue Aug 10 13:21:49 UTC 2021 I: Starting 1st build on remote node ionos5-amd64.debian.net. Tue Aug 10 13:21:49 UTC 2021 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Tue Aug 10 13:23:01 UTC 2021 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Sep 12 07:44:51 -12 2022 I: pbuilder-time-stamp: 1663011891 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pbsuite_15.8.24+dfsg-3.dsc] I: copying [./pbsuite_15.8.24+dfsg.orig.tar.xz] I: copying [./pbsuite_15.8.24+dfsg-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Aug 17 02:23:57 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pbsuite_15.8.24+dfsg-3.dsc dpkg-source: info: extracting pbsuite in pbsuite-15.8.24+dfsg dpkg-source: info: unpacking pbsuite_15.8.24+dfsg.orig.tar.xz dpkg-source: info: unpacking pbsuite_15.8.24+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-syntax-error.patch dpkg-source: info: applying intervaltree-import-statement.patch dpkg-source: info: applying fix-example.patch dpkg-source: info: applying fix-shebang-lines.patch dpkg-source: info: applying blasr-5.patch dpkg-source: info: applying intermediate-reads-files.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/46235/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='b24d1f573e484e99857ba8c9f90d2e1f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='46235' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Rchbc1cmZU/pbuilderrc_a99L --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Rchbc1cmZU/b1 --logfile b1/build.log pbsuite_15.8.24+dfsg-3.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 5.10.0-0.bpo.8-amd64 #1 SMP Debian 5.10.46-2~bpo10+1 (2021-07-22) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 9 02:46 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/46235/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), dh-python, python-all dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python-all; however: Package python-all is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libpipeline1{a} libpython-stdlib{a} libpython2-stdlib{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python{a} python-all{a} python-minimal{a} python2{a} python2-minimal{a} python2.7{a} python2.7-minimal{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.7{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 60 newly installed, 0 to remove and 0 not upgraded. Need to get 30.0 MB of archives. After unpacking 116 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u1 [1369 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u6 [1539 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u1 [1912 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 python2.7 amd64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 python amd64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 dh-python all 3.20190308 [99.3 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 python-all amd64 2.7.16-1 [1044 B] Fetched 30.0 MB in 0s (66.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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No schema files found: doing nothing. Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up gettext (0.19.8.1-9) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python (2.7.16-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up po-debconf (1.0.21) ... Setting up python-all (2.7.16-1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up debhelper (12.1.1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/pbsuite-15.8.24+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package pbsuite dpkg-buildpackage: info: source version 15.8.24+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python2 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/pbsuite-15.8.24+dfsg' dh_auto_clean find -name "*.pyc" -delete make[1]: Leaving directory '/build/pbsuite-15.8.24+dfsg' dh_clean debian/rules build dh build --with python2 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/pbsuite-15.8.24+dfsg' dh_auto_build python -m compileall pbsuite Listing pbsuite ... Compiling pbsuite/__init__.py ... Listing pbsuite/banana ... Compiling pbsuite/banana/Banana.py ... Compiling pbsuite/banana/MakeOverlapTable.py ... Compiling pbsuite/banana/MakeReciprocal.py ... Compiling pbsuite/banana/OLCAssembly.py ... Compiling pbsuite/banana/Polish.py ... Compiling pbsuite/banana/SeqAsm.py ... Compiling pbsuite/banana/__init__.py ... Compiling pbsuite/banana/chunkyBlasr.py ... Listing pbsuite/honey ... Compiling pbsuite/honey/ComplexResolver.py ... Compiling pbsuite/honey/Force.py ... Compiling pbsuite/honey/HSpots.py ... Compiling pbsuite/honey/Honey.py ... Compiling pbsuite/honey/SVMachines.py ... Compiling pbsuite/honey/TGraf.py ... Compiling pbsuite/honey/Valid.py ... Compiling pbsuite/honey/__init__.py ... Compiling pbsuite/honey/bakH.py ... Compiling pbsuite/honey/bampie.py ... Compiling pbsuite/honey/massivePhrap.py ... Compiling pbsuite/honey/realign.py ... Compiling pbsuite/honey/recallSpots.py ... Compiling pbsuite/honey/spotH5Merge.py ... Compiling pbsuite/honey/spotH5dump.py ... Compiling pbsuite/honey/spotToBed.py ... Compiling pbsuite/honey/spotToVCF.py ... Listing pbsuite/honey/svm ... Listing pbsuite/honey/svm/ecoli_jul1.svm ... Listing pbsuite/honey/svm/ecoli_jul12.svm ... Listing pbsuite/jelly ... Compiling pbsuite/jelly/Assembly.py ... Compiling pbsuite/jelly/Collection.py ... Compiling pbsuite/jelly/Extraction.py ... Compiling pbsuite/jelly/GetSubs.py ... Compiling pbsuite/jelly/Jelly.py ... Compiling pbsuite/jelly/QFix.py ... Compiling pbsuite/jelly/Setup.py ... Compiling pbsuite/jelly/Stages.py ... Compiling pbsuite/jelly/Support.py ... Compiling pbsuite/jelly/__init__.py ... Compiling pbsuite/jelly/m4pie.py ... Listing pbsuite/utils ... Compiling pbsuite/utils/BamStat.py ... Compiling pbsuite/utils/BedIO.py ... Compiling pbsuite/utils/CommandRunner.py ... Compiling pbsuite/utils/FileHandlers.py ... Compiling pbsuite/utils/VCFIO.py ... Compiling pbsuite/utils/__init__.py ... Compiling pbsuite/utils/bamToFastq.py ... Compiling pbsuite/utils/blasrToBed.py ... Compiling pbsuite/utils/fakeQuals.py ... Compiling pbsuite/utils/fastqDivide.py ... Compiling pbsuite/utils/fastqSplit.py ... Compiling pbsuite/utils/jellyoutputrename.py ... Compiling pbsuite/utils/longCCSCombine.py ... Compiling pbsuite/utils/mapStats.py ... Compiling pbsuite/utils/mergeFaQu.py ... Compiling pbsuite/utils/quickN50.py ... Compiling pbsuite/utils/readSummary.py ... Compiling pbsuite/utils/setupLogging.py ... Compiling pbsuite/utils/summarizeAssembly.py ... Listing pbsuite/utils/vcfTemplates ... Compiling pbsuite/utils/vcfTemplates/spotToVCF.py ... make[1]: Leaving directory '/build/pbsuite-15.8.24+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python2 dh_testroot dh_prep debian/rules override_dh_install make[1]: Entering directory '/build/pbsuite-15.8.24+dfsg' dh_install -Xsam2bam -XsortChunks.sh make[1]: Leaving directory '/build/pbsuite-15.8.24+dfsg' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_python2 dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/pbsuite-15.8.24+dfsg' dh_fixperms find debian/ -name Valid.py -exec chmod -x {} + make[1]: Leaving directory '/build/pbsuite-15.8.24+dfsg' dh_missing dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package python-pbbanana: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-pbbanana: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package python-pbsuite-utils: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-pbsuite-utils: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package pbjelly: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package pbhoney: substitution variable ${python:Versions} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'pbsuite' in '../pbsuite_15.8.24+dfsg-3_all.deb'. dpkg-deb: building package 'python-pbsuite-utils' in '../python-pbsuite-utils_15.8.24+dfsg-3_all.deb'. dpkg-deb: building package 'pbjelly' in '../pbjelly_15.8.24+dfsg-3_all.deb'. dpkg-deb: building package 'pbhoney' in '../pbhoney_15.8.24+dfsg-3_all.deb'. dpkg-deb: building package 'python-pbbanana' in '../python-pbbanana_15.8.24+dfsg-3_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../pbsuite_15.8.24+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/46235 and its subdirectories I: Current time: Mon Sep 12 07:46:01 -12 2022 I: pbuilder-time-stamp: 1663011961 Tue Aug 10 13:23:01 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Tue Aug 10 13:23:01 UTC 2021 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Tue Aug 10 13:23:43 UTC 2021 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Tue Aug 10 13:23:43 UTC 2021 I: pbsuite_15.8.24+dfsg-3_amd64.changes: Format: 1.8 Date: Fri, 17 Aug 2018 16:17:04 +0200 Source: pbsuite Binary: pbhoney pbjelly pbsuite python-pbbanana python-pbsuite-utils Architecture: all Version: 15.8.24+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: pbhoney - genomic structural variation discovery pbjelly - genome assembly upgrading tool pbsuite - software for Pacific Biosciences sequencing data python-pbbanana - additional utilities for the pbsuite python-pbsuite-utils - software for Pacific Biosciences sequencing data -- Python utilit Changes: pbsuite (15.8.24+dfsg-3) unstable; urgency=medium . * Team upload. * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.0 Checksums-Sha1: 2b81aaeba195131dacb633a5813e895e23f507d1 1311064 pbhoney_15.8.24+dfsg-3_all.deb 3708b673cfa8d77bbb99852a247474161dd8d136 1210316 pbjelly_15.8.24+dfsg-3_all.deb 147b62585b2e67e1cec3c6c9b9d19e58cf382897 4904 pbsuite_15.8.24+dfsg-3_all.deb 75a56a3a6959b4c0c3d4c308193ce0066a07cc1f 6459 pbsuite_15.8.24+dfsg-3_amd64.buildinfo fa15c7e46f55c21dee42ba98c3943fa40672e5c0 19476 python-pbbanana_15.8.24+dfsg-3_all.deb dca8c7053250ea7455aaa02494697120c63bc90f 508232 python-pbsuite-utils_15.8.24+dfsg-3_all.deb Checksums-Sha256: 51c022bc960b8e967b4de16e94c26e6ecaaa8561ac3756ab7858250ea398f069 1311064 pbhoney_15.8.24+dfsg-3_all.deb 9d764876970088d89a435a761705a495f8d30f43ea0df266abe2070d390328f9 1210316 pbjelly_15.8.24+dfsg-3_all.deb 3340233651890500db98ca3337b16d328201ecbd4804340d63bdab4931248dd9 4904 pbsuite_15.8.24+dfsg-3_all.deb d889ee1c35acb3edea7383598c7bf90c80b0ca8a771f9afb60510f6900e69f3d 6459 pbsuite_15.8.24+dfsg-3_amd64.buildinfo d1daef26f55f5c5a5036e403487d4a26eb19727786bad8bf4fcb2067d1870699 19476 python-pbbanana_15.8.24+dfsg-3_all.deb 7b36b010fa3d93807601381da5554d3458de48781f15e21b76dbb9802e3cdce1 508232 python-pbsuite-utils_15.8.24+dfsg-3_all.deb Files: fccc6b34ce9a11f3acf2e79b8a9207d1 1311064 science optional pbhoney_15.8.24+dfsg-3_all.deb d1aafb0c91dd5c51aeff8d6f78b10de5 1210316 science optional pbjelly_15.8.24+dfsg-3_all.deb e4d7d1c6cebe3d220bd88630680e254c 4904 metapackages optional pbsuite_15.8.24+dfsg-3_all.deb e63341550776d82b40867820bcbf2e0a 6459 science optional pbsuite_15.8.24+dfsg-3_amd64.buildinfo 5c219a55c6a31ec95cef5fe1d682cf97 19476 python optional python-pbbanana_15.8.24+dfsg-3_all.deb 75167f74a49e0fc3c419ac59f5b84dbf 508232 python optional python-pbsuite-utils_15.8.24+dfsg-3_all.deb Tue Aug 10 13:23:44 UTC 2021 I: diffoscope 180 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.Rchbc1cmZU/pbsuite_15.8.24+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.Rchbc1cmZU/pbsuite_15.8.24+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.Rchbc1cmZU/pbsuite_15.8.24+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.Rchbc1cmZU/b1/pbsuite_15.8.24+dfsg-3_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.Rchbc1cmZU/b2/pbsuite_15.8.24+dfsg-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.346s) 0.346s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.053s) 0.053s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Tue Aug 10 13:23:46 UTC 2021 I: diffoscope 180 found no differences in the changes files, and a .buildinfo file also exists. Tue Aug 10 13:23:46 UTC 2021 I: pbsuite from buster built successfully and reproducibly on amd64. Tue Aug 10 13:23:48 UTC 2021 I: Submitting .buildinfo files to external archives: Tue Aug 10 13:23:48 UTC 2021 I: Submitting 8.0K b1/pbsuite_15.8.24+dfsg-3_amd64.buildinfo.asc Tue Aug 10 13:23:49 UTC 2021 I: Submitting 8.0K b2/pbsuite_15.8.24+dfsg-3_amd64.buildinfo.asc Tue Aug 10 13:23:50 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Aug 10 13:23:50 UTC 2021 I: Done submitting .buildinfo files. Tue Aug 10 13:23:50 UTC 2021 I: Removing signed pbsuite_15.8.24+dfsg-3_amd64.buildinfo.asc files: removed './b1/pbsuite_15.8.24+dfsg-3_amd64.buildinfo.asc' removed './b2/pbsuite_15.8.24+dfsg-3_amd64.buildinfo.asc'