Mon Aug 9 14:10:02 UTC 2021 I: starting to build nco/buster/amd64 on jenkins on '2021-08-09 14:09' Mon Aug 9 14:10:02 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_23/31208/console.log Mon Aug 9 14:10:02 UTC 2021 I: Downloading source for buster/nco=4.7.9-1 --2021-08-09 14:10:02-- http://deb.debian.org/debian/pool/main/n/nco/nco_4.7.9-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2052 (2.0K) Saving to: ‘nco_4.7.9-1.dsc’ 0K .. 100% 17.5M=0s 2021-08-09 14:10:02 (17.5 MB/s) - ‘nco_4.7.9-1.dsc’ saved [2052/2052] Mon Aug 9 14:10:02 UTC 2021 I: nco_4.7.9-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: nco Binary: nco Architecture: any Version: 4.7.9-1 Maintainer: Debian GIS Project Uploaders: Francesco Paolo Lovergine , Bas Couwenberg Homepage: http://nco.sourceforge.net/ Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/debian-gis-team/nco Vcs-Git: https://salsa.debian.org/debian-gis-team/nco.git Build-Depends: debhelper (>= 9), dh-autoreconf, autotools-dev, bison, flex, antlr, libantlr-dev, gsl-bin, libgsl-dev, netcdf-bin, libnetcdf-dev, libudunits2-dev, libdap-dev, texinfo Package-List: nco deb science optional arch=any Checksums-Sha1: a45fb9097078038842b64e3b85f5dd2f1fa2f275 5128336 nco_4.7.9.orig.tar.gz ae6c6f226c5de90d75ab7a76343e812465f83e89 12636 nco_4.7.9-1.debian.tar.xz Checksums-Sha256: 048f6298bceb40913c3ae433f875dea1e9129b1c86019128e7271d08f274a879 5128336 nco_4.7.9.orig.tar.gz ec527e4f9814aabf246e25b2342584aeff450d03edb07a90f55261f826f394c6 12636 nco_4.7.9-1.debian.tar.xz Files: 6ad3febf223f676ca9281c39c48fb9f3 5128336 nco_4.7.9.orig.tar.gz c9d6256500a76789465ed9585b3743a4 12636 nco_4.7.9-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEgYLeQXBWQI1hRlDRZ1DxCuiNSvEFAlxuQOUACgkQZ1DxCuiN SvEO3w//X38qKmr72VJYByHj7FyUxt7peg9UiN8Clc06rlQHIqSxaUiQjfK3sdTS sMr+mBHOaXCskU3d47hnvNW+Q5eD84VKfkVGmNuUKR50nzPsjoiIjVzDV6ZiV6/N /lTEcNROYymVeE2cGnx48SWDccneZSTWvo4D/zoKcYUPS5VB2qTL5l3bZWq/wUsZ a5CZ0avxpoqfhHclabMCP2EPuz6n1JbkaW3zOJoYJtYQR1ZOGJ1KnyrCYazFxBRY 58G4zOVYd+gFCermN3+bl5rua5bDQUZl/1pnqa3Ig6GY7pNBkqeLQq0XcS+KJXiK dUTJFUKBGo8qGRk1FNEjC6hG7fWsM1b4j7rwFVFFDk7E81Tr7ibSWuALWvP3GJSt 6WwonbuQ5jfSWlbXEOjE0LuAFvqIeFZyojeQK27h0RE8xWcUwKZA1d0Y2Q7FQQGA 7V6WaTN4aKE/Qxup9Y4P1dqd82aOqtzQ+QqVqU+Am1SEWx31CIX4tvpD3MtRw4nK ulU9RPVMQer39v1ZMv2fMKX+ui3KWnJl8C1OiR60uzu4VmD95nTgxs8PSCw3psAU x9BGU/5J7NNKysmtkR8gE4xwX+yAs4zCBS4Tkp6weAoITNx1USIPiDPERnxFl3nR GLwvDOLi6Kvj96QCq/QSckvsMs4wc47grzUKMogZm818pp/OfJU= =2wd5 -----END PGP SIGNATURE----- Mon Aug 9 14:10:02 UTC 2021 I: Checking whether the package is not for us Mon Aug 9 14:10:02 UTC 2021 I: Starting 1st build on remote node ionos11-amd64.debian.net. Mon Aug 9 14:10:02 UTC 2021 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Mon Aug 9 14:27:01 UTC 2021 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Aug 9 02:10:05 -12 2021 I: pbuilder-time-stamp: 1628518205 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [nco_4.7.9-1.dsc] I: copying [./nco_4.7.9.orig.tar.gz] I: copying [./nco_4.7.9-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Feb 20 18:10:45 2019 -12 gpgv: using RSA key 8182DE417056408D614650D16750F10AE88D4AF1 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./nco_4.7.9-1.dsc dpkg-source: info: extracting nco in nco-4.7.9 dpkg-source: info: unpacking nco_4.7.9.orig.tar.gz dpkg-source: info: unpacking nco_4.7.9-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/45161/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='9939e9ec0f544c04885811da303a1d65' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='45161' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.HkElpbzZXP/pbuilderrc_RAEH --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.HkElpbzZXP/b1 --logfile b1/build.log nco_4.7.9-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 6 20:24 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/45161/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 9), dh-autoreconf, autotools-dev, bison, flex, antlr, libantlr-dev, gsl-bin, libgsl-dev, netcdf-bin, libnetcdf-dev, libudunits2-dev, libdap-dev, texinfo dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 9); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-autoreconf; however: Package dh-autoreconf is not installed. pbuilder-satisfydepends-dummy depends on autotools-dev; however: Package autotools-dev is not installed. pbuilder-satisfydepends-dummy depends on bison; however: Package bison is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. pbuilder-satisfydepends-dummy depends on antlr; however: Package antlr is not installed. pbuilder-satisfydepends-dummy depends on libantlr-dev; however: Package libantlr-dev is not installed. pbuilder-satisfydepends-dummy depends on gsl-bin; however: Package gsl-bin is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on netcdf-bin; however: Package netcdf-bin is not installed. pbuilder-satisfydepends-dummy depends on libnetcdf-dev; however: Package libnetcdf-dev is not installed. pbuilder-satisfydepends-dummy depends on libudunits2-dev; however: Package libudunits2-dev is not installed. pbuilder-satisfydepends-dummy depends on libdap-dev; however: Package libdap-dev is not installed. pbuilder-satisfydepends-dummy depends on texinfo; however: Package texinfo is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: antlr{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bison{a} bsdmainutils{a} ca-certificates{a} ca-certificates-java{a} debhelper{a} default-jre-headless{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} flex{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} gsl-bin{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} java-common{a} libaec-dev{a} libaec0{a} libantlr-dev{a} libantlr-java{a} libarchive-zip-perl{a} libasound2{a} libasound2-data{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbison-dev{a} libbsd0{a} libcroco3{a} libcups2{a} libcurl3-gnutls{a} libcurl4-gnutls-dev{a} libdap-dev{a} libdap25{a} libdapclient6v5{a} libdapserver7v5{a} libdbus-1-3{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libgsl-dev{a} libgsl23{a} libgslcblas0{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhdf5-103{a} libhdf5-cpp-103{a} libhdf5-dev{a} libicu-dev{a} libicu63{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libldap-2.4-2{a} libldap-common{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnetcdf-dev{a} libnetcdf13{a} libnghttp2-14{a} libnspr4{a} libnss3{a} libpcsclite1{a} libpipeline1{a} libpng16-16{a} libpsl5{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libssl1.1{a} libsz2{a} libtext-unidecode-perl{a} libtool{a} libuchardet0{a} libudunits2-0{a} libudunits2-data{a} libudunits2-dev{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2{a} libxml2-dev{a} m4{a} man-db{a} netcdf-bin{a} openjdk-11-jre-headless{a} openssl{a} pkg-config{a} po-debconf{a} sensible-utils{a} tex-common{a} texinfo{a} ucf{a} uuid-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl dbus krb5-locales libarchive-cpio-perl libfl-dev libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libsasl2-modules libwww-perl libxml-sax-expat-perl lynx publicsuffix shared-mime-info wget xdg-user-dirs 0 packages upgraded, 119 newly installed, 0 to remove and 0 not upgraded. Need to get 92.7 MB of archives. After unpacking 378 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 flex amd64 2.6.4-6.2 [456 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 tex-common all 6.11 [53.1 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u6 [1539 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1d-0+deb10u6 [844 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 libnspr4 amd64 2:4.20-1 [112 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 libnss3 amd64 2:3.42.1-1+deb10u3 [1159 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 ca-certificates-java all 20190405 [15.7 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 java-common all 0.71 [14.4 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 libavahi-common-data amd64 0.7-4+deb10u1 [122 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libavahi-common3 amd64 0.7-4+deb10u1 [54.4 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libdbus-1-3 amd64 1.12.20-0+deb10u1 [215 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libavahi-client3 amd64 0.7-4+deb10u1 [58.2 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u1 [65.8 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u1 [122 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u1 [369 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u1 [158 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 libcups2 amd64 2.2.10-6+deb10u4 [324 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 liblcms2-2 amd64 2.9-3 [145 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u2 [380 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 libasound2-data all 1.1.8-1 [59.6 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 libasound2 amd64 1.1.8-1 [361 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 libpcsclite1 amd64 1.8.24-1 [58.5 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 openjdk-11-jre-headless amd64 11.0.11+9-1~deb10u1 [37.2 MB] Get: 49 http://deb.debian.org/debian buster/main amd64 default-jre-headless amd64 2:1.11-71 [10.9 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libantlr-java all 2.7.7+dfsg-9.2 [459 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 antlr all 2.7.7+dfsg-9.2 [13.9 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 libbison-dev amd64 2:3.3.2.dfsg-1 [500 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 bison amd64 2:3.3.2.dfsg-1 [871 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 libgslcblas0 amd64 2.5+dfsg-6 [101 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 libgsl23 amd64 2.5+dfsg-6 [880 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 gsl-bin amd64 2.5+dfsg-6 [29.5 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 hdf5-helpers amd64 1.10.4+repack-10 [35.2 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 icu-devtools amd64 63.1-6+deb10u1 [189 kB] Get: 78 http://deb.debian.org/debian buster/main amd64 libaec0 amd64 1.0.2-1 [20.1 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 libsz2 amd64 1.0.2-1 [6676 B] Get: 80 http://deb.debian.org/debian buster/main amd64 libaec-dev amd64 1.0.2-1 [18.4 kB] Get: 81 http://deb.debian.org/debian buster/main amd64 libantlr-dev amd64 2.7.7+dfsg-9.2 [181 kB] Get: 82 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u1 [69.1 kB] Get: 83 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u1 [106 kB] Get: 84 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u6 [90.0 kB] Get: 85 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u6 [224 kB] Get: 86 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get: 87 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get: 88 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get: 89 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get: 90 http://deb.debian.org/debian buster/main amd64 libcurl3-gnutls amd64 7.64.0-4+deb10u2 [330 kB] Get: 91 http://deb.debian.org/debian buster/main amd64 libcurl4-gnutls-dev amd64 7.64.0-4+deb10u2 [418 kB] Get: 92 http://deb.debian.org/debian buster/main amd64 libdap25 amd64 3.20.3-1 [557 kB] Get: 93 http://deb.debian.org/debian buster/main amd64 libdapserver7v5 amd64 3.20.3-1 [131 kB] Get: 94 http://deb.debian.org/debian buster/main amd64 libdapclient6v5 amd64 3.20.3-1 [202 kB] Get: 95 http://deb.debian.org/debian buster/main amd64 libicu-dev amd64 63.1-6+deb10u1 [9186 kB] Get: 96 http://deb.debian.org/debian buster/main amd64 libxml2-dev amd64 2.9.4+dfsg1-7+deb10u2 [784 kB] Get: 97 http://deb.debian.org/debian buster/main amd64 uuid-dev amd64 2.33.1-0.1 [93.6 kB] Get: 98 http://deb.debian.org/debian buster/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get: 99 http://deb.debian.org/debian buster/main amd64 libdap-dev amd64 3.20.3-1 [870 kB] Get: 100 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get: 101 http://deb.debian.org/debian buster/main amd64 libgsl-dev amd64 2.5+dfsg-6 [1063 kB] Get: 102 http://deb.debian.org/debian buster/main amd64 libhdf5-103 amd64 1.10.4+repack-10 [1325 kB] Get: 103 http://deb.debian.org/debian buster/main amd64 libhdf5-cpp-103 amd64 1.10.4+repack-10 [146 kB] Get: 104 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1 [214 kB] Get: 105 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo-dev amd64 1:1.5.2-2+deb10u1 [208 kB] Get: 106 http://deb.debian.org/debian buster/main amd64 libjpeg-dev all 1:1.5.2-2+deb10u1 [57.7 kB] Get: 107 http://deb.debian.org/debian buster/main amd64 libhdf5-dev amd64 1.10.4+repack-10 [2598 kB] Get: 108 http://deb.debian.org/debian buster/main amd64 libnetcdf13 amd64 1:4.6.2-1 [403 kB] Get: 109 http://deb.debian.org/debian buster/main amd64 libnetcdf-dev amd64 1:4.6.2-1 [82.7 kB] Get: 110 http://deb.debian.org/debian buster/main amd64 libtext-unidecode-perl all 1.30-1 [103 kB] Get: 111 http://deb.debian.org/debian buster/main amd64 libudunits2-data all 2.2.26-5 [25.8 kB] Get: 112 http://deb.debian.org/debian buster/main amd64 libudunits2-0 amd64 2.2.26-5 [56.7 kB] Get: 113 http://deb.debian.org/debian buster/main amd64 libudunits2-dev amd64 2.2.26-5 [370 kB] Get: 114 http://deb.debian.org/debian buster/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get: 115 http://deb.debian.org/debian buster/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get: 116 http://deb.debian.org/debian buster/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get: 117 http://deb.debian.org/debian buster/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get: 118 http://deb.debian.org/debian buster/main amd64 netcdf-bin amd64 1:4.6.2-1 [234 kB] Get: 119 http://deb.debian.org/debian buster/main amd64 texinfo amd64 6.5.0.dfsg.1-4+b1 [1431 kB] Fetched 92.7 MB in 6s (14.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3+deb10u1_amd64.deb ... Unpacking groff-base (1.22.4-3+deb10u1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../006-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../007-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package flex. Preparing to unpack .../008-flex_2.6.4-6.2_amd64.deb ... Unpacking flex (2.6.4-6.2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../009-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package ucf. Preparing to unpack .../010-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package tex-common. Preparing to unpack .../011-tex-common_6.11_all.deb ... Unpacking tex-common (6.11) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../012-libmagic-mgc_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../013-libmagic1_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4+deb10u2) ... Selecting previously unselected package file. Preparing to unpack .../014-file_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking file (1:5.35-4+deb10u2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../015-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../016-libssl1.1_1.1.1d-0+deb10u6_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1d-0+deb10u6) ... Selecting previously unselected package openssl. Preparing to unpack .../017-openssl_1.1.1d-0+deb10u6_amd64.deb ... Unpacking openssl (1.1.1d-0+deb10u6) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../018-ca-certificates_20200601~deb10u2_all.deb ... Unpacking ca-certificates (20200601~deb10u2) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../019-libnspr4_2%3a4.20-1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.20-1) ... Selecting previously unselected package libnss3:amd64. Preparing to unpack .../020-libnss3_2%3a3.42.1-1+deb10u3_amd64.deb ... Unpacking libnss3:amd64 (2:3.42.1-1+deb10u3) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../021-ca-certificates-java_20190405_all.deb ... Unpacking ca-certificates-java (20190405) ... Selecting previously unselected package java-common. Preparing to unpack .../022-java-common_0.71_all.deb ... Unpacking java-common (0.71) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../023-libavahi-common-data_0.7-4+deb10u1_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.7-4+deb10u1) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../024-libavahi-common3_0.7-4+deb10u1_amd64.deb ... Unpacking libavahi-common3:amd64 (0.7-4+deb10u1) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../025-libdbus-1-3_1.12.20-0+deb10u1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.12.20-0+deb10u1) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../026-libavahi-client3_0.7-4+deb10u1_amd64.deb ... Unpacking libavahi-client3:amd64 (0.7-4+deb10u1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../027-libkeyutils1_1.6-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6-6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../028-libkrb5support0_1.17-3+deb10u1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.17-3+deb10u1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../029-libk5crypto3_1.17-3+deb10u1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.17-3+deb10u1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../030-libkrb5-3_1.17-3+deb10u1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.17-3+deb10u1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../031-libgssapi-krb5-2_1.17-3+deb10u1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.17-3+deb10u1) ... Selecting previously unselected package libcups2:amd64. Preparing to unpack .../032-libcups2_2.2.10-6+deb10u4_amd64.deb ... Unpacking libcups2:amd64 (2.2.10-6+deb10u4) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../033-liblcms2-2_2.9-3_amd64.deb ... Unpacking liblcms2-2:amd64 (2.9-3) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../034-libjpeg62-turbo_1%3a1.5.2-2+deb10u1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../035-libexpat1_2.2.6-2+deb10u1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.6-2+deb10u1) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../036-libpng16-16_1.6.36-6_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.36-6) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../037-libfreetype6_2.9.1-3+deb10u2_amd64.deb ... Unpacking libfreetype6:amd64 (2.9.1-3+deb10u2) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../038-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../039-fontconfig-config_2.13.1-2_all.deb ... Unpacking fontconfig-config (2.13.1-2) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../040-libfontconfig1_2.13.1-2_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-2) ... Selecting previously unselected package libasound2-data. Preparing to unpack .../041-libasound2-data_1.1.8-1_all.deb ... Unpacking libasound2-data (1.1.8-1) ... Selecting previously unselected package libasound2:amd64. Preparing to unpack .../042-libasound2_1.1.8-1_amd64.deb ... Unpacking libasound2:amd64 (1.1.8-1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../043-libglib2.0-0_2.58.3-2+deb10u3_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../044-libgraphite2-3_1.3.13-7_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.13-7) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../045-libharfbuzz0b_2.3.1-1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (2.3.1-1) ... Selecting previously unselected package libpcsclite1:amd64. Preparing to unpack .../046-libpcsclite1_1.8.24-1_amd64.deb ... Unpacking libpcsclite1:amd64 (1.8.24-1) ... Selecting previously unselected package openjdk-11-jre-headless:amd64. Preparing to unpack .../047-openjdk-11-jre-headless_11.0.11+9-1~deb10u1_amd64.deb ... Unpacking openjdk-11-jre-headless:amd64 (11.0.11+9-1~deb10u1) ... Selecting previously unselected package default-jre-headless. Preparing to unpack .../048-default-jre-headless_2%3a1.11-71_amd64.deb ... Unpacking default-jre-headless (2:1.11-71) ... Selecting previously unselected package libantlr-java. Preparing to unpack .../049-libantlr-java_2.7.7+dfsg-9.2_all.deb ... Unpacking libantlr-java (2.7.7+dfsg-9.2) ... Selecting previously unselected package antlr. Preparing to unpack .../050-antlr_2.7.7+dfsg-9.2_all.deb ... Unpacking antlr (2.7.7+dfsg-9.2) ... Selecting previously unselected package autoconf. Preparing to unpack .../051-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../052-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../053-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. 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Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1d-0+deb10u6) ... Setting up libantlr-dev (2.7.7+dfsg-9.2) ... Setting up libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u6) ... Setting up libaec0:amd64 (1.0.2-1) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up libkrb5support0:amd64 (1.17-3+deb10u1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u1) ... Setting up libasound2-data (1.1.8-1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up autotools-dev (20180224.1) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.5.2-2+deb10u1) ... Setting up libnspr4:amd64 (2:4.20-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libgsl23:amd64 (2.5+dfsg-6) ... Setting up uuid-dev:amd64 (2.33.1-0.1) ... Setting up libavahi-common-data:amd64 (0.7-4+deb10u1) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libdbus-1-3:amd64 (1.12.20-0+deb10u1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libpng16-16:amd64 (1.6.36-6) ... Setting up autopoint (0.19.8.1-9) ... Setting up icu-devtools (63.1-6+deb10u1) ... Setting up pkg-config (0.29-6) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libpcsclite1:amd64 (1.8.24-1) ... Setting up libk5crypto3:amd64 (1.17-3+deb10u1) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u1) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1) ... Setting up libudunits2-data (2.2.26-5) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libasound2:amd64 (1.1.8-1) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u1) ... Setting up gsl-bin (2.5+dfsg-6) ... Setting up libtext-unidecode-perl (1.30-1) ... Setting up libantlr-java (2.7.7+dfsg-9.2) ... Setting up openssl (1.1.1d-0+deb10u6) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libicu-dev:amd64 (63.1-6+deb10u1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Setting up libsz2:amd64 (1.0.2-1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libudunits2-0:amd64 (2.2.26-5) ... Setting up libgsl-dev (2.5+dfsg-6) ... Setting up libtool (2.4.6-9) ... Setting up libudunits2-dev:amd64 (2.2.26-5) ... Setting up libaec-dev:amd64 (1.0.2-1) ... Setting up libavahi-common3:amd64 (0.7-4+deb10u1) ... Setting up libjpeg-dev (1:1.5.2-2+deb10u1) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u6) ... Setting up m4 (1.4.18-2) ... Setting up libdap25:amd64 (3.20.3-1) ... Setting up libnss3:amd64 (2:3.42.1-1+deb10u3) ... Setting up libdapserver7v5:amd64 (3.20.3-1) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 137 added, 0 removed; done. Setting up libxml2-dev:amd64 (2.9.4+dfsg1-7+deb10u2) ... Setting up libfreetype6:amd64 (2.9.1-3+deb10u2) ... Setting up libhdf5-103:amd64 (1.10.4+repack-10) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u1) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up bison (2:3.3.2.dfsg-1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up libavahi-client3:amd64 (0.7-4+deb10u1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up flex (2.6.4-6.2) ... Setting up gettext (0.19.8.1-9) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libhdf5-cpp-103:amd64 (1.10.4+repack-10) ... Setting up libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Setting up libnetcdf13:amd64 (1:4.6.2-1) ... Setting up libcurl4-gnutls-dev:amd64 (7.64.0-4+deb10u2) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up netcdf-bin (1:4.6.2-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up tex-common (6.11) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libhdf5-dev (1.10.4+repack-10) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnetcdf-dev (1:4.6.2-1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libcups2:amd64 (2.2.10-6+deb10u4) ... Setting up libdapclient6v5:amd64 (3.20.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up libdap-dev:amd64 (3.20.3-1) ... Setting up po-debconf (1.0.21) ... Setting up texinfo (6.5.0.dfsg.1-4+b1) ... Setting up default-jre-headless (2:1.11-71) ... Setting up openjdk-11-jre-headless:amd64 (11.0.11+9-1~deb10u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up antlr (2.7.7+dfsg-9.2) ... Setting up dh-autoreconf (19) ... Setting up ca-certificates-java (20190405) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Taiwan_GRCA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:LuxTrust_Global_Root_2.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:GTS_Root_R4.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R1.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DST_Root_CA_X3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Setting up debhelper (12.1.1) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/nco-4.7.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package nco dpkg-buildpackage: info: source version 4.7.9-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Bas Couwenberg dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with autoreconf \ --buildsystem autoconf \ --parallel dh_auto_clean -O--buildsystem=autoconf -O--parallel dh_autoreconf_clean -O--buildsystem=autoconf -O--parallel debian/rules override_dh_clean make[1]: Entering directory '/build/nco-4.7.9' dh_clean data/big.nc \ data/in_1.nc \ data/in_2.nc \ data/nco_bm.stderr \ debian/rules.old \ doc/nco.info \ doc/nco.info-1 \ doc/nco.info-2 \ doc/nco.info-3 make[1]: Leaving directory '/build/nco-4.7.9' debian/rules build dh build --with autoreconf \ --buildsystem autoconf \ --parallel dh_update_autotools_config -O--buildsystem=autoconf -O--parallel dh_autoreconf -O--buildsystem=autoconf -O--parallel libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'autobld'. libtoolize: copying file 'autobld/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:175: installing 'autobld/compile' configure.ac:161: installing 'autobld/missing' src/nco++/Makefile.am: installing 'autobld/depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/build/nco-4.7.9' dh_auto_configure -- \ --libdir=/usr/lib/nco \ --disable-nco_cplusplus \ --disable-static \ --disable-udunits \ --enable-dap \ --enable-gsl \ --enable-ncap2 \ --enable-netcdf4 \ --enable-udunits2 ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --disable-maintainer-mode --disable-dependency-tracking --libdir=/usr/lib/nco --disable-nco_cplusplus --disable-static --disable-udunits --enable-dap --enable-gsl --enable-ncap2 --enable-netcdf4 --enable-udunits2 checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu ./configure: line 3015: git: command not found checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to run the C preprocessor... gcc -E checking how to run the C++ preprocessor... g++ -E checking for gcc option to accept ISO C99... none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking for flex... flex checking lex output file root... lex.yy checking lex library... none needed checking whether yytext is a pointer... no checking whether ln -s works... yes checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... no checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether to enable maintainer-specific portions of Makefiles... no checking for working memcmp... yes checking whether lstat correctly handles trailing slash... yes checking whether stat accepts an empty string... no checking for working strtod... yes checking for canonicalize_file_name... yes checking for floor... no checking for gethostname... yes checking for getpagesize... yes checking for getrusage... yes checking for memchr... yes checking for memmove... yes checking for memset... yes checking for mkstemp... yes checking for pow... no checking for readlink... yes checking for realpath... yes checking for regcomp... yes checking for setlocale... yes checking for sqrt... no checking for strchr... yes checking for strerror... yes checking for strpbrk... yes checking for strrchr... yes checking for strstr... yes checking for strtol... yes checking for ANSI C header files... (cached) yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking libintl.h usability... yes checking libintl.h presence... yes checking for libintl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for unistd.h... (cached) yes checking cstdlib usability... yes checking cstdlib presence... yes checking for cstdlib... yes checking for an ANSI C-conforming const... yes checking for inline... inline checking for pid_t... yes checking for size_t... yes checking whether struct tm is in sys/time.h or time.h... time.h checking for uid_t in sys/types.h... yes checking for ptrdiff_t... yes checking size of int*... 8 checking whether C++ compiler implements namespaces... yes checking whether C++ compiler has working valarray... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no ################################# # Test for netCDF # ################################ checking netcdf.h usability... yes checking netcdf.h presence... yes checking for netcdf.h... yes checking for nc_open in -lnetcdf... yes ################################# # Test for netCDF4 support # ################################# checking whether NC_CHUNKED is declared... yes configure: netcdf.h contains netCDF4 definitions checking for nc_def_var_chunking in -lnetcdf... yes configure: Good news: Simple program compiles and links to netCDF4 library checking netcdf_mem.h usability... no checking netcdf_mem.h presence... yes configure: WARNING: netcdf_mem.h: present but cannot be compiled configure: WARNING: netcdf_mem.h: check for missing prerequisite headers? configure: WARNING: netcdf_mem.h: see the Autoconf documentation configure: WARNING: netcdf_mem.h: section "Present But Cannot Be Compiled" configure: WARNING: netcdf_mem.h: proceeding with the compiler's result configure: WARNING: ## --------------------------------------------- ## configure: WARNING: ## Report this to nco-bugs@lists.sourceforge.net ## configure: WARNING: ## --------------------------------------------- ## checking for netcdf_mem.h... no checking for gcc option to support OpenMP... -fopenmp configure: OpenMP support enabled Beginning generic tests for DAP support Testing for DAP-netCDF support (is DAP in libnetcdf.a?)... checking for daperror in -lnetcdf... yes configure: DAP support enabled checking for getopt_long... yes checking for _g95_ac_array in -lf95... no checking for sin in -lm... yes checking for sinf in -lsunmath... no checking for gettext in -lintl... no checking for res_init in -lresolv... no checking for main in -lsocket... no checking for main in -lthread... no checking for nco_open in -lnco... no checking for nc_inq_format... yes checking for nc_inq_path... yes checking for nc_set_log_level... yes checking for nc_rename_grp... yes checking for getopt... yes checking for getopt_long... (cached) yes checking for atan2... yes checking for acosf... yes checking for asinf... yes checking for atanf... yes checking for atan2f... yes checking for cosf... yes checking for expf... yes checking for fabsf... yes checking for fmodf... yes checking for log10f... yes checking for logf... yes checking for powf... yes checking for sinf... yes checking for sqrtf... yes checking for tanf... yes checking for erff... yes checking for erfcf... yes checking for gammaf... yes checking for acoshf... yes checking for asinhf... yes checking for atanhf... yes checking for coshf... yes checking for sinhf... yes checking for tanhf... yes checking for ceilf... yes checking for floorf... yes checking for nearbyint... yes checking for rint... yes checking for round... yes checking for trunc... yes checking for nearbyintf... yes checking for rintf... yes checking for roundf... yes checking for truncf... yes checking for getopt_long... (cached) yes checking for strdup... yes checking for strcasecmp... yes checking for strsep... yes checking for strcasestr... yes checking for htonl... yes checking for htons... yes checking for ntohl... yes checking for ntohs... yes checking for __builtin_bswap16... no checking for __builtin_bswap32... no checking for __builtin_bswap64... no ########################################################## # Sorting out MacOSX build parameters # ########################################################## ################################# # Testing for ANTLR support # ################################# checking for runantlr... runantlr configure: antlr library was found ################################################## # Testing for ESMF support (only for developers) # ################################################## ######################################## # Testing for GSL support # ######################################## configure: These GSL library and header tests must succeed for GSL support: checking for gsl_sf_gamma_inc in -lgsl... yes checking for /usr/include/gsl/gsl_sf_gamma.h... yes configure: GSL support enabled checking regex.h usability... yes checking regex.h presence... yes checking for regex.h... yes checking for sys/types.h... (cached) yes checking for regexec... yes checking for regcomp... (cached) yes checking for regfree... yes ######################################## # Testing for UDUNITS support # ######################################## checking for XML_ParserCreate in -lexpat... no checking for /usr/include/udunits2/udunits2.h... no checking for /usr/include/udunits2.h... yes checking for /usr/lib/x86_64-linux-gnu/libudunits2.a... yes checking for /usr/lib/i386-linux-gnu/libudunits2.a... no checking for /opt/local/include/udunits2/udunits2.h... no checking for /opt/local/lib/libudunits2.a... no checking for ... no configure: WARNING: file was not found but will still attempt to build NCO with UDUnits2 support. configure: NB: Following tests of UDUnits2 library and header must succeed for UDUnits2 support: checking for ut_read_xml in -ludunits2... yes checking udunits2.h usability... yes checking udunits2.h presence... yes checking for udunits2.h... yes configure: UDUnits2 support enabled checking for ncgen... /usr/bin/ncgen configure: Creating sample netCDF data files for self-tests ############################### # Require Shared Libs? # ############################### checking for makeinfo... yes MAKEINFO_VERSION=6.5 configure: Documentation support enabled checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating data/Makefile config.status: creating src/Makefile config.status: creating src/nco/Makefile config.status: creating man/Makefile config.status: creating src/nco++/Makefile config.status: creating doc/Makefile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands Configuration Parameters: AR_FLAGS............. cru CC................... gcc CFLAGS............... -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE CPP.................. gcc -E CPPFLAGS............. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include CXX.................. g++ CXXFLAGS............. -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security ENABLE_DAP........... yes ENABLE_ESMF...........no ENABLE_GSL........... yes ENABLE_LOGGING....... ENABLE_NETCDF4....... yes ENABLE_OPENMP........ yes ENABLE_UDUNITS....... no ENABLE_UDUNITS2...... yes GSL_ROOT............. /usr HAVE_ANTLR........... runantlr HAVE_MAKEINFO........ yes HAVE_NETCDF4_H....... yes HOST................. HOSTNAME............. ionos11-amd64 LDFLAGS.............. -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl -lm -lcurl -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu LIBS................. -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 NETCDF_ROOT.......... /usr OPENMP_CFLAGS........ -fopenmp host................. x86_64-pc-linux-gnu install prefix ...... /usr ******************************************************************* Configuration complete. You are now ready to run 'make'. Ensure 'make' points to GNU Make (AT&T Make chokes on GNU syntax). If the build fails, please examine the file 'configure.eg' in the top-level NCO directory. It contains examples known to build NCO for various platforms and compilers. ******************************************************************* make[1]: Leaving directory '/build/nco-4.7.9' debian/rules override_dh_auto_build make[1]: Entering directory '/build/nco-4.7.9' dh_auto_build make -j15 make[2]: Entering directory '/build/nco-4.7.9' make all-recursive make[3]: Entering directory '/build/nco-4.7.9' Making all in data make[4]: Entering directory '/build/nco-4.7.9/data' /usr/bin/ncgen -o big.nc big.cdl /usr/bin/ncgen -o in_rec_zero.nc in_rec_zero.cdl /build/nco-4.7.9/src/nco/ncks -O -7 --cnk_dmn time,10 in.nc in_4c.nc /bin/bash: /build/nco-4.7.9/src/nco/ncks: No such file or directory make[4]: [Makefile:583: in_4c.nc] Error 127 (ignored) /usr/bin/ncgen -k netCDF-4 -o in_4.nc in.cdl /usr/bin/ncgen -k netCDF-4 -o in_grp_8.nc in_grp_8.cdl /usr/bin/ncgen -k netCDF-4 -o hdn.nc hdn.cdl /usr/bin/ncgen -k netCDF-4 -o mrd.nc mrd.cdl /usr/bin/ncgen -k netCDF-4 -o split.nc split.cdl /usr/bin/ncgen -k netCDF-4 -o ref_utf8.nc ref_utf8.cdl make[4]: Leaving directory '/build/nco-4.7.9/data' Making all in src make[4]: Entering directory '/build/nco-4.7.9/src' Making all in nco make[5]: Entering directory '/build/nco-4.7.9/src/nco' gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncatted.o ncatted.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_att_utl.lo nco_att_utl.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_aux.lo nco_aux.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_bnr.lo nco_bnr.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cln_utl.lo nco_cln_utl.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnf_dmn.lo nco_cnf_dmn.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnf_typ.lo nco_cnf_typ.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnk.lo nco_cnk.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from ncatted.c:104: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnv_arm.lo nco_cnv_arm.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_cnv_csm.lo nco_cnv_csm.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_ctl.lo nco_ctl.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_dbg.lo nco_dbg.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_dmn_utl.lo nco_dmn_utl.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_fl_utl.lo nco_fl_utl.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_grp_utl.lo nco_grp_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnf_dmn.c -fPIC -DPIC -o .libs/nco_cnf_dmn.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnf_typ.c -fPIC -DPIC -o .libs/nco_cnf_typ.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnk.c -fPIC -DPIC -o .libs/nco_cnk.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_cnf_dmn.h:17, from nco_cnf_dmn.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_att_utl.c -fPIC -DPIC -o .libs/nco_att_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_bnr.c -fPIC -DPIC -o .libs/nco_bnr.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_grp_utl.c -fPIC -DPIC -o .libs/nco_grp_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_dmn_utl.c -fPIC -DPIC -o .libs/nco_dmn_utl.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_cnk.h:17, from nco_cnk.c:45: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_cnf_typ.h:17, from nco_cnf_typ.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_bnr.h:17, from nco_bnr.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnv_arm.c -fPIC -DPIC -o .libs/nco_cnv_arm.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_att_utl.h:21, from nco_att_utl.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_fl_utl.c -fPIC -DPIC -o .libs/nco_fl_utl.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_dmn_utl.h:21, from nco_dmn_utl.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_aux.c -fPIC -DPIC -o .libs/nco_aux.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cln_utl.c -fPIC -DPIC -o .libs/nco_cln_utl.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_cnv_arm.h:17, from nco_cnv_arm.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/assert.h:35, from nco_grp_utl.h:21, from nco_grp_utl.c:19: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/errno.h:25, from nco_fl_utl.h:21, from nco_fl_utl.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_cnv_csm.c -fPIC -DPIC -o .libs/nco_cnv_csm.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ctl.c -fPIC -DPIC -o .libs/nco_ctl.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_aux.h:17, from nco_aux.c:22: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/ctype.h:25, from nco_cln_utl.h:21, from nco_cln_utl.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_dbg.c -fPIC -DPIC -o .libs/nco_dbg.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_cnv_csm.h:17, from nco_cnv_csm.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_ctl.h:21, from nco_ctl.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_dbg.h:17, from nco_dbg.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_grp_trv.lo nco_grp_trv.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_lmt.lo nco_lmt.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_lst_utl.lo nco_lst_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_grp_trv.c -fPIC -DPIC -o .libs/nco_grp_trv.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_map.lo nco_map.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_grp_trv.h:21, from nco_grp_trv.c:14: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_lmt.c -fPIC -DPIC -o .libs/nco_lmt.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_lst_utl.c -fPIC -DPIC -o .libs/nco_lst_utl.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_lst_utl.h:21, from nco_lst_utl.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_lmt.h:21, from nco_lmt.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_map.c -fPIC -DPIC -o .libs/nco_map.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from nco_map.h:17, from nco_map.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_md5.lo nco_md5.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_mmr.lo nco_mmr.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_msa.lo nco_msa.c nco_lst_utl.c: In function 'nco_fmt_sng_printf_subst': nco_lst_utl.c:38:23: warning: unknown escape sequence: '\.' const char rx_sng[]="%([+-0#'I])?([0-9]*)?([\.?[0-9]*)?([h+l+Ljzt])?[bcdeEfFgGiosuxX]"; /* [sng] Regular expression pattern */ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_mss_val.lo nco_mss_val.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_md5.c -fPIC -DPIC -o .libs/nco_md5.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mmr.c -fPIC -DPIC -o .libs/nco_mmr.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_md5.h:22, from nco_md5.c:25: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/errno.h:25, from nco_mmr.h:21, from nco_mmr.c:27: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_msa.c -fPIC -DPIC -o .libs/nco_msa.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_msa.h:21, from nco_msa.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mss_val.c -fPIC -DPIC -o .libs/nco_mss_val.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_mss_val.h:21, from nco_mss_val.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ nco_fl_utl.c: In function 'nco_fl_nm_prs': nco_fl_utl.c:1374:38: warning: '%d' directive writing between 1 and 11 bytes into a region of size 8 [-Wformat-overflow=] (void)sprintf(fl_nm_nbr_sng_fmt,"%%0%dd%%02d",fl_nm_nbr_dgt-2); ^~ nco_fl_utl.c:1374:34: note: directive argument in the range [-2147483648, 2147483645] (void)sprintf(fl_nm_nbr_sng_fmt,"%%0%dd%%02d",fl_nm_nbr_dgt-2); ^~~~~~~~~~~~~ In file included from /usr/include/stdio.h:873, from nco_fl_utl.h:23, from nco_fl_utl.c:10: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 9 and 19 bytes into a destination of size 10 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_mta.lo nco_mta.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_netcdf.lo nco_netcdf.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_omp.lo nco_omp.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_mta.c -fPIC -DPIC -o .libs/nco_mta.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_netcdf.c -fPIC -DPIC -o .libs/nco_netcdf.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_omp.c -fPIC -DPIC -o .libs/nco_omp.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_pck.lo nco_pck.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_mta.h:21, from nco_mta.c:12: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/ctype.h:25, from nco_netcdf.h:43, from nco_netcdf.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_omp.h:17, from nco_omp.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_ppc.lo nco_ppc.c nco_netcdf.c: In function 'nco_def_var_chunking': nco_netcdf.c:1928:148: warning: format '%ld' expects argument of type 'long int', but argument 5 has type 'unsigned int' [-Wformat=] if(sz > NCO_MAX_CHUNK_SIZE) (void)fprintf(stderr, "%s: ERROR Total requested chunk size = %lu exceeds netCDF maximium-supported chunk size = %ld\n",fnc_nm,sz,NCO_MAX_CHUNK_SIZE); ~~^ %d /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_prn.lo nco_prn.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_pck.c -fPIC -DPIC -o .libs/nco_pck.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_pck.h:17, from nco_pck.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_rec_var.lo nco_rec_var.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_ppc.c -fPIC -DPIC -o .libs/nco_ppc.o In file included from /usr/include/ctype.h:25, from nco_ppc.h:17, from nco_ppc.c:13: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_rgr.lo nco_rgr.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_prn.c -fPIC -DPIC -o .libs/nco_prn.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_rth_flt.lo nco_rth_flt.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_prn.h:21, from nco_prn.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_rth_utl.lo nco_rth_utl.c /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_scl_utl.lo nco_scl_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rec_var.c -fPIC -DPIC -o .libs/nco_rec_var.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_scm.lo nco_scm.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_rec_var.h:17, from nco_rec_var.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rgr.c -fPIC -DPIC -o .libs/nco_rgr.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/limits.h:26, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:194, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/syslimits.h:7, from /usr/lib/gcc/x86_64-linux-gnu/8/include-fixed/limits.h:34, from nco_rgr.h:17, from nco_rgr.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_sld.lo nco_sld.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rth_flt.c -fPIC -DPIC -o .libs/nco_rth_flt.o nco_prn.c: In function 'nco_prn_att': nco_prn.c:284:23: warning: too many arguments for format [-Wformat-extra-args] sprintf(val_hdn_sng,"%u,",flt_id,prm_nbr); ^~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_rth_flt.h:21, from nco_rth_flt.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_rth_utl.c -fPIC -DPIC -o .libs/nco_rth_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_scl_utl.c -fPIC -DPIC -o .libs/nco_scl_utl.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_scm.c -fPIC -DPIC -o .libs/nco_scm.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_rth_utl.h:17, from nco_rth_utl.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_scl_utl.h:21, from nco_scl_utl.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_scm.h:21, from nco_scm.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_sng_utl.lo nco_sng_utl.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_sld.c -fPIC -DPIC -o .libs/nco_sld.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_srm.lo nco_srm.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_sld.h:17, from nco_sld.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_avg.lo nco_var_avg.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_sng_utl.c -fPIC -DPIC -o .libs/nco_sng_utl.o nco_scm.c: In function 'nco_vrs_prn': nco_scm.c:168:25: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] const char date_cpp[]=__DATE__; /* [sng] Date from C pre-processor */ ^~~~~~~~ nco_scm.c:169:25: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] const char time_cpp[]=__TIME__; /* [sng] Time from C pre-processor */ ^~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_srm.c -fPIC -DPIC -o .libs/nco_srm.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_sng_utl.h:21, from nco_sng_utl.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from nco_srm.h:21, from nco_srm.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_lst.lo nco_var_lst.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_avg.c -fPIC -DPIC -o .libs/nco_var_avg.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_var_avg.h:17, from nco_var_avg.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_rth.lo nco_var_rth.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_lst.c -fPIC -DPIC -o .libs/nco_var_lst.o /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_scv.lo nco_var_scv.c In file included from /usr/include/assert.h:35, from nco_var_lst.h:21, from nco_var_lst.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_var_utl.lo nco_var_utl.c gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncbo.o ncbo.c nco_sng_utl.c: In function 'nm2sng_cdl': nco_sng_utl.c:270:34: warning: '__builtin___snprintf_chk' output truncated before the last format character [-Wformat-truncation=] snprintf(chr_out_ptr,4,"\\%%%.2x",*chr_in_ptr); ^ In file included from /usr/include/stdio.h:873, from nco_sng_utl.h:21, from nco_sng_utl.c:10: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: '__builtin___snprintf_chk' output 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncecat.o ncecat.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from ncbo.c:58: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncflint.o ncflint.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from ncecat.c:46: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ nco_sng_utl.c: In function 'nm2sng_fl': nco_sng_utl.c:425:34: warning: '__builtin___snprintf_chk' output truncated before the last format character [-Wformat-truncation=] snprintf(chr_out_ptr,4,"\\%%%.2x",*chr_in_ptr); ^ In file included from /usr/include/stdio.h:873, from nco_sng_utl.h:21, from nco_sng_utl.c:10: /usr/include/x86_64-linux-gnu/bits/stdio2.h:67:10: note: '__builtin___snprintf_chk' output 5 bytes into a destination of size 4 return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_scv.c -fPIC -DPIC -o .libs/nco_var_scv.o In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from ncflint.c:43: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_rth.c -fPIC -DPIC -o .libs/nco_var_rth.o gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncks.o ncks.c In file included from /usr/include/assert.h:35, from ncks.c:67: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_var_scv.h:17, from nco_var_scv.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from nco_var_rth.h:21, from nco_var_rth.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ nco_prn.c: In function 'nco_prn_var_val_lmt': nco_prn.c:1462:46: warning: '%s' directive writing up to 99 bytes into a region of size 86 [-Wformat-overflow=] (void)sprintf(var_sng,"%%s%c%%ld--%%ld%c='%s' %%s",arr_lft_dlm,arr_rgt_dlm,dmn_sng); ^~ ~~~~~~~ In file included from /usr/include/stdio.h:873, from nco_prn.h:22, from nco_prn.c:10: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 19 and 118 bytes into a destination of size 100 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c nco_var_utl.c -fPIC -DPIC -o .libs/nco_var_utl.o In file included from /usr/include/assert.h:35, from nco_var_utl.h:21, from nco_var_utl.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncpdq.o ncpdq.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from ncpdq.c:47: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncra.o ncra.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from ncra.c:62: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ncecat.c: In function 'main': ncecat.c:781:30: warning: '%02d' directive writing between 2 and 10 bytes into a region of size 3 [-Wformat-overflow=] sprintf(grp_out_sfx,"%02d",fl_idx); ^~~~ ncecat.c:781:29: note: directive argument in the range [0, 2147483647] sprintf(grp_out_sfx,"%02d",fl_idx); ^~~~~~ In file included from /usr/include/stdio.h:873, from ncecat.c:47: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 3 and 11 bytes into a destination of size 3 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncrename.o ncrename.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from ncrename.c:42: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncwa.o ncwa.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/math.h:27, from ncwa.c:44: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncap_utl.o ncap_utl.c In file included from /usr/include/assert.h:35, from ncap_utl.c:10: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ test -f ncap_lex.c || /bin/bash ../../autobld/ylwrap ncap_lex.l lex.nco_yy.c ncap_lex.c -- flex -Pnco_yy gcc -DHAVE_CONFIG_H -I. -I../.. -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o ncap_lex.o ncap_lex.c In file included from /usr/include/x86_64-linux-gnu/bits/libc-header-start.h:33, from /usr/include/stdio.h:27, from ncap_lex.c:278: /usr/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ ncap_lex.c: In function 'nco_yylex': ncap_lex.l:612:34: warning: '%s' directive writing up to 255 bytes into a region of size 160 [-Wformat-overflow=] (void)sprintf(ncap_err_sng,"Warning: Unable to locate RHS attribute %s of variable %s with var ID = %d in file %s. Returning 0-byte.",att_nm,var_nm,var_id,prs_arg->fl_in); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from /usr/include/stdio.h:873, from ncap_lex.c:278: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output 98 or more bytes (assuming 608) into a destination of size 200 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ncap_lex.l:588:29: warning: '%s' directive writing up to 255 bytes into a region of size 160 [-Wformat-overflow=] (void)sprintf(ncap_err_sng,"Warning: Unable to locate RHS attribute %s of variable %s with var ID = %d in file %s. Returning 0-byte.",att_nm,var_nm,var_id,prs_arg->fl_in); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from /usr/include/stdio.h:873, from ncap_lex.c:278: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output 98 or more bytes (assuming 608) into a destination of size 200 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ncap_lex.l:635:34: warning: '%s' directive writing up to 255 bytes into a region of size 164 [-Wformat-overflow=] (void)sprintf(ncap_err_sng,"#Warning: unable to locate variable %s. So cannot create attribute %s",var_nm,yytext); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~ In file included from /usr/include/stdio.h:873, from ncap_lex.c:278: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output 66 or more bytes (assuming 321) into a destination of size 200 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -release 4.7.9 -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl -lm -lcurl -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu -o libnco.la -rpath /usr/lib/nco nco_att_utl.lo nco_aux.lo nco_bnr.lo nco_cln_utl.lo nco_cnf_dmn.lo nco_cnf_typ.lo nco_cnk.lo nco_cnv_arm.lo nco_cnv_csm.lo nco_ctl.lo nco_dbg.lo nco_dmn_utl.lo nco_fl_utl.lo nco_grp_utl.lo nco_grp_trv.lo nco_lmt.lo nco_lst_utl.lo nco_map.lo nco_md5.lo nco_mmr.lo nco_msa.lo nco_mss_val.lo nco_mta.lo nco_netcdf.lo nco_omp.lo nco_pck.lo nco_ppc.lo nco_prn.lo nco_rec_var.lo nco_rgr.lo nco_rth_flt.lo nco_rth_utl.lo nco_scl_utl.lo nco_scm.lo nco_sld.lo nco_sng_utl.lo nco_srm.lo nco_var_avg.lo nco_var_lst.lo nco_var_rth.lo nco_var_scv.lo nco_var_utl.lo -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o .libs/nco_att_utl.o .libs/nco_aux.o .libs/nco_bnr.o .libs/nco_cln_utl.o .libs/nco_cnf_dmn.o .libs/nco_cnf_typ.o .libs/nco_cnk.o .libs/nco_cnv_arm.o .libs/nco_cnv_csm.o .libs/nco_ctl.o .libs/nco_dbg.o .libs/nco_dmn_utl.o .libs/nco_fl_utl.o .libs/nco_grp_utl.o .libs/nco_grp_trv.o .libs/nco_lmt.o .libs/nco_lst_utl.o .libs/nco_map.o .libs/nco_md5.o .libs/nco_mmr.o .libs/nco_msa.o .libs/nco_mss_val.o .libs/nco_mta.o .libs/nco_netcdf.o .libs/nco_omp.o .libs/nco_pck.o .libs/nco_ppc.o .libs/nco_prn.o .libs/nco_rec_var.o .libs/nco_rgr.o .libs/nco_rth_flt.o .libs/nco_rth_utl.o .libs/nco_scl_utl.o .libs/nco_scm.o .libs/nco_sld.o .libs/nco_sng_utl.o .libs/nco_srm.o .libs/nco_var_avg.o .libs/nco_var_lst.o .libs/nco_var_rth.o .libs/nco_var_scv.o .libs/nco_var_utl.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lgsl -lgslcblas -ludunits2 -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -fopenmp -Wl,-z -Wl,relro -Wl,-z -Wl,now -fopenmp -pthread -Wl,-soname -Wl,libnco-4.7.9.so -o .libs/libnco-4.7.9.so libtool: link: (cd ".libs" && rm -f "libnco.so" && ln -s "libnco-4.7.9.so" "libnco.so") libtool: link: ( cd ".libs" && rm -f "libnco.la" && ln -s "../libnco.la" "libnco.la" ) /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl -lm -lcurl -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu -o ncatted ncatted.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl 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libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl -lm -lcurl -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu -o ncflint ncflint.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl -lm -lcurl -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu -o ncks ncks.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl -lm -lcurl -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu -o ncpdq ncpdq.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl -lm -lcurl -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu -o ncra ncra.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl -lm -lcurl -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu -o ncrename ncrename.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 /bin/bash ../../libtool --tag=CXX --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl -lm -lcurl -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu -o ncwa ncwa.o ncap_utl.o ncap_lex.o libnco.la -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 libtool: link: gcc -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncrename ncrename.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl ./.libs/libnco.so -lnetcdf /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lgsl -lgslcblas -lm -ludunits2 -pthread -fopenmp -Wl,-rpath -Wl,/usr/lib/nco libtool: link: gcc -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncatted ncatted.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl ./.libs/libnco.so -lnetcdf /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lgsl -lgslcblas -lm -ludunits2 -pthread -fopenmp -Wl,-rpath -Wl,/usr/lib/nco libtool: link: gcc -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncwa ncwa.o ncap_utl.o ncap_lex.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl ./.libs/libnco.so -lnetcdf /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lgsl -lgslcblas -lm -ludunits2 -pthread -fopenmp -Wl,-rpath -Wl,/usr/lib/nco libtool: link: gcc -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncra ncra.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl ./.libs/libnco.so -lnetcdf /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lgsl -lgslcblas -lm -ludunits2 -pthread -fopenmp -Wl,-rpath -Wl,/usr/lib/nco libtool: link: gcc -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncecat ncecat.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl ./.libs/libnco.so -lnetcdf /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lgsl -lgslcblas -lm -ludunits2 -pthread -fopenmp -Wl,-rpath -Wl,/usr/lib/nco libtool: link: gcc -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncpdq ncpdq.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl ./.libs/libnco.so -lnetcdf /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lgsl -lgslcblas -lm -ludunits2 -pthread -fopenmp -Wl,-rpath -Wl,/usr/lib/nco libtool: link: gcc -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncks ncks.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl ./.libs/libnco.so -lnetcdf /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lgsl -lgslcblas -lm -ludunits2 -pthread -fopenmp -Wl,-rpath -Wl,/usr/lib/nco libtool: link: gcc -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncbo ncbo.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl ./.libs/libnco.so -lnetcdf /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lgsl -lgslcblas -lm -ludunits2 -pthread -fopenmp -Wl,-rpath -Wl,/usr/lib/nco libtool: link: gcc -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncflint ncflint.o -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl ./.libs/libnco.so -lnetcdf /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lgsl -lgslcblas -lm -ludunits2 -pthread -fopenmp -Wl,-rpath -Wl,/usr/lib/nco make[5]: Leaving directory '/build/nco-4.7.9/src/nco' Making all in nco++ make[5]: Entering directory '/build/nco-4.7.9/src/nco++' g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -c -o Invoke.o Invoke.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncap2.o ncap2.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncap2_utl.o ncap2_utl.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncap2_att.o ncap2_att.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sdo_utl.o sdo_utl.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sym_cls.o sym_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fmc_cls.o fmc_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fmc_all_cls.o fmc_all_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fmc_gsl_cls.o fmc_gsl_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -c -o prs_cls.o prs_cls.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -c -o NcapVar.o NcapVar.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -c -o NcapVarVector.o NcapVarVector.cc g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncoLexer.o ncoLexer.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncoParser.o ncoParser.cpp g++ -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -c -o ncoTree.o ncoTree.cpp In file included from libnco++.hh:26, from Invoke.cc:13: fmc_gsl_cls.hh:49: warning: "NCO_GSL_VERSION" redefined # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) In file included from fmc_gsl_cls.hh:12, from libnco++.hh:26, from Invoke.cc:13: ../../config.h:467: note: this is the location of the previous definition #define NCO_GSL_VERSION 205 In file included from fmc_gsl_cls.cc:10: fmc_gsl_cls.hh:49: warning: "NCO_GSL_VERSION" redefined # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) In file included from ncap2_att.hh:5, from ncap2_utl.hh:60, from ncoGrammer.g:31, from fmc_gsl_cls.hh:43, from fmc_gsl_cls.cc:10: ../../config.h:467: note: this is the location of the previous definition #define NCO_GSL_VERSION 205 In file included from libnco++.hh:26, from ncap2.cc:81: fmc_gsl_cls.hh:49: warning: "NCO_GSL_VERSION" redefined # define NCO_GSL_VERSION ( NCO_GSL_MAJOR_VERSION * 100 + NCO_GSL_MINOR_VERSION * 10 + NCO_GSL_PATCH_VERSION ) In file included from fmc_gsl_cls.hh:12, from libnco++.hh:26, from ncap2.cc:81: ../../config.h:467: note: this is the location of the previous definition #define NCO_GSL_VERSION 205 gcc -DHAVE_CONFIG_H -I. -I../.. -I./ -I../nco -I/usr/include -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include -I/usr/include -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -fopenmp -std=c99 -D_BSD_SOURCE -D_POSIX_SOURCE -c -o nco_gsl.o nco_gsl.c /bin/bash ../../libtool --tag=CXX --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -L../nco -lnco -lantlr -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lnetcdf -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl -lm -lcurl -Wl,-z,relro -Wl,-z,now -L/usr/lib/x86_64-linux-gnu -o ncap2 Invoke.o ncap2.o ncap2_utl.o ncap2_att.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o -ludunits2 -lgsl -lm -lnetcdf -lnetcdf -lnetcdf -lcurl -L/usr/lib/x86_64-linux-gnu -lgsl -lgslcblas -lm -ludunits2 libtool: link: g++ -g -O2 -ffile-prefix-map=/build/nco-4.7.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/ncap2 Invoke.o ncap2.o ncap2_utl.o ncap2_att.o sdo_utl.o sym_cls.o fmc_cls.o fmc_all_cls.o fmc_gsl_cls.o prs_cls.o NcapVar.o NcapVarVector.o ncoLexer.o ncoParser.o ncoTree.o nco_gsl.o -L../nco /build/nco-4.7.9/src/nco/.libs/libnco.so -lantlr -L/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5_hl -lhdf5 -lpthread -lsz -lz -ldl -lnetcdf /usr/lib/x86_64-linux-gnu/libcurl-gnutls.so -lgsl -lgslcblas -lm -ludunits2 -pthread -fopenmp -Wl,-rpath -Wl,/usr/lib/nco make[5]: Leaving directory '/build/nco-4.7.9/src/nco++' make[5]: Entering directory '/build/nco-4.7.9/src' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/build/nco-4.7.9/src' make[4]: Leaving directory '/build/nco-4.7.9/src' Making all in man make[4]: Entering directory '/build/nco-4.7.9/man' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/nco-4.7.9/man' Making all in doc make[4]: Entering directory '/build/nco-4.7.9/doc' restore=: && backupdir=".am$$" && \ am__cwd=`pwd` && CDPATH="${ZSH_VERSION+.}:" && cd . && \ rm -rf $backupdir && mkdir $backupdir && \ if (/bin/bash /build/nco-4.7.9/autobld/missing makeinfo --version) >/dev/null 2>&1; then \ for f in nco.info nco.info-[0-9] nco.info-[0-9][0-9] nco.i[0-9] nco.i[0-9][0-9]; do \ if test -f $f; then mv $f $backupdir; restore=mv; else :; fi; \ done; \ else :; fi && \ cd "$am__cwd"; \ if /bin/bash /build/nco-4.7.9/autobld/missing makeinfo -I . \ -o nco.info nco.texi; \ then \ rc=0; \ CDPATH="${ZSH_VERSION+.}:" && cd .; \ else \ rc=$?; \ CDPATH="${ZSH_VERSION+.}:" && cd . && \ $restore $backupdir/* `echo "./nco.info" | sed 's|[^/]*$||'`; \ fi; \ rm -rf $backupdir; exit $rc make[4]: Leaving directory '/build/nco-4.7.9/doc' make[4]: Entering directory '/build/nco-4.7.9' make[4]: Leaving directory '/build/nco-4.7.9' make[3]: Leaving directory '/build/nco-4.7.9' make[2]: Leaving directory '/build/nco-4.7.9' cd doc && /usr/bin/make clean && /usr/bin/make html make[2]: Entering directory '/build/nco-4.7.9/doc' test -z "nco.dvi nco.pdf nco.ps nco.html" \ || rm -rf nco.dvi nco.pdf nco.ps nco.html rm -rf .libs _libs rm -rf nco.t2d nco.t2p rm -f *.lo make[2]: Leaving directory '/build/nco-4.7.9/doc' make[2]: Entering directory '/build/nco-4.7.9/doc' rm -rf nco.htp if /bin/bash /build/nco-4.7.9/autobld/missing makeinfo --html --ifinfo --no-split -I . \ -o nco.htp nco.texi; \ then \ rm -rf nco.html && mv nco.htp nco.html; \ else \ rm -rf nco.htp; exit 1; \ fi make[2]: Leaving directory '/build/nco-4.7.9/doc' cd doc && /usr/bin/make nco.info && sed -i 's/xmp\/fgr[0-9].png/\/usr\/share\/doc\/nco\/&/' nco.info* make[2]: Entering directory '/build/nco-4.7.9/doc' make[2]: 'nco.info' is up to date. make[2]: Leaving directory '/build/nco-4.7.9/doc' make[1]: Leaving directory '/build/nco-4.7.9' debian/rules override_dh_auto_test make[1]: Entering directory '/build/nco-4.7.9' # currently the check phase badly fails dh_auto_test || echo "Ignoring test failures" make -j15 test VERBOSE=1 make[2]: Entering directory '/build/nco-4.7.9' make check make[3]: Entering directory '/build/nco-4.7.9' Making check in data make[4]: Entering directory '/build/nco-4.7.9/data' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/nco-4.7.9/data' Making check in src make[4]: Entering directory '/build/nco-4.7.9/src' Making check in nco make[5]: Entering directory '/build/nco-4.7.9/src/nco' make check-TESTS make[6]: Entering directory '/build/nco-4.7.9/src/nco' make[7]: Entering directory '/build/nco-4.7.9/src/nco' ============================================================================ Testsuite summary for NCO netCDF Operators 4.7.9 ============================================================================ # TOTAL: 0 # PASS: 0 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[7]: Leaving directory '/build/nco-4.7.9/src/nco' make[6]: Leaving directory '/build/nco-4.7.9/src/nco' make[5]: Leaving directory '/build/nco-4.7.9/src/nco' Making check in nco++ make[5]: Entering directory '/build/nco-4.7.9/src/nco++' make[5]: Nothing to be done for 'check'. make[5]: Leaving directory '/build/nco-4.7.9/src/nco++' make[5]: Entering directory '/build/nco-4.7.9/src' make[5]: Nothing to be done for 'check-am'. make[5]: Leaving directory '/build/nco-4.7.9/src' make[4]: Leaving directory '/build/nco-4.7.9/src' Making check in man make[4]: Entering directory '/build/nco-4.7.9/man' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/nco-4.7.9/man' Making check in doc make[4]: Entering directory '/build/nco-4.7.9/doc' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/nco-4.7.9/doc' make[4]: Entering directory '/build/nco-4.7.9' make[4]: Leaving directory '/build/nco-4.7.9' make[3]: Leaving directory '/build/nco-4.7.9' cd data && make in_4c.nc && cd .. make[3]: Entering directory '/build/nco-4.7.9/data' /build/nco-4.7.9/src/nco/ncks -O -7 --cnk_dmn time,10 in.nc in_4c.nc make[3]: Leaving directory '/build/nco-4.7.9/data' cd bm && ./nco_bm.pl --regress INFO: Testing for required modules Time::HiRes ... found. IO::Socket ... found. You do not have a $DATA directory defined and the test files are several GB. Where would you like to write the test data? Data will be placed in the indicated directory, under nco_bm, using the '--caseid' option to set the name of the subdirectory, if any. [/nonexistent/first-build] or specify: You entered [] Making /nonexistent/first-build/nco_bm/ & continuing mkdir: cannot create directory '/nonexistent': Permission denied Cannot get socket - continuing anyway. failed to execute: ncks --lbr_rcd: No such file or directory ncap2 test 01: Testing float modulo float......................................................... ERR: FAILED in ncap2 test: Testing float modulo float ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [0.1 0.2 0.3 0.4 0.5 0.6 0.7 0.8 0.9 1.0 ] ncap2 test 02: Testing foo=log(e_flt)^1 (may fail on old AIX TODO ncap57)......................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncap2 test: Testing foo=log(e_flt)^1 (may fail on old AIX TODO ncap57) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1.000000] ncap2 test 03: Testing foo=log(e_dbl)^1........................................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncap2 test: Testing foo=log(e_dbl)^1 ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1.000000000000] ncap2 test 04: Testing foo=4*atan(1).............................................................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncap2 test: Testing foo=4*atan(1) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [3.141592741013] ncap2 test 05: Testing foo=erf(1) (may fail on old AIX TODO ncap57)............................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncap2 test: Testing foo=erf(1) (may fail on old AIX TODO ncap57) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [0.842700779438] ncap2 test 06: Testing foo=gamma(0.5) (may fail on old AIX TODO ncap57)........................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncap2 test: Testing foo=gamma(0.5) (may fail on old AIX TODO ncap57) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1.772453851] ncap2 test 07: Testing foo=sin(pi/2).............................................................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncap2 test: Testing foo=sin(pi/2) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1.000000000000] ncap2 test 08: Testing foo=cos(pi)................................................................ !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncap2 test: Testing foo=cos(pi) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [-1.000000000000] ncap2 test 09: Casting variable with same name as dimension (ncap81 failed with netCDF4 until n... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncap2 test: Casting variable with same name as dimension (ncap81 failed with netCDF4 until netCDF 4.3.x) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [10] ncap2 test 10: Casting variable with a single dim of sz=1 (ncap81 failed with netCDF4 until net... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncap2 test: Casting variable with a single dim of sz=1 (ncap81 failed with netCDF4 until netCDF 4.3.x) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [10] ncap2 test 11: Verify non-averaging functions min/max on coordinate variables..................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncap2 test: Verify non-averaging functions min/max on coordinate variables ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [-90] ncap2 test 12: Run script to to test GSL functions -FAILS IF NOT linked to GSL lib................ !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncap2 test: Run script to to test GSL functions -FAILS IF NOT linked to GSL lib ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [0] ncap2 test 13: Run script to to test casting, hyperslabbing and intrinsic functions (Requires G... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncap2 test: Run script to to test casting, hyperslabbing and intrinsic functions (Requires GSL) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [0] ncap2 test 14: Run script to test conversion of input vars to type NC_DOUBLE using var-pointers... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncap2 test: Run script to test conversion of input vars to type NC_DOUBLE using var-pointers ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [0] ncap2 test 15: Run script to test udunits code.................................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncap2 test: Run script to test udunits code ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [0] ncap2 test 16: Run script to to test ncap2 NC_STRING handling (failure expected 2017-06-21)....... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncap2 test: Run script to to test ncap2 NC_STRING handling (failure expected 2017-06-21) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [0] ncap2 test 17: Run script to test sort functions.................................................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncap2 test: Run script to test sort functions ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [0] ncap2 test 18: Run script to test pack() function................................................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncap2 test: Run script to test pack() function ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [2802.00] ncatted test 01: Modify all existing units attributes to meter second-1............................. !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 0 ERR: FAILED in ncatted test: Modify all existing units attributes to meter second-1 ERR::EXPLAIN: Result: [] != Expected: [meter second-1] ncatted test 02: Change _FillValue attribute from 1.0e36 to 0.0 in netCDF3 file..................... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncatted test: Change _FillValue attribute from 1.0e36 to 0.0 in netCDF3 file ERR::EXPLAIN: Result: [] != Expected: [0] ncatted test 03: Create new _FillValue attribute.................................................... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncatted test: Create new _FillValue attribute ERR::EXPLAIN: Result: [] != Expected: [1] ncatted test 04: Pad header with 1000B extra for future metadata (failure OK/expected since test ... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncatted test: Pad header with 1000B extra for future metadata (failure OK/expected since test depends on command-line length) ERR::EXPLAIN: Result: [] != Expected: [27] ncatted test 05: Variable wildcarding (requires regex).............................................. !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncatted test: Variable wildcarding (requires regex) ERR::EXPLAIN: Result: [] != Expected: [999] ncatted test 06: Attribute wildcarding (requires regex)............................................. !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncatted test: Attribute wildcarding (requires regex) ERR::EXPLAIN: Result: [] != Expected: [999] ncatted test 07: Delete all attributes.............................................................. FAILED! ERR: FAILED in ncatted test: Delete all attributes ERR::EXPLAIN: Result: [0] != Expected: [4] ncbo test 01: Difference a packed variable and be sure everything is zero or _FillValue by ave... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncbo test: Difference a packed variable and be sure everything is zero or _FillValue by average whole remainder and comparing to zero.) FAILS with netCDF4 ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [0.0] ncbo test 02: Whole file difference with broadcasting (OK to fail here fxm TODO nco757. Works ... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncbo test: Whole file difference with broadcasting (OK to fail here fxm TODO nco757. Works with --mmr_drt, triggers segfault on OSs like FC Linux which have C-library armor. Harmless Failure caused by free'ing dangling pointer during memory cleanup.) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [4.5] ncbo test 03: difference scalar missing value.................................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncbo test: difference scalar missing value ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1.0e36] ncbo test 04: difference with missing value attribute............................................ !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncbo test: difference with missing value attribute ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1e+36] ncbo test 05: difference without missing value attribute......................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncbo test: difference without missing value attribute ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [0] ncbo test 06: _FillValues differ between files................................................... ERR: FAILED in ncbo test: _FillValues differ between files ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [-999.000000,-999.000000,-999.000000,-999.000000] ncbo test 07: _FillValue in one variable (not both variables).................................... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncbo test: _FillValue in one variable (not both variables) ERR::EXPLAIN: Result: [] != Expected: [0] ncbo test 08: ncdiff symbolically linked to ncbo................................................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncbo test: ncdiff symbolically linked to ncbo ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1e+36] ncbo test 09: difference with missing value attribute............................................ !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncbo test: difference with missing value attribute ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1e+36] ncbo test 10: Difference without missing value attribute......................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncbo test: Difference without missing value attribute ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [0] ncbo test 11: Difference which tests broadcasting and changing variable IDs...................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncbo test: Difference which tests broadcasting and changing variable IDs ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [-1.0] ncbo test 12: Difference which tests 3D broadcasting............................................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncbo test: Difference which tests 3D broadcasting ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [2697] ncbo test 13: Addition + 3D broadcasting+ MSA.................................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncbo test: Addition + 3D broadcasting+ MSA ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [422] ncbo test 14: Copy associated coordinates -v three_dmn_rec_var................................... ERR: FAILED in ncbo test: Copy associated coordinates -v three_dmn_rec_var ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [time[9]=10 lat[1]=90 lon[3]=270 three_dmn_rec_var[79]=0] ncbo test 15: Concatenate variables with different ID ordering................................... ERR: FAILED in ncbo test: Concatenate variables with different ID ordering ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [one = 0] nces test 01: ensemble mean of int across two files.............................................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in nces test: ensemble mean of int across two files ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [5] nces test 02: ensemble sum of missing value across two files..................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in nces test: ensemble sum of missing value across two files ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1.0e36] nces test 03: ensemble mean with missing values across two files................................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in nces test: ensemble mean with missing values across two files ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1.0e36] nces test 04: ensemble min of float across two files............................................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in nces test: ensemble min of float across two files ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [2] nces test 05: scale factor + add_offset packing/unpacking........................................ !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in nces test: scale factor + add_offset packing/unpacking ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [3] nces test 06: ensemble mean of integer with integer missing values across two files.............. ERR: FAILED in nces test: ensemble mean of integer with integer missing values across two files ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [-999 2 3 4 5 6 7 8 -999 -999] nces test 07: ensemble mean of 3D variable across two files with MSA............................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in nces test: ensemble mean of 3D variable across two files with MSA ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [150] nces test 08: Check op with OpenMP............................................................... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 0 ERR: FAILED in nces test: Check op with OpenMP ERR::EXPLAIN: Result: [] != Expected: [n2 = 1] nces test 09: Ensemble mean of variable packed with netCDF convention across three files......... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in nces test: Ensemble mean of variable packed with netCDF convention across three files ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [7] nces test 10: Ensemble mean of variable packed with HDF convention across three files............ !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in nces test: Ensemble mean of variable packed with HDF convention across three files ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [-8] nces test 11: Test file loop..................................................................... ERR: FAILED in nces test: Test file loop ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [dgn[0]=73 dgn_var[0]=73] nces test 12: Test mebs normalization............................................................ ERR: FAILED in nces test: Test mebs normalization ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [one = 1] nces test 13: Test tabs (total absolute value)................................................... ERR: FAILED in nces test: Test tabs (total absolute value) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [one = 2] nces test 14: Test tabs on coordinate............................................................ ERR: FAILED in nces test: Test tabs on coordinate ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [lon[3]=270] ncecat test 01: concatenate two files containing only scalar variables............................. ERR: FAILED in ncecat test: concatenate two files containing only scalar variables ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [ 1.000, ] ncecat test 02: concatenate two 3D vars with multihyperslabbing.................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncecat test: concatenate two 3D vars with multihyperslabbing ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [84] ncecat test 03: Concatenate variables with different ID ordering................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncecat test: Concatenate variables with different ID ordering ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1] ncecat test 04: Verify concatentated coordinates do not gain new record dimension.................. ERR: FAILED in ncecat test: Verify concatentated coordinates do not gain new record dimension ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [lat[1]=90] ncecat test 05: Test group aggregation with --gag.................................................. ERR: FAILED in ncecat test: Test group aggregation with --gag ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [one = 1] ncflint test 01: identity weighting................................................................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncflint test: identity weighting ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1.0] ncflint test 02: identity interpolation............................................................. !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncflint test: identity interpolation ERR::EXPLAIN: Result: [] != Expected: [2.0] ncflint test 03: switch order of occurrence to test for commutivity................................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncflint test: switch order of occurrence to test for commutivity ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1e+36] ncflint test 04: output type float when interpolating between two packed floats..................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncflint test: output type float when interpolating between two packed floats ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [4] ncflint test 05: Concatenate variables with different ID ordering................................... ERR: FAILED in ncflint test: Concatenate variables with different ID ordering ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [one = 1] ncks test 01: Create T42 variable named one, uniformly 1.0 over globe in %tmp_fl_03%. (FAILURE... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncks test: Create T42 variable named one, uniformly 1.0 over globe in %tmp_fl_03%. (FAILURE with netCDF4 ncrename nco821) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1] ncks test 02: extract filename string............................................................ SVa ok ncks test 03: extract a dimension................................................................ ERR: FAILED in ncks test: extract a dimension ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [100.000000,500.000000,1000.000000] ncks test 04: extract a variable with limits..................................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncks test: extract a variable with limits ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [23] ncks test 05: extract variable of type NC_INT.................................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncks test: extract variable of type NC_INT ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [10] ncks test 06: Multi-slab lat and lon with srd.................................................... ERR: FAILED in ncks test: Multi-slab lat and lon with srd ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [12.0,13.0,14.0,15.0,20.0,21.0,22.0,23.0] ncks test 07: Multi-slab with redundant hyperslabs............................................... ERR: FAILED in ncks test: Multi-slab with redundant hyperslabs ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [20.0,21.0,22.0,23.0] ncks test 08: Multi-slab with coordinates........................................................ ERR: FAILED in ncks test: Multi-slab with coordinates ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [20.0,21.0,22.0,23.0] ncks test 09: Double-wrapped hyperslab........................................................... ERR: FAILED in ncks test: Double-wrapped hyperslab ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [23.0,20.0,15.0,12.0] ncks test 10: dimension slice using UDUnits library (fails without UDUnits library support)...... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncks test: dimension slice using UDUnits library (fails without UDUnits library support) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [876018] ncks test 11: dim slice using UDUnits library and cal 365_days (fails without UDUnits library ... ERR: FAILED in ncks test: dim slice using UDUnits library and cal 365_days (fails without UDUnits library support) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [lon_cln_ttl = 10] ncks test 12: dim slice using UDUnits library and cal 360_days (fails without UDUnits library ... ERR: FAILED in ncks test: dim slice using UDUnits library and cal 360_days (fails without UDUnits library support) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [lat_cln_ttl = 18] ncks test 13: dimension slice using UDUnit conversion (fails without UDUnits library support).... SVn prov. ok ncks test 14: variable wildcards A (fails without regex library)................................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncks test: variable wildcards A (fails without regex library) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [3] ncks test 15: variable wildcards B (fails without regex library)................................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncks test: variable wildcards B (fails without regex library) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1] ncks test 16: Print byte value................................................................... SVn ok ncks test 17: CF convention coordinates attribute................................................ !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncks test: CF convention coordinates attribute ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [180] ncks test 18: Create/copy global _FillValue...................................................... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncks test: Create/copy global _FillValue ERR::EXPLAIN: Result: [] != Expected: [222] ncks test 19: Auxiliary coordinates writing -X 0.,1.,-30.,-29. -v gds_3dvar...................... ERR: FAILED in ncks test: Auxiliary coordinates writing -X 0.,1.,-30.,-29. -v gds_3dvar ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [gds_crd[0]=1 lon_gds[0]=0 degree] ncks test 20: Extract CF 'ancillary_variables' variables (netCDF3 file).......................... ERR: FAILED in ncks test: Extract CF 'ancillary_variables' variables (netCDF3 file) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [time[0]=6 cnv_CF_ncl_var_2[0]=36] ncks test 21: Select last element using negative one index....................................... SVa ok ncks test 22: Auxiliary coordinate writing two variables......................................... SVa ok ncks test 23: Test -X auxiliary coordinates where underlying dimension is a non-coordinate dim... SVa ok ncks test 24: Test attribute writing for DSD compression......................................... SVa ok ncks test 25: Test DSD compression rounding to hundreds.......................................... SVn ok ncks test 26: Test DSD attribute does not overwrite pre-existing rounder values.................. SVa ok ncks test 27: Test DSD attribute does overwrite pre-existing sharper values in multi-argument ... SVa ok ncks test 28: Test attribute writing for NSD compression......................................... SVa ok ncks test 29: Test NSD compression rounding to three significant digits.......................... SVn ok ncks test 30: Test NSD attribute does not overwrite pre-existing rounder values.................. SVa ok ncks test 31: Test NSD attribute does overwrite pre-existing sharper values...................... SVa ok ncks test 32: Test that -x exclusion of coordinate variables only works with -C.................. SVa ok ncks test 33: Extract 'climatology' variables.................................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncks test: Extract 'climatology' variables ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [10.5] ncks test 34: (Groups) Test wrapped limit with addtional limit (no --msa)........................ SVa ok ncks test 35: (Groups) Test wrapped limit with additional limit and msa user order (expect fai... ERR: FAILED in ncks test: (Groups) Test wrapped limit with additional limit and msa user order (expect failure TODO nco1134) ERR::EXPLAIN: Result: [time[2]=3 ] != Expected: [time[3]=3] ncks test 36: Multi-argument parsing by Jerome, test last argument is time string................ ERR: FAILED in ncks test: Multi-argument parsing by Jerome, test last argument is time string ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [Thu Sep 15 13:03:18 PDT 2016] ncks test 37: Multi-argument parsing test first argument......................................... ERR: FAILED in ncks test: Multi-argument parsing test first argument ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [bar1] ncks test 38: Multi-argument parsing test second-to-last key is time string...................... ERR: FAILED in ncks test: Multi-argument parsing test second-to-last key is time string ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [Thu Sep 15 13:03:18 PDT 2016] ncks test 39: Multi-argument parsing test arguments after time string kvm........................ ERR: FAILED in ncks test: Multi-argument parsing test arguments after time string kvm ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [bar4] ncks test 40: Multi-argument parsing test when all kvms have subdelimiters....................... ERR: FAILED in ncks test: Multi-argument parsing test when all kvms have subdelimiters ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [bar4] ncks test 41: Multi-argument parsing test when some of the delimiters are handled by backslash... ERR: FAILED in ncks test: Multi-argument parsing test when some of the delimiters are handled by backslashes ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [Thu Sep 15 13:03:18 PDT 2016] ncks test 42: Test UDUNITS with dates as limits - fails without UDUNITS.......................... ERR: FAILED in ncks test: Test UDUNITS with dates as limits - fails without UDUNITS ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [time_ttl = 9106] ncks test 43: Test behavior when NC4_SRD_WORKAROUND would be used................................ ERR: FAILED in ncks test: Test behavior when NC4_SRD_WORKAROUND would be used ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [zg_ttl_dff = 0] ncks test 44: Multi-argument parsing test with flags............................................. ERR: FAILED in ncks test: Multi-argument parsing test with flags ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [bar4] ncks test 45: netCDF4 test extraction of OOG CF2 vars declared in lon4_var:bounds and lat4_var... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncks test: netCDF4 test extraction of OOG CF2 vars declared in lon4_var:bounds and lat4_var:coordinates ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1] ncks test 46: netCDF4 test --cal switch.......................................................... SVa ok ncks test 47: ncks test auxiliary coords WITHOUT standard_name................................... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncks test: ncks test auxiliary coords WITHOUT standard_name ERR::EXPLAIN: Result: [] != Expected: [0] ncpdq test 01: Reverse coordinate -a -lat -v lat.................................................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncpdq test: Reverse coordinate -a -lat -v lat ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [90] ncpdq test 02: Reverse 3D variable a -lat,-lev,-lon -v three_dmn_var.............................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncpdq test: Reverse 3D variable a -lat,-lev,-lon -v three_dmn_var ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [23] ncpdq test 03: Re-order 3D variable (no associated coordinates) -C -a lon,lat -v three_dmn_var ... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncpdq test: Re-order 3D variable (no associated coordinates) -C -a lon,lat -v three_dmn_var ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [11] ncpdq test 04: Re-order 3D variable (associated coordinates) -a lon,lat -v three_dmn_var ......... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncpdq test: Re-order 3D variable (associated coordinates) -a lon,lat -v three_dmn_var ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [11] ncpdq test 05: Re-order 3D variable with MSA -C -a lat,lon,time -v three_dmn_var_dbl -d time,0,... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncpdq test: Re-order 3D variable with MSA -C -a lat,lon,time -v three_dmn_var_dbl -d time,0,3 -d time,9,9 -d lon,0,0 -d lon,3,3 ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [20] ncpdq test 06: Re-order 3D variable with MSA -C -a lat,lon,time -v three_dmn_var_dbl -d time,0,... ERR: FAILED in ncpdq test: Re-order 3D variable with MSA -C -a lat,lon,time -v three_dmn_var_dbl -d time,0,3 -d time,9,9 -d lon,0,0 -d lon,3,3 ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [three_dmn_var_dbl] ncpdq test 07: Re-order 3D variable with MSA (stride) -a lat,lon,time -d time,1,3,2 -d lat,1,1,... ERR: FAILED in ncpdq test: Re-order 3D variable with MSA (stride) -a lat,lon,time -d time,1,3,2 -d lat,1,1,1 -d lon,1,3,2 -v three_dmn_var_dbl ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [lat[0]=90 lon[1]=270 time[0]=2 three_dmn_var_dbl[2]=16] ncpdq test 08: Re-order 3D variable with MSA+ reversal of time dim -C -a lat,lon,-time -v three... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncpdq test: Re-order 3D variable with MSA+ reversal of time dim -C -a lat,lon,-time -v three_dmn_var_dbl -d time,0,3 -d time,9,9 -d lon,0,0 -d lon,3,3 ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [8] ncpdq test 09: Re-order 3D variable with MSA and --msa_usr_rdr flag -C -a lon,lat -v three_dmn_... ERR: FAILED in ncpdq test: Re-order 3D variable with MSA and --msa_usr_rdr flag -C -a lon,lat -v three_dmn_var_dbl -d time,0,2 -d time,4 -d lat,1 -d lat,1 --msa_usr_rdr ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [13,13] ncpdq test 10: Re-order 2D variable (-C, no MSA, no-reorder) -v two_dmn_var -a lat,lev............ ERR: FAILED in ncpdq test: Re-order 2D variable (-C, no MSA, no-reorder) -v two_dmn_var -a lat,lev ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [lat[1] lev[1] two_dmn_var[4]=17.5 fraction] ncpdq test 11: Re-order 2D variable (-C, no MSA) -v two_dmn_var -a lev,lat........................ ERR: FAILED in ncpdq test: Re-order 2D variable (-C, no MSA) -v two_dmn_var -a lev,lat ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [lev[1] lat[1] two_dmn_var[3]=17.5 fraction] ncpdq test 12: Re-order 2D variable (no -C, no MSA) -v two_dmn_var -a lev,lat..................... ERR: FAILED in ncpdq test: Re-order 2D variable (no -C, no MSA) -v two_dmn_var -a lev,lat ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [lev[1]=500 lat[1]=90 two_dmn_var[3]=17.5 fraction] ncpdq test 13: Re-order 2D variable (-C, MSA) -v two_dmn_var -a lev,lat -d lat,1,1 -d lev,1,1..... ERR: FAILED in ncpdq test: Re-order 2D variable (-C, MSA) -v two_dmn_var -a lev,lat -d lat,1,1 -d lev,1,1 ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [lev[0] lat[0] two_dmn_var[0]=17.5 fraction] ncpdq test 14: Re-order 2D variable (no -C, MSA) -v two_dmn_var -a lev,lat -d lat,1,1 -d lev,1,... ERR: FAILED in ncpdq test: Re-order 2D variable (no -C, MSA) -v two_dmn_var -a lev,lat -d lat,1,1 -d lev,1,1 ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [lev[0]=500 lat[0]=90 two_dmn_var[0]=17.5 fraction] ncpdq test 15: Re-order 2D variable with record (-C, no MSA) -v two_dmn_rec_var -C -a lev,time.... ERR: FAILED in ncpdq test: Re-order 2D variable with record (-C, no MSA) -v two_dmn_rec_var -C -a lev,time ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [lev[1] time[1] two_dmn_rec_var[11]=2.1 watt meter-2] ncpdq test 16: Re-order 2D variable with record (no -C, no MSA) -v two_dmn_rec_var -a lev,time.... ERR: FAILED in ncpdq test: Re-order 2D variable with record (no -C, no MSA) -v two_dmn_rec_var -a lev,time ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [lev[1]=500 time[1]=2 two_dmn_rec_var[11]=2.1 watt meter-2] ncpdq test 17: Re-order 2D variable with record (-C, MSA) -a lev,time -d time,1,1 -d lev,1,1 -v... ERR: FAILED in ncpdq test: Re-order 2D variable with record (-C, MSA) -a lev,time -d time,1,1 -d lev,1,1 -v two_dmn_rec_var ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [lev[0] time[0] two_dmn_rec_var[0]=2.1 watt meter-2] ncpdq test 18: Re-order 2D variable with record (no -C, MSA) -a lev,time -d time,1,1 -d lev,1,1... ERR: FAILED in ncpdq test: Re-order 2D variable with record (no -C, MSA) -a lev,time -d time,1,1 -d lev,1,1 -v two_dmn_rec_var ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [lev[0]=500 time[0]=2 two_dmn_rec_var[0]=2.1 watt meter-2] ncpdq test 19: Reverse/Re-order 3D variable -a -lat,-time -v three_dmn_var_dbl -d time,1,1 -d l... ERR: FAILED in ncpdq test: Reverse/Re-order 3D variable -a -lat,-time -v three_dmn_var_dbl -d time,1,1 -d lat,1,1 -d lon,1,1 ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [lat[1]=-90 time[2]=2 lon[0]=90 three_dmn_var_dbl[5]=10] ncpdq test 20: Re-order several variables -a lat,time -v ty,three_dmn_rec_var (no MSA) Test1...... ERR: FAILED in ncpdq test: Re-order several variables -a lat,time -v ty,three_dmn_rec_var (no MSA) Test1 ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [lat[1]=90 time[1]=2 ty[11]=4] ncpdq test 21: Re-order several variables -a lat,time -v ty,three_dmn_rec_var (no MSA) Test2...... ERR: FAILED in ncpdq test: Re-order several variables -a lat,time -v ty,three_dmn_rec_var (no MSA) Test2 ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [lat[1]=90 time[1]=2 lon[1]=90 three_dmn_rec_var[45]=14] ncpdq test 22: Re-order several variables -a lat,time -v ty,three_dmn_rec_var (MSA) Test1 read ... ERR: FAILED in ncpdq test: Re-order several variables -a lat,time -v ty,three_dmn_rec_var (MSA) Test1 read ty ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [lat[0]=90 time[2]=6 ty[2]=12] ncpdq test 23: Re-order several variables -a lat,time -v ty,three_dmn_rec_var (MSA) Test2 read ... ERR: FAILED in ncpdq test: Re-order several variables -a lat,time -v ty,three_dmn_rec_var (MSA) Test2 read three_dmn_rec_var ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [lat[0]=90 time[1]=4 lon[1]=90 three_dmn_rec_var[5]=30] ncpdq test 24: Re-order several variables -a lat,time -v ty,three_dmn_rec_var Test3 check recor... ERR: FAILED in ncpdq test: Re-order several variables -a lat,time -v ty,three_dmn_rec_var Test3 check record for lat ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [three_dmn_rec_var dimension 0: lat, size = 2] ncpdq test 25: Re-order several variables -a lat,time -v ty,three_dmn_rec_var Test4 check non-r... ERR: FAILED in ncpdq test: Re-order several variables -a lat,time -v ty,three_dmn_rec_var Test4 check non-record dim is time ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [)emit si etanidrooC(] ncpdq test 26: Reverse/Re-order 4D variable -a lev,time,-lon,-lat -v four_dmn_rec_var (MSA)....... ERR: FAILED in ncpdq test: Reverse/Re-order 4D variable -a lev,time,-lon,-lat -v four_dmn_rec_var (MSA) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [lev[0]=500 time[2]=6 lon[0]=90 lat[0]=90 four_dmn_rec_var[2]=138] ncpdq test 27: Re-order 3D variable (only 1 in -a) -a lat,time -v PS,three_dmn_var_crd (MSA)...... ERR: FAILED in ncpdq test: Re-order 3D variable (only 1 in -a) -a lat,time -v PS,three_dmn_var_crd (MSA) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [lat[0]=90 lev[0]=500 lon[0]=90 three_dmn_var_crd[0]=17] ncpdq test 28: Re-order all variables -a lat,time (MSA)........................................... ERR: FAILED in ncpdq test: Re-order all variables -a lat,time (MSA) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [lat[0]=90 time[0]=2 lev[2]=1000 lon[2]=180 four_dmn_rec_var[10]=47] ncpdq test 29: Pack and then unpack scalar (uses only add_offset) -P all_new -v upk............... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncpdq test: Pack and then unpack scalar (uses only add_offset) -P all_new -v upk ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [3] ncpdq test 30: Unpack 1D variable with MSA -C P upk -v rec_var_dbl_mss_val_dbl_pck -d time,0,4 ... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncpdq test: Unpack 1D variable with MSA -C P upk -v rec_var_dbl_mss_val_dbl_pck -d time,0,4 -d time,6 ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [7] ncpdq test 31: Pack 3D variable with MSA -C -P all_xst -v three_dmn_var_dbl -d time,0,2 -d time... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncpdq test: Pack 3D variable with MSA -C -P all_xst -v three_dmn_var_dbl -d time,0,2 -d time,8,9 -d lon,0 -d lon,1 -d lat,1 ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [17505] ncpdq test 32: Unpack 1D variable twice to verify first unpacking does not inadvertently store ... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncpdq test: Unpack 1D variable twice to verify first unpacking does not inadvertently store packing attributes ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [7] ncpdq test 33: Unpack 1D variable with netCDF convention.......................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncpdq test: Unpack 1D variable with netCDF convention ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [7] ncpdq test 34: Unpack 1D variable with HDF convention............................................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncpdq test: Unpack 1D variable with HDF convention ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [-8] ncpdq test 35: Re-pack 1D variable from HDF convention to netCDF convention....................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncpdq test: Re-pack 1D variable from HDF convention to netCDF convention ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [-8] ncrcat test 01: Concatenate float with double missing values across two files...................... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncrcat test: Concatenate float with double missing values across two files ERR::EXPLAIN: Result: [] != Expected: [2] ncrcat test 02: Concatenate record coordinate-bounded variable across two non-monotonic files...... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 0 ERR: FAILED in ncrcat test: Concatenate record coordinate-bounded variable across two non-monotonic files ERR::EXPLAIN: Result: [] != Expected: [2 3 2 3] ncrcat test 03: Concatenate float variable with multislabs across two files........................ !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncrcat test: Concatenate float variable with multislabs across two files ERR::EXPLAIN: Result: [] != Expected: [20] ncrcat test 04: Concatenate int variable with multislabs across two files.......................... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncrcat test: Concatenate int variable with multislabs across two files ERR::EXPLAIN: Result: [] != Expected: [28] ncrcat test 05: Concatenate float 4D variable with multislabs across two files..................... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncrcat test: Concatenate float 4D variable with multislabs across two files ERR::EXPLAIN: Result: [] != Expected: [204] ncrcat test 06: Concatenate 1D variable with stride across two files............................... ERR: FAILED in ncrcat test: Concatenate 1D variable with stride across two files ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [ 1, 5, 9,13,17] ncrcat test 07: Concatenate 1D variable with stride across three files............................. ERR: FAILED in ncrcat test: Concatenate 1D variable with stride across three files ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [ 1, 9,17,25] ncrcat test 08: Concatenate 1D variable with stride across files with different record dimension... ERR: FAILED in ncrcat test: Concatenate 1D variable with stride across files with different record dimensions ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [11,13,15,27] ncrcat test 09: Concatenate 1D variable across two files no limits. Requires UDUnits............... ERR: FAILED in ncrcat test: Concatenate 1D variable across two files no limits. Requires UDUnits. ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [time_ttl = 210] ncrcat test 10: Concatenate 1D variable across three files double limits. Requires UDUnits......... ERR: FAILED in ncrcat test: Concatenate 1D variable across three files double limits. Requires UDUnits. ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [time_ttl = 17] ncrcat test 11: Concatenate 1D variable across three files double limits2. Requires UDUnits........ ERR: FAILED in ncrcat test: Concatenate 1D variable across three files double limits2. Requires UDUnits. ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [time_ttl = 155] ncrcat test 12: Concatenate 1D variable across three files time stamp limits2. Requires UDUnits.... ERR: FAILED in ncrcat test: Concatenate 1D variable across three files time stamp limits2. Requires UDUnits. ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [time_ttl = 33] ncrcat test 13: Cat. 1D var over 3 files with large stride. Requires UDUnits....................... ERR: FAILED in ncrcat test: Cat. 1D var over 3 files with large stride. Requires UDUnits. ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [time_ttl = 33] ncrcat test 14: Cat. 1D var over 3 files coord limits+stride. Requires UDUnits..................... ERR: FAILED in ncrcat test: Cat. 1D var over 3 files coord limits+stride. Requires UDUnits. ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [time_ttl = 51] ncrcat test 15: Cat. 1D var over three files date-stamp limits+stride. Requires UDUnits............ ERR: FAILED in ncrcat test: Cat. 1D var over three files date-stamp limits+stride. Requires UDUnits. ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [time_ttl = 51] ncrcat test 16: Cat. 1D var over 3 files date-stamp limits+stride. Requires UDUnits................ ERR: FAILED in ncrcat test: Cat. 1D var over 3 files date-stamp limits+stride. Requires UDUnits. ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [time_ttl = 54] ncrcat test 17: Cat. 1D variable over 3 files dmn limits+stride. Requires UDUnits.................. ERR: FAILED in ncrcat test: Cat. 1D variable over 3 files dmn limits+stride. Requires UDUnits. ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [time_ttl = 20] ncrcat test 18: Cat. 1D var over 4 files different record sizes. Requires UDUnits.................. ERR: FAILED in ncrcat test: Cat. 1D var over 4 files different record sizes. Requires UDUnits. ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [time_ttl = 92] ncrcat test 19: Cat. 1D var over 4 files with srd=4 different rec sizes. Requires UDUnits.......... ERR: FAILED in ncrcat test: Cat. 1D var over 4 files with srd=4 different rec sizes. Requires UDUnits. ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [time_ttl = 28] ncrcat test 20: Cat. 1D var over 4 files with srd=3 str/end timestamps. Requires UDUnits........... ERR: FAILED in ncrcat test: Cat. 1D var over 4 files with srd=3 str/end timestamps. Requires UDUnits. ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [time_ttl = 45] ncrcat test 21: Append records to existing file without copying original........................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncrcat test: Append records to existing file without copying original ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [10] ncrcat test 22: Concatenate 1D variable across two files. [hours file1 - days file2] .Requires U... ERR: FAILED in ncrcat test: Concatenate 1D variable across two files. [hours file1 - days file2] .Requires UDUnits. ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [time_ttl = 1475] ncrcat test 23: Concatenate 1D variable across 1 file with temperature (Celsius) limits............ ERR: FAILED in ncrcat test: Concatenate 1D variable across 1 file with temperature (Celsius) limits ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [time_ttl = 5] ncrcat test 24: Concatenate 1D variable across 1 file. [limits - timstamp day_360 calendar] .Req... ERR: FAILED in ncrcat test: Concatenate 1D variable across 1 file. [limits - timstamp day_360 calendar] .Requires UDUnits. ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [time_ttl = 10] ncrcat test 25: Concatenate 1D variable across two files no limits check climatology_bounds . Re... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 0 ERR: FAILED in ncrcat test: Concatenate 1D variable across two files no limits check climatology_bounds . Requires UDUnits. ERR::EXPLAIN: Result: [] != Expected: [climo_ttl = 420] ncrcat test 26: Detect input_complete when stride skips user-specified idx_end_max................. ERR: FAILED in ncrcat test: Detect input_complete when stride skips user-specified idx_end_max ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1, 10,] ncrcat test 27: Another detect input_complete when stride skips user-specified idx_end_max......... ERR: FAILED in ncrcat test: Another detect input_complete when stride skips user-specified idx_end_max ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1, 3,] ncra test 01: record sdn of float with double missing values across two files.................... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: record sdn of float with double missing values across two files ERR::EXPLAIN: Result: [] != Expected: [2] ncra test 02: record mean of int across two files................................................ !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: record mean of int across two files ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [6] ncra test 03: record mean of float with double missing values.................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: record mean of float with double missing values ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [5] ncra test 04: record mean of float with integer missing values................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: record mean of float with integer missing values ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [5] ncra test 05: record mean of integer with integer missing values................................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: record mean of integer with integer missing values ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [5] ncra test 06: record mean of integer with integer missing values across two files................ !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: record mean of integer with integer missing values across two files ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [5] ncra test 07: record mean of integer with float missing values................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: record mean of integer with float missing values ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [5] ncra test 08: record mean of integer with float missing values across two files.................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: record mean of integer with float missing values across two files ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [5] ncra test 09: record mean of packed double with double missing values............................ !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: record mean of packed double with double missing values ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [5] ncra test 10: record mean of packed double to test precision..................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: record mean of packed double to test precision ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [100.55] ncra test 11: record mean of packed float to test precision...................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: record mean of packed float to test precision ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [100.55] ncra test 12: pass through non-record (i.e., non-processed) packed data to output................ !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: pass through non-record (i.e., non-processed) packed data to output ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1] ncra test 13: record mean of float with double missing values across two files................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: record mean of float with double missing values across two files ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [5] ncra test 14: record min of float with double missing values across two files.................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: record min of float with double missing values across two files ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [2] ncra test 15: record max of float with double missing values across two files.................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: record max of float with double missing values across two files ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [8] ncra test 16: record ttl of float with double missing values across two files.................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: record ttl of float with double missing values across two files ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [70] ncra test 17: record rms of float with double missing values across two files.................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: record rms of float with double missing values across two files ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [5.38516] ncra test 18: Return mean time coordinate (when computing totals) across two files............... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: Return mean time coordinate (when computing totals) across two files ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [5.5] ncra test 19: Return total record (when computing totals) across two files....................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: Return total record (when computing totals) across two files ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [110] ncra test 20: Return record average of cell-based geodesic data.................................. ERR: FAILED in ncra test: Return record average of cell-based geodesic data ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [ 277.7 277.8 277.9 278.0 278.1 278.2] ncra test 21: Check op with OpenMP............................................................... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 0 ERR: FAILED in ncra test: Check op with OpenMP ERR::EXPLAIN: Result: [] != Expected: [n2 = 1] ncra test 22: Append records to existing file without copying original........................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: Append records to existing file without copying original ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [6] ncra test 23: Treatment of missing values with MRO and rth_dbl................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: Treatment of missing values with MRO and rth_dbl ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [__] ncra test 24: Handle scale factor and missing value with rth_dbl................................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: Handle scale factor and missing value with rth_dbl ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [5.5] ncra test 25: Test per-file weighting with --wgt 28,29,30........................................ ERR: FAILED in ncra test: Test per-file weighting with --wgt 28,29,30 ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1, 2.45, 3,] ncra test 26: Test per-record weighting with --wgt=one_dmn_rec_wgt............................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: Test per-record weighting with --wgt=one_dmn_rec_wgt ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1.33333] ncra test 27: Test per-file weighting without missing values..................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: Test per-file weighting without missing values ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [2.33333] ncra test 28: Test per-file weighting with missing values with --wgt 1,2,3....................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: Test per-file weighting with missing values with --wgt 1,2,3 ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [2.6] ncra test 29: Test per-file weighting with missing values with --wgt 3,2,1....................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: Test per-file weighting with missing values with --wgt 3,2,1 ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1.0] ncra test 30: Test MSA running average (expect failure TODO nco1126)............................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncra test: Test MSA running average (expect failure TODO nco1126) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1.5] ncra test 31: Test SSC MRO running average....................................................... ERR: FAILED in ncra test: Test SSC MRO running average ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1.5, 3.5, 5.5, 7.5, 9.5,] ncwa test 01: Creating %tmp_fl_03% again (FAILURE netCDF4 ncrename nco821) ...................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: Creating %tmp_fl_03% again (FAILURE netCDF4 ncrename nco821) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1] ncwa test 02: normalize by denominator upper hemisphere (FAILURE netCDF4 ncrename nco821)........ !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: normalize by denominator upper hemisphere (FAILURE netCDF4 ncrename nco821) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1] ncwa test 03: return average coordinate coordinate variable during minimization for non-coordi... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: return average coordinate coordinate variable during minimization for non-coordinate variables ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [0] ncwa test 04: pass through non-averaged (i.e., non-processed) packed data to output.............. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: pass through non-averaged (i.e., non-processed) packed data to output ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1] ncwa test 05: do not normalize by denominator (FAILURE netCDF4 nco946)........................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: do not normalize by denominator (FAILURE netCDF4 nco946) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [40] ncwa test 06: average with missing value attribute............................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: average with missing value attribute ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [73] ncwa test 07: average without missing value attribute............................................ !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: average without missing value attribute ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [5.0e35] ncwa test 08: average masked coordinate.......................................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: average masked coordinate ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [90.0] ncwa test 09: average masked variable............................................................ !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: average masked variable ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [2.0] ncwa test 10: average masked, weighted coordinate................................................ !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: average masked, weighted coordinate ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [100.0] ncwa test 11: average masked, weighted variable.................................................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: average masked, weighted variable ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [666.6667] ncwa test 12: weight conforms to variable first time............................................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: weight conforms to variable first time ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [-90.0] ncwa test 13: average all missing values with weights............................................ !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: average all missing values with weights ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1.0e36] ncwa test 14: average some missing values with unity weights..................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: average some missing values with unity weights ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [1.0] ncwa test 15: average masked variable with some missing values................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: average masked variable with some missing values ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [0.5] ncwa test 16: average uniform field with uniform weights......................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: average uniform field with uniform weights ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [10] ncwa test 17: average uniform field with asymmetric weights...................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: average uniform field with asymmetric weights ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [10] ncwa test 18: average asymmetric field with asymmetric weights................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: average asymmetric field with asymmetric weights ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [10] ncwa test 19: min switch on type double, some missing values..................................... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: min switch on type double, some missing values ERR::EXPLAIN: Result: [] != Expected: [2] ncwa test 20: Dimension reduction with min switch and missing values............................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: Dimension reduction with min switch and missing values ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [-99] ncwa test 21: Dimension reduction with min switch................................................ !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: Dimension reduction with min switch ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [77] ncwa test 22: Dimension reduction on type int with min switch and missing values................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: Dimension reduction on type int with min switch and missing values ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [-99] ncwa test 23: Dimension reduction on type int variable........................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: Dimension reduction on type int variable ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [25] ncwa test 24: Dimension reduction on type short variable with min switch and missing values...... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: Dimension reduction on type short variable with min switch and missing values ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [-99] ncwa test 25: Dimension reduction on type short variable......................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: Dimension reduction on type short variable ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [29] ncwa test 26: Dimension reduction with min flag on type float variable........................... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: Dimension reduction with min flag on type float variable ERR::EXPLAIN: Result: [] != Expected: [1] ncwa test 27: Max flag on type float variable.................................................... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: Max flag on type float variable ERR::EXPLAIN: Result: [] != Expected: [240] ncwa test 28: Dimension reduction on type double variable with max switch and missing values..... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: Dimension reduction on type double variable with max switch and missing values ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [-99] ncwa test 29: Dimension reduction on type double variable........................................ !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: Dimension reduction on type double variable ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [40] ncwa test 30: Dimension reduction on type int variable with min switch and missing values........ !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: Dimension reduction on type int variable with min switch and missing values ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [-99] ncwa test 31: Dimension reduction on type int variable........................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: Dimension reduction on type int variable ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [29] ncwa test 32: Dimension reduction on type short variable with max switch and missing values...... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: Dimension reduction on type short variable with max switch and missing values ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [-99] ncwa test 33: Dimension reduction on type short, max switch variable............................. !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: Dimension reduction on type short, max switch variable ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [69] ncwa test 34: Weights at root group level........................................................ !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: Weights at root group level ERR::EXPLAIN: Result: [] != Expected: [30] ncwa test 35: weights would cause SIGFPE without dbl_prc patch................................... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: weights would cause SIGFPE without dbl_prc patch ERR::EXPLAIN: Result: [] != Expected: [1] ncwa test 36: avg would overflow without dbl_prc patch........................................... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: avg would overflow without dbl_prc patch ERR::EXPLAIN: Result: [] != Expected: [17000] ncwa test 37: test wrapped ttl with dbl_prc patch (harmless failure expected/OK on all chips s... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: test wrapped ttl with dbl_prc patch (harmless failure expected/OK on all chips since wrap behavior is not IEEE-specified) ERR::EXPLAIN: Result: [] != Expected: [-31536] ncwa test 38: min with weights................................................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: min with weights ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [-900] ncwa test 39: max with weights................................................................... !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: max with weights ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [900] ncwa test 40: Return mean time coordinate (when computing totals)................................ !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: Return mean time coordinate (when computing totals) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [5.5] ncwa test 41: Return total record (when computing totals)........................................ !!FAILED $cmd_rsl_is_nbr = 0 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: Return total record (when computing totals) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [55] ncwa test 42: Retain degenerate dimensions (one variable)........................................ ERR: FAILED in ncwa test: Retain degenerate dimensions (one variable) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [lon[0]=135] ncwa test 43: Retain degenerate dimensions (all variables)....................................... ERR: FAILED in ncwa test: Retain degenerate dimensions (all variables) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [lon[0]=135] ncwa test 44: Cell methods (Create, average) -v one,one_dmn_rec_var,three_dmn_rec_var -a time,... ERR: FAILED in ncwa test: Cell methods (Create, average) -v one,one_dmn_rec_var,three_dmn_rec_var -a time,lon ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [three_dmn_rec_var attribute 3: cell_methods, size = 15 NC_CHAR, value = time, lon: mean] ncwa test 45: Cell methods (Create, average) -v one,one_dmn_rec_var,three_dmn_rec_var -a time,... ERR: FAILED in ncwa test: Cell methods (Create, average) -v one,one_dmn_rec_var,three_dmn_rec_var -a time,lon ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [one_dmn_rec_var attribute 2: cell_methods, size = 10 NC_CHAR, value = time: mean] ncwa test 46: Cell methods (Create, maximum) -v one,one_dmn_rec_var,three_dmn_rec_var -a time,... ERR: FAILED in ncwa test: Cell methods (Create, maximum) -v one,one_dmn_rec_var,three_dmn_rec_var -a time,lon ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [three_dmn_rec_var attribute 3: cell_methods, size = 18 NC_CHAR, value = time, lon: maximum] ncwa test 47: Mask condition with negative value................................................. ERR: FAILED in ncwa test: Mask condition with negative value ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [Lat = _] ncwa test 48: Minimization on packed single-precision float...................................... ERR: FAILED in ncwa test: Minimization on packed single-precision float ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [non_rec_var_flt_pck = 100.1] ncwa test 49: Simple weights..................................................................... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncwa test: Simple weights ERR::EXPLAIN: Result: [] != Expected: [1.333333] ncwa test 50: Test mebs normalization............................................................ ERR: FAILED in ncwa test: Test mebs normalization ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [one_dmn_rec_var_flt = 5.5] ncwa test 51: Test tabs (total absolute value)................................................... ERR: FAILED in ncwa test: Test tabs (total absolute value) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [one_dmn_rec_var = 55] ncwa test 52: Test tabs on coordinate............................................................ ERR: FAILED in ncwa test: Test tabs on coordinate ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [lon = 135] ncwa test 53: Mask condition not in variable list (fixed with nco1138 20170804).................. ERR: FAILED in ncwa test: Mask condition not in variable list (fixed with nco1138 20170804) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [orog = 4] ncwa test 54: Mask condition not in variable list (mask is relative coordinate variable) (fixe... ERR: FAILED in ncwa test: Mask condition not in variable list (mask is relative coordinate variable) (fixed with nco1138 20170804) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [orog2 = 4] ncwa test 55: Mask condition not in variable list (mask is absolute coordinate variable) (fixe... ERR: FAILED in ncwa test: Mask condition not in variable list (mask is absolute coordinate variable) (fixed with nco1138 20170804) ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [orog2 = 4] ncwa test 56: Weight without mask and without hyperslab.......................................... ERR: FAILED in ncwa test: Weight without mask and without hyperslab ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [orog2 = 28] ncwa test 57: Weight without mask and with hyperslab............................................. ERR: FAILED in ncwa test: Weight without mask and with hyperslab ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [orog2 = 22] ncwa test 58: Weight with mask and with hyperslab................................................ ERR: FAILED in ncwa test: Weight with mask and with hyperslab ERR::EXPLAIN: Result: [nco_err_exit(): ERROR NCO will now exit with system call exit(EXIT_FAILURE)] != Expected: [orog2 = 16] ncrenam test 01: netCDF3: Valid values after renaming coordinate dimension in netCDF3 file.......... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncrename test: netCDF3: Valid values after renaming coordinate dimension in netCDF3 file ERR::EXPLAIN: Result: [] != Expected: [1] ncrenam test 02: netCDF3: Valid values after renaming coordinate variable in netCDF3 file........... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncrename test: netCDF3: Valid values after renaming coordinate variable in netCDF3 file ERR::EXPLAIN: Result: [] != Expected: [1] ncrenam test 03: netCDF3: Valid values after renaming coordinate dimension and variable in netCDF... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncrename test: netCDF3: Valid values after renaming coordinate dimension and variable in netCDF3 file ERR::EXPLAIN: Result: [] != Expected: [1] ncrenam test 04: netCDF4-classic: Valid values after renaming coordinate dimension in netCDF4-cla... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncrename test: netCDF4-classic: Valid values after renaming coordinate dimension in netCDF4-classic file ERR::EXPLAIN: Result: [] != Expected: [1] ncrenam test 05: netCDF4-classic: Valid values after renaming coordinate variable in netCDF4-clas... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncrename test: netCDF4-classic: Valid values after renaming coordinate variable in netCDF4-classic file ERR::EXPLAIN: Result: [] != Expected: [1] ncrenam test 06: netCDF4-classic: Valid values after renaming coordinate dimension and variable i... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncrename test: netCDF4-classic: Valid values after renaming coordinate dimension and variable in netCDF4-classic file ERR::EXPLAIN: Result: [] != Expected: [1] ncrenam test 07: netCDF4: Valid values after renaming coordinate dimension in netCDF4 file.......... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncrename test: netCDF4: Valid values after renaming coordinate dimension in netCDF4 file ERR::EXPLAIN: Result: [] != Expected: [1] ncrenam test 08: netCDF4: Valid values after renaming coordinate variable in netCDF4 file........... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncrename test: netCDF4: Valid values after renaming coordinate variable in netCDF4 file ERR::EXPLAIN: Result: [] != Expected: [1] ncrenam test 09: netCDF4: Valid values after renaming coordinate dimension and variable in netCDF... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncrename test: netCDF4: Valid values after renaming coordinate dimension and variable in netCDF4 file ERR::EXPLAIN: Result: [] != Expected: [1] ncrenam test 10: netCDF4: Simultaneously rename multiple dimensions (netCDF bug, requires Unidata... !!FAILED $cmd_rsl_is_nbr = 1 and $xpc_is_nbr = 1 ERR: FAILED in ncrename test: netCDF4: Simultaneously rename multiple dimensions (netCDF bug, requires Unidata fix https://github.com/Unidata/netcdf-c/issues/597) ERR::EXPLAIN: Result: [] != Expected: [1] Linux ionos11-amd64 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) x86_64 GNU/Linux; gcc (Debian 8.3.0-6) 8.3.0; Test Results Seconds to complete -------------------------- ---------------------------------------- Test Success Failure Total WallClock Real User System Diff ncap2: 0 18 18 0.00 0.00 0.00 0.00 0.00 ncatted: 0 7 7 2.71 0.00 0.00 0.00 0.00 ncbo: 0 15 15 0.87 0.00 0.00 0.00 0.00 ncflint: 0 5 5 0.78 0.00 0.00 0.00 0.00 nces: 0 14 14 0.31 0.00 0.00 0.00 0.00 ncecat: 0 5 5 0.00 0.00 0.00 0.00 0.00 ncks: 17 30 47 16.71 0.00 0.00 0.00 0.00 ncpdq: 0 35 35 0.00 0.00 0.00 0.00 0.00 ncra: 0 31 31 0.10 0.00 0.00 0.00 0.00 ncrcat: 0 27 27 0.76 0.00 0.00 0.00 0.00 ncrename: 0 10 10 4.10 0.00 0.00 0.00 0.00 ncwa: 0 58 58 0.41 0.00 0.00 0.00 0.00 NB:MD5: test passes MD5 checksum on file(s) May be more than one intermediate file. SVx: test passes single terminal value check SVn=numeric, SVa=alphabetic OK - data NOT sent, thanks for using NCO anyway - bye! make[2]: Leaving directory '/build/nco-4.7.9' make[1]: Leaving directory '/build/nco-4.7.9' fakeroot debian/rules binary dh binary --with autoreconf \ --buildsystem autoconf \ --parallel dh_testroot -O--buildsystem=autoconf -O--parallel dh_prep -O--buildsystem=autoconf -O--parallel debian/rules override_dh_auto_install make[1]: Entering directory '/build/nco-4.7.9' dh_auto_install make -j1 install DESTDIR=/build/nco-4.7.9/debian/nco AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/nco-4.7.9' Making install in data make[3]: Entering directory '/build/nco-4.7.9/data' make[4]: Entering directory '/build/nco-4.7.9/data' /bin/mkdir -p '/build/nco-4.7.9/debian/nco/usr/bin' /usr/bin/install -c ncclimo ncremap '/build/nco-4.7.9/debian/nco/usr/bin' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/nco-4.7.9/data' make[3]: Leaving directory '/build/nco-4.7.9/data' Making install in src make[3]: Entering directory '/build/nco-4.7.9/src' Making install in nco make[4]: Entering directory '/build/nco-4.7.9/src/nco' make[5]: Entering directory '/build/nco-4.7.9/src/nco' /bin/mkdir -p '/build/nco-4.7.9/debian/nco/usr/lib/nco' /bin/bash ../../libtool --tag=CXX --mode=install /usr/bin/install -c libnco.la '/build/nco-4.7.9/debian/nco/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/libnco-4.7.9.so /build/nco-4.7.9/debian/nco/usr/lib/nco/libnco-4.7.9.so libtool: install: (cd /build/nco-4.7.9/debian/nco/usr/lib/nco && { ln -s -f libnco-4.7.9.so libnco.so || { rm -f libnco.so && ln -s libnco-4.7.9.so libnco.so; }; }) libtool: install: /usr/bin/install -c .libs/libnco.lai /build/nco-4.7.9/debian/nco/usr/lib/nco/libnco.la libtool: warning: remember to run 'libtool --finish /usr/lib/nco' /bin/mkdir -p '/build/nco-4.7.9/debian/nco/usr/bin' /bin/bash ../../libtool --tag=CXX --mode=install /usr/bin/install -c ncatted ncbo ncecat ncflint ncks ncpdq ncra ncrename ncwa '/build/nco-4.7.9/debian/nco/usr/bin' libtool: warning: 'libnco.la' has not been installed in '/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncatted /build/nco-4.7.9/debian/nco/usr/bin/ncatted libtool: warning: 'libnco.la' has not been installed in '/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncbo /build/nco-4.7.9/debian/nco/usr/bin/ncbo libtool: warning: 'libnco.la' has not been installed in '/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncecat /build/nco-4.7.9/debian/nco/usr/bin/ncecat libtool: warning: 'libnco.la' has not been installed in '/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncflint /build/nco-4.7.9/debian/nco/usr/bin/ncflint libtool: warning: 'libnco.la' has not been installed in '/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncks /build/nco-4.7.9/debian/nco/usr/bin/ncks libtool: warning: 'libnco.la' has not been installed in '/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncpdq /build/nco-4.7.9/debian/nco/usr/bin/ncpdq libtool: warning: 'libnco.la' has not been installed in '/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncra /build/nco-4.7.9/debian/nco/usr/bin/ncra libtool: warning: 'libnco.la' has not been installed in '/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncrename /build/nco-4.7.9/debian/nco/usr/bin/ncrename libtool: warning: 'libnco.la' has not been installed in '/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncwa /build/nco-4.7.9/debian/nco/usr/bin/ncwa make install-exec-hook make[6]: Entering directory '/build/nco-4.7.9/src/nco' cd /build/nco-4.7.9/debian/nco/usr/bin && ln -s -f ncbo ncdiff || (rm -f ncdiff && ln -s -f ncbo ncdiff) cd /build/nco-4.7.9/debian/nco/usr/bin && ln -s -f ncra ncea || (rm -f ncea && ln -s -f ncra ncea) cd /build/nco-4.7.9/debian/nco/usr/bin && ln -s -f ncra nces || (rm -f nces && ln -s -f ncra nces) cd /build/nco-4.7.9/debian/nco/usr/bin && ln -s -f ncra ncrcat || (rm -f ncrcat && ln -s -f ncra ncrcat) make[6]: Leaving directory '/build/nco-4.7.9/src/nco' make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/nco-4.7.9/src/nco' make[4]: Leaving directory '/build/nco-4.7.9/src/nco' Making install in nco++ make[4]: Entering directory '/build/nco-4.7.9/src/nco++' make[5]: Entering directory '/build/nco-4.7.9/src/nco++' /bin/mkdir -p '/build/nco-4.7.9/debian/nco/usr/bin' /bin/bash ../../libtool --tag=CXX --mode=install /usr/bin/install -c ncap2 '/build/nco-4.7.9/debian/nco/usr/bin' libtool: warning: '/build/nco-4.7.9/src/nco/libnco.la' has not been installed in '/usr/lib/nco' libtool: install: /usr/bin/install -c .libs/ncap2 /build/nco-4.7.9/debian/nco/usr/bin/ncap2 make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/nco-4.7.9/src/nco++' make[4]: Leaving directory '/build/nco-4.7.9/src/nco++' make[4]: Entering directory '/build/nco-4.7.9/src' make[5]: Entering directory '/build/nco-4.7.9/src' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/nco-4.7.9/src' make[4]: Leaving directory '/build/nco-4.7.9/src' make[3]: Leaving directory '/build/nco-4.7.9/src' Making install in man make[3]: Entering directory '/build/nco-4.7.9/man' make[4]: Entering directory '/build/nco-4.7.9/man' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/nco-4.7.9/debian/nco/usr/share/man/man1' /usr/bin/install -c -m 644 ncap2.1 ncatted.1 ncbo.1 ncclimo.1 nces.1 ncecat.1 ncflint.1 ncks.1 nco.1 ncra.1 ncremap.1 ncrename.1 ncpdq.1 ncrcat.1 ncwa.1 '/build/nco-4.7.9/debian/nco/usr/share/man/man1' make[4]: Leaving directory '/build/nco-4.7.9/man' make[3]: Leaving directory '/build/nco-4.7.9/man' Making install in doc make[3]: Entering directory '/build/nco-4.7.9/doc' make[4]: Entering directory '/build/nco-4.7.9/doc' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/nco-4.7.9/debian/nco/usr/share/info' /usr/bin/install -c -m 644 ./nco.info ./nco.info-1 ./nco.info-2 ./nco.info-3 ./nco.info-4 '/build/nco-4.7.9/debian/nco/usr/share/info' make[4]: Leaving directory '/build/nco-4.7.9/doc' make[3]: Leaving directory '/build/nco-4.7.9/doc' make[3]: Entering directory '/build/nco-4.7.9' make[4]: Entering directory '/build/nco-4.7.9' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/nco-4.7.9' make[3]: Leaving directory '/build/nco-4.7.9' make[2]: Leaving directory '/build/nco-4.7.9' find /build/nco-4.7.9/debian/nco -name '*.h' -delete find /build/nco-4.7.9/debian/nco -name '*.hh' -delete rm -f debian/nco/usr/lib/nco/libnco.la rm -f debian/nco/usr/share/info/dir make[1]: Leaving directory '/build/nco-4.7.9' debian/rules override_dh_install make[1]: Entering directory '/build/nco-4.7.9' dh_install --list-missing dh_install: Please use dh_missing --list-missing/--fail-missing instead dh_install: This feature will be removed in compat 12. make[1]: Leaving directory '/build/nco-4.7.9' dh_installdocs -O--buildsystem=autoconf -O--parallel dh_installchangelogs -O--buildsystem=autoconf -O--parallel dh_installman -O--buildsystem=autoconf -O--parallel dh_installinfo -O--buildsystem=autoconf -O--parallel dh_installinit -O--buildsystem=autoconf -O--parallel dh_lintian -O--buildsystem=autoconf -O--parallel dh_perl -O--buildsystem=autoconf -O--parallel dh_link -O--buildsystem=autoconf -O--parallel dh_strip_nondeterminism -O--buildsystem=autoconf -O--parallel dh_compress -O--buildsystem=autoconf -O--parallel dh_fixperms -O--buildsystem=autoconf -O--parallel dh_missing -O--buildsystem=autoconf -O--parallel dh_strip -O--buildsystem=autoconf -O--parallel debian/rules override_dh_makeshlibs make[1]: Entering directory '/build/nco-4.7.9' dh_makeshlibs -Xusr/lib/nco make[1]: Leaving directory '/build/nco-4.7.9' dh_shlibdeps -O--buildsystem=autoconf -O--parallel dpkg-shlibdeps: warning: debian/nco/usr/lib/nco/libnco-4.7.9.so contains an unresolvable reference to symbol nco_not_mss_val_sng_get: it's probably a plugin dpkg-shlibdeps: warning: 12 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/nco/usr/lib/nco/libnco-4.7.9.so debian/nco/usr/bin/ncrename debian/nco/usr/bin/ncap2 debian/nco/usr/bin/ncflint debian/nco/usr/bin/ncra debian/nco/usr/bin/ncpdq debian/nco/usr/bin/ncbo debian/nco/usr/bin/ncwa debian/nco/usr/bin/ncatted debian/nco/usr/bin/ncks debian/nco/usr/bin/ncecat were not linked against libhdf5_serial.so.103 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/nco/usr/lib/nco/libnco-4.7.9.so debian/nco/usr/bin/ncrename debian/nco/usr/bin/ncap2 debian/nco/usr/bin/ncflint debian/nco/usr/bin/ncra debian/nco/usr/bin/ncpdq debian/nco/usr/bin/ncbo debian/nco/usr/bin/ncwa debian/nco/usr/bin/ncatted debian/nco/usr/bin/ncks debian/nco/usr/bin/ncecat were not linked against libz.so.1 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/nco/usr/lib/nco/libnco-4.7.9.so debian/nco/usr/bin/ncrename debian/nco/usr/bin/ncap2 debian/nco/usr/bin/ncflint debian/nco/usr/bin/ncra debian/nco/usr/bin/ncpdq debian/nco/usr/bin/ncbo debian/nco/usr/bin/ncwa debian/nco/usr/bin/ncatted debian/nco/usr/bin/ncks debian/nco/usr/bin/ncecat were not linked against libhdf5_serial_hl.so.100 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/nco/usr/lib/nco/libnco-4.7.9.so debian/nco/usr/bin/ncrename debian/nco/usr/bin/ncap2 debian/nco/usr/bin/ncflint debian/nco/usr/bin/ncra debian/nco/usr/bin/ncpdq debian/nco/usr/bin/ncbo debian/nco/usr/bin/ncwa debian/nco/usr/bin/ncatted debian/nco/usr/bin/ncks debian/nco/usr/bin/ncecat were not linked against libcurl-gnutls.so.4 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/nco/usr/lib/nco/libnco-4.7.9.so debian/nco/usr/bin/ncrename debian/nco/usr/bin/ncap2 debian/nco/usr/bin/ncflint debian/nco/usr/bin/ncra debian/nco/usr/bin/ncpdq debian/nco/usr/bin/ncbo debian/nco/usr/bin/ncwa debian/nco/usr/bin/ncatted debian/nco/usr/bin/ncks debian/nco/usr/bin/ncecat were not linked against libdl.so.2 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/nco/usr/lib/nco/libnco-4.7.9.so debian/nco/usr/bin/ncrename debian/nco/usr/bin/ncap2 debian/nco/usr/bin/ncflint debian/nco/usr/bin/ncra debian/nco/usr/bin/ncpdq debian/nco/usr/bin/ncbo debian/nco/usr/bin/ncwa debian/nco/usr/bin/ncatted debian/nco/usr/bin/ncks debian/nco/usr/bin/ncecat were not linked against libgslcblas.so.0 (they use none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/nco/usr/lib/nco/libnco-4.7.9.so debian/nco/usr/bin/ncrename debian/nco/usr/bin/ncap2 debian/nco/usr/bin/ncflint debian/nco/usr/bin/ncra debian/nco/usr/bin/ncpdq debian/nco/usr/bin/ncbo debian/nco/usr/bin/ncwa debian/nco/usr/bin/ncatted debian/nco/usr/bin/ncks debian/nco/usr/bin/ncecat were not linked against libsz.so.2 (they use none of the library's symbols) dh_installdeb -O--buildsystem=autoconf -O--parallel dh_gencontrol -O--buildsystem=autoconf -O--parallel dh_md5sums -O--buildsystem=autoconf -O--parallel dh_builddeb -O--buildsystem=autoconf -O--parallel dpkg-deb: building package 'nco-dbgsym' in '../nco-dbgsym_4.7.9-1_amd64.deb'. dpkg-deb: building package 'nco' in '../nco_4.7.9-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../nco_4.7.9-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/45161 and its subdirectories I: Current time: Mon Aug 9 02:27:01 -12 2021 I: pbuilder-time-stamp: 1628519221 Mon Aug 9 14:27:02 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Mon Aug 9 14:27:02 UTC 2021 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Mon Aug 9 14:29:46 UTC 2021 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Mon Aug 9 14:29:47 UTC 2021 I: nco_4.7.9-1_amd64.changes: Format: 1.8 Date: Thu, 21 Feb 2019 06:59:59 +0100 Source: nco Binary: nco nco-dbgsym Architecture: amd64 Version: 4.7.9-1 Distribution: unstable Urgency: medium Maintainer: Debian GIS Project Changed-By: Bas Couwenberg Description: nco - Command-line operators to analyze netCDF files Changes: nco (4.7.9-1) unstable; urgency=medium . * New upstream release. * Bump Standards-Version to 4.3.0, no changes. Checksums-Sha1: e984d3445ba5eda7a7947a9966e1ea20065c0b59 6029164 nco-dbgsym_4.7.9-1_amd64.deb 8ef657b01273553ea3a8c9f79b062541639da936 7648 nco_4.7.9-1_amd64.buildinfo f976d05efc9b915401466ba5888d6d56ce4d42f5 1827484 nco_4.7.9-1_amd64.deb Checksums-Sha256: 39b1dba942bfca7cca4a197286a31107525f5acdc23227df8f8f902ae5f8fe84 6029164 nco-dbgsym_4.7.9-1_amd64.deb fab5cafbe71a8845a92257f08cd8ca6cf7aea326032c1959e314604ece5f1736 7648 nco_4.7.9-1_amd64.buildinfo 10bd365c8c4c728cb8a32835bd11b772c59b98aa2329a59613378081010625e3 1827484 nco_4.7.9-1_amd64.deb Files: 4f9e62fee829b279047b585e34305c20 6029164 debug optional nco-dbgsym_4.7.9-1_amd64.deb ca53c3df204d75e5e3aa38e75c803825 7648 science optional nco_4.7.9-1_amd64.buildinfo 83c3852434a0504325aec3a0d47b380b 1827484 science optional nco_4.7.9-1_amd64.deb Mon Aug 9 14:29:48 UTC 2021 I: diffoscope 180 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.HkElpbzZXP/nco_4.7.9-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.HkElpbzZXP/nco_4.7.9-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.HkElpbzZXP/nco_4.7.9-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.HkElpbzZXP/b1/nco_4.7.9-1_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.HkElpbzZXP/b2/nco_4.7.9-1_amd64.changes ## close_archive (total time: 0.001s) 0.000s 18 calls diffoscope.comparators.xz.XzContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 100.178s) 39.208s 915 calls readelf 39.010s 110 calls diff 17.650s 176 calls objdump 2.460s 18 calls xz 1.484s 2 calls objcopy 0.347s 22 calls strings 0.009s 1 call cmp 0.009s 1 call cmp (external) 0.002s 22 calls cmp (internal) ## compare_files (cumulative) (total time: 265.445s) 50.604s 1 call abc.DotChangesFile 50.554s 2 calls abc.DebFile 50.385s 4 calls abc.XzFile 48.694s 2 calls abc.DebDataTarFile 48.277s 2 calls abc.ElfFile 14.522s 10 calls diffoscope.comparators.elf.ElfCodeSection 1.851s 29 calls diffoscope.comparators.elf.ElfSection 0.262s 2 calls diffoscope.comparators.elf.ElfStringSection 0.197s 2 calls abc.TarFile 0.040s 1 call abc.TextFile 0.034s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection 0.026s 2 calls abc.Md5sumsFile ## container_extract (total time: 2.681s) 2.462s 18 calls diffoscope.comparators.xz.XzContainer 0.116s 108 calls diffoscope.comparators.deb.DebTarContainer 0.091s 22 calls diffoscope.comparators.deb.DebContainer 0.011s 16 calls diffoscope.comparators.tar.TarContainer ## has_same_content_as (total time: 0.014s) 0.010s 2 calls abc.DebDataTarFile 0.001s 6 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.001s 4 calls abc.TextFile 0.001s 4 calls abc.Md5sumsFile 0.001s 4 calls abc.XzFile 0.000s 2 calls abc.TarFile 0.000s 2 calls abc.ElfFile 0.000s 29 calls diffoscope.comparators.elf.ElfSection 0.000s 2 calls abc.DebFile 0.000s 1 call abc.DotChangesFile 0.000s 10 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 2 calls diffoscope.comparators.elf.ElfStringSection 0.000s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 113.268s) 113.267s 2 calls outputs 0.000s 1 call cleanup ## open_archive (total time: 0.001s) 0.000s 18 calls diffoscope.comparators.xz.XzContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 62.306s) 62.093s 1 call html 0.121s 1 call text 0.092s 1 call json ## recognizes (total time: 2.453s) 1.105s 714 calls diffoscope.comparators.utils.archive.ArchiveMember 0.507s 580 calls diffoscope.comparators.elf.ElfSection 0.437s 1486 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.161s 200 calls diffoscope.comparators.elf.ElfCodeSection 0.121s 10 calls diffoscope.comparators.binary.FilesystemFile 0.084s 192 calls diffoscope.comparators.debian.DebControlMember 0.035s 40 calls diffoscope.comparators.elf.ElfStringSection 0.002s 20 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.000s 28 calls abc.Md5sumsFile 0.000s 24 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 8 calls abc.DotChangesFile Mon Aug 9 14:31:42 UTC 2021 E: nco failed to build reproducibly in buster on amd64. Mon Aug 9 14:31:47 UTC 2021 I: Submitting .buildinfo files to external archives: Mon Aug 9 14:31:47 UTC 2021 I: Submitting 12K b1/nco_4.7.9-1_amd64.buildinfo.asc Mon Aug 9 14:31:48 UTC 2021 I: Submitting 12K b2/nco_4.7.9-1_amd64.buildinfo.asc Mon Aug 9 14:31:49 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Aug 9 14:31:49 UTC 2021 I: Done submitting .buildinfo files. Mon Aug 9 14:31:49 UTC 2021 I: Removing signed nco_4.7.9-1_amd64.buildinfo.asc files: removed './b1/nco_4.7.9-1_amd64.buildinfo.asc' removed './b2/nco_4.7.9-1_amd64.buildinfo.asc'