Fri Jan 15 22:43:10 UTC 2021 I: starting to build mapsembler2/buster/amd64 on jenkins on '2021-01-15 22:43' Fri Jan 15 22:43:10 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_1/2492/console.log Fri Jan 15 22:43:10 UTC 2021 I: Downloading source for buster/mapsembler2=2.2.4+dfsg-3 --2021-01-15 22:43:10-- http://deb.debian.org/debian/pool/main/m/mapsembler2/mapsembler2_2.2.4+dfsg-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2268 (2.2K) Saving to: ‘mapsembler2_2.2.4+dfsg-3.dsc’ 0K .. 100% 30.6M=0s 2021-01-15 22:43:11 (30.6 MB/s) - ‘mapsembler2_2.2.4+dfsg-3.dsc’ saved [2268/2268] Fri Jan 15 22:43:11 UTC 2021 I: mapsembler2_2.2.4+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: mapsembler2 Binary: mapsembler2 Architecture: amd64 arm64 armel armhf hurd-i386 i386 kfreebsd-amd64 kfreebsd-i386 ppc64el s390x Version: 2.2.4+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille Homepage: http://colibread.inria.fr/mapsembler2/ Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/mapsembler2 Vcs-Git: https://salsa.debian.org/med-team/mapsembler2.git Build-Depends: debhelper (>= 11~), cmake, bc, zlib1g-dev, libhdf5-dev, libcppunit-dev, libboost-dev Package-List: mapsembler2 deb science optional arch=amd64,arm64,armel,armhf,hurd-i386,i386,kfreebsd-amd64,kfreebsd-i386,ppc64el,s390x Checksums-Sha1: b5927a94356ea19b8e867a28dae76c1a433a7712 1388700 mapsembler2_2.2.4+dfsg.orig.tar.xz 2498024c03c89612af4280cee4094399988a8e40 12544 mapsembler2_2.2.4+dfsg-3.debian.tar.xz Checksums-Sha256: 5a3c581d9408e103f3e721ce85293cbc3af96392b05e0adfaff95753e784371c 1388700 mapsembler2_2.2.4+dfsg.orig.tar.xz b82bb0e0eba62e37da9ccaefdf1b47e4d45a36a1facb6c01ac0a47af86730b0e 12544 mapsembler2_2.2.4+dfsg-3.debian.tar.xz Files: d370f8b8eca863ff6beb96820e7760c6 1388700 mapsembler2_2.2.4+dfsg.orig.tar.xz d05b16e64a1662a89a91bd7806e29802 12544 mapsembler2_2.2.4+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlvdPvERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtE33xAAmOPIUDC3HnPuAWr/yxRNb5nns4f+TQUV VW1GnicPBymS5Jz05SusoG7fHP5s+GQNj0FqrZA8v67cVAYKm3ernOVR3qMHzV2A avCK4vLbdpa2OEru2TpQrVWfPyhNpdRFYO8Om4yiz08tGVB6MW7odsm44ApGwhif 1dn2pk23/2ex87p10pPJe7nQgX+3rx1GxlFaaBlwZkSPla9NYI5c/kO42MkvcWOt imeU9OXfKijFw02vnLKkcZsPK7UiYKun7kiCD0aFNkHy3+xvGuR9HmQ5i7Jh33aA 9o+HCHyayMeiovRWyPnSA+fiXbEbNUrmUC42NHaoqZu4BNYUPJ2y/V9H38HSrHa8 nrHLAHAIL5EIuwsDUk6l5iK7qWJZmEJK4HnjfSMBb/txnLgv5NzT+VyV3wlXK2Tr ud88/ymH4KuKwV6yTqskj/K+H6Jwj7+qxq1HgXxJANj1bL5MMUHEipcWKZYLtyfq Lf00HxF1lDC0nGU9szjrK3AABJsSWcUK53o+OXXn7ZIvSEhwElQgo9Hm9ruDhaq1 JzZppNUzKRbLTSxIyFHaRj1IcU9uY7JkTA385FKu7r99CitwQi4b5T4N9ofSmx5S B4/raJLoSX7BOkg37kO9/vX8DjSEcIYof3EuCq/flE4/gdAaDOsiSJWZ2fwn1BEg iJDryvl1bkE= =nP3D -----END PGP SIGNATURE----- Fri Jan 15 22:43:11 UTC 2021 I: Checking whether the package is not for us Fri Jan 15 22:43:11 UTC 2021 I: Starting 1st build on remote node ionos1-amd64.debian.net. Fri Jan 15 22:43:11 UTC 2021 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Fri Jan 15 22:54:06 UTC 2021 I: Deleting $TMPDIR on ionos1-amd64.debian.net. W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build I: Current time: Fri Jan 15 10:43:14 -12 2021 I: pbuilder-time-stamp: 1610750594 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mapsembler2_2.2.4+dfsg-3.dsc] I: copying [./mapsembler2_2.2.4+dfsg.orig.tar.xz] I: copying [./mapsembler2_2.2.4+dfsg-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Nov 2 18:23:45 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mapsembler2_2.2.4+dfsg-3.dsc dpkg-source: info: extracting mapsembler2 in mapsembler2-2.2.4+dfsg dpkg-source: info: unpacking mapsembler2_2.2.4+dfsg.orig.tar.xz dpkg-source: info: unpacking mapsembler2_2.2.4+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_libs dpkg-source: info: applying run_pipeline dpkg-source: info: applying add_hardening dpkg-source: info: applying skip_mphe dpkg-source: info: applying gcc-5.patch dpkg-source: info: applying libgomp.patch dpkg-source: info: applying spelling.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/41264/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='41264' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.l0nxrPNotr/pbuilderrc_FW9H --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.l0nxrPNotr/b1 --logfile b1/build.log mapsembler2_2.2.4+dfsg-3.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/sbin/chroot' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 4.19.0-13-amd64 #1 SMP Debian 4.19.160-2 (2020-11-28) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jan 6 20:26 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/41264/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), cmake, bc, zlib1g-dev, libhdf5-dev, libcppunit-dev, libboost-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on bc; however: Package bc is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libcppunit-dev; however: Package libcppunit-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bc{a} bsdmainutils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13{a} libboost-dev{a} libboost1.67-dev{a} libbsd0{a} libcppunit-1.14-0{a} libcppunit-dev{a} libcroco3{a} libcurl4{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libgssapi-krb5-2{a} libhdf5-103{a} libhdf5-cpp-103{a} libhdf5-dev{a} libicu63{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjsoncpp1{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.4-2{a} libldap-common{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps7{a} libpsl5{a} libreadline7{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libssl1.1{a} libsz2{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} lsb-base{a} m4{a} man-db{a} po-debconf{a} procps{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix shared-mime-info wget xdg-user-dirs 0 packages upgraded, 77 newly installed, 0 to remove and 0 not upgraded. Need to get 42.9 MB of archives. After unpacking 261 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 libprocps7 amd64 2:3.3.15-2 [61.7 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 procps amd64 2:3.3.15-2 [259 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u1 [242 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u1 [117 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u1 [66.4 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 bc amd64 1.07.1-2+b1 [109 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 cmake-data all 3.13.4-1 [1476 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u1 [689 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libarchive13 amd64 3.3.3-4+deb10u1 [313 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u1 [65.8 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u1 [122 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u3 [1538 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u1 [369 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u1 [158 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u1 [69.1 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u1 [106 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u4 [89.8 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u4 [224 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 libcurl4 amd64 7.64.0-4+deb10u1 [331 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 librhash0 amd64 1.3.8-1 [122 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 libuv1 amd64 1.24.1-1 [110 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 cmake amd64 3.13.4-1 [3480 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u2 [1258 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 hdf5-helpers amd64 1.10.4+repack-10 [35.2 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 libaec0 amd64 1.0.2-1 [20.1 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 libsz2 amd64 1.0.2-1 [6676 B] Get: 65 http://deb.debian.org/debian buster/main amd64 libaec-dev amd64 1.0.2-1 [18.4 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 libboost1.67-dev amd64 1.67.0-13+deb10u1 [8388 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 libboost-dev amd64 1.67.0.1 [3864 B] Get: 68 http://deb.debian.org/debian buster/main amd64 libcppunit-1.14-0 amd64 1.14.0-3 [140 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 libcppunit-dev amd64 1.14.0-3 [196 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 libhdf5-103 amd64 1.10.4+repack-10 [1325 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 libhdf5-cpp-103 amd64 1.10.4+repack-10 [146 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1 [214 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo-dev amd64 1:1.5.2-2+deb10u1 [208 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 libjpeg-dev all 1:1.5.2-2+deb10u1 [57.7 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 libhdf5-dev amd64 1.10.4+repack-10 [2598 kB] Fetched 42.9 MB in 1s (32.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../06-libncurses6_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package libprocps7:amd64. Preparing to unpack .../07-libprocps7_2%3a3.3.15-2_amd64.deb ... Unpacking libprocps7:amd64 (2:3.3.15-2) ... Selecting previously unselected package lsb-base. Preparing to unpack .../08-lsb-base_10.2019051400_all.deb ... 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Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libcppunit-1.14-0:amd64 (1.14.0-3) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1d-0+deb10u3) ... Setting up libprocps7:amd64 (2:3.3.15-2) ... Setting up libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Setting up libmagic1:amd64 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u4) ... Setting up libaec0:amd64 (1.0.2-1) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up libkrb5support0:amd64 (1.17-3+deb10u1) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libuv1:amd64 (1.24.1-1) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.5.2-2+deb10u1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libk5crypto3:amd64 (1.17-3+deb10u1) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u1) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1) ... Setting up sensible-utils (0.0.12) ... Setting up librhash0:amd64 (1.3.8-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up cmake-data (3.13.4-1) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u1) ... Setting up libboost-dev:amd64 (1.67.0.1) ... Setting up libcppunit-dev (1.14.0-3) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u1) ... Setting up libsz2:amd64 (1.0.2-1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up libarchive13:amd64 (3.3.3-4+deb10u1) ... Setting up libaec-dev:amd64 (1.0.2-1) ... Setting up libjpeg-dev (1:1.5.2-2+deb10u1) ... Setting up bc (1.07.1-2+b1) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u4) ... Setting up m4 (1.4.18-2) ... Setting up libhdf5-103:amd64 (1.10.4+repack-10) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u1) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up libcurl4:amd64 (7.64.0-4+deb10u1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libhdf5-cpp-103:amd64 (1.10.4+repack-10) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libhdf5-dev (1.10.4+repack-10) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up cmake (3.13.4-1) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/mapsembler2-2.2.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package mapsembler2 dpkg-buildpackage: info: source version 2.2.4+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/mapsembler2-2.2.4+dfsg' rm -rf mapsembler2_extremities/build cd mapsembler2_extend && make clean make[2]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend' rm -rf *.o ../minia/*.o read_coherence_mapsembler/*.o make[2]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend' rm -f mapsembler2_extend/mapsembler_extend cd kissreads_graph && make clean make[2]: Entering directory '/build/mapsembler2-2.2.4+dfsg/kissreads_graph' rm -rf kissreads_graph *.o read_coherence_mapsembler/*.o ../minia/*.o make[2]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/kissreads_graph' rm -f kissreads_graph/mapsembler2_kissreads_graph cd kissreads && make clean make[2]: Entering directory '/build/mapsembler2-2.2.4+dfsg/kissreads' rm -rf ./src/*.o kissreads make[2]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/kissreads' rm -f kissreads/mapsembler2_kissreads dh_clean make[1]: Leaving directory '/build/mapsembler2-2.2.4+dfsg' debian/rules build dh build dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/mapsembler2-2.2.4+dfsg' mkdir mapsembler2_extremities/build cd mapsembler2_extremities/build && cmake .. && make -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test SHARED_PTR_USE_TR1_MEMORY -- Performing Test SHARED_PTR_USE_TR1_MEMORY - Success -- Performing Test SHARED_PTR_USE_MEMORY -- Performing Test SHARED_PTR_USE_MEMORY - Success -- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP -- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP - Success -- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP -- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP - Success -- gatb-core is here '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core' -- CppUnit: found headers (in /usr/include) but not the library... -- CppUnit NOT FOUND -- Found Perl: /usr/bin/perl (found version "5.28.1") -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of __uint128 -- Check size of __uint128 - failed CMake Warning (dev) at thirdparty/gatb-core/cmake/DefineInteger.cmake:11 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "HAVE_int128_t_USE__uint128" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): thirdparty/gatb-core/cmake/DefineInteger.cmake:33 (Check_Int128) thirdparty/gatb-core/CMakeLists.txt:39 (DefineInteger) This warning is for project developers. Use -Wno-dev to suppress it. -- Check size of __uint128_t -- Check size of __uint128_t - done CMake Warning (dev) at thirdparty/gatb-core/cmake/DefineInteger.cmake:12 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "int128_t_USE__uint128_t" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): thirdparty/gatb-core/cmake/DefineInteger.cmake:34 (Check_Int128) thirdparty/gatb-core/CMakeLists.txt:39 (DefineInteger) This warning is for project developers. Use -Wno-dev to suppress it. ------------------------------------------------------------------------------------- -- C++ EXTENSIONS WILL BE USED... ------------------------------------------------------------------------------------- -- Options: -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -- SUPPORTED KMER SIZES ARE 32 64 96 128 -- ---------- GATB TOOLS ---------- -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- ---------- GATB EXAMPLES ---------- -- Add compilation option -DUNORDERED_MAP_TR1_FOUND=1 -- Configuring done CMake Warning (dev) at thirdparty/gatb-core/CMakeLists.txt:221 (ADD_DEPENDENCIES): Policy CMP0046 is not set: Error on non-existent dependency in add_dependencies. Run "cmake --help-policy CMP0046" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The dependency target "hdf5" of target "gatbcore-static" does not exist. This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done -- Build files have been written to: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build make[2]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[3]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' Scanning dependencies of target gatbcore-static make[4]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [ 0%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o [ 3%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ [ 3%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ [ 7%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ [ 7%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o [ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o [ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o [ 14%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o [ 14%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] [ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ [ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function 'static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(gatb::core::bank::IBank*, const char*, ...)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:566:15: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function 'static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(const char*, ...)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:590:15: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:30: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 21%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ [ 21%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:24: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In member function 'gatb::core::debruijn::impl::Path gatb::core::debruijn::impl::MonumentTraversal::most_abundant_consensus(std::set&)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:772:20: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] printf("path: %s mean abundance: %d\n",p_str.c_str(),mean_abundance); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~ [ 25%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 25%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o [ 28%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<4>]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<3>]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<2>]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<1>]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] [ 28%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MPHF.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ [ 32%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o [ 35%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:31, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ [ 35%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ [ 39%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<1>]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 39%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<2>]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<3>]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 42%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<4>]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.hpp:32, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] strerror_r (errno, buffer, BUFSIZ); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ [ 46%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o [ 50%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o [ 50%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o [ 53%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o [ 53%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o [ 57%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o [ 57%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o [ 60%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o [ 60%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o [ 64%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o [ 64%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o [ 67%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp:23: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::__cxx11::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 67%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o [ 71%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Property.cpp: In member function 'virtual void gatb::core::tools::misc::impl::Properties::setInt(const string&, const int64_t&)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Property.cpp:397:39: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'int64_t' {aka 'long int'} [-Wformat=] snprintf (buffer, sizeof(buffer), "%lld", value); ^~~~~~ ~~~~~ [ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o [ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o [ 78%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o [ 78%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o [ 82%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~ /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:16: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __va_list_tag*)', declared with attribute warn_unused_result [-Wunused-result] vasprintf (&buffer, fmt, args); ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 82%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o [ 85%] Linking CXX static library ../lib/libgatbcore.a make[4]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [ 85%] Built target gatbcore-static make[4]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' Scanning dependencies of target mapsembler2_extremities make[4]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [ 89%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/src/main.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ [ 89%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/src/mapsembler2_extremities.cpp:13: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ [ 92%] Linking CXX executable mapsembler2_extremities make[4]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [ 92%] Built target mapsembler2_extremities make[4]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' Scanning dependencies of target dbginfo make[4]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [ 96%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/tools/dbginfo.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ [ 96%] Linking CXX executable ../bin/dbginfo make[4]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [ 96%] Built target dbginfo make[4]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' Scanning dependencies of target dbgh5 make[4]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [100%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o In file included from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp:20: /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] } ^ [100%] Linking CXX executable ../bin/dbgh5 make[4]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [100%] Built target dbgh5 make[4]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' Scanning dependencies of target emphf_copyasis make[4]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[4]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[4]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' [100%] Built target emphf_copyasis make[3]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' make[2]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extremities/build' cd mapsembler2_extend && make k=29 make[2]: Entering directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend' g++ -o ../minia/Pool.o -c ../minia/Pool.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Bank.o -c ../minia/Bank.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Bank.cpp: In member function 'void Bank::init(char**, int)': ../minia/Bank.cpp:282:19: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] strerror_r( errno, buffer, BUFSIZ ); // get string message from errno ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function 'void BinaryBank::open(bool)': ../minia/Bank.cpp:713:19: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] strerror_r( errno, buffer, BUFSIZ ); // get string message from errno ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function 'void BinaryReads::open(bool)': ../minia/Bank.cpp:798:19: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] strerror_r( errno, buffer, BUFSIZ ); // get string message from errno ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function 'int KmersBuffer::readkmers()': ../minia/Bank.cpp:988:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(buffer,sizeof( char),block_size, binary_read_file); // read a block of sequences into the buffer ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Bloom.o -c ../minia/Bloom.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Bloom.cpp: In member function 'void Bloom::load(char*)': ../minia/Bloom.cpp:256:9: warning: format '%lli' expects argument of type 'long long int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] printf("loading bloom filter from file, nelem %lli \n",nchar); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~ ../minia/Bloom.cpp:257:7: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(blooma, sizeof(unsigned char), nchar, file_data); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Hash16.o -c ../minia/Hash16.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Terminator.o -c ../minia/Terminator.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Terminator.cpp: In constructor 'BranchingTerminator::BranchingTerminator(BinaryBank*, uint64_t, Bloom*, Set*)': ../minia/Terminator.cpp:275:29: warning: format '%lld' expects argument of type 'long long int', but argument 5 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] fprintf (stderr,"%cExtrapolating the number of branching kmers from the first %dM kmers: %lld",13,(int)ceilf(nb_extrapolation/1024.0/1024.0),estimated_nb_branching_kmers); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Terminator.cpp:303:58: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'int64_t' {aka 'long int'} [-Wformat=] if ((nb_branching_kmers%500)==0) fprintf (stderr,"%cIndexing branching kmers %lld / ~%lld",13,nb_branching_kmers,estimated_nb_branching_kmers); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~ ../minia/Terminator.cpp:303:58: warning: format '%lld' expects argument of type 'long long int', but argument 5 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] ../minia/Terminator.cpp: In constructor 'BranchingTerminator::BranchingTerminator(BinaryBank*, BinaryBank*, Bloom*, Set*)': ../minia/Terminator.cpp:337:25: warning: format '%lld' expects argument of type 'long long int', but argument 3 has type 'int64_t' {aka 'long int'} [-Wformat=] fprintf (stderr,"\nLoaded %lld branching kmers x %lu B = %.1f MB\n",nb_branching_kmers,sizeof(cell),((1<)*1.0)/1024.0/1024.0); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Kmer.o -c ../minia/Kmer.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Traversal.o -c ../minia/Traversal.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/LinearCounter.o -c ../minia/LinearCounter.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o ../minia/Set.o -c ../minia/Set.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Set.cpp: In member function 'void AssocPairedSet::load(char*)': ../minia/Set.cpp:290:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&liste_value[0], sizeof(pair_nt_kmer_t), liste_value.size(), file_data); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Utils.o -c ../minia/Utils.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Utils.cpp: In function 'uint64_t extrapolate_distinct_kmers_wrapped(long unsigned int, Bank*)': ../minia/Utils.cpp:434:112: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'int64_t' {aka 'long int'} [-Wformat=] if ((NbRead%10000)==0) fprintf (stderr,(char*)"%cExtrapolating number of distinct kmers %lld",13,NbRead); ~~~~~~^ ../minia/Utils.cpp: In instantiation of 'Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]': ../minia/Utils.cpp:167:85: required from here ../minia/Utils.cpp:121:16: warning: format '%lli' expects argument of type 'long long int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] printf("load bloom from dump, containing %lli solid kmers b1_size %lli\n",nsolids,b1_size); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~ ../minia/Utils.cpp:121:16: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] ../minia/Utils.cpp: In function 'void end_kmer_count_partition(bool, Hash16*)': ../minia/Utils.cpp:187:14: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] ftruncate(fileno(F_kmercpt_write), 0); //erase previous file ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:199:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&cptk, sizeof(cptk), 1, F_kmercpt_read); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:225:18: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] ftruncate(fileno(F_kmercpt_read), 0); //erase previous file ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function 'char* return_file_name(const char*)': ../minia/Utils.cpp:28:26: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf(fileName,"%s.%s",prefix,suffix); ^~~~~~~ In file included from /usr/include/stdio.h:873, from ../minia/Utils.h:1, from ../minia/Utils.cpp:1: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 1025) into a destination of size 1024 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/SortingCount.o -c ../minia/SortingCount.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/SortingCount.cpp: In function 'void sorting_count(Bank*, char*, int, int, bool, int, bool)': ../minia/SortingCount.cpp:56:15: warning: ignoring return value of 'char* getcwd(char*, size_t)', declared with attribute warn_unused_result [-Wunused-result] getcwd(current_path,sizeof(current_path)); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp:283:15: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] system("echo 3 > /proc/sys/vm/drop_caches"); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp:537:19: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] system("echo 3 > /proc/sys/vm/drop_caches"); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp:45:24: warning: '%s' directive writing up to 1023 bytes into a region of size 512 [-Wformat-overflow=] sprintf(p_buf, "%s/%s", temp_dir, ep->d_name); ^~~~~~~ ~~~~~~~~ In file included from /usr/include/stdio.h:873, from ../minia/SortingCount.h:1, from ../minia/SortingCount.cpp:1: /usr/include/x86_64-linux-gnu/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 2 and 1280 bytes into a destination of size 512 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Debloom.o -c ../minia/Debloom.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Debloom.cpp: In function 'int debloom(int, int)': ../minia/Debloom.cpp:154:53: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] if ((NbSolidKmer%10000)==0) fprintf (stderr,"%c Writing positive Bloom Kmers %lld",13,NbSolidKmer); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~ ../minia/Debloom.cpp:158:20: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] fprintf(stderr,"\n%lli kmers written\n",cc); ^~~~~~~~~~~~~~~~~~~~~~~~ ~~ ../minia/Debloom.cpp:191:53: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] if ((NbSolidKmer%10000)==0) fprintf (stderr,"%cBuild Hash table %lld",13,NbSolidKmer); ^~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~ ../minia/Debloom.cpp:195:28: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] fprintf(stderr,"End of debloom partition %lli / %lld \n",hasht1->nb_elem,max_kmer_per_part); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~ ../minia/Debloom.cpp:195:28: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] ../minia/Debloom.cpp:208:28: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] fprintf(stderr,"\n%lli false positives written , partition %i \n",n_false_positives,numpart); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~ ../minia/Debloom.cpp:225:20: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] fprintf(stderr,"Total nb false positives stored in the Debloom hashtable %lli \n",n_false_positives); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~~~ ../minia/Debloom.cpp: In function 'Set* load_false_positives()': ../minia/Debloom.cpp:280:133: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'int64_t' {aka 'long int'} [-Wformat=] if ((NbInsertedKmers%10000)==0) fprintf (stderr,(char*)"%cInsert false positive Kmers in hash table %lld",13,NbInsertedKmers); ~~~~~~~~~~~~~~~^ ../minia/Debloom.cpp:284:21: warning: format '%lld' expects argument of type 'long long int', but argument 3 has type 'int64_t' {aka 'long int'} [-Wformat=] fprintf (stderr,"\nInserted %lld false positive kmers in the hash structure.\n\n",NbInsertedKmers); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~~ ../minia/Debloom.cpp: In function 'void print_size_summary(FPSet*)': ../minia/Debloom.cpp:445:19: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] fprintf(stderr, "Size of the FP table : %lli FP x %d bits = %.2lf MB \n", fp->capacity(), bits_per_FP_element, toMB((double)(size_T1)) ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~~ ../minia/Debloom.cpp:448:18: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ ../minia/Debloom.cpp: In function 'void print_size_summary(FPSetCascading4*)': ../minia/Debloom.cpp:465:18: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ ../minia/Debloom.cpp: In function 'void end_debloom_partition(bool)': ../minia/Debloom.cpp:29:11: warning: ignoring return value of 'int ftruncate(int, __off_t)', declared with attribute warn_unused_result [-Wunused-result] ftruncate(fileno(F_debloom_write), 0); //erase previous file ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/OAHash.o -c ../minia/OAHash.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o commons.o -c commons.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o IterativeExtensions.o -c IterativeExtensions.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o Fragment_Bank.o -c Fragment_Bank.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o Fragment.o -c Fragment.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o GraphOutput.o -c GraphOutput.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial g++ -o mapsembler_extend ../minia/Pool.o ../minia/Bank.o ../minia/Bloom.o ../minia/Hash16.o ../minia/Terminator.o ../minia/Kmer.o ../minia/Traversal.o ../minia/LinearCounter.o ../minia/Set.o ../minia/Utils.o ../minia/SortingCount.o ../minia/Debloom.o ../minia/OAHash.o commons.o IterativeExtensions.o Fragment_Bank.o Fragment.o GraphOutput.o mapsembler_extend.cpp -O3 -lz --std=c++11 -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial mapsembler_extend.cpp: In function 'int main(int, char**)': mapsembler_extend.cpp:145:24: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'int64_t' {aka 'long int'} [-Wformat=] printf(" Will use genome_size=%llu\n", genome_size); //TODO format ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~ mapsembler_extend.cpp:320:76: warning: ignoring return value of 'int system(const char*)', declared with attribute warn_unused_result [-Wunused-result] command = string("rm -f ")+string(prefix_trashable)+string("*"); system((char *)command.c_str()); ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/mapsembler2_extend' cd kissreads_graph && make k=29 make[2]: Entering directory '/build/mapsembler2-2.2.4+dfsg/kissreads_graph' g++ -o block_allocator.o -c block_allocator.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o DeBruijnGraph.o -c DeBruijnGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 DeBruijnGraph.cpp: In member function 'void DBG::index_nodes()': DeBruijnGraph.cpp:952:12: warning: format '%lli' expects argument of type 'long long int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] printf("total seeds in fragments %lli size %lli MB \n",total_seeds,total_seeds*sizeof(couple)/1024LL/1024LL); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~ g++ -o Fragment.o -c Fragment.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o json.o -c json.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/libchash.o -c read_coherence_mapsembler/libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFind(HashTable*, u_long)': read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL' READ_UL((ht)->fpData, cchData); \ ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1227:3: note: in expansion of macro 'LOAD_AND_RETURN' LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFindLast(HashTable*)': read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL' READ_UL((ht)->fpData, cchData); \ ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1232:4: note: in expansion of macro 'LOAD_AND_RETURN' LOAD_AND_RETURN(ht, ht->posLastFind); ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFirstBucket(HashTable*)': read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL' READ_UL((ht)->fpData, cchData); \ ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1296:3: note: in expansion of macro 'LOAD_AND_RETURN' LOAD_AND_RETURN(ht, retval); ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashNextBucket(HashTable*)': read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL' READ_UL((ht)->fpData, cchData); \ ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1306:3: note: in expansion of macro 'LOAD_AND_RETURN' LOAD_AND_RETURN(ht, retval); ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function 'HashTable* HashDoLoad(FILE*, char* (*)(FILE*, int), HashTable*)': read_coherence_mapsembler/libchash.cpp:1413:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(szMagicKey, 1, 4, fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1422:4: note: in expansion of macro 'READ_UL' READ_UL(fp, ht->cchKey); ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1423:4: note: in expansion of macro 'READ_UL' READ_UL(fp, ht->cItems); ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1424:4: note: in expansion of macro 'READ_UL' READ_UL(fp, ht->cDeletedItems); ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1427:4: note: in expansion of macro 'READ_UL' READ_UL(fp, cchKey); ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1429:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(rgchKeys, 1, cchKey, fp); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1434:7: note: in expansion of macro 'READ_UL' READ_UL(fp, bck->data); /* all we need if dataRead is NULL */ ^~~~~~~ read_coherence_mapsembler/libchash.cpp: In function 'u_long SparseRead(FILE*, SparseBin**)': read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:628:4: note: in expansion of macro 'READ_UL' READ_UL(fp, cBuckets); /* actually, cBuckets is stored */ ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:633:3: note: in expansion of macro 'READ_UL' READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); ^~~~~~~ g++ -o read_coherence_mapsembler/couple.o -c read_coherence_mapsembler/couple.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/misc_tools.o -c read_coherence_mapsembler/misc_tools.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/read_groups.o -c read_coherence_mapsembler/read_groups.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/consensus_common.o -c read_coherence_mapsembler/consensus_common.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/list.o -c read_coherence_mapsembler/list.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o read_coherence_mapsembler/read_coherence.o -c read_coherence_mapsembler/read_coherence.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 read_coherence_mapsembler/read_coherence.cpp: In function 'char** read_coherent_homologs(hash_t, const char*, int, int, int, int, int*)': read_coherence_mapsembler/read_coherence.cpp:988:25: warning: format '%X' expects argument of type 'unsigned int', but argument 3 has type 'group_t' {aka 'list_*'} [-Wformat=] "error group %X: recomputed number of substitutions (%d) not matching dynamic number of substitutions (%d) (so i'm glad i coded this test)\n fragment: %s\nconsensus:%s\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ current_read_group, number_substitutions, ~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/read_coherence.cpp:1002:25: warning: format '%X' expects argument of type 'unsigned int', but argument 3 has type 'group_t' {aka 'list_*'} [-Wformat=] "error group %X: recomputed consensus (%s) not matching dynamic consensus (%s) (so i'm glad i coded this test)\n fragment: %s\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ current_read_group, substarters[*nb_consensuses], ~~~~~~~~~~~~~~~~~~ g++ -o read_coherence_mapsembler/interface_libchash.o -c read_coherence_mapsembler/interface_libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 read_coherence_mapsembler/interface_libchash.cpp: In function 'void iterate_and_fill_offsets(hash_t)': read_coherence_mapsembler/interface_libchash.cpp:408:12: warning: format '%lli' expects argument of type 'long long int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] printf("total nb diff seeds %lli (should use %lli MB) \n",nbdiffseeds,(nbdiffseeds*16)/1024/1024); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~ read_coherence_mapsembler/interface_libchash.cpp:408:12: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] g++ -o commons.o -c commons.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o Loader.o -c Loader.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 g++ -o ReadMapper.o -c ReadMapper.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 ReadMapper.cpp: In function 'uint64_t map_reads(Bank*, std::vector)': ReadMapper.cpp:38:24: warning: format '%lld' expects argument of type 'long long int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ ReadMapper.cpp:38:24: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] ReadMapper.cpp:240:16: warning: format '%lld' expects argument of type 'long long int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ~~~~~~~~~~~~~ ReadMapper.cpp:240:16: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] g++ -o kissreads_graph block_allocator.o DeBruijnGraph.o Fragment.o json.o read_coherence_mapsembler/libchash.o read_coherence_mapsembler/couple.o read_coherence_mapsembler/misc_tools.o read_coherence_mapsembler/read_groups.o read_coherence_mapsembler/consensus_common.o read_coherence_mapsembler/list.o read_coherence_mapsembler/read_coherence.o read_coherence_mapsembler/interface_libchash.o commons.o ../minia/Kmer.o ../minia/Bank.o Loader.o ReadMapper.o KissReadsGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads_graph=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial make[2]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/kissreads_graph' cd kissreads && make k=29 make[2]: Entering directory '/build/mapsembler2-2.2.4+dfsg/kissreads' gcc -o src/coherent_algorithm.o -c src/coherent_algorithm.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/commons.o -c src/commons.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/couple.o -c src/couple.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/extension_algorithm.o -c src/extension_algorithm.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/fragment_index.o -c src/fragment_index.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/kissReads.o -c src/kissReads.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/list.o -c src/list.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/outputs.o -c src/outputs.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/interface_libchash.o -c src/interface_libchash.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/libchash.o -c src/libchash.c -O3 -lz -fopenmp -DOMP -g -O2 -ffile-prefix-map=/build/mapsembler2-2.2.4+dfsg/kissreads=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ src/libchash.c: In function 'HashFind': src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro 'READ_UL' READ_UL((ht)->fpData, cchData); \ ^~~~~~~ src/libchash.c:1221:4: note: in expansion of macro 'LOAD_AND_RETURN' LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); ^~~~~~~~~~~~~~~ src/libchash.c: In function 'HashFindLast': src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro 'READ_UL' READ_UL((ht)->fpData, cchData); \ ^~~~~~~ src/libchash.c:1226:4: note: in expansion of macro 'LOAD_AND_RETURN' LOAD_AND_RETURN(ht, ht->posLastFind); ^~~~~~~~~~~~~~~ src/libchash.c: In function 'HashFirstBucket': src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro 'READ_UL' READ_UL((ht)->fpData, cchData); \ ^~~~~~~ src/libchash.c:1290:3: note: in expansion of macro 'LOAD_AND_RETURN' LOAD_AND_RETURN(ht, retval); ^~~~~~~~~~~~~~~ src/libchash.c: In function 'HashNextBucket': src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro 'READ_UL' READ_UL((ht)->fpData, cchData); \ ^~~~~~~ src/libchash.c:1300:3: note: in expansion of macro 'LOAD_AND_RETURN' LOAD_AND_RETURN(ht, retval); ^~~~~~~~~~~~~~~ src/libchash.c: In function 'HashDoLoad': src/libchash.c:1407:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(szMagicKey, 1, 4, fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1416:4: note: in expansion of macro 'READ_UL' READ_UL(fp, ht->cchKey); ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1417:4: note: in expansion of macro 'READ_UL' READ_UL(fp, ht->cItems); ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1418:4: note: in expansion of macro 'READ_UL' READ_UL(fp, ht->cDeletedItems); ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1421:4: note: in expansion of macro 'READ_UL' READ_UL(fp, cchKey); ^~~~~~~ src/libchash.c:1423:4: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(rgchKeys, 1, cchKey, fp); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1428:7: note: in expansion of macro 'READ_UL' READ_UL(fp, bck->data); /* all we need if dataRead is NULL */ ^~~~~~~ src/libchash.c: In function 'SparseRead': src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:622:4: note: in expansion of macro 'READ_UL' READ_UL(fp, cBuckets); /* actually, cBuckets is stored */ ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread(&_ul, sizeof(_ul), 1, (fp)); \ ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:627:3: note: in expansion of macro 'READ_UL' READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); ^~~~~~~ gcc -o kissreads src/coherent_algorithm.o src/commons.o src/couple.o src/extension_algorithm.o src/fragment_index.o src/kissReads.o src/list.o src/outputs.o src/interface_libchash.o src/libchash.o -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/x86_64-linux-gnu/hdf5/serial -lm -O3 -lz -lgomp ################# # Compilation OK# ################# make[2]: Leaving directory '/build/mapsembler2-2.2.4+dfsg/kissreads' make[1]: Leaving directory '/build/mapsembler2-2.2.4+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep debian/rules override_dh_install make[1]: Entering directory '/build/mapsembler2-2.2.4+dfsg' mv ./kissreads/kissreads ./kissreads/mapsembler2_kissreads mv ./kissreads_graph/kissreads_graph ./kissreads_graph/mapsembler2_kissreads_graph cp run_mapsembler2_pipeline.sh run_mapsembler2_pipeline dh_install make[1]: Leaving directory '/build/mapsembler2-2.2.4+dfsg' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mapsembler2/usr/bin/mapsembler2_extremities was not linked against libhdf5_serial.so.103 (it uses none of the library's symbols) dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mapsembler2/usr/bin/mapsembler2_extremities was not linked against libdl.so.2 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'mapsembler2-dbgsym' in '../mapsembler2-dbgsym_2.2.4+dfsg-3_amd64.deb'. dpkg-deb: building package 'mapsembler2' in '../mapsembler2_2.2.4+dfsg-3_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../mapsembler2_2.2.4+dfsg-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/41264 and its subdirectories I: Current time: Fri Jan 15 10:54:04 -12 2021 I: pbuilder-time-stamp: 1610751244 Fri Jan 15 22:54:06 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Fri Jan 15 22:54:06 UTC 2021 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Fri Jan 15 22:58:54 UTC 2021 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Fri Jan 15 22:58:54 UTC 2021 I: mapsembler2_2.2.4+dfsg-3_amd64.changes: Format: 1.8 Date: Sat, 03 Nov 2018 07:15:54 +0100 Source: mapsembler2 Binary: mapsembler2 mapsembler2-dbgsym Architecture: amd64 Version: 2.2.4+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: mapsembler2 - bioinformatics targeted assembly software Closes: 912662 Changes: mapsembler2 (2.2.4+dfsg-3) unstable; urgency=medium . * Provide mapsembler2_extend as symlink to mapsembler_extend since it is used in pipeline script (Thanks for the hint to Horacio Montenegro ) Closes: #912662 * Remove trailing whitespace in debian/changelog * Remove trailing whitespace in debian/copyright Checksums-Sha1: 7abd80a664ced0738bd4f03c48719080d65febb3 2956260 mapsembler2-dbgsym_2.2.4+dfsg-3_amd64.deb 6feaa2385072060b4da4fa75e55ff39931c46d97 6330 mapsembler2_2.2.4+dfsg-3_amd64.buildinfo 0dd6dbf6ac310f49a08d89249fbe360ca069fe95 249016 mapsembler2_2.2.4+dfsg-3_amd64.deb Checksums-Sha256: f3c2f6d8dd28c90864a3e1b52ea0aa1c4432abbe896013cddd17c2e2f9003d34 2956260 mapsembler2-dbgsym_2.2.4+dfsg-3_amd64.deb 0c37f8e8881e41b8e319b32f7e831eccb4763ade05c6fdb9a9fffffa0cec9bd1 6330 mapsembler2_2.2.4+dfsg-3_amd64.buildinfo 95d4483476ab653db9c8c73e098eadd770779d25a043993771dfc859e0f1d62a 249016 mapsembler2_2.2.4+dfsg-3_amd64.deb Files: 6f96db8871f7fafc9659601c42890ce6 2956260 debug optional mapsembler2-dbgsym_2.2.4+dfsg-3_amd64.deb 9a97041bc1ec310074c804bcff02eb0b 6330 science optional mapsembler2_2.2.4+dfsg-3_amd64.buildinfo 480b49ca3c30acb526b69e73aa93d3e6 249016 science optional mapsembler2_2.2.4+dfsg-3_amd64.deb Fri Jan 15 22:59:01 UTC 2021 I: diffoscope 163 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.l0nxrPNotr/mapsembler2_2.2.4+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.l0nxrPNotr/mapsembler2_2.2.4+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.l0nxrPNotr/mapsembler2_2.2.4+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.l0nxrPNotr/b1/mapsembler2_2.2.4+dfsg-3_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.l0nxrPNotr/b2/mapsembler2_2.2.4+dfsg-3_amd64.changes ## close_archive (total time: 0.001s) 0.000s 18 calls diffoscope.comparators.xz.XzContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 173.784s) 90.882s 1017 calls readelf 73.155s 159 calls diff 6.835s 209 calls objdump 1.800s 2 calls objcopy 0.865s 18 calls xz 0.164s 22 calls strings 0.082s 9 calls cmp 0.001s 15 calls cmp (internal) ## compare_files (cumulative) (total time: 456.796s) 89.631s 1 call abc.DotChangesFile 89.405s 2 calls abc.DebFile 89.125s 4 calls abc.XzFile 88.235s 2 calls abc.DebDataTarFile 87.532s 2 calls abc.ElfFile 9.162s 10 calls diffoscope.comparators.elf.ElfCodeSection 2.692s 35 calls diffoscope.comparators.elf.ElfSection 0.585s 2 calls diffoscope.comparators.elf.ElfStringSection 0.334s 2 calls abc.TarFile 0.036s 1 call abc.TextFile 0.033s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection 0.027s 2 calls abc.Md5sumsFile ## container_extract (total time: 1.166s) 0.868s 18 calls diffoscope.comparators.xz.XzContainer 0.135s 22 calls diffoscope.comparators.deb.DebContainer 0.084s 36 calls diffoscope.comparators.deb.DebTarContainer 0.078s 16 calls diffoscope.comparators.tar.TarContainer ## has_same_content_as (total time: 0.088s) 0.031s 4 calls abc.XzFile 0.019s 2 calls abc.DebDataTarFile 0.017s 2 calls abc.DebFile 0.017s 2 calls abc.ElfFile 0.001s 4 calls abc.TextFile 0.001s 4 calls abc.Md5sumsFile 0.001s 35 calls diffoscope.comparators.elf.ElfSection 0.000s 3 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 2 calls abc.TarFile 0.000s 10 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 1 call abc.DotChangesFile 0.000s 2 calls diffoscope.comparators.elf.ElfStringSection 0.000s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 95.820s) 95.731s 2 calls outputs 0.089s 1 call cleanup ## open_archive (total time: 0.001s) 0.000s 18 calls diffoscope.comparators.xz.XzContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 4.360s) 1.997s 1 call html 1.581s 1 call text 0.782s 1 call json ## recognizes (total time: 2.032s) 0.545s 690 calls diffoscope.comparators.utils.archive.ArchiveMember 0.492s 700 calls diffoscope.comparators.elf.ElfSection 0.407s 1414 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.376s 10 calls diffoscope.comparators.binary.FilesystemFile 0.133s 200 calls diffoscope.comparators.elf.ElfCodeSection 0.043s 176 calls diffoscope.comparators.debian.DebControlMember 0.033s 40 calls diffoscope.comparators.elf.ElfStringSection 0.002s 20 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.001s 28 calls abc.Md5sumsFile 0.000s 8 calls abc.DotChangesFile 0.000s 12 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink Fri Jan 15 23:10:34 UTC 2021 E: mapsembler2 failed to build reproducibly in buster on amd64. Fri Jan 15 23:11:03 UTC 2021 I: Submitting .buildinfo files to external archives: Fri Jan 15 23:11:03 UTC 2021 I: Submitting 8.0K b1/mapsembler2_2.2.4+dfsg-3_amd64.buildinfo.asc Fri Jan 15 23:11:04 UTC 2021 I: Submitting 8.0K b2/mapsembler2_2.2.4+dfsg-3_amd64.buildinfo.asc Fri Jan 15 23:11:05 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jan 15 23:11:05 UTC 2021 I: Done submitting .buildinfo files. Fri Jan 15 23:11:05 UTC 2021 I: Removing signed mapsembler2_2.2.4+dfsg-3_amd64.buildinfo.asc files: removed './b1/mapsembler2_2.2.4+dfsg-3_amd64.buildinfo.asc' removed './b2/mapsembler2_2.2.4+dfsg-3_amd64.buildinfo.asc'