Sat Jun 19 15:23:13 UTC 2021 I: starting to build macs/buster/amd64 on jenkins on '2021-06-19 15:22' Sat Jun 19 15:23:13 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_27/19643/console.log Sat Jun 19 15:23:13 UTC 2021 I: Downloading source for buster/macs=2.1.2.1-1 --2021-06-19 15:23:13-- http://deb.debian.org/debian/pool/main/m/macs/macs_2.1.2.1-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2032 (2.0K) Saving to: ‘macs_2.1.2.1-1.dsc’ 0K . 100% 202M=0s 2021-06-19 15:23:13 (202 MB/s) - ‘macs_2.1.2.1-1.dsc’ saved [2032/2032] Sat Jun 19 15:23:14 UTC 2021 I: macs_2.1.2.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: macs Binary: macs Architecture: any Version: 2.1.2.1-1 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Andreas Tille Homepage: https://github.com/taoliu/MACS/ Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/macs Vcs-Git: https://salsa.debian.org/med-team/macs.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~), dh-python, python-all-dev, python-numpy, python-setuptools, help2man, cython Package-List: macs deb science optional arch=any Checksums-Sha1: 2cfc1e621482ce45b09eeb90e0dc872e4c15f6a8 1590175 macs_2.1.2.1.orig.tar.gz 103d5febea910e8b8dff0830a3356e7466796f32 1265300 macs_2.1.2.1-1.debian.tar.xz Checksums-Sha256: 6ee9381bda61bacf65e2e31bde267cbcd61a1304457f8a00a0eb7632dd12419b 1590175 macs_2.1.2.1.orig.tar.gz 9213f237207d33bd64255cc2c2a7b30bc418ec629579e5f28d3a865f1447f837 1265300 macs_2.1.2.1-1.debian.tar.xz Files: 0d466e887cb29fade7c1557409673a5f 1590175 macs_2.1.2.1.orig.tar.gz c58356b81795d672a6f91bbff7f99dc4 1265300 macs_2.1.2.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAlvN8gwACgkQPCZ2P2xn 5uJwqQ//Xkdkt9YXBSTUcBBjWHm5mwpuE5XkNrY4NoQIGcTqDCqmtGc3JuuNfypc 6zu5R6enZQgEUv76O/hlYb0ecwCNLeNNu4DkHJPUrUFOzzNkl3GhmW+E746ReYCi UV4zToTeHrUMjOMmEaqn10RodrMdNlRLtB1CbyzUnJqURVlhnL72Zzu31EFV70v5 IXlQ9ZCsLdJaUHMd+jovJNt57Ih0GvVFr3ts47BWyTwIKUMxRBt6Hg6y/OEa4bj1 lrM/Y3YdNfmt/J2UfRd85l1C7pLsQaCe+LdJSb6vLxyjdUTEnCQ4mlkEzS6OLpnG UU8G6SrBdDmmgy9tTdWjiZ1BHhIzeD+hbsVlWQgyVqBKqLwpNmYvD/1g6MtLZXyh BR1QpCzZ1rExZi8TZtHfkdjnYYQ2GnZmia2Di2znQgiS2N4AobGFBO3tddtucgDQ IMjS2DOZGFqb/D3ivmzUcz05ckPhAJwl/2EwewV681vJmHBE6y2DeoiC/iCCDKi5 Nmx/5h+C0KHTdqWd4qgim+duIVnlUllooCctmRvXEjznCJ/oQ1S7+n6JVCmT1Lb9 KXWpyvL/i6e96s207+1OKDaAHQfvS8xcLehxGnMQ3U7YfXOla2RunSPD9S9EcQps yXkb4cSsQsj32arBE9KkxbCTD+igBFwR6du2wg4CEN+quYl6dQM= =cnQ0 -----END PGP SIGNATURE----- Sat Jun 19 15:23:14 UTC 2021 I: Checking whether the package is not for us Sat Jun 19 15:23:14 UTC 2021 I: Starting 1st build on remote node ionos1-amd64.debian.net. Sat Jun 19 15:23:14 UTC 2021 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Sat Jun 19 15:27:21 UTC 2021 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Jun 19 03:23:15 -12 2021 I: pbuilder-time-stamp: 1624116195 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [macs_2.1.2.1-1.dsc] I: copying [./macs_2.1.2.1.orig.tar.gz] I: copying [./macs_2.1.2.1-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Oct 22 03:51:40 2018 -12 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./macs_2.1.2.1-1.dsc dpkg-source: info: extracting macs in macs-2.1.2.1 dpkg-source: info: unpacking macs_2.1.2.1.orig.tar.gz dpkg-source: info: unpacking macs_2.1.2.1-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/37754/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='c02ea3eeacf44b1cbb91787a6e5d28ab' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='37754' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.4lhoAZfR7W/pbuilderrc_jxpy --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.4lhoAZfR7W/b1 --logfile b1/build.log macs_2.1.2.1-1.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 4.19.0-16-amd64 #1 SMP Debian 4.19.181-1 (2021-03-19) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jun 6 20:23 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/37754/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), dh-python, python-all-dev, python-numpy, python-setuptools, help2man, cython dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python-all-dev; however: Package python-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python-numpy; however: Package python-numpy is not installed. pbuilder-satisfydepends-dummy depends on python-setuptools; however: Package python-setuptools is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on cython; however: Package cython is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} cython{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbsd0{a} libcroco3{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libicu63{a} liblapack3{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libpipeline1{a} libpython-all-dev{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python{a} python-all{a} python-all-dev{a} python-dev{a} python-minimal{a} python-numpy{a} python-pkg-resources{a} python-setuptools{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.7{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 79 newly installed, 0 to remove and 0 not upgraded. Need to get 70.2 MB of archives. After unpacking 208 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u1 [1369 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u6 [1539 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u1 [1912 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 python2.7 amd64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 python amd64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 cython amd64 0.29.2-2 [1365 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 dh-python all 3.20190308 [99.3 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 help2man amd64 1.47.8 [177 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 libexpat1-dev amd64 2.2.6-2+deb10u1 [153 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 libpython2.7 amd64 2.7.16-2+deb10u1 [1036 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 libpython2.7-dev amd64 2.7.16-2+deb10u1 [31.6 MB] Get: 69 http://deb.debian.org/debian buster/main amd64 libpython2-dev amd64 2.7.16-1 [20.9 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 libpython-dev amd64 2.7.16-1 [20.9 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 libpython-all-dev amd64 2.7.16-1 [1064 B] Get: 72 http://deb.debian.org/debian buster/main amd64 python-all amd64 2.7.16-1 [1044 B] Get: 73 http://deb.debian.org/debian buster/main amd64 python2.7-dev amd64 2.7.16-2+deb10u1 [294 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 python2-dev amd64 2.7.16-1 [1212 B] Get: 75 http://deb.debian.org/debian buster/main amd64 python-dev amd64 2.7.16-1 [1192 B] Get: 76 http://deb.debian.org/debian buster/main amd64 python-all-dev amd64 2.7.16-1 [1068 B] Get: 77 http://deb.debian.org/debian buster/main amd64 python-pkg-resources all 40.8.0-1 [182 kB] Get: 78 http://deb.debian.org/debian buster/main amd64 python-numpy amd64 1:1.16.2-1 [2101 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 python-setuptools all 40.8.0-1 [382 kB] Fetched 70.2 MB in 1s (73.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3+deb10u1_amd64.deb ... Unpacking groff-base (1.22.4-3+deb10u1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package libpython2.7-minimal:amd64. Preparing to unpack .../06-libpython2.7-minimal_2.7.16-2+deb10u1_amd64.deb ... Unpacking libpython2.7-minimal:amd64 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7-minimal. Preparing to unpack .../07-python2.7-minimal_2.7.16-2+deb10u1_amd64.deb ... Unpacking python2.7-minimal (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-minimal. Preparing to unpack .../08-python2-minimal_2.7.16-1_amd64.deb ... Unpacking python2-minimal (2.7.16-1) ... Selecting previously unselected package python-minimal. Preparing to unpack .../09-python-minimal_2.7.16-1_amd64.deb ... Unpacking python-minimal (2.7.16-1) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../10-libssl1.1_1.1.1d-0+deb10u6_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1d-0+deb10u6) ... Selecting previously unselected package mime-support. Preparing to unpack .../11-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../12-libexpat1_2.2.6-2+deb10u1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.6-2+deb10u1) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../14-libreadline7_7.0-5_amd64.deb ... Unpacking libreadline7:amd64 (7.0-5) ... Selecting previously unselected package libpython2.7-stdlib:amd64. Preparing to unpack .../15-libpython2.7-stdlib_2.7.16-2+deb10u1_amd64.deb ... Unpacking libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Selecting previously unselected package python2.7. Preparing to unpack .../16-python2.7_2.7.16-2+deb10u1_amd64.deb ... Unpacking python2.7 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2-stdlib:amd64. Preparing to unpack .../17-libpython2-stdlib_2.7.16-1_amd64.deb ... Unpacking libpython2-stdlib:amd64 (2.7.16-1) ... Selecting previously unselected package libpython-stdlib:amd64. Preparing to unpack .../18-libpython-stdlib_2.7.16-1_amd64.deb ... Unpacking libpython-stdlib:amd64 (2.7.16-1) ... Setting up libpython2.7-minimal:amd64 (2.7.16-2+deb10u1) ... Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20658 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_amd64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20691 files and directories currently installed.) Preparing to unpack .../python_2.7.16-1_amd64.deb ... Unpacking python (2.7.16-1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package libpython3.7-minimal:amd64. Preparing to unpack .../libpython3.7-minimal_3.7.3-2+deb10u3_amd64.deb ... Unpacking libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... Selecting previously unselected package python3.7-minimal. Preparing to unpack .../python3.7-minimal_3.7.3-2+deb10u3_amd64.deb ... Unpacking python3.7-minimal (3.7.3-2+deb10u3) ... Setting up libssl1.1:amd64 (1.1.1d-0+deb10u6) ... Setting up libpython3.7-minimal:amd64 (3.7.3-2+deb10u3) ... Setting up libexpat1:amd64 (2.2.6-2+deb10u1) ... Setting up python3.7-minimal (3.7.3-2+deb10u3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20960 files and directories currently installed.) Preparing to unpack .../python3-minimal_3.7.3-1_amd64.deb ... Unpacking python3-minimal (3.7.3-1) ... Selecting previously unselected package libmpdec2:amd64. Preparing to unpack .../libmpdec2_2.4.2-2_amd64.deb ... Unpacking libmpdec2:amd64 (2.4.2-2) ... Selecting previously unselected package libpython3.7-stdlib:amd64. Preparing to unpack .../libpython3.7-stdlib_3.7.3-2+deb10u3_amd64.deb ... Unpacking libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Selecting previously unselected package python3.7. Preparing to unpack .../python3.7_3.7.3-2+deb10u3_amd64.deb ... Unpacking python3.7 (3.7.3-2+deb10u3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../libpython3-stdlib_3.7.3-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.7.3-1) ... Setting up python3-minimal (3.7.3-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21372 files and directories currently installed.) Preparing to unpack .../00-python3_3.7.3-1_amd64.deb ... Unpacking python3 (3.7.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4+deb10u2) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking file (1:5.35-4+deb10u2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../06-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../07-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../08-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../09-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../10-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../11-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package cython. Preparing to unpack .../12-cython_0.29.2-2_amd64.deb ... Unpacking cython (0.29.2-2) ... Selecting previously unselected package libtool. Preparing to unpack .../13-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../14-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../15-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../16-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../17-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../18-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../19-dwz_0.12-3_amd64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../20-libglib2.0-0_2.58.3-2+deb10u3_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../21-libicu63_63.1-6+deb10u1_amd64.deb ... Unpacking libicu63:amd64 (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../22-libxml2_2.9.4+dfsg1-7+deb10u2_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../23-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../24-libncurses6_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../29-python3-lib2to3_3.7.3-1_all.deb ... Unpacking python3-lib2to3 (3.7.3-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../30-python3-distutils_3.7.3-1_all.deb ... Unpacking python3-distutils (3.7.3-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../31-dh-python_3.20190308_all.deb ... Unpacking dh-python (3.20190308) ... Selecting previously unselected package help2man. Preparing to unpack .../32-help2man_1.47.8_amd64.deb ... Unpacking help2man (1.47.8) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../33-libgfortran5_8.3.0-6_amd64.deb ... Unpacking libgfortran5:amd64 (8.3.0-6) ... Selecting previously unselected package libblas3:amd64. Preparing to unpack .../34-libblas3_3.8.0-2_amd64.deb ... Unpacking libblas3:amd64 (3.8.0-2) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../35-libexpat1-dev_2.2.6-2+deb10u1_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.2.6-2+deb10u1) ... Selecting previously unselected package liblapack3:amd64. Preparing to unpack .../36-liblapack3_3.8.0-2_amd64.deb ... Unpacking liblapack3:amd64 (3.8.0-2) ... Selecting previously unselected package libpython2.7:amd64. Preparing to unpack .../37-libpython2.7_2.7.16-2+deb10u1_amd64.deb ... Unpacking libpython2.7:amd64 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2.7-dev:amd64. Preparing to unpack .../38-libpython2.7-dev_2.7.16-2+deb10u1_amd64.deb ... Unpacking libpython2.7-dev:amd64 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2-dev:amd64. Preparing to unpack .../39-libpython2-dev_2.7.16-1_amd64.deb ... Unpacking libpython2-dev:amd64 (2.7.16-1) ... Selecting previously unselected package libpython-dev:amd64. Preparing to unpack .../40-libpython-dev_2.7.16-1_amd64.deb ... Unpacking libpython-dev:amd64 (2.7.16-1) ... Selecting previously unselected package libpython-all-dev:amd64. Preparing to unpack .../41-libpython-all-dev_2.7.16-1_amd64.deb ... Unpacking libpython-all-dev:amd64 (2.7.16-1) ... Selecting previously unselected package python-all. Preparing to unpack .../42-python-all_2.7.16-1_amd64.deb ... Unpacking python-all (2.7.16-1) ... Selecting previously unselected package python2.7-dev. Preparing to unpack .../43-python2.7-dev_2.7.16-2+deb10u1_amd64.deb ... Unpacking python2.7-dev (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-dev. Preparing to unpack .../44-python2-dev_2.7.16-1_amd64.deb ... Unpacking python2-dev (2.7.16-1) ... Selecting previously unselected package python-dev. Preparing to unpack .../45-python-dev_2.7.16-1_amd64.deb ... Unpacking python-dev (2.7.16-1) ... Selecting previously unselected package python-all-dev. Preparing to unpack .../46-python-all-dev_2.7.16-1_amd64.deb ... Unpacking python-all-dev (2.7.16-1) ... Selecting previously unselected package python-pkg-resources. Preparing to unpack .../47-python-pkg-resources_40.8.0-1_all.deb ... Unpacking python-pkg-resources (40.8.0-1) ... Selecting previously unselected package python-numpy. Preparing to unpack .../48-python-numpy_1%3a1.16.2-1_amd64.deb ... Unpacking python-numpy (1:1.16.2-1) ... Selecting previously unselected package python-setuptools. Preparing to unpack .../49-python-setuptools_40.8.0-1_all.deb ... Unpacking python-setuptools (40.8.0-1) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up mime-support (3.62) ... Setting up libmagic-mgc (1:5.35-4+deb10u2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... No schema files found: doing nothing. Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libexpat1-dev:amd64 (2.2.6-2+deb10u1) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Setting up help2man (1.47.8) ... Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up libpython2.7:amd64 (2.7.16-2+deb10u1) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libpython2.7-dev:amd64 (2.7.16-2+deb10u1) ... Setting up gettext (0.19.8.1-9) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up libpython2-dev:amd64 (2.7.16-1) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python (2.7.16-1) ... Setting up python2.7-dev (2.7.16-2+deb10u1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up cython (0.29.2-2) ... Setting up python2-dev (2.7.16-1) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up po-debconf (1.0.21) ... Setting up python-all (2.7.16-1) ... Setting up libpython-dev:amd64 (2.7.16-1) ... Setting up python-setuptools (40.8.0-1) ... Setting up python-dev (2.7.16-1) ... Setting up libpython-all-dev:amd64 (2.7.16-1) ... Setting up python-numpy (1:1.16.2-1) ... Setting up python-all-dev (2.7.16-1) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/macs-2.1.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package macs dpkg-buildpackage: info: source version 2.1.2.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python2 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/macs-2.1.2.1' dh_auto_clean I: pybuild base:217: python2.7 setup.py clean running clean removing '/build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it rm -f debian/*.1 debian/*-man-include make[1]: Leaving directory '/build/macs-2.1.2.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python2 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:217: python2.7 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/macs-2.1.2.1' for pyx in `find MACS2/ -name "*.pyx" | grep -v khash`; do \ rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done cp setup.py setup.py.orig cp setup_w_cython.py setup.py dh_auto_build I: pybuild base:217: /usr/bin/python setup.py build running build running build_py creating /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2 copying MACS2/bdgpeakcall_cmd.py -> /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2 copying MACS2/__init__.py -> /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2 copying MACS2/cmbreps_cmd.py -> /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2 copying MACS2/bdgcmp_cmd.py -> /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2 copying MACS2/callpeak_cmd.py -> /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2 copying MACS2/randsample_cmd.py -> /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2 copying MACS2/bdgdiff_cmd.py -> /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2 copying MACS2/Constants.py -> /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2 copying MACS2/OptValidator.py -> /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2 copying MACS2/filterdup_cmd.py -> /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2 copying MACS2/diffpeak_cmd.py -> /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2 copying MACS2/pileup_cmd.py -> /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2 copying MACS2/bdgopt_cmd.py -> /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2 copying MACS2/refinepeak_cmd.py -> /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2 copying MACS2/OutputWriter.py -> /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2 copying MACS2/predictd_cmd.py -> /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2 copying MACS2/bdgbroadcall_cmd.py -> /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2 creating /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO copying MACS2/IO/__init__.py -> /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO copying MACS2/IO/BinKeeper.py -> /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO creating /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/data copying MACS2/data/__init__.py -> /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/data running build_ext cythoning MACS2/Prob.pyx to MACS2/Prob.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/macs-2.1.2.1/MACS2/Prob.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.Prob' extension creating build creating build/temp.linux-amd64-2.7 creating build/temp.linux-amd64-2.7/MACS2 x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/Prob.c -o build/temp.linux-amd64-2.7/MACS2/Prob.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/MACS2/Prob.o -lm -o /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/Prob.so cythoning MACS2/IO/Parser.pyx to MACS2/IO/Parser.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/macs-2.1.2.1/MACS2/IO/Parser.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.IO.Parser' extension creating build/temp.linux-amd64-2.7/MACS2/IO x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/Parser.c -o build/temp.linux-amd64-2.7/MACS2/IO/Parser.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/MACS2/IO/Parser.o -o /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/Parser.so cythoning MACS2/Pileup.pyx to MACS2/Pileup.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/macs-2.1.2.1/MACS2/Pileup.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.Pileup' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/Pileup.c -o build/temp.linux-amd64-2.7/MACS2/Pileup.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/cPosValCalculation.c -o build/temp.linux-amd64-2.7/MACS2/cPosValCalculation.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/MACS2/Pileup.o build/temp.linux-amd64-2.7/MACS2/cPosValCalculation.o -o /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/Pileup.so cythoning MACS2/PeakModel.pyx to MACS2/PeakModel.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/macs-2.1.2.1/MACS2/PeakModel.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.PeakModel' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/PeakModel.c -o build/temp.linux-amd64-2.7/MACS2/PeakModel.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/MACS2/PeakModel.o -o /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/PeakModel.so cythoning MACS2/PeakDetect.pyx to MACS2/PeakDetect.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/macs-2.1.2.1/MACS2/PeakDetect.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.PeakDetect' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/PeakDetect.c -o build/temp.linux-amd64-2.7/MACS2/PeakDetect.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/MACS2/PeakDetect.o -o /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/PeakDetect.so cythoning MACS2/Signal.pyx to MACS2/Signal.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/macs-2.1.2.1/MACS2/Signal.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.Signal' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/Signal.c -o build/temp.linux-amd64-2.7/MACS2/Signal.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/MACS2/Signal.o -o /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/Signal.so cythoning MACS2/IO/PeakIO.pyx to MACS2/IO/PeakIO.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/macs-2.1.2.1/MACS2/IO/PeakIO.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.IO.PeakIO' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/IO/PeakIO.c -o build/temp.linux-amd64-2.7/MACS2/IO/PeakIO.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/MACS2/IO/PeakIO.o -o /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/PeakIO.so cythoning MACS2/IO/BedGraphIO.pyx to MACS2/IO/BedGraphIO.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/macs-2.1.2.1/MACS2/IO/BedGraphIO.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.IO.BedGraphIO' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/IO/BedGraphIO.c -o build/temp.linux-amd64-2.7/MACS2/IO/BedGraphIO.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/MACS2/IO/BedGraphIO.o -o /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/BedGraphIO.so cythoning MACS2/IO/FixWidthTrack.pyx to MACS2/IO/FixWidthTrack.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/macs-2.1.2.1/MACS2/IO/FixWidthTrack.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.IO.FixWidthTrack' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/FixWidthTrack.c -o build/temp.linux-amd64-2.7/MACS2/IO/FixWidthTrack.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/MACS2/IO/FixWidthTrack.o -o /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/FixWidthTrack.so cythoning MACS2/IO/PairedEndTrack.pyx to MACS2/IO/PairedEndTrack.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/macs-2.1.2.1/MACS2/IO/PairedEndTrack.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.IO.PairedEndTrack' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/PairedEndTrack.c -o build/temp.linux-amd64-2.7/MACS2/IO/PairedEndTrack.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/MACS2/IO/PairedEndTrack.o -o /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/PairedEndTrack.so cythoning MACS2/IO/BedGraph.pyx to MACS2/IO/BedGraph.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/macs-2.1.2.1/MACS2/IO/BedGraph.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.IO.BedGraph' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c MACS2/IO/BedGraph.c -o build/temp.linux-amd64-2.7/MACS2/IO/BedGraph.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/MACS2/IO/BedGraph.o -lm -o /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/BedGraph.so cythoning MACS2/IO/ScoreTrack.pyx to MACS2/IO/ScoreTrack.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/macs-2.1.2.1/MACS2/IO/ScoreTrack.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.IO.ScoreTrack' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/ScoreTrack.c -o build/temp.linux-amd64-2.7/MACS2/IO/ScoreTrack.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/MACS2/IO/ScoreTrack.o -o /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/ScoreTrack.so cythoning MACS2/IO/CallPeakUnit.pyx to MACS2/IO/CallPeakUnit.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/macs-2.1.2.1/MACS2/IO/CallPeakUnit.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'MACS2.IO.CallPeakUnit' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/IO/CallPeakUnit.c -o build/temp.linux-amd64-2.7/MACS2/IO/CallPeakUnit.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/MACS2/IO/CallPeakUnit.o -o /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/CallPeakUnit.so cythoning MACS2/hashtable.pyx to MACS2/hashtable.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/macs-2.1.2.1/MACS2/hashtable.pyx tree = Parsing.p_module(s, pxd, full_module_name) warning: MACS2/khash.pxd:67:21: Declarations should not be declared inline. warning: MACS2/khash.pxd:68:32: Declarations should not be declared inline. warning: MACS2/khash.pxd:69:30: Declarations should not be declared inline. warning: MACS2/khash.pxd:70:31: Declarations should not be declared inline. warning: MACS2/khash.pxd:71:31: Declarations should not be declared inline. warning: MACS2/khash.pxd:72:31: Declarations should not be declared inline. warning: MACS2/khash.pxd:73:28: Declarations should not be declared inline. warning: MACS2/khash.pxd:83:23: Declarations should not be declared inline. warning: MACS2/khash.pxd:84:34: Declarations should not be declared inline. warning: MACS2/khash.pxd:85:32: Declarations should not be declared inline. warning: MACS2/khash.pxd:86:33: Declarations should not be declared inline. warning: MACS2/khash.pxd:87:33: Declarations should not be declared inline. warning: MACS2/khash.pxd:88:33: Declarations should not be declared inline. warning: MACS2/khash.pxd:89:30: Declarations should not be declared inline. building 'MACS2.hashtable' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS2/ -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/hashtable.c -o build/temp.linux-amd64-2.7/MACS2/hashtable.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/MACS2/hashtable.o -o /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/hashtable.so cythoning MACS2/Statistics.pyx to MACS2/Statistics.c /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/macs-2.1.2.1/MACS2/Statistics.pyx tree = Parsing.p_module(s, pxd, full_module_name) warning: MACS2/khash.pxd:67:21: Declarations should not be declared inline. warning: MACS2/khash.pxd:68:32: Declarations should not be declared inline. warning: MACS2/khash.pxd:69:30: Declarations should not be declared inline. warning: MACS2/khash.pxd:70:31: Declarations should not be declared inline. warning: MACS2/khash.pxd:71:31: Declarations should not be declared inline. warning: MACS2/khash.pxd:72:31: Declarations should not be declared inline. warning: MACS2/khash.pxd:73:28: Declarations should not be declared inline. warning: MACS2/khash.pxd:83:23: Declarations should not be declared inline. warning: MACS2/khash.pxd:84:34: Declarations should not be declared inline. warning: MACS2/khash.pxd:85:32: Declarations should not be declared inline. warning: MACS2/khash.pxd:86:33: Declarations should not be declared inline. warning: MACS2/khash.pxd:87:33: Declarations should not be declared inline. warning: MACS2/khash.pxd:88:33: Declarations should not be declared inline. warning: MACS2/khash.pxd:89:30: Declarations should not be declared inline. building 'MACS2.Statistics' extension x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -IMACS2/ -I/usr/lib/python2.7/dist-packages/numpy/core/include -I/usr/include/python2.7 -c MACS2/Statistics.c -o build/temp.linux-amd64-2.7/MACS2/Statistics.o -w -O3 -ffast-math x86_64-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/macs-2.1.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/MACS2/Statistics.o -lm -o /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/Statistics.so running build_scripts creating build/scripts-2.7 copying and adjusting bin/macs2 -> build/scripts-2.7 changing mode of build/scripts-2.7/macs2 from 644 to 755 PYTHONPATH=./.pybuild/pythonX.Y_2.7/build/ help2man \ --no-discard-stderr --no-info \ --name "macs2 \- Model\-based Analysis for ChIP\-Sequencing" "python bin/macs2" > debian/macs2.1 for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \ "[NAME]\nmacs2_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \ > debian/macs2_${subcommand}-man-include; done for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \ PYTHONPATH=./.pybuild/pythonX.Y_2.7/build/ help2man \ --no-discard-stderr --no-info --version-string="2.1.2.1" \ --include debian/macs2_${subcommand}-man-include \ "python bin/macs2 ${subcommand}" > \ debian/macs2_${subcommand}.1; done make[1]: Leaving directory '/build/macs-2.1.2.1' dh_auto_test -O--buildsystem=pybuild I: pybuild base:217: cd /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build; python2.7 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python2 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:217: /usr/bin/python setup.py install --root /build/macs-2.1.2.1/debian/macs running install running build running build_py running build_ext skipping 'MACS2/Prob.c' Cython extension (up-to-date) skipping 'MACS2/IO/Parser.c' Cython extension (up-to-date) skipping 'MACS2/Pileup.c' Cython extension (up-to-date) skipping 'MACS2/PeakModel.c' Cython extension (up-to-date) skipping 'MACS2/PeakDetect.c' Cython extension (up-to-date) skipping 'MACS2/Signal.c' Cython extension (up-to-date) skipping 'MACS2/IO/PeakIO.c' Cython extension (up-to-date) skipping 'MACS2/IO/BedGraphIO.c' Cython extension (up-to-date) skipping 'MACS2/IO/FixWidthTrack.c' Cython extension (up-to-date) skipping 'MACS2/IO/PairedEndTrack.c' Cython extension (up-to-date) skipping 'MACS2/IO/BedGraph.c' Cython extension (up-to-date) skipping 'MACS2/IO/ScoreTrack.c' Cython extension (up-to-date) skipping 'MACS2/IO/CallPeakUnit.c' Cython extension (up-to-date) skipping 'MACS2/hashtable.c' Cython extension (up-to-date) skipping 'MACS2/Statistics.c' Cython extension (up-to-date) running build_scripts running install_lib creating /build/macs-2.1.2.1/debian/macs/usr creating /build/macs-2.1.2.1/debian/macs/usr/lib creating /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7 creating /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages creating /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2 copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/Statistics.so -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2 copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/hashtable.so -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2 copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/Signal.so -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2 copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/PeakDetect.so -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2 copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/PeakModel.so -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2 copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/Pileup.so -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2 copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/Prob.so -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2 creating /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/data copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/data/__init__.py -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/data creating /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/CallPeakUnit.so -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/ScoreTrack.so -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/BedGraph.so -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/PairedEndTrack.so -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/FixWidthTrack.so -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/BedGraphIO.so -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/PeakIO.so -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/Parser.so -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/BinKeeper.py -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/IO/__init__.py -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/bdgbroadcall_cmd.py -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2 copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/predictd_cmd.py -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2 copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/OutputWriter.py -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2 copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/refinepeak_cmd.py -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2 copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/bdgopt_cmd.py -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2 copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/pileup_cmd.py -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2 copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/diffpeak_cmd.py -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2 copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/filterdup_cmd.py -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2 copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/OptValidator.py -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2 copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/Constants.py -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2 copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/bdgdiff_cmd.py -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2 copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/randsample_cmd.py -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2 copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/callpeak_cmd.py -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2 copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/bdgcmp_cmd.py -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2 copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/cmbreps_cmd.py -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2 copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/__init__.py -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2 copying /build/macs-2.1.2.1/.pybuild/cpython2_2.7_MACS2/build/MACS2/bdgpeakcall_cmd.py -> /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2 byte-compiling /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/data/__init__.py to __init__.pyc byte-compiling /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO/BinKeeper.py to BinKeeper.pyc byte-compiling /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO/__init__.py to __init__.pyc byte-compiling /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgbroadcall_cmd.py to bdgbroadcall_cmd.pyc byte-compiling /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/predictd_cmd.py to predictd_cmd.pyc byte-compiling /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/OutputWriter.py to OutputWriter.pyc byte-compiling /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/refinepeak_cmd.py to refinepeak_cmd.pyc byte-compiling /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgopt_cmd.py to bdgopt_cmd.pyc byte-compiling /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/pileup_cmd.py to pileup_cmd.pyc byte-compiling /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/diffpeak_cmd.py to diffpeak_cmd.pyc byte-compiling /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/filterdup_cmd.py to filterdup_cmd.pyc byte-compiling /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/OptValidator.py to OptValidator.pyc byte-compiling /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/Constants.py to Constants.pyc byte-compiling /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgdiff_cmd.py to bdgdiff_cmd.pyc byte-compiling /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/randsample_cmd.py to randsample_cmd.pyc byte-compiling /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/callpeak_cmd.py to callpeak_cmd.pyc byte-compiling /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgcmp_cmd.py to bdgcmp_cmd.pyc byte-compiling /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/cmbreps_cmd.py to cmbreps_cmd.pyc byte-compiling /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/__init__.py to __init__.pyc byte-compiling /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2/bdgpeakcall_cmd.py to bdgpeakcall_cmd.pyc running install_egg_info running egg_info writing requirements to MACS2.egg-info/requires.txt writing MACS2.egg-info/PKG-INFO writing top-level names to MACS2.egg-info/top_level.txt writing dependency_links to MACS2.egg-info/dependency_links.txt reading manifest file 'MACS2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'MANIFEST' no previously-included directories found matching 'test' writing manifest file 'MACS2.egg-info/SOURCES.txt' Copying MACS2.egg-info to /build/macs-2.1.2.1/debian/macs/usr/lib/python2.7/dist-packages/MACS2-2.1.2.egg-info Skipping SOURCES.txt running install_scripts creating /build/macs-2.1.2.1/debian/macs/usr/bin copying build/scripts-2.7/macs2 -> /build/macs-2.1.2.1/debian/macs/usr/bin changing mode of /build/macs-2.1.2.1/debian/macs/usr/bin/macs2 to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python2 -O--buildsystem=pybuild I: dh_python2 tools:114: replacing shebang in debian/macs/usr/bin/macs2 I: dh_python2 fs:343: renaming PeakDetect.so to PeakDetect.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming PeakModel.so to PeakModel.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming Pileup.so to Pileup.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming Prob.so to Prob.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming Signal.so to Signal.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming Statistics.so to Statistics.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming hashtable.so to hashtable.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming BedGraph.so to BedGraph.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming BedGraphIO.so to BedGraphIO.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming CallPeakUnit.so to CallPeakUnit.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming FixWidthTrack.so to FixWidthTrack.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming PairedEndTrack.so to PairedEndTrack.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming Parser.so to Parser.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming PeakIO.so to PeakIO.x86_64-linux-gnu.so I: dh_python2 fs:343: renaming ScoreTrack.so to ScoreTrack.x86_64-linux-gnu.so dh_installinit -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_strip -O--buildsystem=pybuild dh_makeshlibs -O--buildsystem=pybuild dh_shlibdeps -O--buildsystem=pybuild dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/macs/usr/lib/python2.7/dist-packages/MACS2/PeakModel.x86_64-linux-gnu.so debian/macs/usr/lib/python2.7/dist-packages/MACS2/hashtable.x86_64-linux-gnu.so debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO/FixWidthTrack.x86_64-linux-gnu.so debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO/BedGraphIO.x86_64-linux-gnu.so debian/macs/usr/lib/python2.7/dist-packages/MACS2/Statistics.x86_64-linux-gnu.so debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO/ScoreTrack.x86_64-linux-gnu.so debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO/PairedEndTrack.x86_64-linux-gnu.so debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO/PeakIO.x86_64-linux-gnu.so debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO/Parser.x86_64-linux-gnu.so debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO/CallPeakUnit.x86_64-linux-gnu.so debian/macs/usr/lib/python2.7/dist-packages/MACS2/PeakDetect.x86_64-linux-gnu.so debian/macs/usr/lib/python2.7/dist-packages/MACS2/Signal.x86_64-linux-gnu.so debian/macs/usr/lib/python2.7/dist-packages/MACS2/IO/BedGraph.x86_64-linux-gnu.so debian/macs/usr/lib/python2.7/dist-packages/MACS2/Prob.x86_64-linux-gnu.so debian/macs/usr/lib/python2.7/dist-packages/MACS2/Pileup.x86_64-linux-gnu.so were not linked against libpthread.so.0 (they use none of the library's symbols) dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package macs: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package macs: substitution variable ${python:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'macs-dbgsym' in '../macs-dbgsym_2.1.2.1-1_amd64.deb'. dpkg-deb: building package 'macs' in '../macs_2.1.2.1-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../macs_2.1.2.1-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/37754 and its subdirectories I: Current time: Sat Jun 19 03:27:21 -12 2021 I: pbuilder-time-stamp: 1624116441 Sat Jun 19 15:27:21 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Sat Jun 19 15:27:21 UTC 2021 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Sat Jun 19 15:37:56 UTC 2021 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Sat Jun 19 15:37:56 UTC 2021 I: macs_2.1.2.1-1_amd64.changes: Format: 1.8 Date: Mon, 22 Oct 2018 08:51:13 -0700 Source: macs Binary: macs macs-dbgsym Architecture: amd64 Version: 2.1.2.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: macs - Model-based Analysis of ChIP-Seq on short reads sequencers Changes: macs (2.1.2.1-1) unstable; urgency=medium . [ Jelmer Vernooij ] * Use secure URI in Homepage field. . [ Michael R. Crusoe ] * New upstream release * Drop spelling patch (incorporated upstream) Checksums-Sha1: 7a42c20f547695f6b233d2f0d79ba3e94b524d91 4315000 macs-dbgsym_2.1.2.1-1_amd64.deb 7367dcae9a2151c13672cae1ff0ec725705d4cd3 6121 macs_2.1.2.1-1_amd64.buildinfo fddb24f50b00d77a60b72fced9b771ff73458413 2414228 macs_2.1.2.1-1_amd64.deb Checksums-Sha256: 9f1a4a761b3b68378cdce4507c68be94c11d5dd7f20a3f9869482f2224d1f62f 4315000 macs-dbgsym_2.1.2.1-1_amd64.deb 8adc5a613b2e60b043821bf74611c594062728cf583e8d6b8b596453ab10fd09 6121 macs_2.1.2.1-1_amd64.buildinfo 1a625d90ca758025c5185af7201a5bf2837763f1571f6f8e37a5727e9722d227 2414228 macs_2.1.2.1-1_amd64.deb Files: 7547e505477ddbf7b782cde2028109f8 4315000 debug optional macs-dbgsym_2.1.2.1-1_amd64.deb 22ef549b82d3e130c1d62c48f2546aac 6121 science optional macs_2.1.2.1-1_amd64.buildinfo 3ad9feceaf62593d5f2b0b7885b91077 2414228 science optional macs_2.1.2.1-1_amd64.deb Sat Jun 19 15:37:57 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.4lhoAZfR7W/macs_2.1.2.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.4lhoAZfR7W/macs_2.1.2.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.4lhoAZfR7W/macs_2.1.2.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.4lhoAZfR7W/b1/macs_2.1.2.1-1_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.4lhoAZfR7W/b2/macs_2.1.2.1-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.276s) 0.276s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.078s) 0.078s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sat Jun 19 15:38:01 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Sat Jun 19 15:38:01 UTC 2021 I: macs from buster built successfully and reproducibly on amd64. Sat Jun 19 15:38:03 UTC 2021 I: Submitting .buildinfo files to external archives: Sat Jun 19 15:38:03 UTC 2021 I: Submitting 8.0K b1/macs_2.1.2.1-1_amd64.buildinfo.asc Sat Jun 19 15:38:04 UTC 2021 I: Submitting 8.0K b2/macs_2.1.2.1-1_amd64.buildinfo.asc Sat Jun 19 15:38:05 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Jun 19 15:38:05 UTC 2021 I: Done submitting .buildinfo files. Sat Jun 19 15:38:05 UTC 2021 I: Removing signed macs_2.1.2.1-1_amd64.buildinfo.asc files: removed './b1/macs_2.1.2.1-1_amd64.buildinfo.asc' removed './b2/macs_2.1.2.1-1_amd64.buildinfo.asc'