Sun Dec 5 22:46:38 UTC 2021 I: starting to build libhmsbeagle/buster/amd64 on jenkins on '2021-12-05 22:46' Sun Dec 5 22:46:38 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_6/46534/console.log Sun Dec 5 22:46:38 UTC 2021 I: Downloading source for buster/libhmsbeagle=3.1.2+dfsg-6 --2021-12-05 22:46:38-- http://deb.debian.org/debian/pool/main/libh/libhmsbeagle/libhmsbeagle_3.1.2%2bdfsg-6.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2403 (2.3K) Saving to: ‘libhmsbeagle_3.1.2+dfsg-6.dsc’ 0K .. 100% 24.1M=0s 2021-12-05 22:46:38 (24.1 MB/s) - ‘libhmsbeagle_3.1.2+dfsg-6.dsc’ saved [2403/2403] Sun Dec 5 22:46:38 UTC 2021 I: libhmsbeagle_3.1.2+dfsg-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: libhmsbeagle Binary: libhmsbeagle-dev, libhmsbeagle1v5, libhmsbeagle-java Architecture: linux-any Version: 3.1.2+dfsg-6 Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille Homepage: https://github.com/beagle-dev/beagle-lib Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/libhmsbeagle Vcs-Git: https://salsa.debian.org/med-team/libhmsbeagle.git Build-Depends: debhelper (>= 12~), doxygen, graphviz, javahelper, default-jdk (>= 1:1.6), ant, dh-linktree, dh-exec, libjs-jquery, ocl-icd-opencl-dev | opencl-dev, pocl-opencl-icd [amd64] | opencl-icd [amd64], clinfo Package-List: libhmsbeagle-dev deb libdevel optional arch=linux-any libhmsbeagle-java deb java optional arch=linux-any libhmsbeagle1v5 deb libs optional arch=amd64,i386,arm64,armhf Checksums-Sha1: 63eca2aa65fdcee28828055ec689ae4addb7d87f 1156076 libhmsbeagle_3.1.2+dfsg.orig.tar.xz 417ad2f262d72ea2440467ed1e5648c62f931d83 36144 libhmsbeagle_3.1.2+dfsg-6.debian.tar.xz Checksums-Sha256: 9e147c68c5d93a6b3a239640733f3e0ae1a22c09ceb9f3a83d5a57a558bab78d 1156076 libhmsbeagle_3.1.2+dfsg.orig.tar.xz 90fca93d40fa5f8b06bab827ff1a5fd6879a809c01fb73beb7af17993e8364b2 36144 libhmsbeagle_3.1.2+dfsg-6.debian.tar.xz Files: 74d0cee13c394a3673f1932566adbbac 1156076 libhmsbeagle_3.1.2+dfsg.orig.tar.xz 1e1e11d1d75be898efdf1eecc6871f8a 36144 libhmsbeagle_3.1.2+dfsg-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlzq+CwOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtHIVhAAinbDPHGQDQdTgcPhuNREDCD2f8jZLjtS0J1F U7N3bCo1FC7M3GFvH9zN3lv5ClSkoouwTdMLk7NlCr7fRIISb9Sy9PWrLix3YR9X 88spxAHvbce+TE/UPjjgMdPn1Ea+xCPCFLRgch/WiPkULki/zMcUmwl26bwScBII kYInEfFU2/KiWORk/Qco0wMNXZHkVsHUh250dq6TN8YH2vSuVzxACT7yTPTVTRMH d73yxqiXOHHRWKEAGc47WpslyJY+quZZ9GhlMVyrii1T9DB1fmfPhk9L3r6aZ7Dl OKbO6xDJ/7y1e4zuO5L8F5sxujCz51S0oRXYv/rYfQW9gSzo8LM+V5OXxR9doKRu GsMQ+efl40L5azda+F/k6BBR1eFnfT1y9Mpjbxy2hTaoJcjcN9l8K8F5Nrqs0cO0 9kuIEsVYFugLsxTMbnYl/JIZx6qu5QQLUm7ITeq27JC9mq6en1y1WQGvOKOvC2gm dNmitP17WNwq8Hmxh+wIy/NUteMP/ji2NB8oQcH6OEs44j43JFYNx3PD8bVz9qyJ ebP1XF+SRQDLTtEN6yji5zU+/prerhVVHEJV+bT51r7vks3VZOnuZZkswI6IFOW+ e7v9PjixdGMAtg9vklnMj7mU0PsC08JQsoVRFudyz4Wt2GTJHtiJDWXPMESKxyS4 sa9mxIA= =A3ZS -----END PGP SIGNATURE----- Sun Dec 5 22:46:38 UTC 2021 I: Checking whether the package is not for us Sun Dec 5 22:46:38 UTC 2021 I: Starting 1st build on remote node ionos5-amd64.debian.net. Sun Dec 5 22:46:38 UTC 2021 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Sun Dec 5 22:51:21 UTC 2021 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Jan 7 17:09:45 -12 2023 I: pbuilder-time-stamp: 1673154585 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libhmsbeagle_3.1.2+dfsg-6.dsc] I: copying [./libhmsbeagle_3.1.2+dfsg.orig.tar.xz] I: copying [./libhmsbeagle_3.1.2+dfsg-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun May 26 08:33:48 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libhmsbeagle_3.1.2+dfsg-6.dsc dpkg-source: info: extracting libhmsbeagle in libhmsbeagle-3.1.2+dfsg dpkg-source: info: unpacking libhmsbeagle_3.1.2+dfsg.orig.tar.xz dpkg-source: info: unpacking libhmsbeagle_3.1.2+dfsg-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_static.patch dpkg-source: info: applying gcc-4.7.patch dpkg-source: info: applying doxygen_update.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4176637/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f30d23c64cad460cb77bb95fd146e6b2' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4176637' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.LfKs0yIA0S/pbuilderrc_bZkO --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.LfKs0yIA0S/b1 --logfile b1/build.log libhmsbeagle_3.1.2+dfsg-6.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Dec 10 16:21 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/4176637/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), doxygen, graphviz, javahelper, default-jdk (>= 1:1.6), ant, dh-linktree, dh-exec, libjs-jquery, ocl-icd-opencl-dev | opencl-dev, pocl-opencl-icd | opencl-icd, clinfo dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on graphviz; however: Package graphviz is not installed. pbuilder-satisfydepends-dummy depends on javahelper; however: Package javahelper is not installed. pbuilder-satisfydepends-dummy depends on default-jdk (>= 1:1.6); however: Package default-jdk is not installed. pbuilder-satisfydepends-dummy depends on ant; however: Package ant is not installed. pbuilder-satisfydepends-dummy depends on dh-linktree; however: Package dh-linktree is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on libjs-jquery; however: Package libjs-jquery is not installed. pbuilder-satisfydepends-dummy depends on ocl-icd-opencl-dev | opencl-dev; however: Package ocl-icd-opencl-dev is not installed. Package opencl-dev is not installed. pbuilder-satisfydepends-dummy depends on pocl-opencl-icd | opencl-icd; however: Package pocl-opencl-icd is not installed. Package opencl-icd is not installed. pbuilder-satisfydepends-dummy depends on clinfo; however: Package clinfo is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: ant{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} ca-certificates-java{a} clang-6.0{a} clinfo{a} dctrl-tools{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-exec{a} dh-linktree{a} dh-strip-nondeterminism{a} dirmngr{a} doxygen{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gnupg-utils{a} gpg{a} gpg-agent{a} gpg-wks-client{a} gpg-wks-server{a} gpgconf{a} gpgsm{a} graphviz{a} groff-base{a} intltool-debian{a} java-common{a} javahelper{a} lib32gcc1{a} lib32stdc++6{a} libarchive-zip-perl{a} libasound2{a} libasound2-data{a} libassuan0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libb-hooks-op-check-perl{a} libbsd0{a} libc6-i386{a} libcairo2{a} libcdt5{a} libcgraph6{a} libclang-common-6.0-dev{a} libclang1-6.0{a} libclass-method-modifiers-perl{a} libcroco3{a} libcups2{a} libdatrie1{a} libdbus-1-3{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libelf1{a} libencode-locale-perl{a} libexpat1{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgc1c2{a} libgd3{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgts-0.7-5{a} libgvc6{a} libgvpr2{a} libharfbuzz0b{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libhwloc5{a} libice6{a} libicu63{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjsoncpp1{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libksba8{a} liblab-gamut1{a} liblcms2-2{a} libldap-2.4-2{a} libldap-common{a} libllvm6.0{a} libllvm7{a} libltdl7{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libmodule-runtime-perl{a} libmoo-perl{a} libmpdec2{a} libncurses6{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnpth0{a} libnspr4{a} libnss3{a} libnuma1{a} libobjc-8-dev{a} libobjc4{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libparams-classify-perl{a} libpathplan4{a} libpciaccess0{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpocl2{a} libpocl2-common{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} librole-tiny-perl{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsigsegv2{a} libsm6{a} libssl1.1{a} libstrictures-perl{a} libsub-exporter-progressive-perl{a} libsub-quote-perl{a} libthai-data{a} libthai0{a} libtiff5{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwebp6{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb1{a} libxdamage1{a} libxdmcp6{a} libxdot4{a} libxext6{a} libxfixes3{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxshmfence1{a} libxt6{a} libxtst6{a} libxxf86vm1{a} lsb-base{a} m4{a} man-db{a} mime-support{a} netbase{a} ocl-icd-libopencl1{a} ocl-icd-opencl-dev{a} opencl-c-headers{a} openjdk-11-jdk{a} openjdk-11-jdk-headless{a} openjdk-11-jre{a} openjdk-11-jre-headless{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} pocl-opencl-icd{a} python3{a} python3-minimal{a} python3.7{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} ucf{a} wdiff{a} x11-common{a} The following packages are RECOMMENDED but will NOT be installed: ant-optional at curl dbus debian-keyring dput dput-ng dupload equivs fonts-dejavu-extra fonts-liberation javascript-common krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libclass-xsaccessor-perl libdata-dump-perl libdistro-info-perl libgit-wrapper-perl libgitlab-api-v4-perl libgl1-mesa-dev libglib2.0-data libgpm2 libgts-bin libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libhwloc-plugins liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libomp-dev libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libsub-name-perl libxt-dev licensecheck lintian llvm-6.0-dev lynx python python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg shared-mime-info strace unzip wget xdg-user-dirs 0 packages upgraded, 241 newly installed, 0 to remove and 0 not upgraded. Need to get 396 MB of archives. After unpacking 1083 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u7 [1539 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 netbase all 5.6 [19.4 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1d-0+deb10u7 [845 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libnspr4 amd64 2:4.20-1 [112 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 libnss3 amd64 2:3.42.1-1+deb10u3 [1159 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 ca-certificates-java all 20190405 [15.7 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 java-common all 0.71 [14.4 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 libavahi-common-data amd64 0.7-4+deb10u1 [122 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 libavahi-common3 amd64 0.7-4+deb10u1 [54.4 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libdbus-1-3 amd64 1.12.20-0+deb10u1 [215 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 libavahi-client3 amd64 0.7-4+deb10u1 [58.2 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u3 [65.8 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u3 [122 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u3 [370 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u3 [158 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 libcups2 amd64 2.2.10-6+deb10u4 [324 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 liblcms2-2 amd64 2.9-3 [145 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u2 [380 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libasound2-data all 1.1.8-1 [59.6 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 libasound2 amd64 1.1.8-1 [361 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 libpcsclite1 amd64 1.8.24-1 [58.5 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 openjdk-11-jre-headless amd64 11.0.12+7-2~deb10u1 [37.2 MB] Get: 57 http://deb.debian.org/debian buster/main amd64 default-jre-headless amd64 2:1.11-71 [10.9 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 ant all 1.10.5-2 [2082 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 libllvm6.0 amd64 1:6.0.1-10 [14.7 MB] Get: 68 http://deb.debian.org/debian buster/main amd64 libgc1c2 amd64 1:7.6.4-0.4 [224 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 libobjc4 amd64 8.3.0-6 [50.3 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 libobjc-8-dev amd64 8.3.0-6 [226 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 libc6-i386 amd64 2.28-10 [2872 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 lib32gcc1 amd64 1:8.3.0-6 [47.9 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 lib32stdc++6 amd64 8.3.0-6 [407 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 libclang-common-6.0-dev amd64 1:6.0.1-10 [3024 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 libclang1-6.0 amd64 1:6.0.1-10 [6951 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 clang-6.0 amd64 1:6.0.1-10 [9150 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 ocl-icd-libopencl1 amd64 2.2.12-2 [37.5 kB] Get: 78 http://deb.debian.org/debian buster/main amd64 clinfo amd64 2.2.18.04.06-1 [41.0 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 dctrl-tools amd64 2.24-3 [103 kB] Get: 80 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 81 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 82 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 83 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 84 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 85 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 86 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 87 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 88 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 89 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 90 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 91 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 92 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 93 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 94 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 95 http://deb.debian.org/debian buster/main amd64 libglvnd0 amd64 1.1.0-1 [48.6 kB] Get: 96 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get: 97 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 98 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get: 99 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get: 100 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get: 101 http://deb.debian.org/debian buster/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get: 102 http://deb.debian.org/debian buster/main amd64 libdrm-common all 2.4.97-1 [13.8 kB] Get: 103 http://deb.debian.org/debian buster/main amd64 libdrm2 amd64 2.4.97-1 [39.7 kB] Get: 104 http://deb.debian.org/debian buster/main amd64 libglapi-mesa amd64 18.3.6-2+deb10u1 [66.3 kB] Get: 105 http://deb.debian.org/debian buster/main amd64 libx11-xcb1 amd64 2:1.6.7-1+deb10u2 [191 kB] Get: 106 http://deb.debian.org/debian buster/main amd64 libxcb-dri2-0 amd64 1.13.1-2 [101 kB] Get: 107 http://deb.debian.org/debian buster/main amd64 libxcb-dri3-0 amd64 1.13.1-2 [100 kB] Get: 108 http://deb.debian.org/debian buster/main amd64 libxcb-glx0 amd64 1.13.1-2 [116 kB] Get: 109 http://deb.debian.org/debian buster/main amd64 libxcb-present0 amd64 1.13.1-2 [99.1 kB] Get: 110 http://deb.debian.org/debian buster/main amd64 libxcb-sync1 amd64 1.13.1-2 [103 kB] Get: 111 http://deb.debian.org/debian buster/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get: 112 http://deb.debian.org/debian buster/main amd64 libxdamage1 amd64 1:1.1.4-3+b3 [14.9 kB] Get: 113 http://deb.debian.org/debian buster/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get: 114 http://deb.debian.org/debian buster/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get: 115 http://deb.debian.org/debian buster/main amd64 libdrm-amdgpu1 amd64 2.4.97-1 [27.3 kB] Get: 116 http://deb.debian.org/debian buster/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get: 117 http://deb.debian.org/debian buster/main amd64 libdrm-intel1 amd64 2.4.97-1 [69.8 kB] Get: 118 http://deb.debian.org/debian buster/main amd64 libdrm-nouveau2 amd64 2.4.97-1 [26.3 kB] Get: 119 http://deb.debian.org/debian buster/main amd64 libdrm-radeon1 amd64 2.4.97-1 [31.1 kB] Get: 120 http://deb.debian.org/debian buster/main amd64 libllvm7 amd64 1:7.0.1-8+deb10u2 [13.1 MB] Get: 121 http://deb.debian.org/debian buster/main amd64 libsensors-config all 1:3.5.0-3 [31.6 kB] Get: 122 http://deb.debian.org/debian buster/main amd64 libsensors5 amd64 1:3.5.0-3 [52.6 kB] Get: 123 http://deb.debian.org/debian buster/main amd64 libgl1-mesa-dri amd64 18.3.6-2+deb10u1 [6685 kB] Get: 124 http://deb.debian.org/debian buster/main amd64 libglx-mesa0 amd64 18.3.6-2+deb10u1 [180 kB] Get: 125 http://deb.debian.org/debian buster/main amd64 libglx0 amd64 1.1.0-1 [30.0 kB] Get: 126 http://deb.debian.org/debian buster/main amd64 libgl1 amd64 1.1.0-1 [91.1 kB] Get: 127 http://deb.debian.org/debian buster/main amd64 libgif7 amd64 5.1.4-3 [43.3 kB] Get: 128 http://deb.debian.org/debian buster/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get: 129 http://deb.debian.org/debian buster/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get: 130 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get: 131 http://deb.debian.org/debian buster/main amd64 x11-common all 1:7.7+19 [251 kB] Get: 132 http://deb.debian.org/debian buster/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get: 133 http://deb.debian.org/debian buster/main amd64 openjdk-11-jre amd64 11.0.12+7-2~deb10u1 [174 kB] Get: 134 http://deb.debian.org/debian buster/main amd64 default-jre amd64 2:1.11-71 [1044 B] Get: 135 http://deb.debian.org/debian buster/main amd64 openjdk-11-jdk-headless amd64 11.0.12+7-2~deb10u1 [221 MB] Get: 136 http://deb.debian.org/debian buster/main amd64 default-jdk-headless amd64 2:1.11-71 [1104 B] Get: 137 http://deb.debian.org/debian buster/main amd64 openjdk-11-jdk amd64 11.0.12+7-2~deb10u1 [2693 kB] Get: 138 http://deb.debian.org/debian buster/main amd64 default-jdk amd64 2:1.11-71 [1056 B] Get: 139 http://deb.debian.org/debian buster/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB] Get: 140 http://deb.debian.org/debian buster/main amd64 gpgconf amd64 2.2.12-1+deb10u1 [510 kB] Get: 141 http://deb.debian.org/debian buster/main amd64 libksba8 amd64 1.3.5-2 [99.7 kB] Get: 142 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u1 [69.1 kB] Get: 143 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u1 [106 kB] Get: 144 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u6 [90.0 kB] Get: 145 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u6 [224 kB] Get: 146 http://deb.debian.org/debian buster/main amd64 libnpth0 amd64 1.6-1 [18.4 kB] Get: 147 http://deb.debian.org/debian buster/main amd64 dirmngr amd64 2.2.12-1+deb10u1 [712 kB] Get: 148 http://deb.debian.org/debian buster/main amd64 gnupg-l10n all 2.2.12-1+deb10u1 [1010 kB] Get: 149 http://deb.debian.org/debian buster/main amd64 gnupg-utils amd64 2.2.12-1+deb10u1 [861 kB] Get: 150 http://deb.debian.org/debian buster/main amd64 gpg amd64 2.2.12-1+deb10u1 [865 kB] Get: 151 http://deb.debian.org/debian buster/main amd64 pinentry-curses amd64 1.1.0-2 [64.5 kB] Get: 152 http://deb.debian.org/debian buster/main amd64 gpg-agent amd64 2.2.12-1+deb10u1 [617 kB] Get: 153 http://deb.debian.org/debian buster/main amd64 gpg-wks-client amd64 2.2.12-1+deb10u1 [485 kB] Get: 154 http://deb.debian.org/debian buster/main amd64 gpg-wks-server amd64 2.2.12-1+deb10u1 [478 kB] Get: 155 http://deb.debian.org/debian buster/main amd64 gpgsm amd64 2.2.12-1+deb10u1 [604 kB] Get: 156 http://deb.debian.org/debian buster/main amd64 gnupg all 2.2.12-1+deb10u1 [715 kB] Get: 157 http://deb.debian.org/debian buster/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get: 158 http://deb.debian.org/debian buster/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get: 159 http://deb.debian.org/debian buster/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get: 160 http://deb.debian.org/debian buster/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get: 161 http://deb.debian.org/debian buster/main amd64 libclass-method-modifiers-perl all 2.12-1 [18.6 kB] Get: 162 http://deb.debian.org/debian buster/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get: 163 http://deb.debian.org/debian buster/main amd64 libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get: 164 http://deb.debian.org/debian buster/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b1 [11.4 kB] Get: 165 http://deb.debian.org/debian buster/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get: 166 http://deb.debian.org/debian buster/main amd64 libdevel-callchecker-perl amd64 0.008-1 [15.7 kB] Get: 167 http://deb.debian.org/debian buster/main amd64 libparams-classify-perl amd64 0.015-1+b1 [25.5 kB] Get: 168 http://deb.debian.org/debian buster/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get: 169 http://deb.debian.org/debian buster/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get: 170 http://deb.debian.org/debian buster/main amd64 librole-tiny-perl all 2.000006-1 [19.4 kB] Get: 171 http://deb.debian.org/debian buster/main amd64 libstrictures-perl all 2.000005-1 [18.3 kB] Get: 172 http://deb.debian.org/debian buster/main amd64 libsub-quote-perl all 2.005001-1 [17.9 kB] Get: 173 http://deb.debian.org/debian buster/main amd64 libmoo-perl all 2.003004-2 [57.4 kB] Get: 174 http://deb.debian.org/debian buster/main amd64 libencode-locale-perl all 1.05-1 [13.7 kB] Get: 175 http://deb.debian.org/debian buster/main amd64 libtimedate-perl all 2.3000-2+deb10u1 [38.1 kB] Get: 176 http://deb.debian.org/debian buster/main amd64 libhttp-date-perl all 6.02-1 [10.7 kB] Get: 177 http://deb.debian.org/debian buster/main amd64 libfile-listing-perl all 6.04-1 [10.3 kB] Get: 178 http://deb.debian.org/debian buster/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get: 179 http://deb.debian.org/debian buster/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get: 180 http://deb.debian.org/debian buster/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get: 181 http://deb.debian.org/debian buster/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get: 182 http://deb.debian.org/debian buster/main amd64 libio-html-perl all 1.001-1 [17.6 kB] Get: 183 http://deb.debian.org/debian buster/main amd64 liblwp-mediatypes-perl all 6.02-1 [22.1 kB] Get: 184 http://deb.debian.org/debian buster/main amd64 libhttp-message-perl all 6.18-1 [77.8 kB] Get: 185 http://deb.debian.org/debian buster/main amd64 libhttp-cookies-perl all 6.04-1 [17.8 kB] Get: 186 http://deb.debian.org/debian buster/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get: 187 http://deb.debian.org/debian buster/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get: 188 http://deb.debian.org/debian buster/main amd64 libnet-ssleay-perl amd64 1.85-2+b1 [308 kB] Get: 189 http://deb.debian.org/debian buster/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get: 190 http://deb.debian.org/debian buster/main amd64 libnet-http-perl all 6.18-1 [24.5 kB] Get: 191 http://deb.debian.org/debian buster/main amd64 liblwp-protocol-https-perl all 6.07-2 [9242 B] Get: 192 http://deb.debian.org/debian buster/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get: 193 http://deb.debian.org/debian buster/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 194 http://deb.debian.org/debian buster/main amd64 libwww-perl all 6.36-2 [188 kB] Get: 195 http://deb.debian.org/debian buster/main amd64 patchutils amd64 0.3.4-2 [90.4 kB] Get: 196 http://deb.debian.org/debian buster/main amd64 wdiff amd64 1.2.2-2+b1 [122 kB] Get: 197 http://deb.debian.org/debian buster/main amd64 devscripts amd64 2.19.5+deb10u1 [1046 kB] Get: 198 http://deb.debian.org/debian buster/main amd64 dh-exec amd64 0.23.1 [26.3 kB] Get: 199 http://deb.debian.org/debian buster/main amd64 dh-linktree all 0.6 [10.7 kB] Get: 200 http://deb.debian.org/debian buster/main amd64 doxygen amd64 1.8.13-10 [3985 kB] Get: 201 http://deb.debian.org/debian buster/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get: 202 http://deb.debian.org/debian buster/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get: 203 http://deb.debian.org/debian buster/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get: 204 http://deb.debian.org/debian buster/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get: 205 http://deb.debian.org/debian buster/main amd64 libcairo2 amd64 1.16.0-4+deb10u1 [688 kB] Get: 206 http://deb.debian.org/debian buster/main amd64 libcdt5 amd64 2.40.1-6+deb10u1 [60.7 kB] Get: 207 http://deb.debian.org/debian buster/main amd64 libcgraph6 amd64 2.40.1-6+deb10u1 [84.2 kB] Get: 208 http://deb.debian.org/debian buster/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get: 209 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2+deb10u1 [261 kB] Get: 210 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u2 [271 kB] Get: 211 http://deb.debian.org/debian buster/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get: 212 http://deb.debian.org/debian buster/main amd64 libgd3 amd64 2.2.5-5.2 [136 kB] Get: 213 http://deb.debian.org/debian buster/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-4 [158 kB] Get: 214 http://deb.debian.org/debian buster/main amd64 libltdl7 amd64 2.4.6-9 [390 kB] Get: 215 http://deb.debian.org/debian buster/main amd64 libfribidi0 amd64 1.0.5-3.1+deb10u1 [63.7 kB] Get: 216 http://deb.debian.org/debian buster/main amd64 libthai-data all 0.1.28-2 [170 kB] Get: 217 http://deb.debian.org/debian buster/main amd64 libdatrie1 amd64 0.2.12-2 [39.3 kB] Get: 218 http://deb.debian.org/debian buster/main amd64 libthai0 amd64 0.1.28-2 [54.1 kB] Get: 219 http://deb.debian.org/debian buster/main amd64 libpango-1.0-0 amd64 1.42.4-8~deb10u1 [186 kB] Get: 220 http://deb.debian.org/debian buster/main amd64 libpangoft2-1.0-0 amd64 1.42.4-8~deb10u1 [68.3 kB] Get: 221 http://deb.debian.org/debian buster/main amd64 libpangocairo-1.0-0 amd64 1.42.4-8~deb10u1 [55.7 kB] Get: 222 http://deb.debian.org/debian buster/main amd64 libpathplan4 amd64 2.40.1-6+deb10u1 [63.6 kB] Get: 223 http://deb.debian.org/debian buster/main amd64 libxdot4 amd64 2.40.1-6+deb10u1 [57.0 kB] Get: 224 http://deb.debian.org/debian buster/main amd64 libgvc6 amd64 2.40.1-6+deb10u1 [646 kB] Get: 225 http://deb.debian.org/debian buster/main amd64 libgvpr2 amd64 2.40.1-6+deb10u1 [213 kB] Get: 226 http://deb.debian.org/debian buster/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get: 227 http://deb.debian.org/debian buster/main amd64 liblab-gamut1 amd64 2.40.1-6+deb10u1 [220 kB] Get: 228 http://deb.debian.org/debian buster/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 229 http://deb.debian.org/debian buster/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB] Get: 230 http://deb.debian.org/debian buster/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get: 231 http://deb.debian.org/debian buster/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get: 232 http://deb.debian.org/debian buster/main amd64 graphviz amd64 2.40.1-6+deb10u1 [596 kB] Get: 233 http://deb.debian.org/debian buster/main amd64 javahelper all 0.72.9 [96.4 kB] Get: 234 http://deb.debian.org/debian buster/main amd64 libnuma1 amd64 2.0.12-1 [26.2 kB] Get: 235 http://deb.debian.org/debian buster/main amd64 libhwloc5 amd64 1.11.12-3 [111 kB] Get: 236 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3+deb10u1 [332 kB] Get: 237 http://deb.debian.org/debian buster/main amd64 libpocl2-common all 1.2-5 [36.0 kB] Get: 238 http://deb.debian.org/debian buster/main amd64 libpocl2 amd64 1.2-5 [16.6 MB] Get: 239 http://deb.debian.org/debian buster/main amd64 opencl-c-headers all 2.2~2019.01.17-g49f07d3-1 [31.3 kB] Get: 240 http://deb.debian.org/debian buster/main amd64 ocl-icd-opencl-dev amd64 2.2.12-2 [10.7 kB] Get: 241 http://deb.debian.org/debian buster/main amd64 pocl-opencl-icd amd64 1.2-5 [18.2 kB] Fetched 396 MB in 6s (71.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../1-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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Unpacking libpcsclite1:amd64 (1.8.24-1) ... Selecting previously unselected package openjdk-11-jre-headless:amd64. Preparing to unpack .../037-openjdk-11-jre-headless_11.0.12+7-2~deb10u1_amd64.deb ... Unpacking openjdk-11-jre-headless:amd64 (11.0.12+7-2~deb10u1) ... Selecting previously unselected package default-jre-headless. Preparing to unpack .../038-default-jre-headless_2%3a1.11-71_amd64.deb ... Unpacking default-jre-headless (2:1.11-71) ... Selecting previously unselected package ant. Preparing to unpack .../039-ant_1.10.5-2_all.deb ... Unpacking ant (1.10.5-2) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../040-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../041-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../042-autoconf_2.69-11_all.deb ... 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Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u3) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up ocl-icd-opencl-dev:amd64 (2.2.12-2) ... Setting up autoconf (2.69-11) ... Setting up libxcb-dri2-0:amd64 (1.13.1-2) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libgvpr2 (2.40.1-6+deb10u1) ... Setting up libdrm2:amd64 (2.4.97-1) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up gpgconf (2.2.12-1+deb10u1) ... Setting up libllvm7:amd64 (1:7.0.1-8+deb10u2) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libavahi-client3:amd64 (0.7-4+deb10u1) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up gpg (2.2.12-1+deb10u1) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up libhttp-message-perl (6.18-1) ... Setting up libdrm-amdgpu1:amd64 (2.4.97-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:amd64 (1.13.1-2) ... Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libdrm-nouveau2:amd64 (2.4.97-1) ... Setting up gettext (0.19.8.1-9) ... Setting up gpg-agent (2.2.12-1+deb10u1) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libhttp-cookies-perl (6.04-1) ... Setting up libdrm-radeon1:amd64 (2.4.97-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libparams-classify-perl (0.015-1+b1) ... Setting up gpgsm (2.2.12-1+deb10u1) ... Setting up libdrm-intel1:amd64 (2.4.97-1) ... Setting up libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) ... Setting up libclang-common-6.0-dev (1:6.0.1-10) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dirmngr (2.2.12-1+deb10u1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up libxt6:amd64 (1:1.1.5-1+b3) ... Setting up gpg-wks-server (2.2.12-1+deb10u1) ... Setting up libcups2:amd64 (2.2.10-6+deb10u4) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up clang-6.0 (1:6.0.1-10) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libxmu6:amd64 (2:1.1.2-2+b3) ... Setting up libxdamage1:amd64 (1:1.1.4-3+b3) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up gpg-wks-client (2.2.12-1+deb10u1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up libmoo-perl (2.003004-2) ... Setting up po-debconf (1.0.21) ... Setting up libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up libcairo2:amd64 (1.16.0-4+deb10u1) ... Setting up libgd3:amd64 (2.2.5-5.2) ... Setting up libpocl2:amd64 (1.2-5) ... Setting up gnupg (2.2.12-1+deb10u1) ... Setting up libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libglx-mesa0:amd64 (18.3.6-2+deb10u1) ... Setting up libglx0:amd64 (1.1.0-1) ... Setting up libgl1:amd64 (1.1.0-1) ... Setting up pocl-opencl-icd:amd64 (1.2-5) ... Setting up libgvc6 (2.40.1-6+deb10u1) ... Setting up graphviz (2.40.1-6+deb10u1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up liblwp-protocol-https-perl (6.07-2) ... Setting up default-jre-headless (2:1.11-71) ... Setting up libwww-perl (6.36-2) ... Setting up openjdk-11-jre-headless:amd64 (11.0.12+7-2~deb10u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up debhelper (12.1.1) ... Setting up openjdk-11-jre:amd64 (11.0.12+7-2~deb10u1) ... Setting up dh-exec (0.23.1) ... Setting up openjdk-11-jdk-headless:amd64 (11.0.12+7-2~deb10u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jaotc to provide /usr/bin/jaotc (jaotc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre (2:1.11-71) ... Setting up default-jdk-headless (2:1.11-71) ... Setting up devscripts (2.19.5+deb10u1) ... Setting up ant (1.10.5-2) ... Setting up openjdk-11-jdk:amd64 (11.0.12+7-2~deb10u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up javahelper (0.72.9) ... Setting up ca-certificates-java (20190405) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Taiwan_GRCA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:LuxTrust_Global_Root_2.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:GTS_Root_R4.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R1.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DST_Root_CA_X3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Setting up dh-linktree (0.6) ... Setting up default-jdk (2:1.11-71) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/libhmsbeagle-3.1.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libhmsbeagle_3.1.2+dfsg-6_source.changes dpkg-buildpackage: info: source package libhmsbeagle dpkg-buildpackage: info: source version 3.1.2+dfsg-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Dylan Aïssi dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean LC_ALL=C.UTF-8 dh clean --with javahelper debian/rules override_dh_auto_clean make[1]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg' /usr/bin/make -f Makefile distclean || true make[2]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg' make[2]: Makefile: No such file or directory make[2]: *** No rule to make target 'Makefile'. Stop. make[2]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg' rm -rf doc .config configure rm -rf lib build make[1]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg' jh_clean rm -fr debian/_jh_manifest* debian/_jh_build* rm -fr debian/.eclipse-build rm -f debian/orbitdeps.debhelper dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libhmsbeagle-dev.substvars debian/libhmsbeagle1v5.substvars debian/libhmsbeagle-java.substvars debian/files rm -fr -- debian/libhmsbeagle-dev/ debian/tmp/ debian/libhmsbeagle1v5/ debian/libhmsbeagle-java/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build LC_ALL=C.UTF-8 dh build --with javahelper dh_update_autotools_config dh_autoreconf find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, '.config'. libtoolize: copying file '.config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:57: installing '.config/compile' configure.ac:63: installing '.config/config.guess' configure.ac:63: installing '.config/config.sub' configure.ac:55: installing '.config/install-sh' configure.ac:55: installing '.config/missing' Makefile.am: installing './INSTALL' examples/complextest/Makefile.am: installing '.config/depcomp' parallel-tests: installing '.config/test-driver' find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after debian/rules override_dh_auto_configure make[1]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg' ./autogen.sh libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, '.config'. libtoolize: copying file '.config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:57: installing '.config/compile' configure.ac:55: installing '.config/missing' examples/complextest/Makefile.am: installing '.config/depcomp' dh_auto_configure -- --enable-doxygen-man --enable-march-native=no --enable-sse=yes --with-opencl=/usr/include/CL ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-doxygen-man --enable-march-native=no --enable-sse=yes --with-opencl=/usr/include/CL configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking whether ln -s works... yes checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for library containing dlopen... -ldl checking for C compiler vendor... gnu checking for C compiler version... 8.3.0 checking for /usr/local/cuda/... no checking for /usr/local/cuda/include... no checking for /usr/local/cuda/lib... no checking for x86 cpuid 0x00000000 output... d:68747541:444d4163:69746e65 checking for x86 cpuid 0x80000000 output... 8000001a:68747541:444d4163:69746e65 checking for x86 cpuid 0x00000001 output... 600f12:5000800:9eb82203:78bfbff checking for x86 cpuid 0x00000007 output... 0:0:0:0 checking for x86 cpuid 0x80000001 output... 600f12:0:10be7:2dd3fbff checking for x86-AVX xgetbv 0x00000000 output... 7:0 checking whether RDRND is supported by the processor... no checking whether BMI1 is supported by the processor... no checking whether BMI2 is supported by the processor... no checking whether ADX is supported by the processor... no checking whether MPX is supported by the processor... no checking whether PREFETCHWT1 is supported by the processor... no checking whether ABM is supported by the processor... yes checking whether ABM is supported by the processor and OS... yes checking whether C compiler accepts -mabm... yes checking whether MMX is supported by the processor... yes checking whether MMX is supported by the processor and OS... yes checking whether C compiler accepts -mmmx... yes checking whether SSE is supported by the processor... yes checking whether SSE is supported by the processor and OS... yes checking whether C compiler accepts -msse... yes checking whether SSE2 is supported by the processor... yes checking whether SSE2 is supported by the processor and OS... yes checking whether C compiler accepts -msse2... yes checking whether SSE3 is supported by the processor... yes checking whether SSE3 is supported by the processor and OS... yes checking whether C compiler accepts -msse3... yes checking whether SSSE3 is supported by the processor... yes checking whether SSSE3 is supported by the processor and OS... yes checking whether C compiler accepts -mssse3... yes checking whether SSE4.1 is supported by the processor... yes checking whether SSE4.1 is supported by the processor and OS... yes checking whether C compiler accepts -msse4.1... yes checking whether SSE4.2 is supported by the processor... yes checking whether SSE4.2 is supported by the processor and OS... yes checking whether C compiler accepts -msse4.2... yes checking whether SSE4a is supported by the processor... yes checking whether SSE4a is supported by the processor and OS... yes checking whether C compiler accepts -msse4a... yes checking whether SHA is supported by the processor... no checking whether AES is supported by the processor... yes checking whether AES is supported by the processor and OS... yes checking whether C compiler accepts -maes... yes checking whether AVX is supported by the processor... yes checking whether AVX is supported by the processor and OS... yes checking whether C compiler accepts -mavx... yes checking whether FMA3 is supported by the processor... no checking whether FMA4 is supported by the processor... yes checking whether FMA4 is supported by the processor and OS... yes checking whether C compiler accepts -mfma4... yes checking whether XOP is supported by the processor... yes checking whether XOP is supported by the processor and OS... yes checking whether C compiler accepts -mxop... yes checking whether AVX2 is supported by the processor... no checking whether AVX512-F is supported by the processor... no checking whether AVX512-CD is supported by the processor... no checking whether AVX512-PF is supported by the processor... no checking whether AVX512-ER is supported by the processor... no checking whether AVX512-VL is supported by the processor... no checking whether AVX512-BW is supported by the processor... no checking whether AVX512-DQ is supported by the processor... no checking whether AVX512-IFMA is supported by the processor... no checking whether AVX512-VBMI is supported by the processor... no checking cpuid.h usability... yes checking cpuid.h presence... yes checking for cpuid.h... yes checking if javac works... yes checking for javac... /usr/bin/javac checking symlink for /usr/bin/javac... /etc/alternatives/javac checking symlink for /etc/alternatives/javac... /usr/lib/jvm/java-11-openjdk-amd64/bin/javac checking for /usr/lib/jvm/java-11-openjdk-amd64/bin/include/jni.h... no checking for /usr/lib/jvm/java-11-openjdk-amd64/include/jni.h... yes checking for doxygen... /usr/bin/doxygen checking for perl... /usr/bin/perl checking for dot... /usr/bin/dot checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating hmsbeagle-1.pc config.status: creating libhmsbeagle/Makefile config.status: creating libhmsbeagle/GPU/Makefile config.status: creating libhmsbeagle/GPU/kernels/Makefile config.status: creating libhmsbeagle/CPU/Makefile config.status: creating libhmsbeagle/plugin/Makefile config.status: creating libhmsbeagle/benchmark/Makefile config.status: creating libhmsbeagle/JNI/Makefile config.status: creating examples/Makefile config.status: creating examples/tinytest/Makefile config.status: creating examples/complextest/Makefile config.status: creating examples/oddstatetest/Makefile config.status: creating examples/fourtaxon/Makefile config.status: creating examples/synthetictest/Makefile config.status: creating examples/matrixtest/Makefile config.status: creating libhmsbeagle/config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode configure: WARNING: NVIDIA CUDA nvcc compiler not found or CUDA support disabled. CUDA implementation will not be built. If CUDA support is desired, check the path to CUDA and specify --with-cuda=/path/to/cuda make[1]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg' jh_linkjars rm -f debian/libhmsbeagle-dev.debhelper.log debian/libhmsbeagle-java.debhelper.log debian/libhmsbeagle1v5.debhelper.log debian/rules override_dh_auto_build make[1]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg' /usr/bin/make make[2]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg' Making all in libhmsbeagle make[3]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle' /usr/bin/make all-recursive make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle' Making all in GPU make[5]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU' Making all in kernels make[6]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU/kernels' echo "// auto-generated header file with OpenCL kernels code" > BeagleOpenCL_kernels.h echo "#define KERNELS_STRING_SP_4 \"" | sed 's/$/\\n\\/' >> BeagleOpenCL_kernels.h echo "#define STATE_COUNT 4" | sed 's/$/\\n\\/' >> BeagleOpenCL_kernels.h cat ./../GPUImplDefs.h | sed 's/\\/\\\\/g' | sed 's/\"/\\"/g' | sed 's/$/\\n\\/' >> BeagleOpenCL_kernels.h cat ./kernelsAll.cu | sed 's/\\/\\\\/g' | sed 's/\"/\\"/g' | sed 's/$/\\n\\/' >> BeagleOpenCL_kernels.h cat ./kernels4.cu | sed 's/\\/\\\\/g' | sed 's/\"/\\"/g' | sed 's/$/\\n\\/' >> BeagleOpenCL_kernels.h echo "\"" >> BeagleOpenCL_kernels.h for s in 16 32 48 64 80 128 192; do \ echo "Making state count = $s" ; \ echo "#define KERNELS_STRING_SP_$s \"" | sed 's/$/\\n\\/' >> BeagleOpenCL_kernels.h; \ echo "#define STATE_COUNT $s" | sed 's/$/\\n\\/' >> BeagleOpenCL_kernels.h; \ cat ./../GPUImplDefs.h | sed 's/\\/\\\\/g' | sed 's/\"/\\"/g' | sed 's/$/\\n\\/' >> BeagleOpenCL_kernels.h; \ cat ./kernelsAll.cu | sed 's/\\/\\\\/g' | sed 's/\"/\\"/g' | sed 's/$/\\n\\/' >> BeagleOpenCL_kernels.h; \ cat ./kernelsX.cu | sed 's/\\/\\\\/g' | sed 's/\"/\\"/g' | sed 's/$/\\n\\/' >> BeagleOpenCL_kernels.h; \ echo "\"" >> BeagleOpenCL_kernels.h; \ done Making state count = 16 Making state count = 32 Making state count = 48 Making state count = 64 Making state count = 80 Making state count = 128 Making state count = 192 echo "#define KERNELS_STRING_DP_4 \"" | sed 's/$/\\n\\/' >> BeagleOpenCL_kernels.h echo "#define STATE_COUNT 4" | sed 's/$/\\n\\/' >> BeagleOpenCL_kernels.h echo "#define DOUBLE_PRECISION" | sed 's/$/\\n\\/' >> BeagleOpenCL_kernels.h cat ./../GPUImplDefs.h | sed 's/\\/\\\\/g' | sed 's/\"/\\"/g' | sed 's/$/\\n\\/' >> BeagleOpenCL_kernels.h cat ./kernelsAll.cu | sed 's/\\/\\\\/g' | sed 's/\"/\\"/g' | sed 's/$/\\n\\/' >> BeagleOpenCL_kernels.h cat ./kernels4.cu | sed 's/\\/\\\\/g' | sed 's/\"/\\"/g' | sed 's/$/\\n\\/' >> BeagleOpenCL_kernels.h echo "\"" >> BeagleOpenCL_kernels.h for s in 16 32 48 64 80 128 192; do \ echo "Making state count = $s DP"; \ echo "#define KERNELS_STRING_DP_$s \"" | sed 's/$/\\n\\/' >> BeagleOpenCL_kernels.h; \ echo "#define STATE_COUNT $s" | sed 's/$/\\n\\/' >> BeagleOpenCL_kernels.h; \ echo "#define DOUBLE_PRECISION" | sed 's/$/\\n\\/' >> BeagleOpenCL_kernels.h; \ cat ./../GPUImplDefs.h | sed 's/\\/\\\\/g' | sed 's/\"/\\"/g' | sed 's/$/\\n\\/' >> BeagleOpenCL_kernels.h; \ cat ./kernelsAll.cu | sed 's/\\/\\\\/g' | sed 's/\"/\\"/g' | sed 's/$/\\n\\/' >> BeagleOpenCL_kernels.h; \ cat ./kernelsX.cu | sed 's/\\/\\\\/g' | sed 's/\"/\\"/g' | sed 's/$/\\n\\/' >> BeagleOpenCL_kernels.h; \ echo "\"" >> BeagleOpenCL_kernels.h; \ done Making state count = 16 DP Making state count = 32 DP Making state count = 48 DP Making state count = 64 DP Making state count = 80 DP Making state count = 128 DP Making state count = 192 DP /usr/bin/make all-am make[7]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU/kernels' make[7]: Nothing to be done for 'all-am'. make[7]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU/kernels' make[6]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU/kernels' make[6]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/build/libhmsbeagle-3.1.2+dfsg -I/build/libhmsbeagle-3.1.2+dfsg -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -D FW_OPENCL -I/usr/include/CL/include -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libhmsbeagle_opencl_la-GPUImplHelper.lo `test -f 'GPUImplHelper.cpp' || echo './'`GPUImplHelper.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/build/libhmsbeagle-3.1.2+dfsg -I/build/libhmsbeagle-3.1.2+dfsg -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -D FW_OPENCL -I/usr/include/CL/include -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c GPUImplHelper.cpp -fPIC -DPIC -o .libs/libhmsbeagle_opencl_la-GPUImplHelper.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/build/libhmsbeagle-3.1.2+dfsg -I/build/libhmsbeagle-3.1.2+dfsg -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -D FW_OPENCL -I/usr/include/CL/include -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c GPUImplHelper.cpp -o libhmsbeagle_opencl_la-GPUImplHelper.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/build/libhmsbeagle-3.1.2+dfsg -I/build/libhmsbeagle-3.1.2+dfsg -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -D FW_OPENCL -I/usr/include/CL/include -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libhmsbeagle_opencl_la-GPUInterfaceOpenCL.lo `test -f 'GPUInterfaceOpenCL.cpp' || echo './'`GPUInterfaceOpenCL.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/build/libhmsbeagle-3.1.2+dfsg -I/build/libhmsbeagle-3.1.2+dfsg -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -D FW_OPENCL -I/usr/include/CL/include -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c GPUInterfaceOpenCL.cpp -fPIC -DPIC -o .libs/libhmsbeagle_opencl_la-GPUInterfaceOpenCL.o In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU/GPUInterface.h:60, from GPUInterfaceOpenCL.cpp:39: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/build/libhmsbeagle-3.1.2+dfsg -I/build/libhmsbeagle-3.1.2+dfsg -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -D FW_OPENCL -I/usr/include/CL/include -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c GPUInterfaceOpenCL.cpp -o libhmsbeagle_opencl_la-GPUInterfaceOpenCL.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/build/libhmsbeagle-3.1.2+dfsg -I/build/libhmsbeagle-3.1.2+dfsg -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -D FW_OPENCL -I/usr/include/CL/include -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libhmsbeagle_opencl_la-KernelLauncher.lo `test -f 'KernelLauncher.cpp' || echo './'`KernelLauncher.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/build/libhmsbeagle-3.1.2+dfsg -I/build/libhmsbeagle-3.1.2+dfsg -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -D FW_OPENCL -I/usr/include/CL/include -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c KernelLauncher.cpp -fPIC -DPIC -o .libs/libhmsbeagle_opencl_la-KernelLauncher.o In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU/GPUInterface.h:60, from /build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU/KernelLauncher.h:35, from KernelLauncher.cpp:36: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/build/libhmsbeagle-3.1.2+dfsg -I/build/libhmsbeagle-3.1.2+dfsg -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -D FW_OPENCL -I/usr/include/CL/include -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c KernelLauncher.cpp -o libhmsbeagle_opencl_la-KernelLauncher.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/build/libhmsbeagle-3.1.2+dfsg -I/build/libhmsbeagle-3.1.2+dfsg -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -D FW_OPENCL -I/usr/include/CL/include -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libhmsbeagle_opencl_la-KernelResource.lo `test -f 'KernelResource.cpp' || echo './'`KernelResource.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/build/libhmsbeagle-3.1.2+dfsg -I/build/libhmsbeagle-3.1.2+dfsg -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -D FW_OPENCL -I/usr/include/CL/include -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c KernelResource.cpp -fPIC -DPIC -o .libs/libhmsbeagle_opencl_la-KernelResource.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/build/libhmsbeagle-3.1.2+dfsg -I/build/libhmsbeagle-3.1.2+dfsg -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -D FW_OPENCL -I/usr/include/CL/include -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c KernelResource.cpp -o libhmsbeagle_opencl_la-KernelResource.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/build/libhmsbeagle-3.1.2+dfsg -I/build/libhmsbeagle-3.1.2+dfsg -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -D FW_OPENCL -I/usr/include/CL/include -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libhmsbeagle_opencl_la-OpenCLPlugin.lo `test -f 'OpenCLPlugin.cpp' || echo './'`OpenCLPlugin.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/build/libhmsbeagle-3.1.2+dfsg -I/build/libhmsbeagle-3.1.2+dfsg -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -D FW_OPENCL -I/usr/include/CL/include -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c OpenCLPlugin.cpp -fPIC -DPIC -o .libs/libhmsbeagle_opencl_la-OpenCLPlugin.o In file included from /usr/include/CL/cl.h:32, from /usr/include/CL/opencl.h:38, from /build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU/GPUInterface.h:60, from /build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU/BeagleGPUImpl.h:39, from OpenCLPlugin.cpp:8: /usr/include/CL/cl_version.h:34:104: note: #pragma message: cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2) #pragma message("cl_version.h: CL_TARGET_OPENCL_VERSION is not defined. Defaulting to 220 (OpenCL 2.2)") ^ libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/build/libhmsbeagle-3.1.2+dfsg -I/build/libhmsbeagle-3.1.2+dfsg -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -D FW_OPENCL -I/usr/include/CL/include -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c OpenCLPlugin.cpp -o libhmsbeagle_opencl_la-OpenCLPlugin.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CXX --mode=link g++ -O3 -std=c++11 -D FW_OPENCL -I/usr/include/CL/include -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -module -version-number 31 -Wl,-z,relro -Wl,-z,now -o libhmsbeagle-opencl.la -rpath /usr/lib/x86_64-linux-gnu libhmsbeagle_opencl_la-GPUImplHelper.lo libhmsbeagle_opencl_la-GPUInterfaceOpenCL.lo libhmsbeagle_opencl_la-KernelLauncher.lo libhmsbeagle_opencl_la-KernelResource.lo libhmsbeagle_opencl_la-OpenCLPlugin.lo -lOpenCL -ldl libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o .libs/libhmsbeagle_opencl_la-GPUImplHelper.o .libs/libhmsbeagle_opencl_la-GPUInterfaceOpenCL.o .libs/libhmsbeagle_opencl_la-KernelLauncher.o .libs/libhmsbeagle_opencl_la-KernelResource.o .libs/libhmsbeagle_opencl_la-OpenCLPlugin.o -lOpenCL -ldl -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -O3 -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libhmsbeagle-opencl.so.31 -o .libs/libhmsbeagle-opencl.so.31.0.0 libtool: link: (cd ".libs" && rm -f "libhmsbeagle-opencl.so.31" && ln -s "libhmsbeagle-opencl.so.31.0.0" "libhmsbeagle-opencl.so.31") libtool: link: (cd ".libs" && rm -f "libhmsbeagle-opencl.so" && ln -s "libhmsbeagle-opencl.so.31.0.0" "libhmsbeagle-opencl.so") libtool: link: ar cru .libs/libhmsbeagle-opencl.a libhmsbeagle_opencl_la-GPUImplHelper.o libhmsbeagle_opencl_la-GPUInterfaceOpenCL.o libhmsbeagle_opencl_la-KernelLauncher.o libhmsbeagle_opencl_la-KernelResource.o libhmsbeagle_opencl_la-OpenCLPlugin.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libhmsbeagle-opencl.a libtool: link: ( cd ".libs" && rm -f "libhmsbeagle-opencl.la" && ln -s "../libhmsbeagle-opencl.la" "libhmsbeagle-opencl.la" ) make[6]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU' make[5]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU' Making all in CPU make[5]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/CPU' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/build/libhmsbeagle-3.1.2+dfsg -I/build/libhmsbeagle-3.1.2+dfsg -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -pthread -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libhmsbeagle_cpu_la-BeagleCPUPlugin.lo `test -f 'BeagleCPUPlugin.cpp' || echo './'`BeagleCPUPlugin.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/build/libhmsbeagle-3.1.2+dfsg -I/build/libhmsbeagle-3.1.2+dfsg -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -pthread -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BeagleCPUPlugin.cpp -fPIC -DPIC -o .libs/libhmsbeagle_cpu_la-BeagleCPUPlugin.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/build/libhmsbeagle-3.1.2+dfsg -I/build/libhmsbeagle-3.1.2+dfsg -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -pthread -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BeagleCPUPlugin.cpp -o libhmsbeagle_cpu_la-BeagleCPUPlugin.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CXX --mode=link g++ -O3 -std=c++11 -pthread -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -module -version-number 31 -Wl,-z,relro -Wl,-z,now -o libhmsbeagle-cpu.la -rpath /usr/lib/x86_64-linux-gnu libhmsbeagle_cpu_la-BeagleCPUPlugin.lo -lpthread -ldl libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o .libs/libhmsbeagle_cpu_la-BeagleCPUPlugin.o -lpthread -ldl -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -O3 -pthread -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -Wl,-soname -Wl,libhmsbeagle-cpu.so.31 -o .libs/libhmsbeagle-cpu.so.31.0.0 libtool: link: (cd ".libs" && rm -f "libhmsbeagle-cpu.so.31" && ln -s "libhmsbeagle-cpu.so.31.0.0" "libhmsbeagle-cpu.so.31") libtool: link: (cd ".libs" && rm -f "libhmsbeagle-cpu.so" && ln -s "libhmsbeagle-cpu.so.31.0.0" "libhmsbeagle-cpu.so") libtool: link: ar cru .libs/libhmsbeagle-cpu.a libhmsbeagle_cpu_la-BeagleCPUPlugin.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libhmsbeagle-cpu.a libtool: link: ( cd ".libs" && rm -f "libhmsbeagle-cpu.la" && ln -s "../libhmsbeagle-cpu.la" "libhmsbeagle-cpu.la" ) /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/build/libhmsbeagle-3.1.2+dfsg -I/build/libhmsbeagle-3.1.2+dfsg -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -pthread -msse2 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libhmsbeagle_cpu_sse_la-BeagleCPUSSEPlugin.lo `test -f 'BeagleCPUSSEPlugin.cpp' || echo './'`BeagleCPUSSEPlugin.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/build/libhmsbeagle-3.1.2+dfsg -I/build/libhmsbeagle-3.1.2+dfsg -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -pthread -msse2 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BeagleCPUSSEPlugin.cpp -fPIC -DPIC -o .libs/libhmsbeagle_cpu_sse_la-BeagleCPUSSEPlugin.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I/build/libhmsbeagle-3.1.2+dfsg -I/build/libhmsbeagle-3.1.2+dfsg -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -pthread -msse2 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BeagleCPUSSEPlugin.cpp -o libhmsbeagle_cpu_sse_la-BeagleCPUSSEPlugin.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CXX --mode=link g++ -O3 -std=c++11 -pthread -msse2 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -module -version-number 31 -Wl,-z,relro -Wl,-z,now -o libhmsbeagle-cpu-sse.la -rpath /usr/lib/x86_64-linux-gnu libhmsbeagle_cpu_sse_la-BeagleCPUSSEPlugin.lo -lpthread -ldl libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o .libs/libhmsbeagle_cpu_sse_la-BeagleCPUSSEPlugin.o -lpthread -ldl -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -O3 -pthread -msse2 -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -pthread -Wl,-soname -Wl,libhmsbeagle-cpu-sse.so.31 -o .libs/libhmsbeagle-cpu-sse.so.31.0.0 libtool: link: (cd ".libs" && rm -f "libhmsbeagle-cpu-sse.so.31" && ln -s "libhmsbeagle-cpu-sse.so.31.0.0" "libhmsbeagle-cpu-sse.so.31") libtool: link: (cd ".libs" && rm -f "libhmsbeagle-cpu-sse.so" && ln -s "libhmsbeagle-cpu-sse.so.31.0.0" "libhmsbeagle-cpu-sse.so") libtool: link: ar cru .libs/libhmsbeagle-cpu-sse.a libhmsbeagle_cpu_sse_la-BeagleCPUSSEPlugin.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libhmsbeagle-cpu-sse.a libtool: link: ( cd ".libs" && rm -f "libhmsbeagle-cpu-sse.la" && ln -s "../libhmsbeagle-cpu-sse.la" "libhmsbeagle-cpu-sse.la" ) make[5]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/CPU' Making all in plugin make[5]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/plugin' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libplugin_la-Plugin.lo `test -f 'Plugin.cpp' || echo './'`Plugin.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c Plugin.cpp -fPIC -DPIC -o .libs/libplugin_la-Plugin.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c Plugin.cpp -o libplugin_la-Plugin.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libplugin_la-UnixSharedLibrary.lo `test -f 'UnixSharedLibrary.cpp' || echo './'`UnixSharedLibrary.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c UnixSharedLibrary.cpp -fPIC -DPIC -o .libs/libplugin_la-UnixSharedLibrary.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c UnixSharedLibrary.cpp -o libplugin_la-UnixSharedLibrary.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CXX --mode=link g++ -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o libplugin.la libplugin_la-Plugin.lo libplugin_la-UnixSharedLibrary.lo -ldl libtool: link: ar cru .libs/libplugin.a .libs/libplugin_la-Plugin.o .libs/libplugin_la-UnixSharedLibrary.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libplugin.a libtool: link: ( cd ".libs" && rm -f "libplugin.la" && ln -s "../libplugin.la" "libplugin.la" ) make[5]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/plugin' Making all in benchmark make[5]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/benchmark' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libbenchmark_la-BeagleBenchmark.lo `test -f 'BeagleBenchmark.cpp' || echo './'`BeagleBenchmark.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BeagleBenchmark.cpp -fPIC -DPIC -o .libs/libbenchmark_la-BeagleBenchmark.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c BeagleBenchmark.cpp -o libbenchmark_la-BeagleBenchmark.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libbenchmark_la-linalg.lo `test -f 'linalg.cpp' || echo './'`linalg.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c linalg.cpp -fPIC -DPIC -o .libs/libbenchmark_la-linalg.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c linalg.cpp -o libbenchmark_la-linalg.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CXX --mode=link g++ -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o libbenchmark.la libbenchmark_la-BeagleBenchmark.lo libbenchmark_la-linalg.lo -ldl libtool: link: ar cru .libs/libbenchmark.a .libs/libbenchmark_la-BeagleBenchmark.o .libs/libbenchmark_la-linalg.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libbenchmark.a libtool: link: ( cd ".libs" && rm -f "libbenchmark.la" && ln -s "../libbenchmark.la" "libbenchmark.la" ) make[5]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/benchmark' make[5]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libhmsbeagle_la-beagle.lo `test -f 'beagle.cpp' || echo './'`beagle.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c beagle.cpp -fPIC -DPIC -o .libs/libhmsbeagle_la-beagle.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c beagle.cpp -o libhmsbeagle_la-beagle.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 4:2:3 -Wl,-z,relro -Wl,-z,now -o libhmsbeagle.la -rpath /usr/lib/x86_64-linux-gnu libhmsbeagle_la-beagle.lo plugin/libplugin.la benchmark/libbenchmark.la -lpthread -ldl libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o .libs/libhmsbeagle_la-beagle.o -Wl,--whole-archive plugin/.libs/libplugin.a benchmark/.libs/libbenchmark.a -Wl,--no-whole-archive -lpthread -ldl -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -O3 -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libhmsbeagle.so.1 -o .libs/libhmsbeagle.so.1.3.2 libtool: link: (cd ".libs" && rm -f "libhmsbeagle.so.1" && ln -s "libhmsbeagle.so.1.3.2" "libhmsbeagle.so.1") libtool: link: (cd ".libs" && rm -f "libhmsbeagle.so" && ln -s "libhmsbeagle.so.1.3.2" "libhmsbeagle.so") libtool: link: (cd .libs/libhmsbeagle.lax/libplugin.a && ar x "/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/plugin/.libs/libplugin.a") libtool: link: (cd .libs/libhmsbeagle.lax/libbenchmark.a && ar x "/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/benchmark/.libs/libbenchmark.a") libtool: link: ar cru .libs/libhmsbeagle.a libhmsbeagle_la-beagle.o .libs/libhmsbeagle.lax/libplugin.a/libplugin_la-Plugin.o .libs/libhmsbeagle.lax/libplugin.a/libplugin_la-UnixSharedLibrary.o .libs/libhmsbeagle.lax/libbenchmark.a/libbenchmark_la-BeagleBenchmark.o .libs/libhmsbeagle.lax/libbenchmark.a/libbenchmark_la-linalg.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libhmsbeagle.a libtool: link: rm -fr .libs/libhmsbeagle.lax libtool: link: ( cd ".libs" && rm -f "libhmsbeagle.la" && ln -s "../libhmsbeagle.la" "libhmsbeagle.la" ) make[5]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle' make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle' make[3]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle' Making all in libhmsbeagle/JNI make[3]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/JNI' /bin/bash ../../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.lo `test -f 'beagle_BeagleJNIWrapper.cpp' || echo './'`beagle_BeagleJNIWrapper.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c beagle_BeagleJNIWrapper.cpp -fPIC -DPIC -o .libs/libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c beagle_BeagleJNIWrapper.cpp -o libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.o >/dev/null 2>&1 /bin/bash ../../libtool --tag=CXX --mode=link g++ -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -module -avoid-version -Wl,-z,relro -Wl,-z,now -o libhmsbeagle-jni.la -rpath /usr/lib/x86_64-linux-gnu libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.lo -L../../libhmsbeagle -lhmsbeagle -ldl libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o .libs/libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.o -Wl,-rpath -Wl,/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/.libs -L../../libhmsbeagle /build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/.libs/libhmsbeagle.so -ldl -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -O3 -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libhmsbeagle-jni.so -o .libs/libhmsbeagle-jni.so libtool: link: ar cru .libs/libhmsbeagle-jni.a libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libhmsbeagle-jni.a libtool: link: ( cd ".libs" && rm -f "libhmsbeagle-jni.la" && ln -s "../libhmsbeagle-jni.la" "libhmsbeagle-jni.la" ) make[3]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/JNI' Making all in examples make[3]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples' Making all in synthetictest make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/synthetictest' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/synthetictest' Making all in tinytest make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/tinytest' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/tinytest' Making all in oddstatetest make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/oddstatetest' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/oddstatetest' Making all in complextest make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/complextest' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/complextest' Making all in fourtaxon make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/fourtaxon' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/fourtaxon' Making all in matrixtest make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/matrixtest' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/matrixtest' make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples' make[3]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples' make[3]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg' make[3]: Nothing to be done for 'all-am'. make[3]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg' make[2]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg' /usr/bin/make doxygen-doc make[2]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg' rm -rf doc SRCDIR='.' PROJECT='libhmsbeagle' DOCDIR='doc' VERSION='3.1.2' PERL_PATH='/usr/bin/perl' HAVE_DOT='YES' DOT_PATH='/usr/bin' GENERATE_MAN='YES' GENERATE_RTF='NO' GENERATE_XML='NO' GENERATE_HTMLHELP='NO' GENERATE_CHI='NO' GENERATE_HTML='YES' GENERATE_LATEX='NO' /usr/bin/doxygen ./beagle.dox warning: Tag `XML_SCHEMA' at line 1786 of file `./beagle.dox' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag `XML_DTD' at line 1792 of file `./beagle.dox' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" /build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/beagle.h:636: warning: argument 'inPartitionPatternWeights' of command @param is not found in the argument list of beagleConvolveTransitionMatrices(int instance, const int *firstIndices, const int *secondIndices, const int *resultIndices, int matrixCount) /build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/beagle.h:636: warning: argument 'partitionCount' of command @param is not found in the argument list of beagleConvolveTransitionMatrices(int instance, const int *firstIndices, const int *secondIndices, const int *resultIndices, int matrixCount) Notice: Output directory `doc' does not exist. I have created it for you. Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle Reading and parsing tag files Parsing files Preprocessing /build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/beagle.h... Parsing file /build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/beagle.h... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Associating documentation with classes... Computing nesting relations for classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Freeing entry tree Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Computing dependencies between directories... Generating citations page... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file libhmsbeagle/beagle.h... Generating file documentation... Generating docs for file libhmsbeagle/beagle.h... Generating page documentation... Generating group documentation... Generating class documentation... Generating docs for compound BeagleBenchmarkedResource... Generating docs for compound BeagleBenchmarkedResourceList... Generating docs for compound BeagleInstanceDetails... Generating docs for compound BeagleOperation... Generating docs for compound BeagleOperationByPartition... Generating docs for compound BeagleResource... Generating docs for compound BeagleResourceList... Generating namespace index... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating graphical class hierarchy... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running dot... Generating dot graphs using 7 parallel threads... Running dot for graph 1/4 Running dot for graph 2/4 Running dot for graph 3/4 Running dot for graph 4/4 Patching output file 1/3 Patching output file 2/3 Patching output file 3/3 lookup cache used 156/65536 hits=235 misses=157 finished... make[2]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg' ant Buildfile: /build/libhmsbeagle-3.1.2+dfsg/build.xml init: [mkdir] Created dir: /build/libhmsbeagle-3.1.2+dfsg/build [mkdir] Created dir: /build/libhmsbeagle-3.1.2+dfsg/lib compile: [javac] /build/libhmsbeagle-3.1.2+dfsg/build.xml:37: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds [javac] Compiling 14 source files to /build/libhmsbeagle-3.1.2+dfsg/build [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] 4 warnings dist: [jar] Building jar: /build/libhmsbeagle-3.1.2+dfsg/lib/beagle.jar BUILD SUCCESSFUL Total time: 1 second make[1]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg' # VERBOSE=1 dh_auto_test # pbuilder has set HOME=/nonexistent. Since some valid HOME is needed # to pass the test this is set to /tmp # # Ignore test failures which are most probably not relevant on real # hardware but occur in restricted Debian build environment # https://github.com/beagle-dev/beagle-lib/issues/121 HOME=/tmp make check VERBOSE=1 || true make[2]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg' Making check in libhmsbeagle make[3]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle' Making check in GPU make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU' Making check in kernels make[5]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU/kernels' make check-am make[6]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU/kernels' make[6]: Nothing to be done for 'check-am'. make[6]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU/kernels' make[5]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU/kernels' make[5]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU' make[5]: Nothing to be done for 'check-am'. make[5]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU' make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU' Making check in CPU make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/CPU' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/CPU' Making check in plugin make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/plugin' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/plugin' Making check in benchmark make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/benchmark' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/benchmark' make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle' make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle' make[3]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle' Making check in libhmsbeagle/JNI make[3]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/JNI' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/JNI' Making check in examples make[3]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples' Making check in synthetictest make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/synthetictest' make synthetictest synthetictest.sh make[5]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/synthetictest' g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o synthetictest.o synthetictest.cpp g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o linalg.o linalg.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o synthetictest synthetictest.o linalg.o ../../libhmsbeagle/libhmsbeagle.la -ldl libtool: link: g++ -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/synthetictest synthetictest.o linalg.o ../../libhmsbeagle/.libs/libhmsbeagle.so -ldl echo './synthetictest' > synthetictest.sh echo './synthetictest --states 64 --sites 100 --taxa 10' >> synthetictest.sh chmod +x synthetictest.sh make[5]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/synthetictest' make check-TESTS make[5]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/synthetictest' make[6]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/synthetictest' PASS: synthetictest.sh ============================================================================ Testsuite summary for libhmsbeagle 3.1.2 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[6]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/synthetictest' make[5]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/synthetictest' make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/synthetictest' Making check in tinytest make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/tinytest' make tinytest make[5]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/tinytest' g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o tinytest.o tinytest.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o tinytest tinytest.o ../../libhmsbeagle/libhmsbeagle.la -ldl libtool: link: g++ -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/tinytest tinytest.o ../../libhmsbeagle/.libs/libhmsbeagle.so -ldl make[5]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/tinytest' make check-TESTS make[5]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/tinytest' make[6]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/tinytest' PASS: tinytest ============================================================================ Testsuite summary for libhmsbeagle 3.1.2 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[6]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/tinytest' make[5]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/tinytest' make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/tinytest' Making check in oddstatetest make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/oddstatetest' make oddstatetest make[5]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/oddstatetest' g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o oddstatetest.o oddstatetest.cpp oddstatetest.cpp: In function ‘int main(int, const char**)’: oddstatetest.cpp:444:36: warning: passing NULL to non-pointer argument 1 of ‘void runBeagle(int, int, int, int, bool, bool, int)’ [-Wconversion-null] rateCategoryCount); ^ /bin/bash ../../libtool --tag=CXX --mode=link g++ -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o oddstatetest oddstatetest.o ../../libhmsbeagle/libhmsbeagle.la -ldl libtool: link: g++ -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/oddstatetest oddstatetest.o ../../libhmsbeagle/.libs/libhmsbeagle.so -ldl make[5]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/oddstatetest' make check-TESTS make[5]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/oddstatetest' make[6]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/oddstatetest' PASS: oddstatetest ============================================================================ Testsuite summary for libhmsbeagle 3.1.2 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[6]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/oddstatetest' make[5]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/oddstatetest' make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/oddstatetest' Making check in complextest make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/complextest' make complextest make[5]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/complextest' g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o complextest.o complextest.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o complextest complextest.o ../../libhmsbeagle/libhmsbeagle.la -ldl libtool: link: g++ -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/complextest complextest.o ../../libhmsbeagle/.libs/libhmsbeagle.so -ldl make[5]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/complextest' make check-TESTS make[5]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/complextest' make[6]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/complextest' PASS: complextest ============================================================================ Testsuite summary for libhmsbeagle 3.1.2 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[6]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/complextest' make[5]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/complextest' make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/complextest' Making check in fourtaxon make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/fourtaxon' make fourtaxon fourtaxonrun.sh make[5]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/fourtaxon' g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fourtaxon.o fourtaxon.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o fourtaxon fourtaxon.o ../../libhmsbeagle/libhmsbeagle.la -ldl libtool: link: g++ -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/fourtaxon fourtaxon.o ../../libhmsbeagle/.libs/libhmsbeagle.so -ldl echo './fourtaxon --niters 4 --filename ./fourtaxon.dat' > fourtaxonrun.sh chmod +x fourtaxonrun.sh make[5]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/fourtaxon' make check-TESTS make[5]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/fourtaxon' make[6]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/fourtaxon' PASS: fourtaxonrun.sh ============================================================================ Testsuite summary for libhmsbeagle 3.1.2 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[6]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/fourtaxon' make[5]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/fourtaxon' make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/fourtaxon' Making check in matrixtest make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/matrixtest' make matrixtest make[5]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/matrixtest' g++ -DHAVE_CONFIG_H -I. -I../../libhmsbeagle -I../.. -I../.. -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/lib/jvm/java-11-openjdk-amd64/include -I/usr/lib/jvm/java-11-openjdk-amd64/include/linux -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c -o matrixtest.o matrixtest.cpp /bin/bash ../../libtool --tag=CXX --mode=link g++ -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o matrixtest matrixtest.o ../../libhmsbeagle/libhmsbeagle.la -ldl libtool: link: g++ -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/matrixtest matrixtest.o ../../libhmsbeagle/.libs/libhmsbeagle.so -ldl make[5]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/matrixtest' make check-TESTS make[5]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/matrixtest' make[6]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/matrixtest' FAIL: matrixtest ============================================================ libhmsbeagle 3.1.2: examples/matrixtest/test-suite.log ============================================================ # TOTAL: 1 # PASS: 0 # SKIP: 0 # XFAIL: 0 # FAIL: 1 # XPASS: 0 # ERROR: 0 .. contents:: :depth: 2 FAIL: matrixtest ================ OpenCL error: CL_INVALID_VALUE from file , line 924. Using resource 1: Rsrc Name : pthread-AMD Opteron 62xx class CPU (OpenCL 1.2 pocl HSTR: pthread-x86_64-pc-linux-gnu-bdver1) Impl : OpenCL-Double Impl Desc : none FAIL matrixtest (exit status: 255) ============================================================================ Testsuite summary for libhmsbeagle 3.1.2 ============================================================================ # TOTAL: 1 # PASS: 0 # SKIP: 0 # XFAIL: 0 # FAIL: 1 # XPASS: 0 # ERROR: 0 ============================================================================ See examples/matrixtest/test-suite.log Please report to beagle-dev@googlegroups.com ============================================================================ make[6]: *** [Makefile:722: test-suite.log] Error 1 make[6]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/matrixtest' make[5]: *** [Makefile:830: check-TESTS] Error 2 make[5]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/matrixtest' make[4]: *** [Makefile:904: check-am] Error 2 make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/matrixtest' make[3]: *** [Makefile:413: check-recursive] Error 1 make[3]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples' make[2]: *** [Makefile:611: check-recursive] Error 1 make[2]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg' make[1]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary LC_ALL=C.UTF-8 dh binary --with javahelper dh_testroot dh_prep rm -f -- debian/libhmsbeagle-dev.substvars debian/libhmsbeagle1v5.substvars debian/libhmsbeagle-java.substvars rm -fr -- debian/.debhelper/generated/libhmsbeagle-dev/ debian/libhmsbeagle-dev/ debian/tmp/ debian/.debhelper/generated/libhmsbeagle1v5/ debian/libhmsbeagle1v5/ debian/.debhelper/generated/libhmsbeagle-java/ debian/libhmsbeagle-java/ dh_installdirs install -d debian/libhmsbeagle-dev/usr/lib debian/libhmsbeagle-dev/usr/include install -d debian/libhmsbeagle1v5/usr/lib dh_auto_install install -d /build/libhmsbeagle-3.1.2\+dfsg/debian/tmp make -j1 install DESTDIR=/build/libhmsbeagle-3.1.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg' Making install in libhmsbeagle make[2]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle' Making install in GPU make[3]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU' Making install in kernels make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU/kernels' make install-am make[5]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU/kernels' make[6]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU/kernels' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU/kernels' make[5]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU/kernels' make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU/kernels' make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU' make[5]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU' /bin/mkdir -p '/build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../../libtool --mode=install /usr/bin/install -c libhmsbeagle-opencl.la '/build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libhmsbeagle-opencl.so.31.0.0 /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-opencl.so.31.0.0 libtool: install: (cd /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libhmsbeagle-opencl.so.31.0.0 libhmsbeagle-opencl.so.31 || { rm -f libhmsbeagle-opencl.so.31 && ln -s libhmsbeagle-opencl.so.31.0.0 libhmsbeagle-opencl.so.31; }; }) libtool: install: (cd /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libhmsbeagle-opencl.so.31.0.0 libhmsbeagle-opencl.so || { rm -f libhmsbeagle-opencl.so && ln -s libhmsbeagle-opencl.so.31.0.0 libhmsbeagle-opencl.so; }; }) libtool: install: /usr/bin/install -c .libs/libhmsbeagle-opencl.lai /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-opencl.la libtool: install: /usr/bin/install -c .libs/libhmsbeagle-opencl.a /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-opencl.a libtool: install: chmod 644 /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-opencl.a libtool: install: ranlib /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-opencl.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU' make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU' make[3]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/GPU' Making install in CPU make[3]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/CPU' make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/CPU' /bin/mkdir -p '/build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../../libtool --mode=install /usr/bin/install -c libhmsbeagle-cpu.la libhmsbeagle-cpu-sse.la '/build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libhmsbeagle-cpu.so.31.0.0 /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu.so.31.0.0 libtool: install: (cd /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libhmsbeagle-cpu.so.31.0.0 libhmsbeagle-cpu.so.31 || { rm -f libhmsbeagle-cpu.so.31 && ln -s libhmsbeagle-cpu.so.31.0.0 libhmsbeagle-cpu.so.31; }; }) libtool: install: (cd /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libhmsbeagle-cpu.so.31.0.0 libhmsbeagle-cpu.so || { rm -f libhmsbeagle-cpu.so && ln -s libhmsbeagle-cpu.so.31.0.0 libhmsbeagle-cpu.so; }; }) libtool: install: /usr/bin/install -c .libs/libhmsbeagle-cpu.lai /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu.la libtool: install: /usr/bin/install -c .libs/libhmsbeagle-cpu-sse.so.31.0.0 /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu-sse.so.31.0.0 libtool: install: (cd /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libhmsbeagle-cpu-sse.so.31.0.0 libhmsbeagle-cpu-sse.so.31 || { rm -f libhmsbeagle-cpu-sse.so.31 && ln -s libhmsbeagle-cpu-sse.so.31.0.0 libhmsbeagle-cpu-sse.so.31; }; }) libtool: install: (cd /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libhmsbeagle-cpu-sse.so.31.0.0 libhmsbeagle-cpu-sse.so || { rm -f libhmsbeagle-cpu-sse.so && ln -s libhmsbeagle-cpu-sse.so.31.0.0 libhmsbeagle-cpu-sse.so; }; }) libtool: install: /usr/bin/install -c .libs/libhmsbeagle-cpu-sse.lai /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu-sse.la libtool: install: /usr/bin/install -c .libs/libhmsbeagle-cpu.a /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu.a libtool: install: chmod 644 /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu.a libtool: install: ranlib /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu.a libtool: install: /usr/bin/install -c .libs/libhmsbeagle-cpu-sse.a /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu-sse.a libtool: install: chmod 644 /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu-sse.a libtool: install: ranlib /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu-sse.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/CPU' make[3]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/CPU' Making install in plugin make[3]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/plugin' make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/plugin' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/plugin' make[3]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/plugin' Making install in benchmark make[3]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/benchmark' make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/benchmark' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/benchmark' make[3]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/benchmark' make[3]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle' make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle' /bin/mkdir -p '/build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libhmsbeagle.la '/build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libhmsbeagle.so.1.3.2 /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle.so.1.3.2 libtool: install: (cd /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libhmsbeagle.so.1.3.2 libhmsbeagle.so.1 || { rm -f libhmsbeagle.so.1 && ln -s libhmsbeagle.so.1.3.2 libhmsbeagle.so.1; }; }) libtool: install: (cd /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libhmsbeagle.so.1.3.2 libhmsbeagle.so || { rm -f libhmsbeagle.so && ln -s libhmsbeagle.so.1.3.2 libhmsbeagle.so; }; }) libtool: install: /usr/bin/install -c .libs/libhmsbeagle.lai /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle.la libtool: install: /usr/bin/install -c .libs/libhmsbeagle.a /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle.a libtool: install: chmod 644 /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle.a libtool: install: ranlib /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/include/libhmsbeagle-1/libhmsbeagle' /usr/bin/install -c -m 644 beagle.h platform.h '/build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/include/libhmsbeagle-1/libhmsbeagle' make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle' make[3]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle' make[2]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle' Making install in libhmsbeagle/JNI make[2]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/JNI' make[3]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/JNI' /bin/mkdir -p '/build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../../libtool --mode=install /usr/bin/install -c libhmsbeagle-jni.la '/build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: warning: relinking 'libhmsbeagle-jni.la' libtool: install: (cd /build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/JNI; /bin/bash "/build/libhmsbeagle-3.1.2+dfsg/libtool" --tag CXX --mode=relink g++ -O3 -std=c++11 -g -O2 -ffile-prefix-map=/build/libhmsbeagle-3.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -module -avoid-version -Wl,-z,relro -Wl,-z,now -o libhmsbeagle-jni.la -rpath /usr/lib/x86_64-linux-gnu libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.lo -L../../libhmsbeagle -lhmsbeagle -ldl -inst-prefix-dir /build/libhmsbeagle-3.1.2+dfsg/debian/tmp) libtool: relink: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o .libs/libhmsbeagle_jni_la-beagle_BeagleJNIWrapper.o -L../../libhmsbeagle -L/build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu -L/usr/lib/x86_64-linux-gnu -lhmsbeagle -ldl -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -O3 -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libhmsbeagle-jni.so -o .libs/libhmsbeagle-jni.so libtool: install: /usr/bin/install -c .libs/libhmsbeagle-jni.soT /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-jni.so libtool: install: /usr/bin/install -c .libs/libhmsbeagle-jni.lai /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-jni.la libtool: install: /usr/bin/install -c .libs/libhmsbeagle-jni.a /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-jni.a libtool: install: chmod 644 /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-jni.a libtool: install: ranlib /build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-jni.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/JNI' make[2]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/libhmsbeagle/JNI' Making install in examples make[2]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples' Making install in synthetictest make[3]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/synthetictest' make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/synthetictest' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/synthetictest' make[3]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/synthetictest' Making install in tinytest make[3]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/tinytest' make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/tinytest' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/tinytest' make[3]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/tinytest' Making install in oddstatetest make[3]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/oddstatetest' make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/oddstatetest' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/oddstatetest' make[3]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/oddstatetest' Making install in complextest make[3]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/complextest' make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/complextest' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/complextest' make[3]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/complextest' Making install in fourtaxon make[3]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/fourtaxon' make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/fourtaxon' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/fourtaxon' make[3]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/fourtaxon' Making install in matrixtest make[3]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/matrixtest' make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples/matrixtest' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/matrixtest' make[3]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples/matrixtest' make[3]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples' make[4]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg/examples' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples' make[3]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples' make[2]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg/examples' make[2]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg' make[3]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 hmsbeagle-1.pc '/build/libhmsbeagle-3.1.2+dfsg/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[3]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg' make[2]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg' make[1]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg' dh_install cp --reflink=auto -a debian/tmp/usr/include/libhmsbeagle-1 debian/libhmsbeagle-dev//usr/include/ install -d debian/libhmsbeagle-dev//usr/lib/x86_64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu-sse.a debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu-sse.so debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu.a debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu.so debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-opencl.so debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle.a debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle.so debian/libhmsbeagle-dev//usr/lib/x86_64-linux-gnu/ install -d debian/libhmsbeagle-dev//usr/lib/x86_64-linux-gnu/pkgconfig cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/hmsbeagle-1.pc debian/libhmsbeagle-dev//usr/lib/x86_64-linux-gnu/pkgconfig/ install -d debian/.debhelper/generated/libhmsbeagle-dev install -d debian/libhmsbeagle1v5//usr/lib/x86_64-linux-gnu cp --reflink=auto -a debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu-sse.so.31 debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu-sse.so.31.0.0 debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu.so.31 debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu.so.31.0.0 debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-jni.so debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-opencl.so.31 debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle-opencl.so.31.0.0 debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle.so.1 debian/tmp/usr/lib/x86_64-linux-gnu/libhmsbeagle.so.1.3.2 debian/libhmsbeagle1v5//usr/lib/x86_64-linux-gnu/ install -d debian/.debhelper/generated/libhmsbeagle1v5 install -d debian/.debhelper/generated/libhmsbeagle-java jh_installjavadoc debian/rules override_dh_installdocs make[1]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg' dh_installdocs install -d debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev cd './doc/html/..' && find 'html' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /build/libhmsbeagle-3.1.2+dfsg/debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev chown -R 0:0 debian/libhmsbeagle-dev/usr/share/doc chmod -R u\+rw,go=rX debian/libhmsbeagle-dev/usr/share/doc install -p -m0644 debian/README.Debian debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/README.Debian install -p -m0644 debian/copyright debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/copyright install -d debian/libhmsbeagle-dev/usr/share/doc-base/ install -p -m0644 debian/libhmsbeagle-dev.doc-base debian/libhmsbeagle-dev/usr/share/doc-base/libhmsbeagle install -d debian/libhmsbeagle1v5/usr/share/doc/libhmsbeagle1v5 install -p -m0644 debian/copyright debian/libhmsbeagle1v5/usr/share/doc/libhmsbeagle1v5/copyright install -d debian/libhmsbeagle-java/usr/share/doc/libhmsbeagle-java install -p -m0644 debian/copyright debian/libhmsbeagle-java/usr/share/doc/libhmsbeagle-java/copyright find debian/libhmsbeagle-dev -name jquery.js -delete find debian/libhmsbeagle-dev -name "*.md5" -delete make[1]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg' dh_installchangelogs install -p -m0644 debian/changelog debian/libhmsbeagle-java/usr/share/doc/libhmsbeagle-java/changelog.Debian install -p -m0644 debian/changelog debian/libhmsbeagle1v5/usr/share/doc/libhmsbeagle1v5/changelog.Debian install -p -m0644 debian/changelog debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/changelog.Debian dh_installman install -d debian/libhmsbeagle-dev/usr/share/man/man3/ install -p -m0644 ./doc/man/man3/beagle.h.3 debian/libhmsbeagle-dev/usr/share/man/man3/beagle.h.3 install -p -m0644 ./doc/man/man3/BeagleBenchmarkedResource.3 debian/libhmsbeagle-dev/usr/share/man/man3/BeagleBenchmarkedResource.3 install -p -m0644 ./doc/man/man3/BeagleBenchmarkedResourceList.3 debian/libhmsbeagle-dev/usr/share/man/man3/BeagleBenchmarkedResourceList.3 install -p -m0644 ./doc/man/man3/BeagleInstanceDetails.3 debian/libhmsbeagle-dev/usr/share/man/man3/BeagleInstanceDetails.3 install -p -m0644 ./doc/man/man3/BeagleOperation.3 debian/libhmsbeagle-dev/usr/share/man/man3/BeagleOperation.3 install -p -m0644 ./doc/man/man3/BeagleOperationByPartition.3 debian/libhmsbeagle-dev/usr/share/man/man3/BeagleOperationByPartition.3 install -p -m0644 ./doc/man/man3/BeagleResource.3 debian/libhmsbeagle-dev/usr/share/man/man3/BeagleResource.3 install -p -m0644 ./doc/man/man3/BeagleResourceList.3 debian/libhmsbeagle-dev/usr/share/man/man3/BeagleResourceList.3 man -l --recode UTF-8 ./debian/libhmsbeagle-dev/usr/share/man/man3/BeagleResourceList.3 > debian/libhmsbeagle-dev/usr/share/man/man3/BeagleResourceList.3.dh-new man -l --recode UTF-8 ./debian/libhmsbeagle-dev/usr/share/man/man3/BeagleResource.3 > debian/libhmsbeagle-dev/usr/share/man/man3/BeagleResource.3.dh-new man -l --recode UTF-8 ./debian/libhmsbeagle-dev/usr/share/man/man3/BeagleOperationByPartition.3 > debian/libhmsbeagle-dev/usr/share/man/man3/BeagleOperationByPartition.3.dh-new man -l --recode UTF-8 ./debian/libhmsbeagle-dev/usr/share/man/man3/BeagleOperation.3 > debian/libhmsbeagle-dev/usr/share/man/man3/BeagleOperation.3.dh-new man -l --recode UTF-8 ./debian/libhmsbeagle-dev/usr/share/man/man3/BeagleInstanceDetails.3 > debian/libhmsbeagle-dev/usr/share/man/man3/BeagleInstanceDetails.3.dh-new man -l --recode UTF-8 ./debian/libhmsbeagle-dev/usr/share/man/man3/BeagleBenchmarkedResourceList.3 > debian/libhmsbeagle-dev/usr/share/man/man3/BeagleBenchmarkedResourceList.3.dh-new man -l --recode UTF-8 ./debian/libhmsbeagle-dev/usr/share/man/man3/BeagleBenchmarkedResource.3 > debian/libhmsbeagle-dev/usr/share/man/man3/BeagleBenchmarkedResource.3.dh-new man -l --recode UTF-8 ./debian/libhmsbeagle-dev/usr/share/man/man3/beagle.h.3 > debian/libhmsbeagle-dev/usr/share/man/man3/beagle.h.3.dh-new mv debian/libhmsbeagle-dev/usr/share/man/man3/BeagleResource.3.dh-new debian/libhmsbeagle-dev/usr/share/man/man3/BeagleResource.3 chmod 0644 -- debian/libhmsbeagle-dev/usr/share/man/man3/BeagleResource.3 mv debian/libhmsbeagle-dev/usr/share/man/man3/BeagleResourceList.3.dh-new debian/libhmsbeagle-dev/usr/share/man/man3/BeagleResourceList.3 chmod 0644 -- debian/libhmsbeagle-dev/usr/share/man/man3/BeagleResourceList.3 mv debian/libhmsbeagle-dev/usr/share/man/man3/BeagleOperation.3.dh-new debian/libhmsbeagle-dev/usr/share/man/man3/BeagleOperation.3 chmod 0644 -- debian/libhmsbeagle-dev/usr/share/man/man3/BeagleOperation.3 mv debian/libhmsbeagle-dev/usr/share/man/man3/BeagleBenchmarkedResourceList.3.dh-new debian/libhmsbeagle-dev/usr/share/man/man3/BeagleBenchmarkedResourceList.3 chmod 0644 -- debian/libhmsbeagle-dev/usr/share/man/man3/BeagleBenchmarkedResourceList.3 mv debian/libhmsbeagle-dev/usr/share/man/man3/BeagleOperationByPartition.3.dh-new debian/libhmsbeagle-dev/usr/share/man/man3/BeagleOperationByPartition.3 chmod 0644 -- debian/libhmsbeagle-dev/usr/share/man/man3/BeagleOperationByPartition.3 mv debian/libhmsbeagle-dev/usr/share/man/man3/BeagleInstanceDetails.3.dh-new debian/libhmsbeagle-dev/usr/share/man/man3/BeagleInstanceDetails.3 chmod 0644 -- debian/libhmsbeagle-dev/usr/share/man/man3/BeagleInstanceDetails.3 mv debian/libhmsbeagle-dev/usr/share/man/man3/beagle.h.3.dh-new debian/libhmsbeagle-dev/usr/share/man/man3/beagle.h.3 chmod 0644 -- debian/libhmsbeagle-dev/usr/share/man/man3/beagle.h.3 mv debian/libhmsbeagle-dev/usr/share/man/man3/BeagleBenchmarkedResource.3.dh-new debian/libhmsbeagle-dev/usr/share/man/man3/BeagleBenchmarkedResource.3 chmod 0644 -- debian/libhmsbeagle-dev/usr/share/man/man3/BeagleBenchmarkedResource.3 dh_perl rm -f debian/libhmsbeagle-dev.debhelper.log debian/libhmsbeagle-java.debhelper.log debian/libhmsbeagle1v5.debhelper.log debian/rules override_dh_link make[1]: Entering directory '/build/libhmsbeagle-3.1.2+dfsg' dh_link rm -f debian/libhmsbeagle-dev/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu-sse.so ln -s libhmsbeagle-cpu-sse.so.31.0.0 debian/libhmsbeagle-dev/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu-sse.so rm -f debian/libhmsbeagle-dev/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu.so ln -s libhmsbeagle-cpu.so.31.0.0 debian/libhmsbeagle-dev/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu.so rm -f debian/libhmsbeagle-dev/usr/lib/x86_64-linux-gnu/libhmsbeagle-opencl.so ln -s libhmsbeagle-opencl.so.31.0.0 debian/libhmsbeagle-dev/usr/lib/x86_64-linux-gnu/libhmsbeagle-opencl.so rm -f debian/libhmsbeagle-dev/usr/lib/x86_64-linux-gnu/libhmsbeagle.so ln -s libhmsbeagle.so.1.3.2 debian/libhmsbeagle-dev/usr/lib/x86_64-linux-gnu/libhmsbeagle.so rm -f debian/libhmsbeagle-dev/usr/include/libhmsbeagle ln -s libhmsbeagle-1 debian/libhmsbeagle-dev/usr/include/libhmsbeagle rm -f debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu-sse.so.31 ln -s libhmsbeagle-cpu-sse.so.31.0.0 debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu-sse.so.31 rm -f debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu.so.31 ln -s libhmsbeagle-cpu.so.31.0.0 debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu.so.31 rm -f debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-opencl.so.31 ln -s libhmsbeagle-opencl.so.31.0.0 debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-opencl.so.31 rm -f debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle.so.1 ln -s libhmsbeagle.so.1.3.2 debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle.so.1 install -d debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/jni rm -f debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/jni/libhmsbeagle-jni.so ln -s ../libhmsbeagle-jni.so debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/jni/libhmsbeagle-jni.so opencllib=`find debian/libhmsbeagle1v5/usr/lib -name "libhmsbeagle-opencl.so.*" | sed 's?debian/libhmsbeagle1v5/??' | grep -v '\.0$'` ; \ dh_link -plibhmsbeagle-dev ${opencllib} usr/lib/x86_64-linux-gnu/libhmsbeagle-opencl.so rm -f debian/libhmsbeagle-dev/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu-sse.so ln -s libhmsbeagle-cpu-sse.so.31.0.0 debian/libhmsbeagle-dev/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu-sse.so rm -f debian/libhmsbeagle-dev/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu.so ln -s libhmsbeagle-cpu.so.31.0.0 debian/libhmsbeagle-dev/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu.so rm -f debian/libhmsbeagle-dev/usr/lib/x86_64-linux-gnu/libhmsbeagle-opencl.so ln -s libhmsbeagle-opencl.so.31.0.0 debian/libhmsbeagle-dev/usr/lib/x86_64-linux-gnu/libhmsbeagle-opencl.so rm -f debian/libhmsbeagle-dev/usr/lib/x86_64-linux-gnu/libhmsbeagle.so ln -s libhmsbeagle.so.1.3.2 debian/libhmsbeagle-dev/usr/lib/x86_64-linux-gnu/libhmsbeagle.so rm -f debian/libhmsbeagle-dev/usr/include/libhmsbeagle ln -s libhmsbeagle-1 debian/libhmsbeagle-dev/usr/include/libhmsbeagle rm -f debian/libhmsbeagle-dev/usr/lib/x86_64-linux-gnu/libhmsbeagle-opencl.so ln -s libhmsbeagle-opencl.so.31 debian/libhmsbeagle-dev/usr/lib/x86_64-linux-gnu/libhmsbeagle-opencl.so rm -f debian/libhmsbeagle-dev/usr/include/libhmsbeagle ln -s libhmsbeagle-1 debian/libhmsbeagle-dev/usr/include/libhmsbeagle make[1]: Leaving directory '/build/libhmsbeagle-3.1.2+dfsg' jh_installlibs install -d debian/libhmsbeagle-java/usr/share/java install -p -m0644 ./lib/beagle.jar debian/libhmsbeagle-java/usr/share/java/beagle-3.1.2.jar rm -f debian/libhmsbeagle-java/usr/share/java/beagle.jar ln -s beagle-3.1.2.jar debian/libhmsbeagle-java/usr/share/java/beagle.jar jh_classpath jh_manifest find debian/libhmsbeagle-dev -name '*.jar' find debian/libhmsbeagle1v5 -name '*.jar' find debian/libhmsbeagle-java -name '*.jar' Found symlink usr/share/java/beagle.jar Found usr/share/java/beagle-3.1.2.jar Reading manifest from debian/libhmsbeagle-java/usr/share/java/beagle-3.1.2.jar No update of debian/libhmsbeagle-java/usr/share/java/beagle-3.1.2.jar required. jh_depends Searching /build/libhmsbeagle-3.1.2+dfsg/debian/libhmsbeagle-dev for libhmsbeagle-dev Searching Found Jars: Found Debs: Adding substvars: java:Depends= java:Recommends= Searching /build/libhmsbeagle-3.1.2+dfsg/debian/libhmsbeagle1v5 for libhmsbeagle1v5 Searching Found Jars: Found Debs: Adding substvars: java:Depends= java:Recommends= Searching /build/libhmsbeagle-3.1.2+dfsg/debian/libhmsbeagle-java for libhmsbeagle-java Searching /build/libhmsbeagle-3.1.2+dfsg/debian/libhmsbeagle-java/usr/share/java/beagle-3.1.2.jar Found Jars: Found Debs: Adding substvars: java:Depends= java:Recommends= dh_strip_nondeterminism Using 1558901197 as canonical time Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/tab_s.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/tab_h.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/tab_b.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/tab_a.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/sync_on.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/sync_off.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/struct_beagle_resource_list__coll__graph.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/struct_beagle_benchmarked_resource_list__coll__graph.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/splitbar.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/open.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/nav_h.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/nav_g.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/nav_f.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/graph_legend.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/folderopen.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/folderclosed.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/doxygen.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/doc.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/closed.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/beagle_8h__incl.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/beagle-dox.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/bdwn.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/bc_s.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/search/search_r.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/search/search_m.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/search/search_l.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/search/mag_sel.png using File::StripNondeterminism::handlers::png Normalizing debian/libhmsbeagle-dev/usr/share/doc/libhmsbeagle-dev/html/search/close.png using File::StripNondeterminism::handlers::png Using 1558901197 as canonical time Normalizing debian/libhmsbeagle-java/usr/share/java/beagle-3.1.2.jar using File::StripNondeterminism::handlers::jar dh_compress cd debian/libhmsbeagle-dev cd debian/libhmsbeagle1v5 cd debian/libhmsbeagle-java chmod a-x usr/share/doc/libhmsbeagle1v5/changelog.Debian chmod a-x usr/share/doc/libhmsbeagle-java/changelog.Debian gzip -9nf usr/share/doc/libhmsbeagle1v5/changelog.Debian gzip -9nf usr/share/doc/libhmsbeagle-java/changelog.Debian cd '/build/libhmsbeagle-3.1.2+dfsg' cd '/build/libhmsbeagle-3.1.2+dfsg' chmod a-x usr/share/doc/libhmsbeagle-dev/changelog.Debian usr/share/man/man3/BeagleBenchmarkedResource.3 usr/share/man/man3/BeagleBenchmarkedResourceList.3 usr/share/man/man3/BeagleInstanceDetails.3 usr/share/man/man3/BeagleOperation.3 usr/share/man/man3/BeagleOperationByPartition.3 usr/share/man/man3/BeagleResource.3 usr/share/man/man3/BeagleResourceList.3 usr/share/man/man3/beagle.h.3 gzip -9nf usr/share/doc/libhmsbeagle-dev/changelog.Debian usr/share/man/man3/BeagleBenchmarkedResource.3 usr/share/man/man3/BeagleBenchmarkedResourceList.3 usr/share/man/man3/BeagleInstanceDetails.3 usr/share/man/man3/BeagleOperation.3 usr/share/man/man3/BeagleOperationByPartition.3 usr/share/man/man3/BeagleResource.3 usr/share/man/man3/BeagleResourceList.3 usr/share/man/man3/beagle.h.3 cd '/build/libhmsbeagle-3.1.2+dfsg' dh_fixperms find debian/libhmsbeagle-dev -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libhmsbeagle1v5 -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libhmsbeagle-java -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libhmsbeagle-java ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhmsbeagle1v5 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhmsbeagle-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libhmsbeagle-java/usr/share/doc -type f -a -true -a ! -regex 'debian/libhmsbeagle-java/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhmsbeagle1v5/usr/share/doc -type f -a -true -a ! -regex 'debian/libhmsbeagle1v5/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhmsbeagle-java/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhmsbeagle1v5/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhmsbeagle-java -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhmsbeagle-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libhmsbeagle-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhmsbeagle1v5 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhmsbeagle1v5/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libhmsbeagle-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libhmsbeagle-dev/usr/share/man debian/libhmsbeagle-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhmsbeagle-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libhmsbeagle-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing dh_missing: usr/lib/x86_64-linux-gnu/libhmsbeagle-jni.a exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/x86_64-linux-gnu/libhmsbeagle-jni.la exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/x86_64-linux-gnu/libhmsbeagle.la exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu-sse.la exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu.la exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/x86_64-linux-gnu/libhmsbeagle-opencl.a exists in debian/tmp but is not installed to anywhere dh_missing: usr/lib/x86_64-linux-gnu/libhmsbeagle-opencl.la exists in debian/tmp but is not installed to anywhere The following debhelper tools have reported what they installed (with files per package) * dh_install: libhmsbeagle-dev (9), libhmsbeagle-java (0), libhmsbeagle1v5 (9) * dh_installdocs: libhmsbeagle-dev (1), libhmsbeagle-java (0), libhmsbeagle1v5 (0) * dh_installman: libhmsbeagle-dev (8), libhmsbeagle-java (0), libhmsbeagle1v5 (0) If the missing files are installed by another tool, please file a bug against it. When filing the report, if the tool is not part of debhelper itself, please reference the "Logging helpers and dh_missing" section from the "PROGRAMMING" guide for debhelper (10.6.3+). (in the debhelper package: /usr/share/doc/debhelper/PROGRAMMING.gz) Be sure to test with dpkg-buildpackage -A/-B as the results may vary when only a subset is built For a short-term work-around: Add the files to debian/not-installed dh_dwz install -d debian/libhmsbeagle1v5/usr/lib/debug/.dwz/x86_64-linux-gnu dwz -q -mdebian/libhmsbeagle1v5/usr/lib/debug/.dwz/x86_64-linux-gnu/libhmsbeagle1v5.debug -M/usr/lib/debug/.dwz/x86_64-linux-gnu/libhmsbeagle1v5.debug -- debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu-sse.so.31.0.0 debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu.so.31.0.0 debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-jni.so debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-opencl.so.31.0.0 debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle.so.1.3.2 objcopy --compress-debug-sections debian/libhmsbeagle1v5/usr/lib/debug/.dwz/x86_64-linux-gnu/libhmsbeagle1v5.debug dh_strip install -d debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.build-id/58 objcopy --only-keep-debug --compress-debug-sections debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle.so.1.3.2 debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.build-id/58/0862884128ed051feb39111404983dad08c63a.debug strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libhmsbeagle-dev/usr/lib/x86_64-linux-gnu/libhmsbeagle.a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libhmsbeagle-dev/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu.a strip --strip-debug --remove-section=.comment --remove-section=.note --enable-deterministic-archives debian/libhmsbeagle-dev/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu-sse.a chmod 0644 -- debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.build-id/58/0862884128ed051feb39111404983dad08c63a.debug chown 0:0 -- debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.build-id/58/0862884128ed051feb39111404983dad08c63a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle.so.1.3.2 objcopy --add-gnu-debuglink debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.build-id/58/0862884128ed051feb39111404983dad08c63a.debug debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle.so.1.3.2 install -d debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.build-id/c2 objcopy --only-keep-debug --compress-debug-sections debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-opencl.so.31.0.0 debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.build-id/c2/694421d20ffc7f363749a9d79e54df17b1105a.debug chmod 0644 -- debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.build-id/c2/694421d20ffc7f363749a9d79e54df17b1105a.debug chown 0:0 -- debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.build-id/c2/694421d20ffc7f363749a9d79e54df17b1105a.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-opencl.so.31.0.0 objcopy --add-gnu-debuglink debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.build-id/c2/694421d20ffc7f363749a9d79e54df17b1105a.debug debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-opencl.so.31.0.0 install -d debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.build-id/b9 objcopy --only-keep-debug --compress-debug-sections debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-jni.so debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.build-id/b9/914eb0654dbb3909e16789dbfa19ec5fcef220.debug chmod 0644 -- debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.build-id/b9/914eb0654dbb3909e16789dbfa19ec5fcef220.debug chown 0:0 -- debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.build-id/b9/914eb0654dbb3909e16789dbfa19ec5fcef220.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-jni.so objcopy --add-gnu-debuglink debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.build-id/b9/914eb0654dbb3909e16789dbfa19ec5fcef220.debug debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-jni.so install -d debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.build-id/9d objcopy --only-keep-debug --compress-debug-sections debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu.so.31.0.0 debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.build-id/9d/7beb13fe00526d3b8d459f92b9c7e0c6fbbba4.debug chmod 0644 -- debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.build-id/9d/7beb13fe00526d3b8d459f92b9c7e0c6fbbba4.debug chown 0:0 -- debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.build-id/9d/7beb13fe00526d3b8d459f92b9c7e0c6fbbba4.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu.so.31.0.0 objcopy --add-gnu-debuglink debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.build-id/9d/7beb13fe00526d3b8d459f92b9c7e0c6fbbba4.debug debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu.so.31.0.0 install -d debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.build-id/82 objcopy --only-keep-debug --compress-debug-sections debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu-sse.so.31.0.0 debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.build-id/82/a5a40cd91430f393555d89bfce314518dd5cb5.debug chmod 0644 -- debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.build-id/82/a5a40cd91430f393555d89bfce314518dd5cb5.debug chown 0:0 -- debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.build-id/82/a5a40cd91430f393555d89bfce314518dd5cb5.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu-sse.so.31.0.0 objcopy --add-gnu-debuglink debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.build-id/82/a5a40cd91430f393555d89bfce314518dd5cb5.debug debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu-sse.so.31.0.0 install -d debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/libhmsbeagle1v5/usr/lib/debug/.dwz/x86_64-linux-gnu debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/libhmsbeagle1v5/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/libhmsbeagle1v5/usr/lib/debug install -d debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/share/doc ln -s libhmsbeagle1v5 debian/.debhelper/libhmsbeagle1v5/dbgsym-root/usr/share/doc/libhmsbeagle1v5-dbgsym dh_makeshlibs rm -f debian/libhmsbeagle-dev/DEBIAN/shlibs rm -f debian/libhmsbeagle1v5/DEBIAN/shlibs install -d debian/libhmsbeagle1v5/DEBIAN echo "libhmsbeagle-cpu-sse 31 libhmsbeagle1v5 (>= 3.1.2+dfsg)" >> debian/libhmsbeagle1v5/DEBIAN/shlibs echo "libhmsbeagle-cpu 31 libhmsbeagle1v5 (>= 3.1.2+dfsg)" >> debian/libhmsbeagle1v5/DEBIAN/shlibs echo "libhmsbeagle-opencl 31 libhmsbeagle1v5 (>= 3.1.2+dfsg)" >> debian/libhmsbeagle1v5/DEBIAN/shlibs echo "libhmsbeagle 1 libhmsbeagle1v5 (>= 3.1.2+dfsg)" >> debian/libhmsbeagle1v5/DEBIAN/shlibs chmod 0644 -- debian/libhmsbeagle1v5/DEBIAN/shlibs chown 0:0 -- debian/libhmsbeagle1v5/DEBIAN/shlibs mv debian/.debhelper/generated/libhmsbeagle1v5/triggers.new debian/.debhelper/generated/libhmsbeagle1v5/triggers rm -f debian/libhmsbeagle-java/DEBIAN/shlibs dh_shlibdeps dpkg-shlibdeps -Tdebian/libhmsbeagle1v5.substvars debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu-sse.so.31.0.0 debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-cpu.so.31.0.0 debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-jni.so debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle-opencl.so.31.0.0 debian/libhmsbeagle1v5/usr/lib/x86_64-linux-gnu/libhmsbeagle.so.1.3.2 dh_installdeb install -d debian/libhmsbeagle-dev/DEBIAN install -p -m0644 debian/.debhelper/generated/libhmsbeagle1v5/triggers debian/libhmsbeagle1v5/DEBIAN/triggers install -d debian/libhmsbeagle-java/DEBIAN dh_gencontrol echo misc:Depends= >> debian/libhmsbeagle-dev.substvars echo misc:Pre-Depends= >> debian/libhmsbeagle-dev.substvars dpkg-gencontrol -plibhmsbeagle-dev -ldebian/changelog -Tdebian/libhmsbeagle-dev.substvars -Pdebian/libhmsbeagle-dev -UMulti-Arch echo misc:Depends= >> debian/libhmsbeagle-java.substvars echo misc:Pre-Depends= >> debian/libhmsbeagle-java.substvars dpkg-gencontrol -plibhmsbeagle-java -ldebian/changelog -Tdebian/libhmsbeagle-java.substvars -Pdebian/libhmsbeagle-java -UMulti-Arch echo misc:Depends= >> debian/libhmsbeagle1v5.substvars echo misc:Pre-Depends= >> debian/libhmsbeagle1v5.substvars install -d debian/.debhelper/libhmsbeagle1v5/dbgsym-root/DEBIAN dpkg-gencontrol -plibhmsbeagle1v5 -ldebian/changelog -Tdebian/libhmsbeagle1v5.substvars -Pdebian/.debhelper/libhmsbeagle1v5/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=libhmsbeagle1v5-dbgsym "-DDepends=libhmsbeagle1v5 (= \${binary:Version})" "-DDescription=debug symbols for libhmsbeagle1v5" "-DBuild-Ids=580862884128ed051feb39111404983dad08c63a 82a5a40cd91430f393555d89bfce314518dd5cb5 9d7beb13fe00526d3b8d459f92b9c7e0c6fbbba4 b9914eb0654dbb3909e16789dbfa19ec5fcef220 c2694421d20ffc7f363749a9d79e54df17b1105a" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/libhmsbeagle1v5/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/libhmsbeagle1v5/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibhmsbeagle1v5 -ldebian/changelog -Tdebian/libhmsbeagle1v5.substvars -Pdebian/libhmsbeagle1v5 -UMulti-Arch dpkg-gencontrol: warning: Depends field of package libhmsbeagle-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package libhmsbeagle-java: substitution variable ${shlibs:Depends} used, but is not defined chmod 0644 -- debian/libhmsbeagle-java/DEBIAN/control chown 0:0 -- debian/libhmsbeagle-java/DEBIAN/control chmod 0644 -- debian/libhmsbeagle-dev/DEBIAN/control chown 0:0 -- debian/libhmsbeagle-dev/DEBIAN/control chmod 0644 -- debian/libhmsbeagle1v5/DEBIAN/control chown 0:0 -- debian/libhmsbeagle1v5/DEBIAN/control dh_md5sums cd debian/libhmsbeagle-java >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libhmsbeagle-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libhmsbeagle1v5 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libhmsbeagle-java/DEBIAN/md5sums chown 0:0 -- debian/libhmsbeagle-java/DEBIAN/md5sums chmod 0644 -- debian/libhmsbeagle-dev/DEBIAN/md5sums chown 0:0 -- debian/libhmsbeagle-dev/DEBIAN/md5sums chmod 0644 -- debian/libhmsbeagle1v5/DEBIAN/md5sums chown 0:0 -- debian/libhmsbeagle1v5/DEBIAN/md5sums cd debian/.debhelper/libhmsbeagle1v5/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libhmsbeagle1v5/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/libhmsbeagle1v5/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --build debian/libhmsbeagle-dev .. dpkg-deb --build debian/libhmsbeagle1v5 .. dpkg-deb --build debian/.debhelper/libhmsbeagle1v5/dbgsym-root .. dpkg-deb --build debian/libhmsbeagle-java .. dpkg-deb: building package 'libhmsbeagle-dev' in '../libhmsbeagle-dev_3.1.2+dfsg-6_amd64.deb'. dpkg-deb: building package 'libhmsbeagle1v5-dbgsym' in '../libhmsbeagle1v5-dbgsym_3.1.2+dfsg-6_amd64.deb'. dpkg-deb: building package 'libhmsbeagle1v5' in '../libhmsbeagle1v5_3.1.2+dfsg-6_amd64.deb'. dpkg-deb: building package 'libhmsbeagle-java' in '../libhmsbeagle-java_3.1.2+dfsg-6_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libhmsbeagle_3.1.2+dfsg-6_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4176637 and its subdirectories I: Current time: Sat Jan 7 17:14:26 -12 2023 I: pbuilder-time-stamp: 1673154866 Sun Dec 5 22:51:21 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Sun Dec 5 22:51:21 UTC 2021 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Sun Dec 5 23:01:27 UTC 2021 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Sun Dec 5 23:01:27 UTC 2021 I: libhmsbeagle_3.1.2+dfsg-6_amd64.changes: Format: 1.8 Date: Sun, 26 May 2019 22:06:37 +0200 Source: libhmsbeagle Binary: libhmsbeagle-dev libhmsbeagle-java libhmsbeagle1v5 libhmsbeagle1v5-dbgsym Architecture: amd64 Version: 3.1.2+dfsg-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Dylan Aïssi Description: libhmsbeagle-dev - High-performance lib for Bayesian and Maximum Likelihood phylogen libhmsbeagle-java - High-performance lib for Bayesian and Maximum Likelihood phylogen libhmsbeagle1v5 - High-performance lib for Bayesian and Maximum Likelihood phylogen Closes: 929560 Changes: libhmsbeagle (3.1.2+dfsg-6) unstable; urgency=medium . * Team upload. * Replace DEB_HOST_GNU_TYPE by DEB_HOST_MULTIARCH Closes: #929560 Checksums-Sha1: 71cd7a7306f84a0e47f63a8188f24dc5871976f5 249392 libhmsbeagle-dev_3.1.2+dfsg-6_amd64.deb 64065d46e09e5b74d98c876b17cd7e9dd05c6394 28464 libhmsbeagle-java_3.1.2+dfsg-6_amd64.deb ff9ee2055c5d0e532af517835bbf5df1a09e37c3 1782540 libhmsbeagle1v5-dbgsym_3.1.2+dfsg-6_amd64.deb cfa41c31b8198ba4056f843301d74903eb31a275 195504 libhmsbeagle1v5_3.1.2+dfsg-6_amd64.deb ea15d16fc0dcf6810f8ca965107fbfa3d022ad41 12446 libhmsbeagle_3.1.2+dfsg-6_amd64.buildinfo Checksums-Sha256: 823102463aa0859c9c9786039952467bb46be5c20e923acc31c692895c47d258 249392 libhmsbeagle-dev_3.1.2+dfsg-6_amd64.deb 714e554b454df6bbbdd7d4b3cb6c48149205f2ceae88406fc78991736f4fdfa7 28464 libhmsbeagle-java_3.1.2+dfsg-6_amd64.deb 1c93d3b58a99ec1c975bdbac8158e1b6f197b4c04c44c10d603de941afd7c080 1782540 libhmsbeagle1v5-dbgsym_3.1.2+dfsg-6_amd64.deb 420223ccb61a86b659e2e459f622023c4ef54eccc03adc2348d749dbd4c5550c 195504 libhmsbeagle1v5_3.1.2+dfsg-6_amd64.deb 8727dcf3d31147967cd73cd34cdc74e41ca2f40869f6294297f8f69df8b3284b 12446 libhmsbeagle_3.1.2+dfsg-6_amd64.buildinfo Files: 2502aa30319831934a94746c3a460ed5 249392 libdevel optional libhmsbeagle-dev_3.1.2+dfsg-6_amd64.deb d67a59a24275ad2692fed1b9055867a9 28464 java optional libhmsbeagle-java_3.1.2+dfsg-6_amd64.deb c1a5ba5bfa09a908af16089e787cfa2f 1782540 debug optional libhmsbeagle1v5-dbgsym_3.1.2+dfsg-6_amd64.deb 882a665612d2ea78dea8899e65e15710 195504 libs optional libhmsbeagle1v5_3.1.2+dfsg-6_amd64.deb f4806f3a77d693c79dcd83c89a28587c 12446 libs optional libhmsbeagle_3.1.2+dfsg-6_amd64.buildinfo Sun Dec 5 23:01:29 UTC 2021 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.LfKs0yIA0S/libhmsbeagle_3.1.2+dfsg-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.LfKs0yIA0S/libhmsbeagle_3.1.2+dfsg-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.LfKs0yIA0S/libhmsbeagle_3.1.2+dfsg-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.LfKs0yIA0S/b1/libhmsbeagle_3.1.2+dfsg-6_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.LfKs0yIA0S/b2/libhmsbeagle_3.1.2+dfsg-6_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.485s) 0.485s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.066s) 0.065s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Sun Dec 5 23:01:30 UTC 2021 I: found no differences in the changes files, and a .buildinfo file also exists. Sun Dec 5 23:01:30 UTC 2021 I: libhmsbeagle from buster built successfully and reproducibly on amd64. Sun Dec 5 23:01:32 UTC 2021 I: Submitting .buildinfo files to external archives: Sun Dec 5 23:01:32 UTC 2021 I: Submitting 16K b1/libhmsbeagle_3.1.2+dfsg-6_amd64.buildinfo.asc Sun Dec 5 23:01:33 UTC 2021 I: Submitting 16K b2/libhmsbeagle_3.1.2+dfsg-6_amd64.buildinfo.asc Sun Dec 5 23:01:34 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Dec 5 23:01:34 UTC 2021 I: Done submitting .buildinfo files. Sun Dec 5 23:01:34 UTC 2021 I: Removing signed libhmsbeagle_3.1.2+dfsg-6_amd64.buildinfo.asc files: removed './b1/libhmsbeagle_3.1.2+dfsg-6_amd64.buildinfo.asc' removed './b2/libhmsbeagle_3.1.2+dfsg-6_amd64.buildinfo.asc'