Fri Dec 11 00:01:05 UTC 2020 I: starting to build libgenome/buster/amd64 on jenkins on '2020-12-11 00:00' Fri Dec 11 00:01:05 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_5/36342/console.log Fri Dec 11 00:01:05 UTC 2020 I: Downloading source for buster/libgenome=1.3.11+svn20110227.4616-2 --2020-12-11 00:01:05-- http://deb.debian.org/debian/pool/main/libg/libgenome/libgenome_1.3.11+svn20110227.4616-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2132 (2.1K) Saving to: ‘libgenome_1.3.11+svn20110227.4616-2.dsc’ 0K .. 100% 176M=0s 2020-12-11 00:01:05 (176 MB/s) - ‘libgenome_1.3.11+svn20110227.4616-2.dsc’ saved [2132/2132] Fri Dec 11 00:01:05 UTC 2020 I: libgenome_1.3.11+svn20110227.4616-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libgenome Binary: libgenome-dev, libgenome0 Architecture: any Version: 1.3.11+svn20110227.4616-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://sourceforge.net/projects/libgenome/ Standards-Version: 4.1.5 Vcs-Browser: https://salsa.debian.org/med-team/libgenome Vcs-Git: https://salsa.debian.org/med-team/libgenome.git Build-Depends: debhelper (>= 11~), d-shlibs (>= 0.61) Package-List: libgenome-dev deb libdevel optional arch=any libgenome0 deb libs optional arch=any Checksums-Sha1: ff883500ecf525a078e542ba2eacf7918f7a02f8 81148 libgenome_1.3.11+svn20110227.4616.orig.tar.xz 9799512d370bcd335d29558f685f557abe364775 10304 libgenome_1.3.11+svn20110227.4616-2.debian.tar.xz Checksums-Sha256: a2ca77c2a4e9c6239d9cc2fd84b84ffa75444283e3c3d34f8e724525b6a1b677 81148 libgenome_1.3.11+svn20110227.4616.orig.tar.xz 1b2b9cd052802604449bc5898caf90d3bb0606ef837d0385b2cfe4f21f9ba94d 10304 libgenome_1.3.11+svn20110227.4616-2.debian.tar.xz Files: 505900cdacc864d2a52847ff47b8ae37 81148 libgenome_1.3.11+svn20110227.4616.orig.tar.xz c6ae492c8d7d746704765c1dee7a4a61 10304 libgenome_1.3.11+svn20110227.4616-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEJeP/LX9Gnb59DU5Qr8/sjmac4cIFAltxoBUACgkQr8/sjmac 4cJ30Q//bMzzTOci4UuK+Pf7ta/C7USR25nsdx0dJcSMA/lZa3ykYspNHsVEaQ1Q 9fJzohWsAAgvNShgVbnZ/2/D0qJpeJsPK8EbtrKC89HD9aBu/c5Z4pHmN66XXd1O 6SdDHA0PHDMLiww1TlEoN6FMb7xLVMDKYsj0spj2HmCnPSYjpcVz0YRvY7QvJ7Jp zhn6OAj2obvaDe9TyyC+fz+c5xQNdIgjaDc576tSkzjo/wNudZ7MMlml43sZ2KBg /VWVbzJs2KtB7qLQEDsEqOFvRbb2k6M8IHfVK8YtLxbAuAtE+Dg3z53s5np1SzhI kEOYQi9iUS8GD4ZUxx8XgooEcASzoaNI5I8ighHnaU1w+STMEDXoTIwOuz4gJCEM F7qBn/yF1dUfcqTJnJyxXtXwn+5lqNRCnR3bmsRADkTyItTphAvNi3cRxIsu2Y48 G+gNtgr/4vJSA21m5hIc8UhHnJgXZWsa7Cg8qUjOCl46EUtmL0jEobjX0tZqg8RK cjyYZdK94mKf9MLOXL+TdZfSTpu+/bwwYN1B2FkGX7CqGHXbuI/wZAHmiQWTQChf r9KrV50/mncWi1T1SkPNkXlbOQxl9XGDnQ4etQw2HNT+FnqNh5xqqM0A5bQqeG+Q laQmtvWgxtsUmRoXlxvDwFWADpGh7cFlB4sw5Ii650yEKjVavH4= =HdlD -----END PGP SIGNATURE----- Fri Dec 11 00:01:05 UTC 2020 I: Checking whether the package is not for us Fri Dec 11 00:01:05 UTC 2020 I: Starting 1st build on remote node ionos11-amd64.debian.net. Fri Dec 11 00:01:05 UTC 2020 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Fri Dec 11 00:04:50 UTC 2020 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 10 12:01:08 -12 2020 I: pbuilder-time-stamp: 1607644868 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libgenome_1.3.11+svn20110227.4616-2.dsc] I: copying [./libgenome_1.3.11+svn20110227.4616.orig.tar.xz] I: copying [./libgenome_1.3.11+svn20110227.4616-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Aug 13 03:13:25 2018 -12 gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libgenome_1.3.11+svn20110227.4616-2.dsc dpkg-source: info: extracting libgenome in libgenome-1.3.11+svn20110227.4616 dpkg-source: info: unpacking libgenome_1.3.11+svn20110227.4616.orig.tar.xz dpkg-source: info: unpacking libgenome_1.3.11+svn20110227.4616-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc-6.1.patch dpkg-source: info: applying drop-version-number.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/49550/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='f7a98aacb413425aa208b85180f52b32' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='49550' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.PvaczJsP28/pbuilderrc_PrH8 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.PvaczJsP28/b1 --logfile b1/build.log libgenome_1.3.11+svn20110227.4616-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 4.19.0-13-amd64 #1 SMP Debian 4.19.160-2 (2020-11-28) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Dec 6 20:24 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/49550/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), d-shlibs (>= 0.61) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs (>= 0.61); however: Package d-shlibs is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 34 newly installed, 0 to remove and 0 not upgraded. Need to get 19.0 MB of archives. After unpacking 69.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u1 [242 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u1 [117 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u1 [66.4 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 d-shlibs all 0.84 [17.2 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u2 [1258 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u1 [689 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Fetched 19.0 MB in 1s (14.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u1_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u1_amd64.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../11-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../17-d-shlibs_0.84_all.deb ... Unpacking d-shlibs (0.84) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../23-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.12-3_amd64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../25-libglib2.0-0_2.58.3-2+deb10u2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-2+deb10u2) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../26-libicu63_63.1-6+deb10u1_amd64.deb ... Unpacking libicu63:amd64 (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../27-libxml2_2.9.4+dfsg1-7+deb10u1_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+deb10u1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../28-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../29-libncurses6_6.1+20181013-2+deb10u2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Selecting previously unselected package gettext. Preparing to unpack .../30-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../31-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../32-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../33-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u1) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u2) ... No schema files found: doing nothing. Setting up libmagic1:amd64 (1:5.35-4+deb10u1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u1) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up d-shlibs (0.84) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/libgenome-1.3.11+svn20110227.4616/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package libgenome dpkg-buildpackage: info: source version 1.3.11+svn20110227.4616-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Graham Inggs dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:61: warning: AM_INIT_AUTOMAKE: two- and three-arguments forms are deprecated. For more info, see: configure.ac:61: https://www.gnu.org/software/automake/manual/automake.html#Modernize-AM_005fINIT_005fAUTOMAKE-invocation configure.ac:68: installing 'config/compile' configure.ac:8: installing 'config/config.guess' configure.ac:8: installing 'config/config.sub' configure.ac:61: installing 'config/install-sh' configure.ac:61: installing 'config/missing' Makefile.am: installing './INSTALL' Makefile.am: installing './COPYING' using GNU General Public License v3 file Makefile.am: Consider adding the COPYING file to the version control system Makefile.am: for your code, to avoid questions about which license your project uses libGenome/Makefile.am:44: warning: 'INCLUDES' is the old name for 'AM_CPPFLAGS' (or '*_CPPFLAGS') libGenome/Makefile.am: installing 'config/depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes checking dependency style of g++... none checking how to print strings... printf checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... g++ -E checking for ld used by g++... /usr/bin/ld -m elf_x86_64 checking if the linker (/usr/bin/ld -m elf_x86_64) is GNU ld... yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking for g++ option to produce PIC... -fPIC -DPIC checking if g++ PIC flag -fPIC -DPIC works... yes checking if g++ static flag -static works... yes checking if g++ supports -c -o file.o... yes checking if g++ supports -c -o file.o... (cached) yes checking whether the g++ linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether ln -s works... yes checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... no checking for ANSI C header files... (cached) yes checking for doxygen... no configure: WARNING: doxygen not found - will not generate any doxygen documentation checking for perl... /usr/bin/perl checking for an ANSI C-conforming const... yes checking for inline... inline checking whether time.h and sys/time.h may both be included... yes checking whether gcc needs -traditional... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libGenome/Makefile config.status: creating libGenome.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build make -j15 make[1]: Entering directory '/build/libgenome-1.3.11+svn20110227.4616' make all-recursive make[2]: Entering directory '/build/libgenome-1.3.11+svn20110227.4616' Making all in libGenome make[3]: Entering directory '/build/libgenome-1.3.11+svn20110227.4616/libGenome' /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnFilter.lo gnFilter.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnCompare.lo gnCompare.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnTranslator.lo gnTranslator.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnSourceFactory.lo gnSourceFactory.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnFeature.lo gnFeature.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnSourceQualifier.lo gnSourceQualifier.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnFileContig.lo gnFileContig.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnSourceSpec.lo gnSourceSpec.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnFileSource.lo gnFileSource.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnFASSource.lo gnFASSource.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnFragmentSpec.lo gnFragmentSpec.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnStringSpec.lo gnStringSpec.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnGBKSource.lo gnGBKSource.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnStringTools.lo gnStringTools.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnGenomeSpec.lo gnGenomeSpec.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnTranslator.cpp -fPIC -DPIC -o .libs/gnTranslator.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnSourceFactory.cpp -fPIC -DPIC -o .libs/gnSourceFactory.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnCompare.cpp -fPIC -DPIC -o .libs/gnCompare.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnSourceQualifier.cpp -fPIC -DPIC -o .libs/gnSourceQualifier.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnFeature.cpp -fPIC -DPIC -o .libs/gnFeature.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnStringTools.cpp -fPIC -DPIC -o .libs/gnStringTools.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnGBKSource.cpp -fPIC -DPIC -o .libs/gnGBKSource.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnFileSource.cpp -fPIC -DPIC -o .libs/gnFileSource.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnSourceSpec.cpp -fPIC -DPIC -o .libs/gnSourceSpec.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnGenomeSpec.cpp -fPIC -DPIC -o .libs/gnGenomeSpec.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnFileContig.cpp -fPIC -DPIC -o .libs/gnFileContig.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnFASSource.cpp -fPIC -DPIC -o .libs/gnFASSource.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnStringSpec.cpp -fPIC -DPIC -o .libs/gnStringSpec.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnFragmentSpec.cpp -fPIC -DPIC -o .libs/gnFragmentSpec.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnFilter.cpp -fPIC -DPIC -o .libs/gnFilter.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnSourceQualifier.cpp -o gnSourceQualifier.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnStringSpec.cpp -o gnStringSpec.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnFileContig.cpp -o gnFileContig.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnSourceSpec.cpp -o gnSourceSpec.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnFeature.cpp -o gnFeature.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnFileSource.cpp -o gnFileSource.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnCompare.cpp -o gnCompare.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnFilter.cpp -o gnFilter.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnStringTools.cpp -o gnStringTools.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnLocation.lo gnLocation.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnRAWSource.lo gnRAWSource.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnLocation.cpp -fPIC -DPIC -o .libs/gnLocation.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnRAWSource.cpp -fPIC -DPIC -o .libs/gnRAWSource.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnBaseFeature.lo gnBaseFeature.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnSEQSource.lo gnSEQSource.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnSequence.lo gnSequence.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnContigSpec.lo gnContigSpec.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnSEQSource.cpp -fPIC -DPIC -o .libs/gnSEQSource.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnBaseFeature.cpp -fPIC -DPIC -o .libs/gnBaseFeature.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnGenomeSpec.cpp -o gnGenomeSpec.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnLocation.cpp -o gnLocation.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnSequence.cpp -fPIC -DPIC -o .libs/gnSequence.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnContigSpec.cpp -fPIC -DPIC -o .libs/gnContigSpec.o /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnSourceHeader.lo gnSourceHeader.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnException.lo gnException.cpp /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnFastTranslator.lo gnFastTranslator.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnSourceHeader.cpp -fPIC -DPIC -o .libs/gnSourceHeader.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnFastTranslator.cpp -fPIC -DPIC -o .libs/gnFastTranslator.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnException.cpp -fPIC -DPIC -o .libs/gnException.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnSourceFactory.cpp -o gnSourceFactory.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnPosSpecificTranslator.lo gnPosSpecificTranslator.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnFragmentSpec.cpp -o gnFragmentSpec.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnContigSpec.cpp -o gnContigSpec.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnPosSpecificTranslator.cpp -fPIC -DPIC -o .libs/gnPosSpecificTranslator.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnFASSource.cpp -o gnFASSource.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnRAWSource.cpp -o gnRAWSource.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnSourceHeader.cpp -o gnSourceHeader.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnBaseFeature.cpp -o gnBaseFeature.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnException.cpp -o gnException.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c -o gnDefs.lo gnDefs.cpp libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnFastTranslator.cpp -o gnFastTranslator.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnDefs.cpp -fPIC -DPIC -o .libs/gnDefs.o libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnPosSpecificTranslator.cpp -o gnPosSpecificTranslator.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnDefs.cpp -o gnDefs.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnSequence.cpp -o gnSequence.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnSEQSource.cpp -o gnSEQSource.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnGBKSource.cpp -o gnGBKSource.o >/dev/null 2>&1 libtool: compile: g++ -DHAVE_CONFIG_H -I. -I.. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -c gnTranslator.cpp -o gnTranslator.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link g++ -g -O2 -ffile-prefix-map=/build/libgenome-1.3.11+svn20110227.4616=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 1:3:1 -Wl,-z,relro -Wl,-z,now -o libGenome.la -rpath /usr/lib/x86_64-linux-gnu gnFilter.lo gnCompare.lo gnTranslator.lo gnSourceFactory.lo gnFeature.lo gnSourceQualifier.lo gnFileContig.lo gnSourceSpec.lo gnFileSource.lo gnFASSource.lo gnFragmentSpec.lo gnStringSpec.lo gnGBKSource.lo gnStringTools.lo gnGenomeSpec.lo gnLocation.lo gnRAWSource.lo gnBaseFeature.lo gnSEQSource.lo gnSequence.lo gnContigSpec.lo gnSourceHeader.lo gnException.lo gnFastTranslator.lo gnPosSpecificTranslator.lo gnDefs.lo libtool: link: g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crti.o /usr/lib/gcc/x86_64-linux-gnu/8/crtbeginS.o .libs/gnFilter.o .libs/gnCompare.o .libs/gnTranslator.o .libs/gnSourceFactory.o .libs/gnFeature.o .libs/gnSourceQualifier.o .libs/gnFileContig.o .libs/gnSourceSpec.o .libs/gnFileSource.o .libs/gnFASSource.o .libs/gnFragmentSpec.o .libs/gnStringSpec.o .libs/gnGBKSource.o .libs/gnStringTools.o .libs/gnGenomeSpec.o .libs/gnLocation.o .libs/gnRAWSource.o .libs/gnBaseFeature.o .libs/gnSEQSource.o .libs/gnSequence.o .libs/gnContigSpec.o .libs/gnSourceHeader.o .libs/gnException.o .libs/gnFastTranslator.o .libs/gnPosSpecificTranslator.o .libs/gnDefs.o -L/usr/lib/gcc/x86_64-linux-gnu/8 -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu -L/usr/lib/gcc/x86_64-linux-gnu/8/../../../../lib -L/lib/x86_64-linux-gnu -L/lib/../lib -L/usr/lib/x86_64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/x86_64-linux-gnu/8/../../.. -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc/x86_64-linux-gnu/8/crtendS.o /usr/lib/gcc/x86_64-linux-gnu/8/../../../x86_64-linux-gnu/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libGenome.so.0 -o .libs/libGenome.so.0.1.3 libtool: link: (cd ".libs" && rm -f "libGenome.so.0" && ln -s "libGenome.so.0.1.3" "libGenome.so.0") libtool: link: (cd ".libs" && rm -f "libGenome.so" && ln -s "libGenome.so.0.1.3" "libGenome.so") libtool: link: ar cru .libs/libGenome.a gnFilter.o gnCompare.o gnTranslator.o gnSourceFactory.o gnFeature.o gnSourceQualifier.o gnFileContig.o gnSourceSpec.o gnFileSource.o gnFASSource.o gnFragmentSpec.o gnStringSpec.o gnGBKSource.o gnStringTools.o gnGenomeSpec.o gnLocation.o gnRAWSource.o gnBaseFeature.o gnSEQSource.o gnSequence.o gnContigSpec.o gnSourceHeader.o gnException.o gnFastTranslator.o gnPosSpecificTranslator.o gnDefs.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libGenome.a libtool: link: ( cd ".libs" && rm -f "libGenome.la" && ln -s "../libGenome.la" "libGenome.la" ) make[3]: Leaving directory '/build/libgenome-1.3.11+svn20110227.4616/libGenome' make[3]: Entering directory '/build/libgenome-1.3.11+svn20110227.4616' make[3]: Leaving directory '/build/libgenome-1.3.11+svn20110227.4616' make[2]: Leaving directory '/build/libgenome-1.3.11+svn20110227.4616' make[1]: Leaving directory '/build/libgenome-1.3.11+svn20110227.4616' debian/rules override_dh_auto_test make[1]: Entering directory '/build/libgenome-1.3.11+svn20110227.4616' echo 'Disable test since some header (gnDNXSource.h) seems to be missing.' Disable test since some header (gnDNXSource.h) seems to be missing. make[1]: Leaving directory '/build/libgenome-1.3.11+svn20110227.4616' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j1 install DESTDIR=/build/libgenome-1.3.11\+svn20110227.4616/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/libgenome-1.3.11+svn20110227.4616' Making install in libGenome make[2]: Entering directory '/build/libgenome-1.3.11+svn20110227.4616/libGenome' make[3]: Entering directory '/build/libgenome-1.3.11+svn20110227.4616/libGenome' /bin/mkdir -p '/build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libGenome.la '/build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libGenome.so.0.1.3 /build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so.0.1.3 libtool: install: (cd /build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libGenome.so.0.1.3 libGenome.so.0 || { rm -f libGenome.so.0 && ln -s libGenome.so.0.1.3 libGenome.so.0; }; }) libtool: install: (cd /build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libGenome.so.0.1.3 libGenome.so || { rm -f libGenome.so && ln -s libGenome.so.0.1.3 libGenome.so; }; }) libtool: install: /usr/bin/install -c .libs/libGenome.lai /build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.la libtool: install: /usr/bin/install -c .libs/libGenome.a /build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.a libtool: install: chmod 644 /build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.a libtool: install: ranlib /build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/include/libGenome' /usr/bin/install -c -m 644 gnABISource.h gnDataBaseSource.h gnLocation.h gnSetup.h gnBaseFeature.h gnDebug.h gnMultiSpec.h gnSourceFactory.h gnBaseFilter.h gnDefs.h gnSourceHeader.h gnPosSpecificTranslator.h gnBaseHeader.h gnFASSource.h gnSourceQualifier.h gnBaseQualifier.h gnSourceSpec.h gnStringQualifier.h gnBaseSource.h gnFeature.h gnProteinSequence.h gnStringHeader.h gnBaseSpec.h gnFileContig.h gnRAWSource.h gnClone.h gnFileSource.h gnRNASequence.h gnStringSpec.h gnCompare.h gnFilter.h gnSEQSource.h gnStringTools.h gnContigSpec.h gnFragmentSpec.h gnTranslator.h gnDNASequence.h gnGBKSource.h gnVersion.h gnFastTranslator.h '/build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/include/libGenome' /usr/bin/install -c -m 644 gnGenomeSpec.h gnSequence.h gnException.h gnExceptionCode.h IntervalSequenceTree.h OmpGuard.h '/build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/include/libGenome' make[3]: Leaving directory '/build/libgenome-1.3.11+svn20110227.4616/libGenome' make[2]: Leaving directory '/build/libgenome-1.3.11+svn20110227.4616/libGenome' make[2]: Entering directory '/build/libgenome-1.3.11+svn20110227.4616' make[3]: Entering directory '/build/libgenome-1.3.11+svn20110227.4616' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libGenome.pc '/build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[3]: Leaving directory '/build/libgenome-1.3.11+svn20110227.4616' make[2]: Leaving directory '/build/libgenome-1.3.11+svn20110227.4616' make[1]: Leaving directory '/build/libgenome-1.3.11+svn20110227.4616' debian/rules override_dh_install make[1]: Entering directory '/build/libgenome-1.3.11+svn20110227.4616' dh_install # Call d-shlibmove to comply with library packaging guide # mv debian/tmp/usr/include/*/* debian/tmp/usr/include/ d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/x86_64-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libgenome-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libgenome0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.a debian/libgenome-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so debian/libgenome-dev/usr/lib/x86_64-linux-gnu mv /build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so.0 debian/libgenome0/usr/lib/x86_64-linux-gnu mv /build/libgenome-1.3.11+svn20110227.4616/debian/tmp/usr/lib/x86_64-linux-gnu/libGenome.so.0.1.3 debian/libgenome0/usr/lib/x86_64-linux-gnu PKGDEV=libgenome-dev PKGSHL=libgenome0 install -d -m 755 debian/libgenome-dev/usr/include mv debian/tmp/usr/include/libGenome debian/libgenome-dev/usr/include install -d -m 755 debian/libgenome-dev/usr/lib/x86_64-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libgenome-dev/usr/lib/x86_64-linux-gnu/pkgconfig make[1]: Leaving directory '/build/libgenome-1.3.11+svn20110227.4616' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dpkg-gensymbols: warning: some new symbols appeared in the symbols file: see diff output below dpkg-gensymbols: warning: debian/libgenome0/DEBIAN/symbols doesn't match completely debian/libgenome0.symbols.amd64 --- debian/libgenome0.symbols.amd64 (libgenome0_1.3.11+svn20110227.4616-2_amd64) +++ dpkg-gensymbols5sXv9M 2020-12-10 12:04:38.654653031 -1200 @@ -621,6 +621,7 @@ _ZNKSt5ctypeIcE8do_widenEc@Base 1.3.11+svn20110227.4616 _ZNKSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_PN6genome12gnBaseSourceEESt10_Select1stISB_ESt4lessIS5_ESaISB_EE4findERS7_@Base 1.3.11+svn20110227.4616 _ZNSt6vectorIN6genome10gnLocationESaIS1_EE17_M_realloc_insertIJRKS1_EEEvN9__gnu_cxx17__normal_iteratorIPS1_S3_EEDpOT_@Base 1.3.11+svn20110227.4616 + _ZNSt6vectorIN6genome10gnLocationESaIS1_EE6insertEN9__gnu_cxx17__normal_iteratorIPKS1_S3_EERS6_@Base 1.3.11+svn20110227.4616-2 _ZNSt6vectorIN6genome10gnLocationESaIS1_EED1Ev@Base 1.3.11+svn20110227.4616 _ZNSt6vectorIN6genome10gnLocationESaIS1_EED2Ev@Base 1.3.11+svn20110227.4616 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EE12emplace_backIJS5_EEEvDpOT_@Base 1.3.11+svn20110227.4616 @@ -632,7 +633,7 @@ _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EED2Ev@Base 1.3.11+svn20110227.4616 _ZNSt6vectorINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESaIS5_EEaSERKS7_@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 - (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 +#MISSING: 1.3.11+svn20110227.4616-2# (optional)_ZNSt6vectorIPN6genome12gnBaseHeaderESaIS2_EE17_M_realloc_insertIJS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 _ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE17_M_realloc_insertIJRKS2_EEEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEDpOT_@Base 1.3.11+svn20110227.4616 _ZNSt6vectorIPN6genome12gnBaseSourceESaIS2_EE8_M_eraseEN9__gnu_cxx17__normal_iteratorIPS2_S4_EE@Base 1.3.11+svn20110227.4616 (optional)_ZNSt6vectorIPN6genome12gnContigSpecESaIS2_EE13_M_insert_auxIS2_EEvN9__gnu_cxx17__normal_iteratorIPS2_S4_EEOT_@Base 1.3.11+svn20110227.4616 dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libgenome0-dbgsym' in '../libgenome0-dbgsym_1.3.11+svn20110227.4616-2_amd64.deb'. dpkg-deb: building package 'libgenome-dev' in '../libgenome-dev_1.3.11+svn20110227.4616-2_amd64.deb'. dpkg-deb: building package 'libgenome0' in '../libgenome0_1.3.11+svn20110227.4616-2_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../libgenome_1.3.11+svn20110227.4616-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/49550 and its subdirectories I: Current time: Thu Dec 10 12:04:50 -12 2020 I: pbuilder-time-stamp: 1607645090 Fri Dec 11 00:04:51 UTC 2020 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Fri Dec 11 00:04:51 UTC 2020 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Fri Dec 11 00:08:29 UTC 2020 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Fri Dec 11 00:08:30 UTC 2020 I: libgenome_1.3.11+svn20110227.4616-2_amd64.changes: Format: 1.8 Date: Mon, 13 Aug 2018 15:08:30 +0000 Source: libgenome Binary: libgenome-dev libgenome0 libgenome0-dbgsym Architecture: amd64 Version: 1.3.11+svn20110227.4616-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Graham Inggs Description: libgenome-dev - toolkit for developing bioinformatic related software (devel) libgenome0 - toolkit for developing bioinformatic related software Closes: 905566 Changes: libgenome (1.3.11+svn20110227.4616-2) unstable; urgency=medium . * Update symbols for GCC 8 and make them amd64-only (Closes: #905566) Checksums-Sha1: 2424e394f25aea9c8ebd9948bdf0b5bf8ab302fe 183324 libgenome-dev_1.3.11+svn20110227.4616-2_amd64.deb 9129041677bd25873bdfc06d5e79fd2447f814ea 2084428 libgenome0-dbgsym_1.3.11+svn20110227.4616-2_amd64.deb 28e69cd671a29641debf73e8036e5c0332245900 119080 libgenome0_1.3.11+svn20110227.4616-2_amd64.deb e777437a6bf47bc243b6e965d308e345ce2d50c6 5569 libgenome_1.3.11+svn20110227.4616-2_amd64.buildinfo Checksums-Sha256: d64efdf8b4c548cb68c284f9f7c867f0801954de78201a150680a853f7834a36 183324 libgenome-dev_1.3.11+svn20110227.4616-2_amd64.deb cf04f49e25ec4409e47f26ea253f9569774315bd3a17665f560a36a14b615934 2084428 libgenome0-dbgsym_1.3.11+svn20110227.4616-2_amd64.deb 8cea102ef6173bd3cd0544f86934e1c6efb768a37620f6eb97e5dd5cb42139e4 119080 libgenome0_1.3.11+svn20110227.4616-2_amd64.deb d19fe1dd0a3cb23794978a0c510398d1f64e575e4907f1c2d0721198b0f0f9e6 5569 libgenome_1.3.11+svn20110227.4616-2_amd64.buildinfo Files: 19eefa1e90f213e5a47f9625403174c4 183324 libdevel optional libgenome-dev_1.3.11+svn20110227.4616-2_amd64.deb 65296fb31fa4f3360873419e22548f1e 2084428 debug optional libgenome0-dbgsym_1.3.11+svn20110227.4616-2_amd64.deb 5f806c5f8f9739182542dbbf5b80b0af 119080 libs optional libgenome0_1.3.11+svn20110227.4616-2_amd64.deb 12f430fb7d1b2285255bb2f5311f0a86 5569 science optional libgenome_1.3.11+svn20110227.4616-2_amd64.buildinfo Fri Dec 11 00:08:31 UTC 2020 I: diffoscope 162 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.PvaczJsP28/libgenome_1.3.11+svn20110227.4616-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.PvaczJsP28/libgenome_1.3.11+svn20110227.4616-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.PvaczJsP28/libgenome_1.3.11+svn20110227.4616-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.PvaczJsP28/b1/libgenome_1.3.11+svn20110227.4616-2_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.PvaczJsP28/b2/libgenome_1.3.11+svn20110227.4616-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.342s) 0.342s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.057s) 0.057s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Fri Dec 11 00:08:33 UTC 2020 I: diffoscope 162 found no differences in the changes files, and a .buildinfo file also exists. Fri Dec 11 00:08:33 UTC 2020 I: libgenome from buster built successfully and reproducibly on amd64. Fri Dec 11 00:08:34 UTC 2020 I: Submitting .buildinfo files to external archives: Fri Dec 11 00:08:34 UTC 2020 I: Submitting 8.0K b1/libgenome_1.3.11+svn20110227.4616-2_amd64.buildinfo.asc Fri Dec 11 00:08:35 UTC 2020 I: Submitting 8.0K b2/libgenome_1.3.11+svn20110227.4616-2_amd64.buildinfo.asc Fri Dec 11 00:08:36 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Dec 11 00:08:36 UTC 2020 I: Done submitting .buildinfo files. Fri Dec 11 00:08:36 UTC 2020 I: Removing signed libgenome_1.3.11+svn20110227.4616-2_amd64.buildinfo.asc files: removed './b1/libgenome_1.3.11+svn20110227.4616-2_amd64.buildinfo.asc' removed './b2/libgenome_1.3.11+svn20110227.4616-2_amd64.buildinfo.asc'