Thu Jul 15 15:47:54 UTC 2021 I: starting to build kalign/buster/amd64 on jenkins on '2021-07-15 15:47' Thu Jul 15 15:47:54 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_15/67590/console.log Thu Jul 15 15:47:54 UTC 2021 I: Downloading source for buster/kalign=1:2.03+20110620-5 --2021-07-15 15:47:54-- http://deb.debian.org/debian/pool/main/k/kalign/kalign_2.03+20110620-5.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2013 (2.0K) Saving to: ‘kalign_2.03+20110620-5.dsc’ 0K . 100% 15.6M=0s 2021-07-15 15:47:54 (15.6 MB/s) - ‘kalign_2.03+20110620-5.dsc’ saved [2013/2013] Thu Jul 15 15:47:54 UTC 2021 I: kalign_2.03+20110620-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: kalign Binary: kalign Architecture: any Version: 1:2.03+20110620-5 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: http://msa.sbc.su.se/ Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/kalign Vcs-Git: https://salsa.debian.org/med-team/kalign.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~) Package-List: kalign deb science optional arch=any Checksums-Sha1: 8bf4c1afe90e8d529840c0906c7b740299fe4041 111456 kalign_2.03+20110620.orig.tar.gz 31f967dd4928382981e5cf6e51a02dceaaa0c014 7876 kalign_2.03+20110620-5.debian.tar.xz Checksums-Sha256: 8cf20ac4e1807dc642e7ffba8f42a117313beccaee4f87c5555d53a2eeac4cbb 111456 kalign_2.03+20110620.orig.tar.gz d08d01823c95e32273f5254062653ef95ef851a08901d5ab163e4fc69b6805ee 7876 kalign_2.03+20110620-5.debian.tar.xz Files: bde173eb65e617ed73cd78bad7f881a3 111456 kalign_2.03+20110620.orig.tar.gz 518ae6c583e9c949682511c43f4e4ad0 7876 kalign_2.03+20110620-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlw0nYsRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEnwBAAipHNNHuC3i4whATfQnzDLIHH8oOy+RKK ZPNWdjh1XnoNaQdyBrTIGx7KQst1e52UvzDsl340AdFufgzHrctSMxGSJfDJlphQ yRWHz3O2q6QL4B9qocJr2OTivHJ0PjT5NctwOmfYAR7uKVJbQMEAg/Kd3+pYcFYO HvQk24n2gIWKzLR4r8bIXd8VpQ1AyaTl0hZOM2xK0KAMdpgK0aBXAxDTTpkHbMfy Wcq6oVvyQ1CGfwiDYToDIxwQ6ae0HXpbtW8VXcc71gaZmFXAK2OuMftagtS6fn33 epsotbKpu+cUWj9ealbaX0740LNozS7QjTBpEPfZL3SCjdyZUkiYTlpoM6+vbf2a VJWUsJI8R0sOlQSEE49AI/pER1sq+9p2y7Sq7tH/0UFW0VblmehOgcyC2XQ5x9zt vB43OEFjftDstH7QA9Xpm+4vp2m01kjax1DCFqkHft2AdKXjUeIAQQwUx8sRKp50 3qAV8M5dZwF37JO7HOQfdHci01nzLgWiyHirrjV4qYDLbfgFZaXSbTqSq6y8AfQ6 6uoJzZfi2ieMR8aMg6/nVBA/wFf40kmfDO1xubDFTcRJQPBWhYNrXSGSg16X3hL7 9F3Vgp7Iwe906YiTZSvmMhs63iBEWgy9ua7uQcQMYqGQ30J2Ac2s9UONqjHQ98Xl 10xlgRUv+jY= =VxVs -----END PGP SIGNATURE----- Thu Jul 15 15:47:54 UTC 2021 I: Checking whether the package is not for us Thu Jul 15 15:47:54 UTC 2021 I: Starting 1st build on remote node ionos11-amd64.debian.net. Thu Jul 15 15:47:54 UTC 2021 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Thu Jul 15 15:49:14 UTC 2021 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jul 15 03:47:57 -12 2021 I: pbuilder-time-stamp: 1626364077 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [kalign_2.03+20110620-5.dsc] I: copying [./kalign_2.03+20110620.orig.tar.gz] I: copying [./kalign_2.03+20110620-5.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Jan 8 00:54:35 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kalign_2.03+20110620-5.dsc dpkg-source: info: extracting kalign in kalign-2.03+20110620 dpkg-source: info: unpacking kalign_2.03+20110620.orig.tar.gz dpkg-source: info: unpacking kalign_2.03+20110620-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying cross.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/41038/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='ba27d730f2044628b1bb4ec701386621' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='41038' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.WceJO5rzOX/pbuilderrc_9u57 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.WceJO5rzOX/b1 --logfile b1/build.log kalign_2.03+20110620-5.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 4.19.0-17-amd64 #1 SMP Debian 4.19.194-2 (2021-06-21) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 6 20:24 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/41038/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 19.0 MB of archives. After unpacking 69.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Fetched 19.0 MB in 0s (51.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3+deb10u1_amd64.deb ... Unpacking groff-base (1.22.4-3+deb10u1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4+deb10u2) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking file (1:5.35-4+deb10u2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../11-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... 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Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... No schema files found: doing nothing. Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/kalign-2.03+20110620/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package kalign dpkg-buildpackage: info: source version 1:2.03+20110620-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking for an ANSI C-conforming const... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible malloc... yes checking for stdlib.h... (cached) yes checking for GNU libc compatible realloc... yes configure: creating ./config.status config.status: creating Makefile config.status: creating config.h configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking dh_auto_build make -j15 make[1]: Entering directory '/build/kalign-2.03+20110620' gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_distance_calculation.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_dp.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_input.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_main.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_mem.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_inferface.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_misc.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_tree.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_profile.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_alignment_types.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_feature.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_hirschberg.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_advanced_gaps.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_hirschberg_dna.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_output.c kalign2_feature.c: In function 'feature_hirsch_align_two_pp_vector': kalign2_feature.c:436:8: warning: variable 'j' set but not used [-Wunused-but-set-variable] int i,j,c; ^ kalign2_advanced_gaps.c: In function 'advanced_hirsch_align_two_pp_vector': kalign2_advanced_gaps.c:427:8: warning: variable 'j' set but not used [-Wunused-but-set-variable] int i,j,c; ^ kalign2_hirschberg.c: In function 'hirsch_align_two_ss_vector': kalign2_hirschberg.c:335:8: warning: variable 'j' set but not used [-Wunused-but-set-variable] int i,j,c; ^ kalign2_hirschberg_dna.c: In function 'hirsch_align_two_dna_ss_vector': kalign2_hirschberg_dna.c:327:8: warning: variable 'j' set but not used [-Wunused-but-set-variable] int i,j,c; ^ kalign2_hirschberg_dna.c: In function 'hirsch_align_two_dna_ps_vector': kalign2_hirschberg.c: In function 'hirsch_align_two_ps_vector': kalign2_hirschberg.c:908:8: warning: variable 'j' set but not used [-Wunused-but-set-variable] int i,j,c; ^ kalign2_hirschberg_dna.c:875:8: warning: variable 'j' set but not used [-Wunused-but-set-variable] int i,j,c; ^ kalign2_hirschberg.c: In function 'hirsch_align_two_pp_vector': kalign2_hirschberg.c:1501:8: warning: variable 'j' set but not used [-Wunused-but-set-variable] int i,j,c; ^ kalign2_hirschberg_dna.c: In function 'hirsch_align_two_dna_pp_vector': kalign2_hirschberg_dna.c:1444:8: warning: variable 'j' set but not used [-Wunused-but-set-variable] int i,j,c; ^ gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_string_matching.c gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall -c kalign2_profile_alignment.c kalign2_tree.c: In function 'find_best_topology': kalign2_tree.c:453:13: warning: argument 1 value '18446744073709551604' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] tmp_tree = malloc(sizeof(int)*(local_ntree+local_ntree-1)*3); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from kalign2.h:27, from kalign2_tree.c:26: /usr/include/stdlib.h:539:14: note: in a call to allocation function 'malloc' declared here extern void *malloc (size_t __size) __THROW __attribute_malloc__ __wur; ^~~~~~ gcc -g -O2 -ffile-prefix-map=/build/kalign-2.03+20110620=. -fstack-protector-strong -Wformat -Werror=format-security -O9 -Wall kalign2_distance_calculation.o kalign2_dp.o kalign2_input.o kalign2_main.o kalign2_mem.o kalign2_inferface.o kalign2_misc.o kalign2_tree.o kalign2_profile.o kalign2_alignment_types.o kalign2_feature.o kalign2_hirschberg.o kalign2_advanced_gaps.o kalign2_hirschberg_dna.o kalign2_output.o kalign2_string_matching.o kalign2_profile_alignment.o -o kalign -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/kalign-2.03+20110620' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/kalign-2.03+20110620' # do nothing make[1]: Leaving directory '/build/kalign-2.03+20110620' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'kalign' in '../kalign_2.03+20110620-5_amd64.deb'. dpkg-deb: building package 'kalign-dbgsym' in '../kalign-dbgsym_2.03+20110620-5_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../kalign_2.03+20110620-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/41038 and its subdirectories I: Current time: Thu Jul 15 03:49:14 -12 2021 I: pbuilder-time-stamp: 1626364154 Thu Jul 15 15:49:15 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Thu Jul 15 15:49:15 UTC 2021 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Thu Jul 15 15:50:25 UTC 2021 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Thu Jul 15 15:50:26 UTC 2021 I: kalign_2.03+20110620-5_amd64.changes: Format: 1.8 Date: Tue, 08 Jan 2019 13:51:16 +0100 Source: kalign Binary: kalign kalign-dbgsym Architecture: amd64 Version: 1:2.03+20110620-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: kalign - Global and progressive multiple sequence alignment Changes: kalign (1:2.03+20110620-5) unstable; urgency=medium . [ Jelmer Vernooij ] * Use secure copyright file specification URI. . [ Andreas Tille ] * Fake watch file * Point Vcs fields to salsa.debian.org * Standards-Version: 4.3.0 Checksums-Sha1: 047f215acff81f59240206064a1cf5d4a473d413 181692 kalign-dbgsym_2.03+20110620-5_amd64.deb 7d6c95cc02093ae607b9e45d14f213bdcf67438a 4709 kalign_2.03+20110620-5_amd64.buildinfo 77a0ab025e00ad6dd5825966bda355df4bd29e45 93732 kalign_2.03+20110620-5_amd64.deb Checksums-Sha256: 4c4ac5d13ab358adcc4bab79caee77622885534840dc612f3480b687af622319 181692 kalign-dbgsym_2.03+20110620-5_amd64.deb b3aa056bbaf40ae023829276195ed2ed0442e05c75eba1ab062dded5a9567c8e 4709 kalign_2.03+20110620-5_amd64.buildinfo 5f04de3f506261701617258092137649521cf4484a00959edbc11e2521b398d8 93732 kalign_2.03+20110620-5_amd64.deb Files: cff6471cd9397e8b541da13ca1085e11 181692 debug optional kalign-dbgsym_2.03+20110620-5_amd64.deb 105375bf92bcefcc9db7c97f0083b5c6 4709 science optional kalign_2.03+20110620-5_amd64.buildinfo 6411da450981bc421fbe501219298f61 93732 science optional kalign_2.03+20110620-5_amd64.deb Thu Jul 15 15:50:27 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.WceJO5rzOX/kalign_2.03+20110620-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.WceJO5rzOX/kalign_2.03+20110620-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.WceJO5rzOX/kalign_2.03+20110620-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.WceJO5rzOX/b1/kalign_2.03+20110620-5_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.WceJO5rzOX/b2/kalign_2.03+20110620-5_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.250s) 0.250s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.026s) 0.026s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Thu Jul 15 15:50:30 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Thu Jul 15 15:50:30 UTC 2021 I: kalign from buster built successfully and reproducibly on amd64. Thu Jul 15 15:50:31 UTC 2021 I: Submitting .buildinfo files to external archives: Thu Jul 15 15:50:31 UTC 2021 I: Submitting 8.0K b1/kalign_2.03+20110620-5_amd64.buildinfo.asc Thu Jul 15 15:50:32 UTC 2021 I: Submitting 8.0K b2/kalign_2.03+20110620-5_amd64.buildinfo.asc Thu Jul 15 15:50:32 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jul 15 15:50:32 UTC 2021 I: Done submitting .buildinfo files. Thu Jul 15 15:50:32 UTC 2021 I: Removing signed kalign_2.03+20110620-5_amd64.buildinfo.asc files: removed './b1/kalign_2.03+20110620-5_amd64.buildinfo.asc' removed './b2/kalign_2.03+20110620-5_amd64.buildinfo.asc'