Sat Dec 4 17:52:21 UTC 2021 I: starting to build isospec/buster/amd64 on jenkins on '2021-12-04 17:52' Sat Dec 4 17:52:21 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_26/88017/console.log Sat Dec 4 17:52:21 UTC 2021 I: Downloading source for buster/isospec=1.9.1-5 --2021-12-04 17:52:21-- http://deb.debian.org/debian/pool/main/i/isospec/isospec_1.9.1-5.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2315 (2.3K) Saving to: ‘isospec_1.9.1-5.dsc’ 0K .. 100% 1.47M=0.002s 2021-12-04 17:52:21 (1.47 MB/s) - ‘isospec_1.9.1-5.dsc’ saved [2315/2315] Sat Dec 4 17:52:21 UTC 2021 I: isospec_1.9.1-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: isospec Binary: libisospec++-dev, libisospec++1, libisospec++-doc, r-cran-isospec, python3-isospec Architecture: any all Version: 1.9.1-5 Maintainer: The Debichem Group Uploaders: Filippo Rusconi Homepage: https://github.com/MatteoLacki/IsoSpec Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/debichem-team/isospec Vcs-Git: https://salsa.debian.org/debichem-team/isospec.git Build-Depends: debhelper (>= 11~), dh-python, dh-r, r-base-dev, r-cran-rcpp, python-dev, python-setuptools, python3-dev, python3-setuptools, python3-cffi, doxygen, libjs-mathjax Package-List: libisospec++-dev deb libdevel optional arch=any libisospec++-doc deb doc optional arch=all libisospec++1 deb libs optional arch=any python3-isospec deb python optional arch=any r-cran-isospec deb gnu-r optional arch=any Checksums-Sha1: f93754d53e19ae81747fa2e3b1127e65259c4e74 1329290 isospec_1.9.1.orig.tar.gz ccf76dba7b797678216dc9c2ac5ad6eb2398af0b 30444 isospec_1.9.1-5.debian.tar.xz Checksums-Sha256: 1705855f59e708950e1e8ee08fe2816367e32330869f1d6900f49c6964a8079c 1329290 isospec_1.9.1.orig.tar.gz ab971b1f2b94df0e1ca9a2a4bfdc768b24f6a7a585a356a6ecd060f780bf2b6b 30444 isospec_1.9.1-5.debian.tar.xz Files: f40719ed81b0f11bb88d7eb2ca78777e 1329290 isospec_1.9.1.orig.tar.gz a93653f1c4c30e55e23962c4176bdefc 30444 isospec_1.9.1-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEsFMwThfW1Bndm0ZRQatITXaUz0IFAlx/+M4ACgkQQatITXaU z0IDbA/9GGdFGkPXZ+KeR5wp9m5glJ+mqnXu2jWkqK8mHV8MMXkvweY6OpjmdQQa q9Ms/l07ISrnQNDKK+YnLCisMni99Ppshb+cVV5xph+DuZJNM2nFsDUZWah8iIaY e9fybwqqtLRhqqRVVtxxaxh5vrCcCnDrrX4EPYTGXQTHsGaMofk/vH7nSKSskcFO dwGBs+7d/ZjQpQm8xAciw7bABMhkElWqNJcXMyXbYHB6rNGg6Wv6GMgr6ZBsl3/t 3yFESfGOFfyVEbBZdSFfJ9mjZ+lOxeWmFnYIFgSOmPxhPvV6iwyW9bLM5Pi207g+ CtmAAUJAykT8qlTy/RYGMAi/tXx1jY1YLYi0iJe2SvlrgdzHbUjNekDBmIQ+/PPW TKhStUiKIy0w9nT8G5P9lCf8SSciSoM4GJ8OBXiEZQQIIouIrMhCIFyVSiN+vPpX ZYZg5PZW86RYWYROhiB19lNDW4m2VOgJtVCSixC27pgRdCzZb7btuZzCd1qAwzXM EtL6vA4VMeqHYEeF+IONsq1fxQwS/pR4OgYVb+7ukwoecv7Ian9kVEIbJsZWzKNQ BEZn2W1OEvzirANaw+1x1TgcDNLSHmZb7ZfM0xppk8/PFugyIIRvSZvmaQmsFg+s Q3+H0jMUMFr9uRA6LD98m28nVWVx3gyesYU/ReVu4PaSVb18UJQ= =QQTm -----END PGP SIGNATURE----- Sat Dec 4 17:52:21 UTC 2021 I: Checking whether the package is not for us Sat Dec 4 17:52:21 UTC 2021 I: Starting 1st build on remote node ionos5-amd64.debian.net. Sat Dec 4 17:52:21 UTC 2021 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Sat Dec 4 17:54:56 UTC 2021 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Jan 6 12:15:23 -12 2023 I: pbuilder-time-stamp: 1673050523 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [isospec_1.9.1-5.dsc] I: copying [./isospec_1.9.1.orig.tar.gz] I: copying [./isospec_1.9.1-5.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Wed Mar 6 04:43:58 2019 -12 gpgv: using RSA key B053304E17D6D419DD9B465141AB484D7694CF42 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./isospec_1.9.1-5.dsc dpkg-source: info: extracting isospec in isospec-1.9.1 dpkg-source: info: unpacking isospec_1.9.1.orig.tar.gz dpkg-source: info: unpacking isospec_1.9.1-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying patch-makefile-arch-flags-and-soname dpkg-source: info: applying patch-fix-include-and-compilation-examples dpkg-source: info: applying patch-mtune-march-flags-removal I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3011896/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='381581f8ac694132aa4ee57517c31f21' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3011896' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.a6n5rNGPOA/pbuilderrc_i6KT --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.a6n5rNGPOA/b1 --logfile b1/build.log isospec_1.9.1-5.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Dec 10 16:21 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/3011896/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), dh-python, dh-r, r-base-dev, r-cran-rcpp, python-dev, python-setuptools, python3-dev, python3-setuptools, python3-cffi, doxygen, libjs-mathjax dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcpp; however: Package r-cran-rcpp is not installed. pbuilder-satisfydepends-dummy depends on python-dev; however: Package python-dev is not installed. pbuilder-satisfydepends-dummy depends on python-setuptools; however: Package python-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-cffi; however: Package python3-cffi is not installed. pbuilder-satisfydepends-dummy depends on doxygen; however: Package doxygen is not installed. pbuilder-satisfydepends-dummy depends on libjs-mathjax; however: Package libjs-mathjax is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-r{a} dh-strip-nondeterminism{a} doxygen{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-8{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclang1-6.0{a} libcroco3{a} libcurl4{a} libdatrie1{a} libedit2{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-8-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libice6{a} libicu-dev{a} libicu63{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-mathjax{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} libldap-common{a} libllvm6.0{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnghttp2-14{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpcre16-3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.7{a} libpython3.7-dev{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline-dev{a} libreadline7{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libssl1.1{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff5{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp6{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} littler{a} lsb-base{a} m4{a} man-db{a} mime-support{a} openssl{a} pkg-config{a} po-debconf{a} python{a} python-dev{a} python-minimal{a} python-pkg-resources{a} python-setuptools{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-cffi{a} python3-cffi-backend{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-ply{a} python3-pycparser{a} python3-setuptools{a} python3.7{a} python3.7-dev{a} python3.7-minimal{a} r-base-core{a} r-base-dev{a} r-cran-littler{a} r-cran-pkgkitten{a} r-cran-rcpp{a} readline-common{a} sensible-utils{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc curl devscripts krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 183 newly installed, 0 to remove and 0 not upgraded. Need to get 218 MB of archives. After unpacking 618 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u1 [1369 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u7 [1539 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u1 [1912 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 python2.7 amd64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 python amd64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1d-0+deb10u7 [845 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 dctrl-tools amd64 2.24-3 [103 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 dh-python all 3.20190308 [99.3 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 zip amd64 3.0-11+b1 [234 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 unzip amd64 6.0-23+deb10u2 [172 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 libpaper1 amd64 1.1.28 [21.3 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 libpaper-utils amd64 1.1.28 [18.0 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u2 [380 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get: 78 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get: 80 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get: 81 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get: 82 http://deb.debian.org/debian buster/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get: 83 http://deb.debian.org/debian buster/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get: 84 http://deb.debian.org/debian buster/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get: 85 http://deb.debian.org/debian buster/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get: 86 http://deb.debian.org/debian buster/main amd64 libcairo2 amd64 1.16.0-4+deb10u1 [688 kB] Get: 87 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get: 88 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u3 [65.8 kB] Get: 89 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u3 [122 kB] Get: 90 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u3 [370 kB] Get: 91 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u3 [158 kB] Get: 92 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u1 [69.1 kB] Get: 93 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u1 [106 kB] Get: 94 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u6 [90.0 kB] Get: 95 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u6 [224 kB] Get: 96 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get: 97 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get: 98 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get: 99 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get: 100 http://deb.debian.org/debian buster/main amd64 libcurl4 amd64 7.64.0-4+deb10u2 [332 kB] Get: 101 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get: 102 http://deb.debian.org/debian buster/main amd64 x11-common all 1:7.7+19 [251 kB] Get: 103 http://deb.debian.org/debian buster/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get: 104 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get: 105 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get: 106 http://deb.debian.org/debian buster/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get: 107 http://deb.debian.org/debian buster/main amd64 libfribidi0 amd64 1.0.5-3.1+deb10u1 [63.7 kB] Get: 108 http://deb.debian.org/debian buster/main amd64 libthai-data all 0.1.28-2 [170 kB] Get: 109 http://deb.debian.org/debian buster/main amd64 libdatrie1 amd64 0.2.12-2 [39.3 kB] Get: 110 http://deb.debian.org/debian buster/main amd64 libthai0 amd64 0.1.28-2 [54.1 kB] Get: 111 http://deb.debian.org/debian buster/main amd64 libpango-1.0-0 amd64 1.42.4-8~deb10u1 [186 kB] Get: 112 http://deb.debian.org/debian buster/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get: 113 http://deb.debian.org/debian buster/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get: 114 http://deb.debian.org/debian buster/main amd64 libpangoft2-1.0-0 amd64 1.42.4-8~deb10u1 [68.3 kB] Get: 115 http://deb.debian.org/debian buster/main amd64 libpangocairo-1.0-0 amd64 1.42.4-8~deb10u1 [55.7 kB] Get: 116 http://deb.debian.org/debian buster/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 117 http://deb.debian.org/debian buster/main amd64 libtcl8.6 amd64 8.6.9+dfsg-2 [1005 kB] Get: 118 http://deb.debian.org/debian buster/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get: 119 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2+deb10u1 [261 kB] Get: 120 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u2 [271 kB] Get: 121 http://deb.debian.org/debian buster/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get: 122 http://deb.debian.org/debian buster/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get: 123 http://deb.debian.org/debian buster/main amd64 libtk8.6 amd64 8.6.9-2 [768 kB] Get: 124 http://deb.debian.org/debian buster/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB] Get: 125 http://deb.debian.org/debian buster/main amd64 r-base-core amd64 3.5.2-1 [23.9 MB] Get: 126 http://deb.debian.org/debian buster/main amd64 libgfortran-8-dev amd64 8.3.0-6 [616 kB] Get: 127 http://deb.debian.org/debian buster/main amd64 gfortran-8 amd64 8.3.0-6 [9375 kB] Get: 128 http://deb.debian.org/debian buster/main amd64 gfortran amd64 4:8.3.0-1 [1432 B] Get: 129 http://deb.debian.org/debian buster/main amd64 libblas-dev amd64 3.8.0-2 [154 kB] Get: 130 http://deb.debian.org/debian buster/main amd64 liblapack-dev amd64 3.8.0-2 [2140 kB] Get: 131 http://deb.debian.org/debian buster/main amd64 libncurses-dev amd64 6.1+20181013-2+deb10u2 [333 kB] Get: 132 http://deb.debian.org/debian buster/main amd64 libncurses5-dev amd64 6.1+20181013-2+deb10u2 [948 B] Get: 133 http://deb.debian.org/debian buster/main amd64 libreadline-dev amd64 7.0-5 [133 kB] Get: 134 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo-dev amd64 1:1.5.2-2+deb10u1 [208 kB] Get: 135 http://deb.debian.org/debian buster/main amd64 libjpeg-dev all 1:1.5.2-2+deb10u1 [57.7 kB] Get: 136 http://deb.debian.org/debian buster/main amd64 libpcre16-3 amd64 2:8.39-12 [259 kB] Get: 137 http://deb.debian.org/debian buster/main amd64 libpcre32-3 amd64 2:8.39-12 [250 kB] Get: 138 http://deb.debian.org/debian buster/main amd64 libpcrecpp0v5 amd64 2:8.39-12 [152 kB] Get: 139 http://deb.debian.org/debian buster/main amd64 libpcre3-dev amd64 2:8.39-12 [650 kB] Get: 140 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1 [214 kB] Get: 141 http://deb.debian.org/debian buster/main amd64 libpng-dev amd64 1.6.36-6 [300 kB] Get: 142 http://deb.debian.org/debian buster/main amd64 libbz2-dev amd64 1.0.6-9.2~deb10u1 [30.2 kB] Get: 143 http://deb.debian.org/debian buster/main amd64 liblzma-dev amd64 5.2.4-1 [210 kB] Get: 144 http://deb.debian.org/debian buster/main amd64 icu-devtools amd64 63.1-6+deb10u1 [189 kB] Get: 145 http://deb.debian.org/debian buster/main amd64 libicu-dev amd64 63.1-6+deb10u1 [9186 kB] Get: 146 http://deb.debian.org/debian buster/main amd64 libxmuu1 amd64 2:1.1.2-2+b3 [23.9 kB] Get: 147 http://deb.debian.org/debian buster/main amd64 xauth amd64 1:1.0.10-1 [40.3 kB] Get: 148 http://deb.debian.org/debian buster/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get: 149 http://deb.debian.org/debian buster/main amd64 r-base-dev all 3.5.2-1 [4480 B] Get: 150 http://deb.debian.org/debian buster/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get: 151 http://deb.debian.org/debian buster/main amd64 libswitch-perl all 2.17-2 [20.5 kB] Get: 152 http://deb.debian.org/debian buster/main amd64 dh-r all 20190121 [35.1 kB] Get: 153 http://deb.debian.org/debian buster/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get: 154 http://deb.debian.org/debian buster/main amd64 libllvm6.0 amd64 1:6.0.1-10 [14.7 MB] Get: 155 http://deb.debian.org/debian buster/main amd64 libclang1-6.0 amd64 1:6.0.1-10 [6951 kB] Get: 156 http://deb.debian.org/debian buster/main amd64 doxygen amd64 1.8.13-10 [3985 kB] Get: 157 http://deb.debian.org/debian buster/main amd64 fonts-mathjax all 2.7.4+dfsg-1 [2209 kB] Get: 158 http://deb.debian.org/debian buster/main amd64 libexpat1-dev amd64 2.2.6-2+deb10u1 [153 kB] Get: 159 http://deb.debian.org/debian buster/main amd64 libjs-mathjax all 2.7.4+dfsg-1 [5658 kB] Get: 160 http://deb.debian.org/debian buster/main amd64 libpython2.7 amd64 2.7.16-2+deb10u1 [1036 kB] Get: 161 http://deb.debian.org/debian buster/main amd64 libpython2.7-dev amd64 2.7.16-2+deb10u1 [31.6 MB] Get: 162 http://deb.debian.org/debian buster/main amd64 libpython2-dev amd64 2.7.16-1 [20.9 kB] Get: 163 http://deb.debian.org/debian buster/main amd64 libpython-dev amd64 2.7.16-1 [20.9 kB] Get: 164 http://deb.debian.org/debian buster/main amd64 libpython3.7 amd64 3.7.3-2+deb10u3 [1498 kB] Get: 165 http://deb.debian.org/debian buster/main amd64 libpython3.7-dev amd64 3.7.3-2+deb10u3 [48.4 MB] Get: 166 http://deb.debian.org/debian buster/main amd64 libpython3-dev amd64 3.7.3-1 [20.1 kB] Get: 167 http://deb.debian.org/debian buster/main amd64 r-cran-littler amd64 0.3.6-1 [308 kB] Get: 168 http://deb.debian.org/debian buster/main amd64 littler all 0.3.6-1 [13.6 kB] Get: 169 http://deb.debian.org/debian buster/main amd64 python2.7-dev amd64 2.7.16-2+deb10u1 [294 kB] Get: 170 http://deb.debian.org/debian buster/main amd64 python2-dev amd64 2.7.16-1 [1212 B] Get: 171 http://deb.debian.org/debian buster/main amd64 python-dev amd64 2.7.16-1 [1192 B] Get: 172 http://deb.debian.org/debian buster/main amd64 python-pkg-resources all 40.8.0-1 [182 kB] Get: 173 http://deb.debian.org/debian buster/main amd64 python-setuptools all 40.8.0-1 [382 kB] Get: 174 http://deb.debian.org/debian buster/main amd64 python3-cffi-backend amd64 1.12.2-1 [79.7 kB] Get: 175 http://deb.debian.org/debian buster/main amd64 python3-ply all 3.11-3 [65.1 kB] Get: 176 http://deb.debian.org/debian buster/main amd64 python3-pycparser all 2.19-1 [75.6 kB] Get: 177 http://deb.debian.org/debian buster/main amd64 python3-cffi all 1.12.2-1 [83.3 kB] Get: 178 http://deb.debian.org/debian buster/main amd64 python3.7-dev amd64 3.7.3-2+deb10u3 [510 kB] Get: 179 http://deb.debian.org/debian buster/main amd64 python3-dev amd64 3.7.3-1 [1264 B] Get: 180 http://deb.debian.org/debian buster/main amd64 python3-pkg-resources all 40.8.0-1 [153 kB] Get: 181 http://deb.debian.org/debian buster/main amd64 python3-setuptools all 40.8.0-1 [306 kB] Get: 182 http://deb.debian.org/debian buster/main amd64 r-cran-pkgkitten all 0.1.4-2 [22.4 kB] Get: 183 http://deb.debian.org/debian buster/main amd64 r-cran-rcpp amd64 1.0.0-1 [3381 kB] Fetched 218 MB in 7s (31.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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Setting up libpython3.7:amd64 (3.7.3-2+deb10u3) ... Setting up libtool (2.4.6-9) ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up libpcre3-dev:amd64 (2:8.39-12) ... Setting up gfortran-8 (8.3.0-6) ... Setting up libpython3.7-dev:amd64 (3.7.3-2+deb10u3) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up libpng-dev:amd64 (1.6.36-6) ... Setting up libjpeg-dev (1:1.5.2-2+deb10u1) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u6) ... Setting up m4 (1.4.18-2) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up libreadline-dev:amd64 (7.0-5) ... Setting up libllvm6.0:amd64 (1:6.0.1-10) ... Setting up gfortran (4:8.3.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libclang1-6.0:amd64 (1:6.0.1-10) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Setting up libthai0:amd64 (0.1.28-2) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 137 added, 0 removed; done. Setting up libblas3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode Setting up doxygen (1.8.13-10) ... Setting up libfreetype6:amd64 (2.9.1-3+deb10u2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u3) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up libncurses5-dev:amd64 (6.1+20181013-2+deb10u2) ... Setting up libcurl4:amd64 (7.64.0-4+deb10u2) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libxmuu1:amd64 (2:1.1.2-2+b3) ... Setting up libblas-dev:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/blas/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpaper1:amd64 (1.1.28) ... Creating config file /etc/papersize with new version Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up libpython2.7:amd64 (2.7.16-2+deb10u1) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up libpython2.7-dev:amd64 (2.7.16-2+deb10u1) ... Setting up gettext (0.19.8.1-9) ... Setting up libpython3-dev:amd64 (3.7.3-1) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up python3 (3.7.3-1) ... Setting up libpaper-utils (1.1.28) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up python3.7-dev (3.7.3-2+deb10u3) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up liblapack-dev:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode Setting up libxt6:amd64 (1:1.1.5-1+b3) ... Setting up xauth (1:1.0.10-1) ... Setting up libpython2-dev:amd64 (2.7.16-1) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python (2.7.16-1) ... Setting up python3-cffi-backend (1.12.2-1) ... Setting up python2.7-dev (2.7.16-2+deb10u1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.2-2) ... Setting up python2-dev (2.7.16-1) ... Setting up python3-setuptools (40.8.0-1) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up po-debconf (1.0.21) ... Setting up libtk8.6:amd64 (8.6.9-2) ... Setting up python3-ply (3.11-3) ... Setting up libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libcairo2:amd64 (1.16.0-4+deb10u1) ... Setting up python3-pycparser (2.19-1) ... Setting up libpython-dev:amd64 (2.7.16-1) ... Setting up python3-dev (3.7.3-1) ... Setting up python-setuptools (40.8.0-1) ... Setting up libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up python-dev (2.7.16-1) ... Setting up python3-cffi (1.12.2-1) ... Setting up r-base-core (3.5.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-pkgkitten (0.1.4-2) ... Setting up r-cran-littler (0.3.6-1) ... Setting up r-cran-rcpp (1.0.0-1) ... Setting up r-base-dev (3.5.2-1) ... Setting up littler (0.3.6-1) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up dh-r (20190121) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/isospec-1.9.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../isospec_1.9.1-5_source.changes dpkg-buildpackage: info: source package isospec dpkg-buildpackage: info: source version 1.9.1-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Filippo Rusconi dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild --sourcedirectory=IsoSpecPy dh_auto_clean -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy pybuild --clean -i python{version} -p 2.7 --dir IsoSpecPy I: pybuild base:217: python2.7 setup.py clean running clean removing '/build/isospec-1.9.1/.pybuild/cpython2_2.7_isospec/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it pybuild --clean -i python{version} -p 3.7 --dir IsoSpecPy I: pybuild base:217: python3.7 setup.py clean running clean removing '/build/isospec-1.9.1/.pybuild/cpython3_3.7_isospec/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy dh_clean -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/libisospec\+\+-dev.substvars debian/libisospec\+\+1.substvars debian/libisospec\+\+-doc.substvars debian/r-cran-isospec.substvars debian/python3-isospec.substvars debian/files rm -fr -- debian/libisospec\+\+-dev/ debian/tmp/ debian/libisospec\+\+1/ debian/libisospec\+\+-doc/ debian/r-cran-isospec/ debian/python3-isospec/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build dh build --with python3 --buildsystem=pybuild --sourcedirectory=IsoSpecPy dh_update_autotools_config -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy dh_autoreconf -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy dh_auto_configure -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy pybuild --configure -i python{version} -p 2.7 --dir IsoSpecPy I: pybuild base:217: python2.7 setup.py config running config pybuild --configure -i python{version} -p 3.7 --dir IsoSpecPy I: pybuild base:217: python3.7 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/isospec-1.9.1' cd IsoSpec++ && make make[2]: Entering directory '/build/isospec-1.9.1/IsoSpec++' g++ -std=c++11 -O0 -g -Wall -pedantic -Wextra -O3 -mtune=native unity-build.cpp -fPIC -shared -o libIsoSpec++.so.1.9.1 -Wl,-soname,libIsoSpec++.so.1 make[2]: Leaving directory '/build/isospec-1.9.1/IsoSpec++' cp debian/doxyfile man doxygen man/doxyfile warning: ignoring unsupported tag `CLANG_COMPILATION_DATABASE_PATH=' at line 1102, file man/doxyfile warning: ignoring unsupported tag `HTML_DYNAMIC_MENUS =' at line 1267, file man/doxyfile Searching for include files... Searching for example files... Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /build/isospec-1.9.1/IsoSpec++ Reading and parsing tag files Parsing files Preprocessing /build/isospec-1.9.1/IsoSpec++/allocator.cpp... Parsing file /build/isospec-1.9.1/IsoSpec++/allocator.cpp... Preprocessing /build/isospec-1.9.1/IsoSpec++/allocator.h... Parsing file /build/isospec-1.9.1/IsoSpec++/allocator.h... Preprocessing /build/isospec-1.9.1/IsoSpec++/conf.h... Parsing file /build/isospec-1.9.1/IsoSpec++/conf.h... Preprocessing /build/isospec-1.9.1/IsoSpec++/cwrapper.cpp... Parsing file /build/isospec-1.9.1/IsoSpec++/cwrapper.cpp... Preprocessing /build/isospec-1.9.1/IsoSpec++/cwrapper.h... Parsing file /build/isospec-1.9.1/IsoSpec++/cwrapper.h... Preprocessing /build/isospec-1.9.1/IsoSpec++/dirtyAllocator.cpp... Parsing file /build/isospec-1.9.1/IsoSpec++/dirtyAllocator.cpp... Preprocessing /build/isospec-1.9.1/IsoSpec++/dirtyAllocator.h... Parsing file /build/isospec-1.9.1/IsoSpec++/dirtyAllocator.h... Preprocessing /build/isospec-1.9.1/IsoSpec++/element_tables.cpp... Parsing file /build/isospec-1.9.1/IsoSpec++/element_tables.cpp... Preprocessing /build/isospec-1.9.1/IsoSpec++/element_tables.h... Parsing file /build/isospec-1.9.1/IsoSpec++/element_tables.h... Preprocessing /build/isospec-1.9.1/IsoSpec++/isoMath.cpp... Parsing file /build/isospec-1.9.1/IsoSpec++/isoMath.cpp... Preprocessing /build/isospec-1.9.1/IsoSpec++/isoMath.h... Parsing file /build/isospec-1.9.1/IsoSpec++/isoMath.h... Preprocessing /build/isospec-1.9.1/IsoSpec++/isoSpec++.cpp... Parsing file /build/isospec-1.9.1/IsoSpec++/isoSpec++.cpp... Preprocessing /build/isospec-1.9.1/IsoSpec++/isoSpec++.h... Parsing file /build/isospec-1.9.1/IsoSpec++/isoSpec++.h... Preprocessing /build/isospec-1.9.1/IsoSpec++/marginalTrek++.cpp... Parsing file /build/isospec-1.9.1/IsoSpec++/marginalTrek++.cpp... Preprocessing /build/isospec-1.9.1/IsoSpec++/marginalTrek++.h... Parsing file /build/isospec-1.9.1/IsoSpec++/marginalTrek++.h... Preprocessing /build/isospec-1.9.1/IsoSpec++/misc.cpp... Parsing file /build/isospec-1.9.1/IsoSpec++/misc.cpp... Preprocessing /build/isospec-1.9.1/IsoSpec++/misc.h... Parsing file /build/isospec-1.9.1/IsoSpec++/misc.h... Preprocessing /build/isospec-1.9.1/IsoSpec++/mman.c... Parsing file /build/isospec-1.9.1/IsoSpec++/mman.c... Preprocessing /build/isospec-1.9.1/IsoSpec++/mman.h... Parsing file /build/isospec-1.9.1/IsoSpec++/mman.h... Preprocessing /build/isospec-1.9.1/IsoSpec++/operators.cpp... Parsing file /build/isospec-1.9.1/IsoSpec++/operators.cpp... Preprocessing /build/isospec-1.9.1/IsoSpec++/operators.h... Parsing file /build/isospec-1.9.1/IsoSpec++/operators.h... Preprocessing /build/isospec-1.9.1/IsoSpec++/platform.h... Parsing file /build/isospec-1.9.1/IsoSpec++/platform.h... Preprocessing /build/isospec-1.9.1/IsoSpec++/summator.h... Parsing file /build/isospec-1.9.1/IsoSpec++/summator.h... Preprocessing /build/isospec-1.9.1/IsoSpec++/tabulator.cpp... Parsing file /build/isospec-1.9.1/IsoSpec++/tabulator.cpp... Preprocessing /build/isospec-1.9.1/IsoSpec++/tabulator.h... Parsing file /build/isospec-1.9.1/IsoSpec++/tabulator.h... Preprocessing /build/isospec-1.9.1/IsoSpec++/unity-build.cpp... Parsing file /build/isospec-1.9.1/IsoSpec++/unity-build.cpp... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Associating documentation with classes... Computing nesting relations for classes... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class u/build/isospec-1.9.1/IsoSpec++/operators.h:131: warning: Compound IsoSpec::OrderMarginalsBySizeDecresing is not documented. /build/isospec-1.9.1/IsoSpec++/operators.h:79: warning: Compound IsoSpec::ConfOrderMarginal is not documented. /build/isospec-1.9.1/IsoSpec++/summator.h:26: warning: Compound IsoSpec::SSummator is not documented. /build/isospec-1.9.1/IsoSpec++/operators.h:28: warning: Compound IsoSpec::KeyHasher is not documented. /build/isospec-1.9.1/IsoSpec++/summator.h:76: warning: Compound IsoSpec::Summator is not documented. /build/isospec-1.9.1/IsoSpec++/operators.h:67: warning: Compound IsoSpec::ConfOrder is not documented. /build/isospec-1.9.1/IsoSpec++/summator.h:100: warning: Compound IsoSpec::TSummator is not documented. /build/isospec-1.9.1/IsoSpec++/operators.h:114: warning: Compound IsoSpec::TableOrder is not documented. /build/isospec-1.9.1/IsoSpec++/dirtyAllocator.h:26: warning: Compound IsoSpec::DirtyAllocator is not documented. /build/isospec-1.9.1/IsoSpec++/operators.h:93: warning: Compound IsoSpec::ConfOrderMarginalDescending is not documented. /build/isospec-1.9.1/IsoSpec++/operators.h:46: warning: Compound IsoSpec::ConfEqual is not documented. /build/isospec-1.9.1/IsoSpec++/allocator.h:34: warning: Compound IsoSpec::Allocator is not documented. /build/isospec-1.9.1/IsoSpec++/operators.h:107: warning: Compound IsoSpec::ReverseOrder is not documented. /build/isospec-1.9.1/IsoSpec++/tabulator.h:13: warning: Compound IsoSpec::Tabulator is not documented. /build/isospec-1.9.1/IsoSpec++/conf.h:22: warning: Member Conf (typedef) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/allocator.h:27: warning: Member copyConf(const T *source, T *destination, int dim) (function) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/isoMath.cpp:19: warning: Member release_g_lfact_table() (function) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/isoMath.cpp:28: warning: Member alloc_lfact_table() (function) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/isoMath.cpp:43: warning: Member RationalApproximation(double t) (function) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/isoMath.cpp:53: warning: Member NormalCDFInverse(double p) (function) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/isoMath.cpp:62: warning: Member NormalCDFInverse(double p, double mean, double stdev) (function) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/isoMath.cpp:67: warning: Member NormalCDF(double x, double mean, double stdev) (function) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/isoMath.cpp:92: warning: Member NormalPDF(double x, double mean, double stdev) (function) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/isoSpec++.cpp:185: warning: Member parse_formula(const char *formula, std::vector< const double *> &isotope_masses, std::vector< const double *> &isotope_probabilities, int **isotopeNumbers, int **atomCounts, unsigned int *confSize) (function) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/isoSpec++.cpp:547: warning: Member printConfigurations(const std::tuple< double *, double *, int *, int > &results, int dimNumber, int *isotopeNumbers) (function) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/marginalTrek++.cpp:133: warning: Member printMarginal(const std::tuple< double *, double *, int *, int > &results, int dim) (function) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/marginalTrek++.cpp:176: warning: Member get_loggamma_nominator(int x) (function) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/marginalTrek++.h:32: warning: Member initialConfigure(int atomCnt, int isotopeNo, const double *probs) (function) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/misc.h:28: warning: Member combinedSum(const int *conf, const std::vector< double > **valuesContainer, int dimNumber) (function) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/misc.h:37: warning: Member getConf(void *conf) (function) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/misc.h:44: warning: Member getLProb(void *conf) (function) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/misc.h:51: warning: Member unnormalized_logProb(const int *conf, const double *logProbs, int dim) (function) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/misc.h:72: warning: Member mass(const int *conf, const double *masses, int dim) (function) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/misc.h:85: warning: Member tupleCmp(std::tuple< double, double, int *> t1, std::tuple< double, double, int *> t2) (function) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/misc.h:92: warning: Member printArray(const T *array, int size) (function) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/misc.h:99: warning: Member printVector(const std::vector< T > &vec) (function) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/misc.h:105: warning: Member printNestedArray(const T **array, const int *shape, int size) (function) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/misc.h:126: warning: Member dealloc_table(T *tbl, int dim) (function) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/tabulator.h:34: warning: Member reallocate(double **array, int new_size) (function) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/element_tables.cpp:26: warning: Member elem_table_atomicNo[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/element_tables.cpp:318: warning: Member elem_table_mass[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/element_tables.cpp:610: warning: Member elem_table_massNo[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/element_tables.cpp:902: warning: Member elem_table_extraNeutrons[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/element_tables.cpp:1194: warning: Member elem_table_element[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/element_tables.cpp:1486: warning: Member elem_table_symbol[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/element_tables.cpp:1778: warning: Member elem_table_Radioactive[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/element_tables.cpp:2070: warning: Member elem_table_probability[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/element_tables.cpp:2362: warning: Member elem_table_log_probability[ISOSPEC_NUMBER_OF_ISOTOPIC_ENTRIES] (variable) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/isoMath.cpp:17: warning: Member pi (variable) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/isoMath.cpp:40: warning: Member g_lfact_table (variable) of namespace IsoSpec is not documented. /build/isospec-1.9.1/IsoSpec++/marginalTrek++.cpp:55: warning: The following parameters of IsoSpec::initialConfigure(const int atomCnt, const int isotopeNo, const double *probs, const double *lprobs) are not documented: parameter 'isotopeNo' parameter 'probs' parameter 'lprobs' /build/isospec-1.9.1/IsoSpec++/allocator.h:41: warning: Member Allocator(const int dim, const int tabSize=10000) (function) of class IsoSpec::Allocator is not documented. /build/isospec-1.9.1/IsoSpec++/allocator.h:44: warning: Member shiftTables() (function) of class IsoSpec::Allocator is not documented. /build/isospec-1.9.1/IsoSpec++/allocator.h:46: warning: Member newConf() (function) of class IsoSpec::Allocator is not documented. /build/isospec-1.9.1/IsoSpec++/allocator.h:56: warning: Member makeCopy(const T *conf) (function) of class IsoSpec::Allocator is not documented. /build/isospec-1.9.1/IsoSpec++/allocator.h:64: warning: Member makeExternalCopy(const T *conf) (function) of class IsoSpec::Allocator is not documented. /build/isospec-1.9.1/IsoSpec++/operators.h:50: warning: Member ConfEqual(int dim) (function) of class IsoSpec::ConfEqual is not documented. /build/isospec-1.9.1/IsoSpec++/operators.h:52: warning: Member operator()(const int *conf1, const int *conf2) const (function) of class IsoSpec::ConfEqual is not documented. /build/isospec-1.9.1/IsoSpec++/operators.h:70: warning: Member operator()(void *conf1, void *conf2) const (function) of class IsoSpec::ConfOrder is not documented. /build/isospec-1.9.1/IsoSpec++/operators.h:84: warning: Member ConfOrderMarginal(const double *logProbs, int dim) (function) of class IsoSpec::ConfOrderMarginal is not documented. /build/isospec-1.9.1/IsoSpec++/operators.h:86: warning: Member operator()(const Conf conf1, const Conf conf2) (function) of class IsoSpec::ConfOrderMarginal is not documented. /build/isospec-1.9.1/IsoSpec++/operators.h:98: warning: Member ConfOrderMarginalDescending(const double *logProbs, int dim) (function) of class IsoSpec::ConfOrderMarginalDescending is not documented. /build/isospec-1.9.1/IsoSpec++/operators.h:100: warning: Member operator()(const Conf conf1, const Conf conf2) (function) of class IsoSpec::ConfOrderMarginalDescending is not documented. /build/isospec-1.9.1/IsoSpec++/dirtyAllocator.h:35: warning: Member DirtyAllocator(const int dim, const int tabSize=10000) (function) of class IsoSpec::DirtyAllocator is not documented. /build/isospec-1.9.1/IsoSpec++/dirtyAllocator.h:38: warning: Member shiftTables() (function) of class IsoSpec::DirtyAllocator is not documented. /build/isospec-1.9.1/IsoSpec++/dirtyAllocator.h:40: warning: Member newConf() (function) of class IsoSpec::DirtyAllocator is not documented. /build/isospec-1.9.1/IsoSpec++/dirtyAllocator.h:53: warning: Member makeCopy(const void *conf) (function) of class IsoSpec::DirtyAllocator is not documented. /build/isospec-1.9.1/IsoSpec++/dirtyAllocator.h:62: warning: Member makeExternalCopy(const void *conf) (function) of class IsoSpec::DirtyAllocator is not documented. sh: 1: epstopdf: not found error: Problems running epstopdf. Check your TeX installation! sh: 1: epstopdf: not found error: Problems running epstopdf. Check your TeX installation! /build/isospec-1.9.1/IsoSpec++/isoSpec++.h:162: warning: Member get_conf_signature(int *space) const =0 (function) of class IsoSpec::IsoGenerator is not documented. sh: 1: epstopdf: not found error: Problems running epstopdf. Check your TeX installation! /build/isospec-1.9.1/IsoSpec++/isoSpec++.h:408: warning: Member get_conf_signature(int *space) const override final (function) of class IsoSpec::IsoLayeredGenerator is not documented. /build/isospec-1.9.1/IsoSpec++/isoSpec++.h:419: warning: Member IsoLayeredGenerator(Iso &&iso, double _targetCoverage, double _percentageToExpand=0.3, int _tabSize=1000, int _hashSize=1000, bool trim=false) (function) of class IsoSpec::IsoLayeredGenerator is not documented. /build/isospec-1.9.1/IsoSpec++/isoSpec++.h:422: warning: Member terminate_search() (function) of class IsoSpec::IsoLayeredGenerator is not documented. sh: 1: epstopdf: not found error: Problems running epstopdf. Check your TeX installation! sh: 1: epstopdf: not found error: Problems running epstopdf. Check your TeX installation! /build/isospec-1.9.1/IsoSpec++/isoSpec++.h:253: warning: Member get_conf_signature(int *space) const override final (function) of class IsoSpec::IsoThresholdGenerator is not documented. /build/isospec-1.9.1/IsoSpec++/isoSpec++.h:274: warning: argument 'tabSize' of command @param is not found in the argument list of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) /build/isospec-1.9.1/IsoSpec++/isoSpec++.h:274: warning: argument 'hashSize' of command @param is not found in the argument list of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) /build/isospec-1.9.1/IsoSpec++/isoSpec++.h:281: warning: The following parameters of IsoSpec::IsoThresholdGenerator::IsoThresholdGenerator(Iso &&iso, double _threshold, bool _absolute=true, int _tabSize=1000, int _hashSize=1000, bool reorder_marginals=true) are not documented: parameter '_tabSize' parameter '_hashSize' parameter 'reorder_marginals' /build/isospec-1.9.1/IsoSpec++/operators.h:32: warning: Member KeyHasher(int dim) (function) of class IsoSpec::KeyHasher is not documented. /build/isospec-1.9.1/IsoSpec++/operators.h:34: warning: Member operator()(const int *conf) const (function) of class IsoSpec::KeyHasher is not documented. sh: 1: epstopdf: not found error: Problems running epstopdf. Check your TeX installation! sh: 1: epstopdf: not found error: Problems running epstopdf. Check your TeX installation! /build/isospec-1.9.1/IsoSpec++/marginalTrek++.h:195: warning: Member conf_lprobs() const (function) of class IsoSpec::MarginalTrek is not documented. /build/isospec-1.9.1/IsoSpec++/marginalTrek++.h:196: warning: Member conf_masses() const (function) of class IsoSpec::MarginalTrek is not documented. /build/isospec-1.9.1/IsoSpec++/marginalTrek++.h:197: warning: Member confs() const (function) of class IsoSpec::MarginalTrek is not documented. /build/isospec-1.9.1/IsoSpec++/marginalTrek++.h:166: warning: The following parameters of IsoSpec::MarginalTrek::MarginalTrek(Marginal &&m, int tabSize=1000, int hashSize=1000) are not documented: parameter 'm' /build/isospec-1.9.1/IsoSpec++/operators.h:134: warning: Member OrderMarginalsBySizeDecresing(PrecalculatedMarginal const *const *const _T) (function) of class IsoSpec::OrderMarginalsBySizeDecresing is not documented. /build/isospec-1.9.1/IsoSpec++/operators.h:135: warning: Member operator()(int m1, int m2) (function) of class IsoSpec::OrderMarginalsBySizeDecresing is not documented. sh: 1: epstopdf: not found error: Problems running epstopdf. Check your TeX installation! /build/isospec-1.9.1/IsoSpec++/marginalTrek++.h:216: warning: Member configurations (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-1.9.1/IsoSpec++/marginalTrek++.h:217: warning: Member confs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-1.9.1/IsoSpec++/marginalTrek++.h:218: warning: Member no_confs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-1.9.1/IsoSpec++/marginalTrek++.h:219: warning: Member masses (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-1.9.1/IsoSpec++/marginalTrek++.h:220: warning: Member lProbs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-1.9.1/IsoSpec++/marginalTrek++.h:221: warning: Member probs (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-1.9.1/IsoSpec++/marginalTrek++.h:222: warning: Member allocator (variable) of class IsoSpec::PrecalculatedMarginal is not documented. /build/isospec-1.9.1/IsoSpec++/marginalTrek++.h:226: warning: argument 'Marginal' of command @param is not found in the argument list of IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal(Marginal &&m, double lCutOff, bool sort=true, int tabSize=1000, int hashSize=1000) /build/isospec-1.9.1/IsoSpec++/marginalTrek++.h:232: warning: The following parameters of IsoSpec::PrecalculatedMarginal::PrecalculatedMarginal(Marginal &&m, double lCutOff, bool sort=true, int tabSize=1000, int hashSize=1000) are not documented: parameter 'm' parameter 'tabSize' parameter 'hashSize' /build/isospec-1.9.1/IsoSpec++/operators.h:110: warning: Member operator()(const T a, const T b) const (function) of class IsoSpec::ReverseOrder is not documented. /build/isospec-1.9.1/IsoSpec++/summator.h:34: warning: Member SSummator(SSummator &other) (function) of class IsoSpec::SSummator is not documented. /build/isospec-1.9.1/IsoSpec++/summator.h:39: warning: Member add(double x) (function) of class IsoSpec::SSummator is not documented. /build/isospec-1.9.1/IsoSpec++/summator.h:61: warning: Member get() (function) of class IsoSpec::SSummator is not documented. /build/isospec-1.9.1/IsoSpec++/summator.h:85: warning: Member add(double what) (function) of class IsoSpec::Summator is not documented. /build/isospec-1.9.1/IsoSpec++/summator.h:93: warning: Member get() (function) of class IsoSpec::Summator is not documented. /build/isospec-1.9.1/IsoSpec++/operators.h:117: warning: Member TableOrder(const T *_tbl) (function) of class IsoSpec::TableOrder is not documented. /build/isospec-1.9.1/IsoSpec++/operators.h:118: warning: Member operator()(unsigned int i, unsigned int j) (function) of class IsoSpec::TableOrder is not documented. /build/isospec-1.9.1/IsoSpec++/tabulator.h:21: warning: Member Tabulator(T *generator, bool get_masses, bool get_probs, bool get_lprobs, bool get_confs) (function) of class IsoSpec::Tabulator is not documented. /build/isospec-1.9.1/IsoSpec++/tabulator.h:27: warning: Member masses(bool release=false) (function) of class IsoSpec::Tabulator is not documented. /build/isospec-1.9.1/IsoSpec++/tabulator.h:28: warning: Member lprobs(bool release=false) (function) of class IsoSpec::Tabulator is not documented. /build/isospec-1.9.1/IsoSpec++/tabulator.h:29: warning: Member probs(bool release=false) (function) of class IsoSpec::Tabulator is not documented. /build/isospec-1.9.1/IsoSpec++/tabulator.h:30: warning: Member confs(bool release=false) (function) of class IsoSpec::Tabulator is not documented. /build/isospec-1.9.1/IsoSpec++/tabulator.h:31: warning: Member confs_no() (function) of class IsoSpec::Tabulator is not documented. /build/isospec-1.9.1/IsoSpec++/summator.h:107: warning: Member add(double what) (function) of class IsoSpec::TSummator is not documented. /build/isospec-1.9.1/IsoSpec++/summator.h:111: warning: Member get() (function) of class IsoSpec::TSummator is not documented. sage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Freeing entry tree Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Computing dependencies between directories... Generating citations page... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file IsoSpec++/allocator.cpp... Generating code for file IsoSpec++/allocator.h... Generating code for file IsoSpec++/conf.h... Generating code for file IsoSpec++/cwrapper.cpp... Generating code for file IsoSpec++/cwrapper.h... Generating code for file IsoSpec++/dirtyAllocator.cpp... Generating code for file IsoSpec++/dirtyAllocator.h... Generating code for file IsoSpec++/element_tables.cpp... Generating code for file IsoSpec++/element_tables.h... Generating code for file IsoSpec++/isoMath.cpp... Generating code for file IsoSpec++/isoMath.h... Generating code for file IsoSpec++/isoSpec++.cpp... Generating code for file IsoSpec++/isoSpec++.h... Generating code for file IsoSpec++/marginalTrek++.cpp... Generating code for file IsoSpec++/marginalTrek++.h... Generating code for file IsoSpec++/misc.cpp... Generating code for file IsoSpec++/misc.h... Generating code for file IsoSpec++/mman.c... Generating code for file IsoSpec++/mman.h... Generating code for file IsoSpec++/operators.cpp... Generating code for file IsoSpec++/operators.h... Generating code for file IsoSpec++/platform.h... Generating code for file IsoSpec++/summator.h... Generating code for file IsoSpec++/tabulator.cpp... Generating code for file IsoSpec++/tabulator.h... Generating code for file IsoSpec++/unity-build.cpp... Generating file documentation... Generating page documentation... Generating group documentation... Generating class documentation... Generating namespace index... Generating docs for namespace IsoSpec Generating docs for compound IsoSpec::Allocator... Generating docs for compound IsoSpec::ConfEqual... Generating docs for compound IsoSpec::ConfOrder... Generating docs for compound IsoSpec::ConfOrderMarginal... Generating docs for compound IsoSpec::ConfOrderMarginalDescending... Generating docs for compound IsoSpec::DirtyAllocator... Generating docs for compound IsoSpec::Iso... Generating docs for compound IsoSpec::IsoGenerator... Generating docs for compound IsoSpec::IsoLayeredGenerator... Generating docs for compound IsoSpec::IsoOrderedGenerator... Generating docs for compound IsoSpec::IsoThresholdGenerator... Generating docs for compound IsoSpec::KeyHasher... Generating docs for compound IsoSpec::Marginal... Generating docs for compound IsoSpec::MarginalTrek... Generating docs for compound IsoSpec::OrderMarginalsBySizeDecresing... Generating docs for compound IsoSpec::PrecalculatedMarginal... Generating docs for compound IsoSpec::ReverseOrder... Generating docs for compound IsoSpec::SSummator... Generating docs for compound IsoSpec::Summator... Generating docs for compound IsoSpec::TableOrder... Generating docs for compound IsoSpec::Tabulator... Generating docs for compound IsoSpec::TSummator... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... lookup cache used 731/65536 hits=4821 misses=770 finished... #rm man/man/man3/_home_rusconi_* sh debian/replace-mathjax-cloudflare-url-local-file.sh make[1]: Leaving directory '/build/isospec-1.9.1' dh_auto_test -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy pybuild --test -i python{version} -p 2.7 --dir IsoSpecPy I: pybuild base:217: cd /build/isospec-1.9.1/.pybuild/cpython2_2.7_isospec/build; python2.7 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK pybuild --test -i python{version} -p 3.7 --dir IsoSpecPy I: pybuild base:217: cd /build/isospec-1.9.1/.pybuild/cpython3_3.7_isospec/build; python3.7 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3 --buildsystem=pybuild --sourcedirectory=IsoSpecPy dh_testroot -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy dh_prep -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy rm -f -- debian/libisospec\+\+-dev.substvars debian/libisospec\+\+1.substvars debian/libisospec\+\+-doc.substvars debian/r-cran-isospec.substvars debian/python3-isospec.substvars rm -fr -- debian/.debhelper/generated/libisospec\+\+-dev/ debian/libisospec\+\+-dev/ debian/tmp/ debian/.debhelper/generated/libisospec\+\+1/ debian/libisospec\+\+1/ debian/.debhelper/generated/libisospec\+\+-doc/ debian/libisospec\+\+-doc/ debian/.debhelper/generated/r-cran-isospec/ debian/r-cran-isospec/ debian/.debhelper/generated/python3-isospec/ debian/python3-isospec/ dh_installdirs -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy install -d debian/libisospec\+\+-dev/usr/lib debian/libisospec\+\+-dev/usr/include/IsoSpec\+\+ install -d debian/libisospec\+\+1/usr/lib install -d debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc/html debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc/examples debian/rules override_dh_auto_install make[1]: Entering directory '/build/isospec-1.9.1' dh_auto_install -O--buildsystem=R --sourcedirectory=IsoSpecR install -d /build/isospec-1.9.1/debian/tmp I: R Package: IsoSpecR Version: 1.9.1 I: Building using R version 3.5.2-1 I: R API version: r-api-3.5 I: Using built-time from d/changelog: Wed, 06 Mar 2019 17:23:44 +0100 cd IsoSpecR && mkdir -p /build/isospec-1.9.1/debian/tmp/usr/lib/R/site-library cd IsoSpecR && R CMD INSTALL -l /build/isospec-1.9.1/debian/tmp/usr/lib/R/site-library --clean . "--built-timestamp='Wed, 06 Mar 2019 17:23:44 +0100'" * installing *source* package ‘IsoSpecR’ ... ** libs make[2]: Entering directory '/build/isospec-1.9.1/IsoSpecR/src' gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c IsoSpecR_init.c -o IsoSpecR_init.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c RcppExports.cpp -o RcppExports.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c Rinterface.cpp -o Rinterface.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c allocator.cpp -o allocator.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c cwrapper.cpp -o cwrapper.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c dirtyAllocator.cpp -o dirtyAllocator.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c element_tables.cpp -o element_tables.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c isoMath.cpp -o isoMath.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c isoSpec++.cpp -o isoSpec++.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c marginalTrek++.cpp -o marginalTrek++.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c misc.cpp -o misc.o gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c mman.c -o mman.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c operators.cpp -o operators.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c tabulator.cpp -o tabulator.o g++ -std=gnu++11 -I"/usr/share/R/include" -DNDEBUG -I"/usr/lib/R/site-library/Rcpp/include" -fpic -g -O2 -fdebug-prefix-map=/build/r-base-3.5.2=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g -c unity-build.cpp -o unity-build.o g++ -std=gnu++11 -shared -L/usr/lib/R/lib -Wl,-z,relro -o IsoSpecR.so IsoSpecR_init.o RcppExports.o Rinterface.o allocator.o cwrapper.o dirtyAllocator.o element_tables.o isoMath.o isoSpec++.o marginalTrek++.o misc.o mman.o operators.o tabulator.o unity-build.o -L/usr/lib/R/lib -lR make[2]: Leaving directory '/build/isospec-1.9.1/IsoSpecR/src' make[2]: Entering directory '/build/isospec-1.9.1/IsoSpecR/src' make[2]: Leaving directory '/build/isospec-1.9.1/IsoSpecR/src' installing to /build/isospec-1.9.1/debian/tmp/usr/lib/R/site-library/IsoSpecR/libs ** R ** data ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** testing if installed package can be loaded * DONE (IsoSpecR) Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 292. Use of uninitialized value $dep_line in substitution (s///) at /usr/share/perl5/Dpkg/Deps.pm line 293. Use of uninitialized value $dep_line in split at /usr/share/perl5/Dpkg/Deps.pm line 296. W: Ignoring specified R dependency: R (>= 3.0.0) I: Using r-cran-rcpp for Imports:Rcpp (>= 0.12.0) rm debian/tmp/usr/lib/R/site-library/IsoSpecR/LICENCE mv debian/tmp tmp-install dh_auto_install install -d /build/isospec-1.9.1/debian/tmp pybuild --install -i python{version} -p 2.7 --dir IsoSpecPy --dest-dir /build/isospec-1.9.1/debian/tmp I: pybuild base:217: /usr/bin/python setup.py install --root /build/isospec-1.9.1/debian/python-isospec running install running build running build_py creating /build/isospec-1.9.1/.pybuild/cpython2_2.7_isospec/build/IsoSpecPy copying IsoSpecPy/isoFFI.py -> /build/isospec-1.9.1/.pybuild/cpython2_2.7_isospec/build/IsoSpecPy copying IsoSpecPy/confs_passthrough.py -> /build/isospec-1.9.1/.pybuild/cpython2_2.7_isospec/build/IsoSpecPy copying IsoSpecPy/kahan.py -> /build/isospec-1.9.1/.pybuild/cpython2_2.7_isospec/build/IsoSpecPy copying IsoSpecPy/IsoSpecPy.py -> /build/isospec-1.9.1/.pybuild/cpython2_2.7_isospec/build/IsoSpecPy copying IsoSpecPy/PeriodicTbl.py -> /build/isospec-1.9.1/.pybuild/cpython2_2.7_isospec/build/IsoSpecPy copying IsoSpecPy/__init__.py -> /build/isospec-1.9.1/.pybuild/cpython2_2.7_isospec/build/IsoSpecPy running build_ext building 'IsoSpecCppPy' extension creating build creating build/temp.linux-amd64-2.7 creating build/temp.linux-amd64-2.7/IsoSpec++ x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/isospec-1.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python2.7 -c IsoSpec++/unity-build.cpp -o build/temp.linux-amd64-2.7/IsoSpec++/unity-build.o -O3 -std=c++11 cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/isospec-1.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/IsoSpec++/unity-build.o -o /build/isospec-1.9.1/.pybuild/cpython2_2.7_isospec/build/IsoSpecCppPy.so running install_lib creating /build/isospec-1.9.1/debian/python-isospec creating /build/isospec-1.9.1/debian/python-isospec/usr creating /build/isospec-1.9.1/debian/python-isospec/usr/lib creating /build/isospec-1.9.1/debian/python-isospec/usr/lib/python2.7 creating /build/isospec-1.9.1/debian/python-isospec/usr/lib/python2.7/dist-packages copying /build/isospec-1.9.1/.pybuild/cpython2_2.7_isospec/build/IsoSpecCppPy.so -> /build/isospec-1.9.1/debian/python-isospec/usr/lib/python2.7/dist-packages creating /build/isospec-1.9.1/debian/python-isospec/usr/lib/python2.7/dist-packages/IsoSpecPy copying /build/isospec-1.9.1/.pybuild/cpython2_2.7_isospec/build/IsoSpecPy/__init__.py -> /build/isospec-1.9.1/debian/python-isospec/usr/lib/python2.7/dist-packages/IsoSpecPy copying /build/isospec-1.9.1/.pybuild/cpython2_2.7_isospec/build/IsoSpecPy/PeriodicTbl.py -> /build/isospec-1.9.1/debian/python-isospec/usr/lib/python2.7/dist-packages/IsoSpecPy copying /build/isospec-1.9.1/.pybuild/cpython2_2.7_isospec/build/IsoSpecPy/IsoSpecPy.py -> /build/isospec-1.9.1/debian/python-isospec/usr/lib/python2.7/dist-packages/IsoSpecPy copying /build/isospec-1.9.1/.pybuild/cpython2_2.7_isospec/build/IsoSpecPy/kahan.py -> /build/isospec-1.9.1/debian/python-isospec/usr/lib/python2.7/dist-packages/IsoSpecPy copying /build/isospec-1.9.1/.pybuild/cpython2_2.7_isospec/build/IsoSpecPy/confs_passthrough.py -> /build/isospec-1.9.1/debian/python-isospec/usr/lib/python2.7/dist-packages/IsoSpecPy copying /build/isospec-1.9.1/.pybuild/cpython2_2.7_isospec/build/IsoSpecPy/isoFFI.py -> /build/isospec-1.9.1/debian/python-isospec/usr/lib/python2.7/dist-packages/IsoSpecPy byte-compiling /build/isospec-1.9.1/debian/python-isospec/usr/lib/python2.7/dist-packages/IsoSpecPy/__init__.py to __init__.pyc byte-compiling /build/isospec-1.9.1/debian/python-isospec/usr/lib/python2.7/dist-packages/IsoSpecPy/PeriodicTbl.py to PeriodicTbl.pyc byte-compiling /build/isospec-1.9.1/debian/python-isospec/usr/lib/python2.7/dist-packages/IsoSpecPy/IsoSpecPy.py to IsoSpecPy.pyc byte-compiling /build/isospec-1.9.1/debian/python-isospec/usr/lib/python2.7/dist-packages/IsoSpecPy/kahan.py to kahan.pyc byte-compiling /build/isospec-1.9.1/debian/python-isospec/usr/lib/python2.7/dist-packages/IsoSpecPy/confs_passthrough.py to confs_passthrough.pyc byte-compiling /build/isospec-1.9.1/debian/python-isospec/usr/lib/python2.7/dist-packages/IsoSpecPy/isoFFI.py to isoFFI.pyc running install_egg_info running egg_info creating IsoSpecPy.egg-info writing requirements to IsoSpecPy.egg-info/requires.txt writing IsoSpecPy.egg-info/PKG-INFO writing top-level names to IsoSpecPy.egg-info/top_level.txt writing dependency_links to IsoSpecPy.egg-info/dependency_links.txt writing manifest file 'IsoSpecPy.egg-info/SOURCES.txt' reading manifest file 'IsoSpecPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'IsoSpecPy/*.dll' writing manifest file 'IsoSpecPy.egg-info/SOURCES.txt' Copying IsoSpecPy.egg-info to /build/isospec-1.9.1/debian/python-isospec/usr/lib/python2.7/dist-packages/IsoSpecPy-1.9.1.egg-info Skipping SOURCES.txt running install_scripts pybuild --install -i python{version} -p 3.7 --dir IsoSpecPy --dest-dir /build/isospec-1.9.1/debian/tmp I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/isospec-1.9.1/debian/python3-isospec running install running build running build_py creating /build/isospec-1.9.1/.pybuild/cpython3_3.7_isospec/build/IsoSpecPy copying IsoSpecPy/isoFFI.py -> /build/isospec-1.9.1/.pybuild/cpython3_3.7_isospec/build/IsoSpecPy copying IsoSpecPy/confs_passthrough.py -> /build/isospec-1.9.1/.pybuild/cpython3_3.7_isospec/build/IsoSpecPy copying IsoSpecPy/kahan.py -> /build/isospec-1.9.1/.pybuild/cpython3_3.7_isospec/build/IsoSpecPy copying IsoSpecPy/IsoSpecPy.py -> /build/isospec-1.9.1/.pybuild/cpython3_3.7_isospec/build/IsoSpecPy copying IsoSpecPy/PeriodicTbl.py -> /build/isospec-1.9.1/.pybuild/cpython3_3.7_isospec/build/IsoSpecPy copying IsoSpecPy/__init__.py -> /build/isospec-1.9.1/.pybuild/cpython3_3.7_isospec/build/IsoSpecPy running build_ext building 'IsoSpecCppPy' extension creating build/temp.linux-amd64-3.7 creating build/temp.linux-amd64-3.7/IsoSpec++ x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/isospec-1.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.7m -c IsoSpec++/unity-build.cpp -o build/temp.linux-amd64-3.7/IsoSpec++/unity-build.o -O3 -std=c++11 x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/isospec-1.9.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-3.7/IsoSpec++/unity-build.o -o /build/isospec-1.9.1/.pybuild/cpython3_3.7_isospec/build/IsoSpecCppPy.cpython-37m-x86_64-linux-gnu.so running install_lib creating /build/isospec-1.9.1/debian/python3-isospec creating /build/isospec-1.9.1/debian/python3-isospec/usr creating /build/isospec-1.9.1/debian/python3-isospec/usr/lib creating /build/isospec-1.9.1/debian/python3-isospec/usr/lib/python3.7 creating /build/isospec-1.9.1/debian/python3-isospec/usr/lib/python3.7/dist-packages copying /build/isospec-1.9.1/.pybuild/cpython3_3.7_isospec/build/IsoSpecCppPy.cpython-37m-x86_64-linux-gnu.so -> /build/isospec-1.9.1/debian/python3-isospec/usr/lib/python3.7/dist-packages creating /build/isospec-1.9.1/debian/python3-isospec/usr/lib/python3.7/dist-packages/IsoSpecPy copying /build/isospec-1.9.1/.pybuild/cpython3_3.7_isospec/build/IsoSpecPy/__init__.py -> /build/isospec-1.9.1/debian/python3-isospec/usr/lib/python3.7/dist-packages/IsoSpecPy copying /build/isospec-1.9.1/.pybuild/cpython3_3.7_isospec/build/IsoSpecPy/PeriodicTbl.py -> /build/isospec-1.9.1/debian/python3-isospec/usr/lib/python3.7/dist-packages/IsoSpecPy copying /build/isospec-1.9.1/.pybuild/cpython3_3.7_isospec/build/IsoSpecPy/IsoSpecPy.py -> /build/isospec-1.9.1/debian/python3-isospec/usr/lib/python3.7/dist-packages/IsoSpecPy copying /build/isospec-1.9.1/.pybuild/cpython3_3.7_isospec/build/IsoSpecPy/kahan.py -> /build/isospec-1.9.1/debian/python3-isospec/usr/lib/python3.7/dist-packages/IsoSpecPy copying /build/isospec-1.9.1/.pybuild/cpython3_3.7_isospec/build/IsoSpecPy/confs_passthrough.py -> /build/isospec-1.9.1/debian/python3-isospec/usr/lib/python3.7/dist-packages/IsoSpecPy copying /build/isospec-1.9.1/.pybuild/cpython3_3.7_isospec/build/IsoSpecPy/isoFFI.py -> /build/isospec-1.9.1/debian/python3-isospec/usr/lib/python3.7/dist-packages/IsoSpecPy byte-compiling /build/isospec-1.9.1/debian/python3-isospec/usr/lib/python3.7/dist-packages/IsoSpecPy/__init__.py to __init__.cpython-37.pyc byte-compiling /build/isospec-1.9.1/debian/python3-isospec/usr/lib/python3.7/dist-packages/IsoSpecPy/PeriodicTbl.py to PeriodicTbl.cpython-37.pyc byte-compiling /build/isospec-1.9.1/debian/python3-isospec/usr/lib/python3.7/dist-packages/IsoSpecPy/IsoSpecPy.py to IsoSpecPy.cpython-37.pyc byte-compiling /build/isospec-1.9.1/debian/python3-isospec/usr/lib/python3.7/dist-packages/IsoSpecPy/kahan.py to kahan.cpython-37.pyc byte-compiling /build/isospec-1.9.1/debian/python3-isospec/usr/lib/python3.7/dist-packages/IsoSpecPy/confs_passthrough.py to confs_passthrough.cpython-37.pyc byte-compiling /build/isospec-1.9.1/debian/python3-isospec/usr/lib/python3.7/dist-packages/IsoSpecPy/isoFFI.py to isoFFI.cpython-37.pyc running install_egg_info running egg_info writing IsoSpecPy.egg-info/PKG-INFO writing dependency_links to IsoSpecPy.egg-info/dependency_links.txt writing requirements to IsoSpecPy.egg-info/requires.txt writing top-level names to IsoSpecPy.egg-info/top_level.txt reading manifest file 'IsoSpecPy.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'IsoSpecPy/*.dll' writing manifest file 'IsoSpecPy.egg-info/SOURCES.txt' Copying IsoSpecPy.egg-info to /build/isospec-1.9.1/debian/python3-isospec/usr/lib/python3.7/dist-packages/IsoSpecPy-1.9.1.egg-info Skipping SOURCES.txt running install_scripts make[1]: Leaving directory '/build/isospec-1.9.1' dh_install -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy cp --reflink=auto -a ./IsoSpec\+\+/allocator.h ./IsoSpec\+\+/conf.h ./IsoSpec\+\+/cwrapper.h ./IsoSpec\+\+/dirtyAllocator.h ./IsoSpec\+\+/element_tables.h ./IsoSpec\+\+/isoMath.h ./IsoSpec\+\+/isoSpec\+\+.h ./IsoSpec\+\+/marginalTrek\+\+.h ./IsoSpec\+\+/misc.h ./IsoSpec\+\+/mman.h ./IsoSpec\+\+/operators.h ./IsoSpec\+\+/platform.h ./IsoSpec\+\+/summator.h ./IsoSpec\+\+/tabulator.h debian/libisospec\+\+-dev/usr/include/IsoSpec\+\+/ install -d debian/.debhelper/generated/libisospec\+\+-dev cp --reflink=auto -a ./IsoSpec\+\+/libIsoSpec\+\+.so.1.9.1 debian/libisospec\+\+1//usr/lib/ install -d debian/.debhelper/generated/libisospec\+\+1 cp --reflink=auto -a ./Examples/C\+\+ ./Examples/Python ./Examples/R debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc/examples/ cp --reflink=auto -a ./man/html/allocator_8cpp_source.html ./man/html/allocator_8h_source.html ./man/html/annotated.html ./man/html/bc_s.png ./man/html/bdwn.png ./man/html/class_iso_spec_1_1_allocator-members.html ./man/html/class_iso_spec_1_1_allocator.html ./man/html/class_iso_spec_1_1_conf_equal-members.html ./man/html/class_iso_spec_1_1_conf_equal.html ./man/html/class_iso_spec_1_1_conf_order-members.html ./man/html/class_iso_spec_1_1_conf_order.html ./man/html/class_iso_spec_1_1_conf_order_marginal-members.html ./man/html/class_iso_spec_1_1_conf_order_marginal.html ./man/html/class_iso_spec_1_1_conf_order_marginal_descending-members.html ./man/html/class_iso_spec_1_1_conf_order_marginal_descending.html ./man/html/class_iso_spec_1_1_dirty_allocator-members.html ./man/html/class_iso_spec_1_1_dirty_allocator.html ./man/html/class_iso_spec_1_1_iso-members.html ./man/html/class_iso_spec_1_1_iso.html ./man/html/class_iso_spec_1_1_iso.png ./man/html/class_iso_spec_1_1_iso_generator-members.html ./man/html/class_iso_spec_1_1_iso_generator.html ./man/html/class_iso_spec_1_1_iso_generator.png ./man/html/class_iso_spec_1_1_iso_layered_generator-members.html ./man/html/class_iso_spec_1_1_iso_layered_generator.html ./man/html/class_iso_spec_1_1_iso_layered_generator.png ./man/html/class_iso_spec_1_1_iso_ordered_generator-members.html ./man/html/class_iso_spec_1_1_iso_ordered_generator.html ./man/html/class_iso_spec_1_1_iso_ordered_generator.png ./man/html/class_iso_spec_1_1_iso_threshold_generator-members.html ./man/html/class_iso_spec_1_1_iso_threshold_generator.html ./man/html/class_iso_spec_1_1_iso_threshold_generator.png ./man/html/class_iso_spec_1_1_key_hasher-members.html ./man/html/class_iso_spec_1_1_key_hasher.html ./man/html/class_iso_spec_1_1_marginal-members.html ./man/html/class_iso_spec_1_1_marginal.html ./man/html/class_iso_spec_1_1_marginal.png ./man/html/class_iso_spec_1_1_marginal_trek-members.html ./man/html/class_iso_spec_1_1_marginal_trek.html ./man/html/class_iso_spec_1_1_marginal_trek.png ./man/html/class_iso_spec_1_1_order_marginals_by_size_decresing-members.html ./man/html/class_iso_spec_1_1_order_marginals_by_size_decresing.html ./man/html/class_iso_spec_1_1_precalculated_marginal-members.html ./man/html/class_iso_spec_1_1_precalculated_marginal.html ./man/html/class_iso_spec_1_1_precalculated_marginal.png ./man/html/class_iso_spec_1_1_reverse_order-members.html ./man/html/class_iso_spec_1_1_reverse_order.html ./man/html/class_iso_spec_1_1_s_summator-members.html ./man/html/class_iso_spec_1_1_s_summator.html ./man/html/class_iso_spec_1_1_summator-members.html ./man/html/class_iso_spec_1_1_summator.html ./man/html/class_iso_spec_1_1_t_summator-members.html ./man/html/class_iso_spec_1_1_t_summator.html ./man/html/class_iso_spec_1_1_table_order-members.html ./man/html/class_iso_spec_1_1_table_order.html ./man/html/class_iso_spec_1_1_tabulator-members.html ./man/html/class_iso_spec_1_1_tabulator.html ./man/html/classes.html ./man/html/closed.png ./man/html/conf_8h_source.html ./man/html/cwrapper_8cpp_source.html ./man/html/cwrapper_8h_source.html ./man/html/dir_a3505bc52982c4b58e8e73ba88673843.html ./man/html/dirty_allocator_8cpp_source.html ./man/html/dirty_allocator_8h_source.html ./man/html/doc.png ./man/html/doxygen.css ./man/html/doxygen.png ./man/html/dynsections.js ./man/html/element__tables_8cpp_source.html ./man/html/element__tables_8h_source.html ./man/html/files.html ./man/html/folderclosed.png ./man/html/folderopen.png ./man/html/functions.html ./man/html/functions_func.html ./man/html/functions_vars.html ./man/html/hierarchy.html ./man/html/index.html ./man/html/iso_math_8cpp_source.html ./man/html/iso_math_8h_source.html ./man/html/iso_spec_09_09_8cpp_source.html ./man/html/iso_spec_09_09_8h_source.html ./man/html/jquery.js ./man/html/logo.png ./man/html/marginal_trek_09_09_8cpp_source.html ./man/html/marginal_trek_09_09_8h_source.html ./man/html/menu.js ./man/html/menudata.js ./man/html/misc_8cpp_source.html ./man/html/misc_8h_source.html ./man/html/mman_8c_source.html ./man/html/mman_8h_source.html ./man/html/namespace_iso_spec.html ./man/html/namespacemembers.html ./man/html/namespacemembers_func.html ./man/html/namespaces.html ./man/html/nav_f.png ./man/html/nav_g.png ./man/html/nav_h.png ./man/html/open.png ./man/html/operators_8cpp_source.html ./man/html/operators_8h_source.html ./man/html/platform_8h_source.html ./man/html/search ./man/html/splitbar.png ./man/html/summator_8h_source.html ./man/html/sync_off.png ./man/html/sync_on.png ./man/html/tab_a.png ./man/html/tab_b.png ./man/html/tab_h.png ./man/html/tab_s.png ./man/html/tabs.css ./man/html/tabulator_8cpp_source.html ./man/html/tabulator_8h_source.html ./man/html/unity-build_8cpp_source.html debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc/html/ install -d debian/.debhelper/generated/libisospec\+\+-doc install -d debian/r-cran-isospec// cp --reflink=auto -a ./tmp-install/usr debian/r-cran-isospec/// install -d debian/.debhelper/generated/r-cran-isospec install -d debian/.debhelper/generated/python3-isospec dh_installdocs -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy install -d debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev install -p -m0644 debian/copyright debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev/copyright install -d debian/libisospec\+\+1/usr/share/doc/libisospec\+\+1 install -p -m0644 debian/copyright debian/libisospec\+\+1/usr/share/doc/libisospec\+\+1/copyright install -p -m0644 debian/copyright debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc/copyright install -d debian/libisospec\+\+-doc/usr/share/doc-base/ install -p -m0644 debian/libisospec\+\+-doc.doc-base.documentation debian/libisospec\+\+-doc/usr/share/doc-base/libisospec\+\+ install -d debian/r-cran-isospec/usr/share/doc/r-cran-isospec cp --reflink=auto -a ./CHANGELOG debian/r-cran-isospec/usr/share/doc/r-cran-isospec cp --reflink=auto -a ./README debian/r-cran-isospec/usr/share/doc/r-cran-isospec chown -R 0:0 debian/r-cran-isospec/usr/share/doc chmod -R u\+rw,go=rX debian/r-cran-isospec/usr/share/doc install -p -m0644 debian/copyright debian/r-cran-isospec/usr/share/doc/r-cran-isospec/copyright install -d debian/python3-isospec/usr/share/doc/python3-isospec install -p -m0644 debian/copyright debian/python3-isospec/usr/share/doc/python3-isospec/copyright dh_installchangelogs -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy install -p -m0644 debian/changelog debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc/changelog.Debian install -p -m0644 ./CHANGELOG debian/libisospec\+\+-doc/usr/share/doc/libisospec\+\+-doc/changelog install -p -m0644 debian/changelog debian/python3-isospec/usr/share/doc/python3-isospec/changelog.Debian install -p -m0644 ./CHANGELOG debian/python3-isospec/usr/share/doc/python3-isospec/changelog install -p -m0644 debian/changelog debian/libisospec\+\+1/usr/share/doc/libisospec\+\+1/changelog.Debian install -p -m0644 ./CHANGELOG debian/libisospec\+\+1/usr/share/doc/libisospec\+\+1/changelog install -p -m0644 debian/changelog debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev/changelog.Debian install -p -m0644 ./CHANGELOG debian/libisospec\+\+-dev/usr/share/doc/libisospec\+\+-dev/changelog install -p -m0644 debian/changelog debian/r-cran-isospec/usr/share/doc/r-cran-isospec/changelog.Debian mv debian/r-cran-isospec/usr/share/doc/r-cran-isospec/CHANGELOG debian/r-cran-isospec/usr/share/doc/r-cran-isospec/changelog chmod 0644 -- debian/r-cran-isospec/usr/share/doc/r-cran-isospec/changelog chown 0:0 -- debian/r-cran-isospec/usr/share/doc/r-cran-isospec/changelog dh_python3 -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy D: dh_python3 dh_python3:161: version: 3.20190308 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild', '-O--sourcedirectory=IsoSpecPy'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--sourcedirectory=IsoSpecPy'} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:166: supported Python versions: 3.7 (default=3.7) D: dh_python3 debhelper:100: skipping package libisospec++-dev (missing ${python3:Depends} in Depends) D: dh_python3 debhelper:100: skipping package libisospec++1 (missing ${python3:Depends} in Depends) D: dh_python3 debhelper:100: skipping package libisospec++-doc (missing ${python3:Depends} in Depends) D: dh_python3 debhelper:100: skipping package r-cran-isospec (missing ${python3:Depends} in Depends) D: dh_python3 debhelper:153: source=isospec, binary packages=['python3-isospec'] D: dh_python3 dh_python3:183: processing package python3-isospec... D: dh_python3 fs:49: moving files from debian/python3-isospec/usr/lib/python3.7/dist-packages to debian/python3-isospec/usr/lib/python3/dist-packages/ D: dh_python3 tools:232: invoking: /usr/bin/python3.7 -c 'import sysconfig as s;print("__SEP__".join(i or "" for i in s.get_config_vars("SOABI", "MULTIARCH", "INCLUDEPY", "LIBPL", "LDLIBRARY")))' D: dh_python3 fs:260: package python3-isospec details = {'requires.txt': {'debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecPy-1.9.1.egg-info/requires.txt'}, 'egg-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.7')}, 'ext_no_version': set()} D: dh_python3 depends:114: generating dependencies for package python3-isospec D: dh_python3 pydist:138: trying to find dependency for cffi (python=None) D: dh_python3 depends:272: D={'python3 (>= 3.7~)', 'python3-cffi-backend-api-min (<= 9729), python3-cffi-backend-api-max (>= 9729)', 'python3 (<< 3.8)', 'python3:any'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installinit -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy dh_perl -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy dh_link -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy rm -f debian/libisospec\+\+-dev/usr/lib/libIsoSpec\+\+.so ln -s libIsoSpec\+\+.so.1.9.1 debian/libisospec\+\+-dev/usr/lib/libIsoSpec\+\+.so rm -f debian/libisospec\+\+1/usr/lib/libIsoSpec\+\+.so.1 ln -s libIsoSpec\+\+.so.1.9.1 debian/libisospec\+\+1/usr/lib/libIsoSpec\+\+.so.1 dh_strip_nondeterminism -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy Using 1551889424 as canonical time Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/tab_s.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/tab_h.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/tab_b.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/tab_a.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/splitbar.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/open.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/sync_on.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/sync_off.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/nav_h.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/nav_g.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/nav_f.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/logo.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/doxygen.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/doc.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/folderopen.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/folderclosed.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/class_iso_spec_1_1_marginal_trek.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/class_iso_spec_1_1_marginal.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/closed.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/class_iso_spec_1_1_precalculated_marginal.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/class_iso_spec_1_1_iso_threshold_generator.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/class_iso_spec_1_1_iso_ordered_generator.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/class_iso_spec_1_1_iso_layered_generator.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/class_iso_spec_1_1_iso_generator.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/bc_s.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/search/mag_sel.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/class_iso_spec_1_1_iso.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/bdwn.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/search/close.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/search/search_r.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/search/search_m.png using File::StripNondeterminism::handlers::png Normalizing debian/libisospec++-doc/usr/share/doc/libisospec++-doc/html/search/search_l.png using File::StripNondeterminism::handlers::png dh_compress -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy cd debian/libisospec++-dev cd debian/libisospec++1 cd debian/libisospec++-doc cd debian/r-cran-isospec cd debian/python3-isospec chmod a-x usr/share/doc/libisospec\+\+1/changelog usr/share/doc/libisospec\+\+1/changelog.Debian chmod a-x usr/share/doc/libisospec\+\+-dev/changelog usr/share/doc/libisospec\+\+-dev/changelog.Debian chmod a-x usr/share/doc/python3-isospec/changelog usr/share/doc/python3-isospec/changelog.Debian gzip -9nf usr/share/doc/libisospec\+\+1/changelog usr/share/doc/libisospec\+\+1/changelog.Debian gzip -9nf usr/share/doc/libisospec\+\+-dev/changelog usr/share/doc/libisospec\+\+-dev/changelog.Debian gzip -9nf usr/share/doc/python3-isospec/changelog usr/share/doc/python3-isospec/changelog.Debian chmod a-x usr/share/doc/r-cran-isospec/changelog usr/share/doc/r-cran-isospec/changelog.Debian cd '/build/isospec-1.9.1' cd '/build/isospec-1.9.1' gzip -9nf usr/share/doc/r-cran-isospec/changelog usr/share/doc/r-cran-isospec/changelog.Debian cd '/build/isospec-1.9.1' cd '/build/isospec-1.9.1' chmod a-x usr/share/doc/libisospec\+\+-doc/changelog usr/share/doc/libisospec\+\+-doc/changelog.Debian usr/share/doc/libisospec\+\+-doc/examples/C\+\+/water.cpp gzip -9nf usr/share/doc/libisospec\+\+-doc/changelog usr/share/doc/libisospec\+\+-doc/changelog.Debian usr/share/doc/libisospec\+\+-doc/examples/C\+\+/water.cpp cd '/build/isospec-1.9.1' dh_fixperms -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy find debian/libisospec++-dev -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libisospec++1 -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libisospec++-doc -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/r-cran-isospec -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python3-isospec -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/libisospec\+\+1 ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libisospec\+\+-dev ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-isospec ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/r-cran-isospec ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/libisospec\+\+1/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++1/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-dev/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++-dev/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+1/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-isospec/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-isospec/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+1 -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-dev/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/r-cran-isospec/usr/share/doc -type f -a -true -a ! -regex 'debian/r-cran-isospec/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+1/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/python3-isospec/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libisospec\+\+-dev/usr/include -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/r-cran-isospec/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-isospec -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-dev -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/r-cran-isospec -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-doc ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-isospec/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libisospec\+\+-dev/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/r-cran-isospec/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w find debian/libisospec\+\+-doc/usr/share/doc -type f -a -true -a ! -regex 'debian/libisospec++-doc/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/libisospec\+\+-doc/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/libisospec\+\+-doc -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 dh_missing -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy dh_strip -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy install -d debian/.debhelper/libisospec\+\+1/dbgsym-root/usr/lib/debug/.build-id/ba objcopy --only-keep-debug --compress-debug-sections debian/libisospec\+\+1/usr/lib/libIsoSpec\+\+.so.1.9.1 debian/.debhelper/libisospec\+\+1/dbgsym-root/usr/lib/debug/.build-id/ba/5337416b2013119eb70029b6f9dbd9cd532969.debug install -d debian/.debhelper/python3-isospec/dbgsym-root/usr/lib/debug/.build-id/b3 objcopy --only-keep-debug --compress-debug-sections debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-37m-x86_64-linux-gnu.so debian/.debhelper/python3-isospec/dbgsym-root/usr/lib/debug/.build-id/b3/1e31164372474aafcae18634d0602ceb1cbd40.debug install -d debian/.debhelper/r-cran-isospec/dbgsym-root/usr/lib/debug/.build-id/9b objcopy --only-keep-debug --compress-debug-sections debian/r-cran-isospec/usr/lib/R/site-library/IsoSpecR/libs/IsoSpecR.so debian/.debhelper/r-cran-isospec/dbgsym-root/usr/lib/debug/.build-id/9b/3815adf79673320cb9a316937ed10765f6e787.debug chmod 0644 -- debian/.debhelper/python3-isospec/dbgsym-root/usr/lib/debug/.build-id/b3/1e31164372474aafcae18634d0602ceb1cbd40.debug chown 0:0 -- debian/.debhelper/python3-isospec/dbgsym-root/usr/lib/debug/.build-id/b3/1e31164372474aafcae18634d0602ceb1cbd40.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-37m-x86_64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-isospec/dbgsym-root/usr/lib/debug/.build-id/b3/1e31164372474aafcae18634d0602ceb1cbd40.debug debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-37m-x86_64-linux-gnu.so install -d debian/.debhelper/python3-isospec/dbgsym-root/usr/share/doc ln -s python3-isospec debian/.debhelper/python3-isospec/dbgsym-root/usr/share/doc/python3-isospec-dbgsym chmod 0644 -- debian/.debhelper/libisospec\+\+1/dbgsym-root/usr/lib/debug/.build-id/ba/5337416b2013119eb70029b6f9dbd9cd532969.debug chown 0:0 -- debian/.debhelper/libisospec\+\+1/dbgsym-root/usr/lib/debug/.build-id/ba/5337416b2013119eb70029b6f9dbd9cd532969.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/libisospec\+\+1/usr/lib/libIsoSpec\+\+.so.1.9.1 objcopy --add-gnu-debuglink debian/.debhelper/libisospec\+\+1/dbgsym-root/usr/lib/debug/.build-id/ba/5337416b2013119eb70029b6f9dbd9cd532969.debug debian/libisospec\+\+1/usr/lib/libIsoSpec\+\+.so.1.9.1 install -d debian/.debhelper/libisospec\+\+1/dbgsym-root/usr/share/doc ln -s libisospec\+\+1 debian/.debhelper/libisospec\+\+1/dbgsym-root/usr/share/doc/libisospec\+\+1-dbgsym chmod 0644 -- debian/.debhelper/r-cran-isospec/dbgsym-root/usr/lib/debug/.build-id/9b/3815adf79673320cb9a316937ed10765f6e787.debug chown 0:0 -- debian/.debhelper/r-cran-isospec/dbgsym-root/usr/lib/debug/.build-id/9b/3815adf79673320cb9a316937ed10765f6e787.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/r-cran-isospec/usr/lib/R/site-library/IsoSpecR/libs/IsoSpecR.so objcopy --add-gnu-debuglink debian/.debhelper/r-cran-isospec/dbgsym-root/usr/lib/debug/.build-id/9b/3815adf79673320cb9a316937ed10765f6e787.debug debian/r-cran-isospec/usr/lib/R/site-library/IsoSpecR/libs/IsoSpecR.so install -d debian/.debhelper/r-cran-isospec/dbgsym-root/usr/share/doc ln -s r-cran-isospec debian/.debhelper/r-cran-isospec/dbgsym-root/usr/share/doc/r-cran-isospec-dbgsym dh_makeshlibs -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy rm -f debian/libisospec\+\+-dev/DEBIAN/shlibs rm -f debian/libisospec\+\+1/DEBIAN/shlibs install -d debian/libisospec\+\+1/DEBIAN echo "libIsoSpec++ 1 libisospec++1" >> debian/libisospec\+\+1/DEBIAN/shlibs chmod 0644 -- debian/libisospec\+\+1/DEBIAN/shlibs chown 0:0 -- debian/libisospec\+\+1/DEBIAN/shlibs mv debian/.debhelper/generated/libisospec\+\+1/triggers.new debian/.debhelper/generated/libisospec\+\+1/triggers rm -f debian/libisospec\+\+-doc/DEBIAN/shlibs rm -f debian/r-cran-isospec/DEBIAN/shlibs rm -f debian/python3-isospec/DEBIAN/shlibs dh_shlibdeps -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy dpkg-shlibdeps -Tdebian/libisospec\+\+1.substvars debian/libisospec\+\+1/usr/lib/libIsoSpec\+\+.so.1.9.1 install -d debian/python3-isospec/DEBIAN dpkg-shlibdeps -Tdebian/python3-isospec.substvars debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-37m-x86_64-linux-gnu.so install -d debian/r-cran-isospec/DEBIAN dpkg-shlibdeps -Tdebian/r-cran-isospec.substvars debian/r-cran-isospec/usr/lib/R/site-library/IsoSpecR/libs/IsoSpecR.so dpkg-shlibdeps: warning: can't extract name and version from library name 'libR.so' dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/python3-isospec/usr/lib/python3/dist-packages/IsoSpecCppPy.cpython-37m-x86_64-linux-gnu.so was not linked against libpthread.so.0 (it uses none of the library's symbols) dh_installdeb -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy install -d debian/libisospec\+\+-dev/DEBIAN install -p -m0644 debian/.debhelper/generated/libisospec\+\+1/triggers debian/libisospec\+\+1/DEBIAN/triggers install -d debian/libisospec\+\+-doc/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-isospec/DEBIAN/postinst cat debian/python3-isospec.postinst.debhelper >> debian/python3-isospec/DEBIAN/postinst chmod 0755 -- debian/python3-isospec/DEBIAN/postinst chown 0:0 -- debian/python3-isospec/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-isospec/DEBIAN/prerm cat debian/python3-isospec.prerm.debhelper >> debian/python3-isospec/DEBIAN/prerm chmod 0755 -- debian/python3-isospec/DEBIAN/prerm chown 0:0 -- debian/python3-isospec/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy echo misc:Depends= >> debian/libisospec++-dev.substvars echo misc:Pre-Depends= >> debian/libisospec++-dev.substvars dpkg-gencontrol -plibisospec\+\+-dev -ldebian/changelog -Tdebian/libisospec\+\+-dev.substvars -Pdebian/libisospec\+\+-dev -UMulti-Arch echo misc:Depends= >> debian/libisospec++-doc.substvars echo misc:Pre-Depends= >> debian/libisospec++-doc.substvars dpkg-gencontrol -plibisospec\+\+-doc -ldebian/changelog -Tdebian/libisospec\+\+-doc.substvars -Pdebian/libisospec\+\+-doc -UMulti-Arch echo misc:Depends= >> debian/libisospec++1.substvars echo misc:Pre-Depends= >> debian/libisospec++1.substvars install -d debian/.debhelper/libisospec\+\+1/dbgsym-root/DEBIAN dpkg-gencontrol -plibisospec\+\+1 -ldebian/changelog -Tdebian/libisospec\+\+1.substvars -Pdebian/.debhelper/libisospec\+\+1/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=libisospec\+\+1-dbgsym "-DDepends=libisospec++1 (= \${binary:Version})" "-DDescription=debug symbols for libisospec++1" -DBuild-Ids=ba5337416b2013119eb70029b6f9dbd9cd532969 -DSection=debug -UMulti-Arch -UReplaces -UBreaks echo misc:Depends= >> debian/python3-isospec.substvars echo misc:Pre-Depends= >> debian/python3-isospec.substvars install -d debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-isospec -ldebian/changelog -Tdebian/python3-isospec.substvars -Pdebian/.debhelper/python3-isospec/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=python3-isospec-dbgsym "-DDepends=python3-isospec (= \${binary:Version})" "-DDescription=debug symbols for python3-isospec" -DBuild-Ids=b31e31164372474aafcae18634d0602ceb1cbd40 -DSection=debug -UMulti-Arch -UReplaces -UBreaks echo misc:Depends= >> debian/r-cran-isospec.substvars echo misc:Pre-Depends= >> debian/r-cran-isospec.substvars install -d debian/.debhelper/r-cran-isospec/dbgsym-root/DEBIAN dpkg-gencontrol -pr-cran-isospec -ldebian/changelog -Tdebian/r-cran-isospec.substvars -Pdebian/.debhelper/r-cran-isospec/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -DPackage=r-cran-isospec-dbgsym "-DDepends=r-cran-isospec (= \${binary:Version})" "-DDescription=debug symbols for r-cran-isospec" -DBuild-Ids=9b3815adf79673320cb9a316937ed10765f6e787 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/libisospec\+\+1/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/libisospec\+\+1/dbgsym-root/DEBIAN/control dpkg-gencontrol -plibisospec\+\+1 -ldebian/changelog -Tdebian/libisospec\+\+1.substvars -Pdebian/libisospec\+\+1 -UMulti-Arch dpkg-gencontrol: warning: package python3-isospec: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-isospec: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package libisospec++-dev: substitution variable ${R:Depends} unused, but is defined chmod 0644 -- debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-isospec -ldebian/changelog -Tdebian/python3-isospec.substvars -Pdebian/python3-isospec -UMulti-Arch dpkg-gencontrol: warning: Depends field of package r-cran-isospec: substitution variable ${R:Depends} used, but is not defined chmod 0644 -- debian/libisospec\+\+-dev/DEBIAN/control chown 0:0 -- debian/libisospec\+\+-dev/DEBIAN/control dpkg-gencontrol: warning: Recommends field of package r-cran-isospec: substitution variable ${R:Recommends} used, but is not defined dpkg-gencontrol: warning: Suggests field of package r-cran-isospec: substitution variable ${R:Suggests} used, but is not defined chmod 0644 -- debian/.debhelper/r-cran-isospec/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/r-cran-isospec/dbgsym-root/DEBIAN/control dpkg-gencontrol -pr-cran-isospec -ldebian/changelog -Tdebian/r-cran-isospec.substvars -Pdebian/r-cran-isospec -UMulti-Arch chmod 0644 -- debian/libisospec\+\+-doc/DEBIAN/control chown 0:0 -- debian/libisospec\+\+-doc/DEBIAN/control dpkg-gencontrol: warning: package python3-isospec: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-isospec: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/python3-isospec/DEBIAN/control chown 0:0 -- debian/python3-isospec/DEBIAN/control chmod 0644 -- debian/libisospec\+\+1/DEBIAN/control chown 0:0 -- debian/libisospec\+\+1/DEBIAN/control dpkg-gencontrol: warning: Depends field of package r-cran-isospec: substitution variable ${R:Depends} used, but is not defined dpkg-gencontrol: warning: Recommends field of package r-cran-isospec: substitution variable ${R:Recommends} used, but is not defined dpkg-gencontrol: warning: Suggests field of package r-cran-isospec: substitution variable ${R:Suggests} used, but is not defined chmod 0644 -- debian/r-cran-isospec/DEBIAN/control chown 0:0 -- debian/r-cran-isospec/DEBIAN/control dh_md5sums -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy cd debian/libisospec++-dev >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/libisospec++1 >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libisospec\+\+-dev/DEBIAN/md5sums chown 0:0 -- debian/libisospec\+\+-dev/DEBIAN/md5sums cd debian/libisospec++-doc >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/libisospec\+\+1/DEBIAN/md5sums chown 0:0 -- debian/libisospec\+\+1/DEBIAN/md5sums cd debian/python3-isospec >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/r-cran-isospec >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/.debhelper/libisospec++1/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/r-cran-isospec/DEBIAN/md5sums chown 0:0 -- debian/r-cran-isospec/DEBIAN/md5sums chmod 0644 -- debian/python3-isospec/DEBIAN/md5sums chown 0:0 -- debian/python3-isospec/DEBIAN/md5sums chmod 0644 -- debian/libisospec\+\+-doc/DEBIAN/md5sums chown 0:0 -- debian/libisospec\+\+-doc/DEBIAN/md5sums cd debian/.debhelper/r-cran-isospec/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/libisospec\+\+1/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/libisospec\+\+1/dbgsym-root/DEBIAN/md5sums cd debian/.debhelper/python3-isospec/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/r-cran-isospec/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/r-cran-isospec/dbgsym-root/DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/python3-isospec/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild -O--sourcedirectory=IsoSpecPy dpkg-deb --build debian/libisospec\+\+-dev .. dpkg-deb --build debian/libisospec\+\+1 .. dpkg-deb --build debian/.debhelper/libisospec\+\+1/dbgsym-root .. dpkg-deb --build debian/libisospec\+\+-doc .. dpkg-deb --build debian/r-cran-isospec .. dpkg-deb --build debian/.debhelper/r-cran-isospec/dbgsym-root .. dpkg-deb --build debian/python3-isospec .. dpkg-deb --build debian/.debhelper/python3-isospec/dbgsym-root .. dpkg-deb: building package 'libisospec++-dev' in '../libisospec++-dev_1.9.1-5_amd64.deb'. dpkg-deb: building package 'libisospec++1' in '../libisospec++1_1.9.1-5_amd64.deb'. dpkg-deb: building package 'libisospec++1-dbgsym' in '../libisospec++1-dbgsym_1.9.1-5_amd64.deb'. dpkg-deb: building package 'libisospec++-doc' in '../libisospec++-doc_1.9.1-5_all.deb'. dpkg-deb: building package 'r-cran-isospec' in '../r-cran-isospec_1.9.1-5_amd64.deb'. dpkg-deb: building package 'r-cran-isospec-dbgsym' in '../r-cran-isospec-dbgsym_1.9.1-5_amd64.deb'. dpkg-deb: building package 'python3-isospec-dbgsym' in '../python3-isospec-dbgsym_1.9.1-5_amd64.deb'. dpkg-deb: building package 'python3-isospec' in '../python3-isospec_1.9.1-5_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../isospec_1.9.1-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3011896 and its subdirectories I: Current time: Fri Jan 6 12:17:57 -12 2023 I: pbuilder-time-stamp: 1673050677 Sat Dec 4 17:54:57 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Sat Dec 4 17:54:57 UTC 2021 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Sat Dec 4 17:57:13 UTC 2021 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Sat Dec 4 17:57:13 UTC 2021 I: isospec_1.9.1-5_amd64.changes: Format: 1.8 Date: Wed, 06 Mar 2019 17:23:44 +0100 Source: isospec Binary: libisospec++-dev libisospec++-doc libisospec++1 libisospec++1-dbgsym python3-isospec python3-isospec-dbgsym r-cran-isospec r-cran-isospec-dbgsym Architecture: amd64 all Version: 1.9.1-5 Distribution: unstable Urgency: low Maintainer: The Debichem Group Changed-By: Filippo Rusconi Description: libisospec++-dev - Isotopic fine structure calculator (C++ development files) libisospec++-doc - Isotopic fine structure calculator (C++ API documentation) libisospec++1 - Isotopic fine structure calculator (C++ runtime) python3-isospec - Isotopic fine structure calculator for Python 3 r-cran-isospec - Isotopic fine structure calculator for GNU R Changes: isospec (1.9.1-5) unstable; urgency=low . * patch: Fix the IsoSpec++ build command line flags for riscv64 as it did not recognize the -march flag. I removed it, like I did before for m68k, for example. . * patch: Remove the -march=native compile flag for IsoSpec++ as it is considered erroneous to use if cross-builds are performed (Debian QA error: E march-native). Checksums-Sha1: b455c14542b0038622d9be355232718e9eb2a370 11380 isospec_1.9.1-5_amd64.buildinfo 082fb4f89e2e2b35baad9d6470cc70d4604e874b 16992 libisospec++-dev_1.9.1-5_amd64.deb 80fb94a82538cd2fbb53b0f52182b389ae5967fe 356596 libisospec++-doc_1.9.1-5_all.deb 5867cfe88506b73515a53de3af7a27cfe87b6603 283396 libisospec++1-dbgsym_1.9.1-5_amd64.deb 304dd07bfe05df52fce9b7f21cedf3217951df49 51160 libisospec++1_1.9.1-5_amd64.deb a1fed87bb41502e84e9fb91eea1af483df8e3829 277084 python3-isospec-dbgsym_1.9.1-5_amd64.deb 677fa7fe0e716e76f8433f71e815891681bef387 55300 python3-isospec_1.9.1-5_amd64.deb 4b216c728f932b1d0ed1a13fdf6e0c5edfcbd7f1 902836 r-cran-isospec-dbgsym_1.9.1-5_amd64.deb cae85bed1192d699c3160c3468b40546f6e1c1da 113260 r-cran-isospec_1.9.1-5_amd64.deb Checksums-Sha256: 42171ed0a75c9f3d1de9c4b8bdf4200178c503bae6d522c517df0086727441ce 11380 isospec_1.9.1-5_amd64.buildinfo 1958063eb83905f0b00684fb05d5c9ccac3fd619060003610cbf8a8f2962475f 16992 libisospec++-dev_1.9.1-5_amd64.deb 967f9924264c191185717f22e41590b3e19da728666ff31ff955126996d92f84 356596 libisospec++-doc_1.9.1-5_all.deb bde120cb778e3784252b46c489a423a5a0a4ddb4fbc78ea1d3eaf0f9b7e146ec 283396 libisospec++1-dbgsym_1.9.1-5_amd64.deb a06ee6511f31711194d619505df6514724a215ee40f308adb93dc46837159e62 51160 libisospec++1_1.9.1-5_amd64.deb cdc75b5076d6571382340aa8f7c617898074fc8f864968fddd02994f170b96be 277084 python3-isospec-dbgsym_1.9.1-5_amd64.deb 5bacba8d581895735191e9934b0af36d334ee45945d747bde448e0cdaaaa5833 55300 python3-isospec_1.9.1-5_amd64.deb a18c08361e761308e585eb12b09f63ae30a5dc86985d54749ac135f5d9c9cefe 902836 r-cran-isospec-dbgsym_1.9.1-5_amd64.deb 1a055ec89fae6047067b06b2ba27398a4c51c2ed92056fa2ab9f664f4e8de14c 113260 r-cran-isospec_1.9.1-5_amd64.deb Files: aa5006f45e6bd3f50e209cdb838fb315 11380 science optional isospec_1.9.1-5_amd64.buildinfo 5bc28f0c6c4b351000a8392d6ca2e5d4 16992 libdevel optional libisospec++-dev_1.9.1-5_amd64.deb 7deb1e877da20a35672508844b2d7804 356596 doc optional libisospec++-doc_1.9.1-5_all.deb b73af083467a15f9a6fbaa0004b5ca9e 283396 debug optional libisospec++1-dbgsym_1.9.1-5_amd64.deb e15bedb74cf9050751e5eb23555fcf6b 51160 libs optional libisospec++1_1.9.1-5_amd64.deb b0940821ce8ea2b9c1371c7cef96a4a0 277084 debug optional python3-isospec-dbgsym_1.9.1-5_amd64.deb 7981ac1962cccc85ce390deac9e0024a 55300 python optional python3-isospec_1.9.1-5_amd64.deb cfe8b8b3fbc1a09d6db8c02cea1bebe4 902836 debug optional r-cran-isospec-dbgsym_1.9.1-5_amd64.deb 8d8553a169a3079bba993aded11a3cb4 113260 gnu-r optional r-cran-isospec_1.9.1-5_amd64.deb Sat Dec 4 17:57:17 UTC 2021 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.a6n5rNGPOA/isospec_1.9.1-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.a6n5rNGPOA/isospec_1.9.1-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.a6n5rNGPOA/isospec_1.9.1-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.a6n5rNGPOA/b1/isospec_1.9.1-5_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.a6n5rNGPOA/b2/isospec_1.9.1-5_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 2.265s) 2.265s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.231s) 0.230s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Sat Dec 4 17:58:58 UTC 2021 I: found no differences in the changes files, and a .buildinfo file also exists. Sat Dec 4 17:58:58 UTC 2021 I: isospec from buster built successfully and reproducibly on amd64. Sat Dec 4 17:59:05 UTC 2021 I: Submitting .buildinfo files to external archives: Sat Dec 4 17:59:05 UTC 2021 I: Submitting 12K b1/isospec_1.9.1-5_amd64.buildinfo.asc Sat Dec 4 17:59:10 UTC 2021 I: Submitting 12K b2/isospec_1.9.1-5_amd64.buildinfo.asc Sat Dec 4 17:59:19 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Dec 4 17:59:19 UTC 2021 I: Done submitting .buildinfo files. Sat Dec 4 17:59:19 UTC 2021 I: Removing signed isospec_1.9.1-5_amd64.buildinfo.asc files: removed './b1/isospec_1.9.1-5_amd64.buildinfo.asc' removed './b2/isospec_1.9.1-5_amd64.buildinfo.asc'