Fri Dec 3 01:54:36 UTC 2021 I: starting to build hilive/buster/amd64 on jenkins on '2021-12-03 01:54' Fri Dec 3 01:54:36 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_4/38177/console.log Fri Dec 3 01:54:36 UTC 2021 I: Downloading source for buster/hilive=1.1-2 --2021-12-03 01:54:37-- http://deb.debian.org/debian/pool/main/h/hilive/hilive_1.1-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2039 (2.0K) Saving to: ‘hilive_1.1-2.dsc’ 0K . 100% 85.9M=0s 2021-12-03 01:54:37 (85.9 MB/s) - ‘hilive_1.1-2.dsc’ saved [2039/2039] Fri Dec 3 01:54:37 UTC 2021 I: hilive_1.1-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: hilive Binary: hilive Architecture: any Version: 1.1-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://gitlab.com/SimonHTausch/HiLive Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/hilive Vcs-Git: https://salsa.debian.org/med-team/hilive.git Build-Depends: debhelper (>= 11~), cmake, libboost-system-dev, libboost-filesystem-dev, libboost-program-options-dev, libhts-dev, libseqan2-dev, zlib1g-dev, liblz4-dev, chrpath Package-List: hilive deb science optional arch=any Checksums-Sha1: bf668dfbab9a16b78af7d2be717ccdb1328d16f6 63899 hilive_1.1.orig.tar.gz 77356528d4b8ded3eeb04dc2e113ae3a02259fea 5272 hilive_1.1-2.debian.tar.xz Checksums-Sha256: f1e1cc81fd6d77baa4486f3e841b7d7701db92c41091029c0d797898d53e847f 63899 hilive_1.1.orig.tar.gz db84ee3e5fb1001c4ef9a601ada61d784fa7693ef99131889d103b8d07468db6 5272 hilive_1.1-2.debian.tar.xz Files: 9f1b7b93bf3550a7dcf188ae89f28fd9 63899 hilive_1.1.orig.tar.gz ed00df6552d67cbece4564428c85deee 5272 hilive_1.1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlwzRwERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtG2nA/9FsvwDsVXixz1G9AUwnegX4j+lgjF5pv0 WRuA34R9akgxWwXT0tb+vRWATdMlkm8sWcl7i+vPhbLHxd7KdkxAquHvWAuG6B0f hoV/xFiHFVN0W7JZJ1atkhqhoLg9pZ+W+XuAgVQqm9PDQewpB3GnMlAKjL5/88BS yadf1LLLICNFiEWMF3TqTFmox2We3Pm7GWPzHbkWMJ9RrpMWrTkomWKa4F0P6QZH H8w3HbsRnAGaDzapOgKa4fBT8Nyt3fIaJxkL8GoPfBrcAZOM1MbZ1SuXodd9Gi0e 3o8XL0b80kccFR/luBQiOscoU3zgJy/yo6abF0FL/RCpvTMY5cPYIAoRsEM8jKO+ cSr2uBaVGnLoNfVbMNRR8cRLlq5QQs/sFpyIUSTEqOpbTobFEwHql0AU1kHHV3XG vmLlIWe5iyXajp/AAvraBX1Hu1BmOkcD8WSbDwAG3tLtkufEooZbLOfKdDeSEcQO lw7cBFlbpYn4dBN6roLe+KhLoB1mP7e40wGjC6/eUIDXpWvYy6yUVU2w2xhQy8vD fe3ndMUGRlBbMOI71j7uyryf/RU/hfHFzWjW7IIIay47DPAOV393HmpPZtZeOEZv gqyoMsP5vZRVghn2GN4cKpBog5C8DQXyrMxX3kGTyDDhMieJz9Ol8rM/l8abheeK g1Z06qsoIeY= =h9+k -----END PGP SIGNATURE----- Fri Dec 3 01:54:37 UTC 2021 I: Checking whether the package is not for us Fri Dec 3 01:54:37 UTC 2021 I: Starting 1st build on remote node ionos15-amd64.debian.net. Fri Dec 3 01:54:37 UTC 2021 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Fri Dec 3 01:57:19 UTC 2021 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jan 4 20:17:41 -12 2023 I: pbuilder-time-stamp: 1672906661 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [hilive_1.1-2.dsc] I: copying [./hilive_1.1.orig.tar.gz] I: copying [./hilive_1.1-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Jan 7 00:33:05 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./hilive_1.1-2.dsc dpkg-source: info: extracting hilive in hilive-1.1 dpkg-source: info: unpacking hilive_1.1.orig.tar.gz dpkg-source: info: unpacking hilive_1.1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying do_not_set_rpath.patch dpkg-source: info: applying use_FindSeQan.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/795693/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='32e491e6e8364e8eb7e48c54e9cad29c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='795693' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.hCYN5FoFu5/pbuilderrc_4PQI --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.hCYN5FoFu5/b1 --logfile b1/build.log hilive_1.1-2.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 5.14.0-0.bpo.2-amd64 #1 SMP Debian 5.14.9-2~bpo11+1 (2021-10-10) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Dec 10 16:20 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/795693/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), cmake, libboost-system-dev, libboost-filesystem-dev, libboost-program-options-dev, libhts-dev, libseqan2-dev, zlib1g-dev, liblz4-dev, chrpath dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev; however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on liblz4-dev; however: Package liblz4-dev is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} chrpath{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libboost-filesystem-dev{a} libboost-filesystem1.67-dev{a} libboost-filesystem1.67.0{a} libboost-program-options-dev{a} libboost-program-options1.67-dev{a} libboost-program-options1.67.0{a} libboost-system-dev{a} libboost-system1.67-dev{a} libboost1.67-dev{a} libbsd0{a} libcroco3{a} libcurl3-gnutls{a} libcurl4{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libgssapi-krb5-2{a} libhts-dev{a} libhts2{a} libicu63{a} libjsoncpp1{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.4-2{a} libldap-common{a} liblz4-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps7{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libsigsegv2{a} libssh2-1{a} libssl1.1{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} lsb-base{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix shared-mime-info wget xdg-user-dirs 0 packages upgraded, 76 newly installed, 0 to remove and 0 not upgraded. Need to get 45.2 MB of archives. After unpacking 272 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 libprocps7 amd64 2:3.3.15-2 [61.7 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 procps amd64 2:3.3.15-2 [259 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 chrpath amd64 0.16-2+b1 [17.1 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 cmake-data all 3.13.4-1 [1476 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libarchive13 amd64 3.3.3-4+deb10u1 [313 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u3 [65.8 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u3 [122 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u7 [1539 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u3 [370 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u3 [158 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u1 [69.1 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u1 [106 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u6 [90.0 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u6 [224 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 libcurl4 amd64 7.64.0-4+deb10u2 [332 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 libjsoncpp1 amd64 1.7.4-3 [75.6 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 librhash0 amd64 1.3.8-1 [122 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 libuv1 amd64 1.24.1-1+deb10u1 [110 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 cmake amd64 3.13.4-1 [3480 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 libboost1.67-dev amd64 1.67.0-13+deb10u1 [8388 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 libboost-filesystem1.67.0 amd64 1.67.0-13+deb10u1 [261 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 libboost-system1.67-dev amd64 1.67.0-13+deb10u1 [231 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 libboost-filesystem1.67-dev amd64 1.67.0-13+deb10u1 [269 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 libboost-filesystem-dev amd64 1.67.0.1 [3684 B] Get: 65 http://deb.debian.org/debian buster/main amd64 libboost-program-options1.67.0 amd64 1.67.0-13+deb10u1 [357 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 libboost-program-options1.67-dev amd64 1.67.0-13+deb10u1 [385 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 libboost-program-options-dev amd64 1.67.0.1 [3656 B] Get: 68 http://deb.debian.org/debian buster/main amd64 libboost-system-dev amd64 1.67.0.1 [3788 B] Get: 69 http://deb.debian.org/debian buster/main amd64 libcurl3-gnutls amd64 7.64.0-4+deb10u2 [330 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 libdeflate0 amd64 1.2-1 [55.4 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 libhts2 amd64 1.9-12~deb10u1 [305 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 liblzma-dev amd64 5.2.4-1 [210 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1 [214 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 libhts-dev amd64 1.9-12~deb10u1 [4347 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 liblz4-dev amd64 1.8.3-1+deb10u1 [69.4 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 libseqan2-dev all 2.4.0+dfsg-11 [1220 kB] Fetched 45.2 MB in 1s (32.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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Preparing to unpack .../14-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../15-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../16-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../17-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../18-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../19-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../20-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package chrpath. Preparing to unpack .../21-chrpath_0.16-2+b1_amd64.deb ... Unpacking chrpath (0.16-2+b1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../22-cmake-data_3.13.4-1_all.deb ... Unpacking cmake-data (3.13.4-1) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../23-libicu63_63.1-6+deb10u1_amd64.deb ... Unpacking libicu63:amd64 (63.1-6+deb10u1) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../24-libxml2_2.9.4+dfsg1-7+deb10u2_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../25-libarchive13_3.3.3-4+deb10u1_amd64.deb ... Unpacking libarchive13:amd64 (3.3.3-4+deb10u1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../26-libkeyutils1_1.6-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6-6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../27-libkrb5support0_1.17-3+deb10u3_amd64.deb ... Unpacking libkrb5support0:amd64 (1.17-3+deb10u3) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../28-libk5crypto3_1.17-3+deb10u3_amd64.deb ... Unpacking libk5crypto3:amd64 (1.17-3+deb10u3) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../29-libssl1.1_1.1.1d-0+deb10u7_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1d-0+deb10u7) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../30-libkrb5-3_1.17-3+deb10u3_amd64.deb ... Unpacking libkrb5-3:amd64 (1.17-3+deb10u3) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../31-libgssapi-krb5-2_1.17-3+deb10u3_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.17-3+deb10u3) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../32-libsasl2-modules-db_2.1.27+dfsg-1+deb10u1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../33-libsasl2-2_2.1.27+dfsg-1+deb10u1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u1) ... Selecting previously unselected package libldap-common. Preparing to unpack .../34-libldap-common_2.4.47+dfsg-3+deb10u6_all.deb ... Unpacking libldap-common (2.4.47+dfsg-3+deb10u6) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../35-libldap-2.4-2_2.4.47+dfsg-3+deb10u6_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u6) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../36-libnghttp2-14_1.36.0-2+deb10u1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../37-libpsl5_0.20.2-2_amd64.deb ... Unpacking libpsl5:amd64 (0.20.2-2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../38-librtmp1_2.4+20151223.gitfa8646d.1-2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../39-libssh2-1_1.8.0-2.1_amd64.deb ... Unpacking libssh2-1:amd64 (1.8.0-2.1) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../40-libcurl4_7.64.0-4+deb10u2_amd64.deb ... Unpacking libcurl4:amd64 (7.64.0-4+deb10u2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../41-libexpat1_2.2.6-2+deb10u1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.6-2+deb10u1) ... Selecting previously unselected package libjsoncpp1:amd64. Preparing to unpack .../42-libjsoncpp1_1.7.4-3_amd64.deb ... Unpacking libjsoncpp1:amd64 (1.7.4-3) ... Selecting previously unselected package librhash0:amd64. Preparing to unpack .../43-librhash0_1.3.8-1_amd64.deb ... Unpacking librhash0:amd64 (1.3.8-1) ... Selecting previously unselected package libuv1:amd64. Preparing to unpack .../44-libuv1_1.24.1-1+deb10u1_amd64.deb ... Unpacking libuv1:amd64 (1.24.1-1+deb10u1) ... Selecting previously unselected package cmake. Preparing to unpack .../45-cmake_3.13.4-1_amd64.deb ... Unpacking cmake (3.13.4-1) ... Selecting previously unselected package libtool. Preparing to unpack .../46-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../47-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../48-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../49-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../50-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../51-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../52-dwz_0.12-3_amd64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../53-libglib2.0-0_2.58.3-2+deb10u3_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../54-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package gettext. Preparing to unpack .../55-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../56-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../57-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../58-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package libboost1.67-dev:amd64. Preparing to unpack .../59-libboost1.67-dev_1.67.0-13+deb10u1_amd64.deb ... Unpacking libboost1.67-dev:amd64 (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-filesystem1.67.0:amd64. Preparing to unpack .../60-libboost-filesystem1.67.0_1.67.0-13+deb10u1_amd64.deb ... Unpacking libboost-filesystem1.67.0:amd64 (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-system1.67-dev:amd64. Preparing to unpack .../61-libboost-system1.67-dev_1.67.0-13+deb10u1_amd64.deb ... Unpacking libboost-system1.67-dev:amd64 (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-filesystem1.67-dev:amd64. Preparing to unpack .../62-libboost-filesystem1.67-dev_1.67.0-13+deb10u1_amd64.deb ... Unpacking libboost-filesystem1.67-dev:amd64 (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-filesystem-dev:amd64. Preparing to unpack .../63-libboost-filesystem-dev_1.67.0.1_amd64.deb ... Unpacking libboost-filesystem-dev:amd64 (1.67.0.1) ... Selecting previously unselected package libboost-program-options1.67.0:amd64. Preparing to unpack .../64-libboost-program-options1.67.0_1.67.0-13+deb10u1_amd64.deb ... Unpacking libboost-program-options1.67.0:amd64 (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-program-options1.67-dev:amd64. Preparing to unpack .../65-libboost-program-options1.67-dev_1.67.0-13+deb10u1_amd64.deb ... Unpacking libboost-program-options1.67-dev:amd64 (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-program-options-dev:amd64. Preparing to unpack .../66-libboost-program-options-dev_1.67.0.1_amd64.deb ... Unpacking libboost-program-options-dev:amd64 (1.67.0.1) ... Selecting previously unselected package libboost-system-dev:amd64. Preparing to unpack .../67-libboost-system-dev_1.67.0.1_amd64.deb ... Unpacking libboost-system-dev:amd64 (1.67.0.1) ... Selecting previously unselected package libcurl3-gnutls:amd64. Preparing to unpack .../68-libcurl3-gnutls_7.64.0-4+deb10u2_amd64.deb ... Unpacking libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../69-libdeflate0_1.2-1_amd64.deb ... Unpacking libdeflate0:amd64 (1.2-1) ... Selecting previously unselected package libhts2:amd64. Preparing to unpack .../70-libhts2_1.9-12~deb10u1_amd64.deb ... Unpacking libhts2:amd64 (1.9-12~deb10u1) ... Selecting previously unselected package liblzma-dev:amd64. Preparing to unpack .../71-liblzma-dev_5.2.4-1_amd64.deb ... Unpacking liblzma-dev:amd64 (5.2.4-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../72-zlib1g-dev_1%3a1.2.11.dfsg-1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-1) ... Selecting previously unselected package libhts-dev:amd64. Preparing to unpack .../73-libhts-dev_1.9-12~deb10u1_amd64.deb ... Unpacking libhts-dev:amd64 (1.9-12~deb10u1) ... Selecting previously unselected package liblz4-dev:amd64. Preparing to unpack .../74-liblz4-dev_1.8.3-1+deb10u1_amd64.deb ... Unpacking liblz4-dev:amd64 (1.8.3-1+deb10u1) ... Selecting previously unselected package libseqan2-dev. Preparing to unpack .../75-libseqan2-dev_2.4.0+dfsg-11_all.deb ... Unpacking libseqan2-dev (2.4.0+dfsg-11) ... Setting up libboost1.67-dev:amd64 (1.67.0-13+deb10u1) ... Setting up libexpat1:amd64 (2.2.6-2+deb10u1) ... Setting up libboost-program-options1.67.0:amd64 (1.67.0-13+deb10u1) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up lsb-base (10.2019051400) ... Setting up libkeyutils1:amd64 (1.6-6) ... Setting up libpsl5:amd64 (0.20.2-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libboost-program-options1.67-dev:amd64 (1.67.0-13+deb10u1) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1d-0+deb10u7) ... Setting up libprocps7:amd64 (2:3.3.15-2) ... Setting up libnghttp2-14:amd64 (1.36.0-2+deb10u1) ... Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up libdeflate0:amd64 (1.2-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libldap-common (2.4.47+dfsg-3+deb10u6) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up libkrb5support0:amd64 (1.17-3+deb10u3) ... Setting up libseqan2-dev (2.4.0+dfsg-11) ... Setting up libsasl2-modules-db:amd64 (2.1.27+dfsg-1+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libuv1:amd64 (1.24.1-1+deb10u1) ... Setting up libboost-program-options-dev:amd64 (1.67.0.1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up liblz4-dev:amd64 (1.8.3-1+deb10u1) ... Setting up libk5crypto3:amd64 (1.17-3+deb10u3) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-1+deb10u1) ... Setting up liblzma-dev:amd64 (5.2.4-1) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1) ... Setting up sensible-utils (0.0.12) ... Setting up librhash0:amd64 (1.3.8-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up procps (2:3.3.15-2) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up libboost-filesystem1.67.0:amd64 (1.67.0-13+deb10u1) ... Setting up libssh2-1:amd64 (1.8.0-2.1) ... Setting up cmake-data (3.13.4-1) ... Setting up libboost-system1.67-dev:amd64 (1.67.0-13+deb10u1) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u3) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Setting up chrpath (0.16-2+b1) ... Setting up libjsoncpp1:amd64 (1.7.4-3) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libboost-filesystem1.67-dev:amd64 (1.67.0-13+deb10u1) ... Setting up libtool (2.4.6-9) ... Setting up libarchive13:amd64 (3.3.3-4+deb10u1) ... Setting up libboost-system-dev:amd64 (1.67.0.1) ... Setting up libldap-2.4-2:amd64 (2.4.47+dfsg-3+deb10u6) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u3) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up libcurl4:amd64 (7.64.0-4+deb10u2) ... Setting up libboost-filesystem-dev:amd64 (1.67.0.1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libcurl3-gnutls:amd64 (7.64.0-4+deb10u2) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up cmake (3.13.4-1) ... Setting up libhts2:amd64 (1.9-12~deb10u1) ... Setting up po-debconf (1.0.21) ... Setting up libhts-dev:amd64 (1.9-12~deb10u1) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/hilive-1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../hilive_1.1-2_source.changes dpkg-buildpackage: info: source package hilive dpkg-buildpackage: info: source version 1.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-x86_64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu .. -- The C compiler identification is GNU 8.3.0 -- The CXX compiler identification is GNU 8.3.0 -- Check for working C compiler: /usr/bin/cc -- Check for working C compiler: /usr/bin/cc -- works -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Detecting C compile features -- Detecting C compile features - done -- Check for working CXX compiler: /usr/bin/c++ -- Check for working CXX compiler: /usr/bin/c++ -- works -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Detecting CXX compile features -- Detecting CXX compile features - done -- Boost version: 1.67.0 -- Found the following Boost libraries: -- system -- filesystem -- program_options -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.2.11") -- Performing Test CXX14_BUILTIN -- Performing Test CXX14_BUILTIN - Success -- Looking for C++ include execinfo.h -- Looking for C++ include execinfo.h - found -- Found Seqan: /usr/include (found version "2.4.0") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/hilive-1.1/obj-x86_64-linux-gnu dh_auto_build cd obj-x86_64-linux-gnu && make -j16 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/hilive-1.1/obj-x86_64-linux-gnu' /usr/bin/cmake -S/build/hilive-1.1 -B/build/hilive-1.1/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/hilive-1.1/obj-x86_64-linux-gnu/CMakeFiles /build/hilive-1.1/obj-x86_64-linux-gnu/CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/hilive-1.1/obj-x86_64-linux-gnu' make -f CMakeFiles/HiLiveLibs.dir/build.make CMakeFiles/HiLiveLibs.dir/depend make[3]: Entering directory '/build/hilive-1.1/obj-x86_64-linux-gnu' cd /build/hilive-1.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hilive-1.1 /build/hilive-1.1 /build/hilive-1.1/obj-x86_64-linux-gnu /build/hilive-1.1/obj-x86_64-linux-gnu /build/hilive-1.1/obj-x86_64-linux-gnu/CMakeFiles/HiLiveLibs.dir/DependInfo.cmake --color= Scanning dependencies of target HiLiveLibs make[3]: Leaving directory '/build/hilive-1.1/obj-x86_64-linux-gnu' make -f CMakeFiles/HiLiveLibs.dir/build.make CMakeFiles/HiLiveLibs.dir/build make[3]: Entering directory '/build/hilive-1.1/obj-x86_64-linux-gnu' [ 6%] Building CXX object CMakeFiles/HiLiveLibs.dir/lib/tools_static.cpp.o /usr/bin/c++ -DHiLive_VERSION_MAJOR=1 -DHiLive_VERSION_MINOR=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/hilive-1.1/obj-x86_64-linux-gnu -I/build/hilive-1.1/lib -g -O2 -ffile-prefix-map=/build/hilive-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/HiLiveLibs.dir/lib/tools_static.cpp.o -c /build/hilive-1.1/lib/tools_static.cpp [ 13%] Building CXX object CMakeFiles/HiLiveLibs.dir/lib/tools.cpp.o /usr/bin/c++ -DHiLive_VERSION_MAJOR=1 -DHiLive_VERSION_MINOR=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/hilive-1.1/obj-x86_64-linux-gnu -I/build/hilive-1.1/lib -g -O2 -ffile-prefix-map=/build/hilive-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/HiLiveLibs.dir/lib/tools.cpp.o -c /build/hilive-1.1/lib/tools.cpp [ 20%] Building CXX object CMakeFiles/HiLiveLibs.dir/lib/alnread.cpp.o /usr/bin/c++ -DHiLive_VERSION_MAJOR=1 -DHiLive_VERSION_MINOR=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/hilive-1.1/obj-x86_64-linux-gnu -I/build/hilive-1.1/lib -g -O2 -ffile-prefix-map=/build/hilive-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/HiLiveLibs.dir/lib/alnread.cpp.o -c /build/hilive-1.1/lib/alnread.cpp [ 26%] Building CXX object CMakeFiles/HiLiveLibs.dir/lib/alnstream.cpp.o /usr/bin/c++ -DHiLive_VERSION_MAJOR=1 -DHiLive_VERSION_MINOR=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/hilive-1.1/obj-x86_64-linux-gnu -I/build/hilive-1.1/lib -g -O2 -ffile-prefix-map=/build/hilive-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/HiLiveLibs.dir/lib/alnstream.cpp.o -c /build/hilive-1.1/lib/alnstream.cpp [ 33%] Building CXX object CMakeFiles/HiLiveLibs.dir/lib/illumina_parsers.cpp.o /usr/bin/c++ -DHiLive_VERSION_MAJOR=1 -DHiLive_VERSION_MINOR=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/hilive-1.1/obj-x86_64-linux-gnu -I/build/hilive-1.1/lib -g -O2 -ffile-prefix-map=/build/hilive-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/HiLiveLibs.dir/lib/illumina_parsers.cpp.o -c /build/hilive-1.1/lib/illumina_parsers.cpp [ 40%] Building CXX object CMakeFiles/HiLiveLibs.dir/lib/kindex.cpp.o /usr/bin/c++ -DHiLive_VERSION_MAJOR=1 -DHiLive_VERSION_MINOR=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/hilive-1.1/obj-x86_64-linux-gnu -I/build/hilive-1.1/lib -g -O2 -ffile-prefix-map=/build/hilive-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/HiLiveLibs.dir/lib/kindex.cpp.o -c /build/hilive-1.1/lib/kindex.cpp [ 46%] Building CXX object CMakeFiles/HiLiveLibs.dir/lib/parallel.cpp.o /usr/bin/c++ -DHiLive_VERSION_MAJOR=1 -DHiLive_VERSION_MINOR=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/hilive-1.1/obj-x86_64-linux-gnu -I/build/hilive-1.1/lib -g -O2 -ffile-prefix-map=/build/hilive-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/HiLiveLibs.dir/lib/parallel.cpp.o -c /build/hilive-1.1/lib/parallel.cpp [ 53%] Building CXX object CMakeFiles/HiLiveLibs.dir/lib/argument_parser.cpp.o /usr/bin/c++ -DHiLive_VERSION_MAJOR=1 -DHiLive_VERSION_MINOR=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/hilive-1.1/obj-x86_64-linux-gnu -I/build/hilive-1.1/lib -g -O2 -ffile-prefix-map=/build/hilive-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/HiLiveLibs.dir/lib/argument_parser.cpp.o -c /build/hilive-1.1/lib/argument_parser.cpp /build/hilive-1.1/lib/alnstream.cpp: In member function 'uint64_t oAlnStream::lz4write(const char*, uint64_t)': /build/hilive-1.1/lib/alnstream.cpp:22:68: warning: 'int LZ4_compress(const char*, char*, int)' is deprecated: use LZ4_compress_default() instead [-Wdeprecated-declarations] uint32_t compressed_size = LZ4_compress (source, buf.data(), size); ^ In file included from /build/hilive-1.1/lib/headers.h:5, from /build/hilive-1.1/lib/alnstream.h:4, from /build/hilive-1.1/lib/alnstream.cpp:1: /usr/include/lz4.h:597:69: note: declared here LZ4_DEPRECATED("use LZ4_compress_default() instead") LZ4LIB_API int LZ4_compress (const char* source, char* dest, int sourceSize); ^~~~~~~~~~~~ /build/hilive-1.1/lib/alnstream.cpp:22:68: warning: 'int LZ4_compress(const char*, char*, int)' is deprecated: use LZ4_compress_default() instead [-Wdeprecated-declarations] uint32_t compressed_size = LZ4_compress (source, buf.data(), size); ^ In file included from /build/hilive-1.1/lib/headers.h:5, from /build/hilive-1.1/lib/alnstream.h:4, from /build/hilive-1.1/lib/alnstream.cpp:1: /usr/include/lz4.h:597:69: note: declared here LZ4_DEPRECATED("use LZ4_compress_default() instead") LZ4LIB_API int LZ4_compress (const char* source, char* dest, int sourceSize); ^~~~~~~~~~~~ /build/hilive-1.1/lib/kindex.cpp: In member function 'uint64_t KixRun::get_header_information(std::__cxx11::string)': /build/hilive-1.1/lib/kindex.cpp:475:7: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&kmer_weight,1,1,fi); ~~~~~^~~~~~~~~~~~~~~~~~~~~ /build/hilive-1.1/lib/kindex.cpp:480:7: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&gap_num,1,sizeof(uint8_t),fi); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/hilive-1.1/lib/kindex.cpp:485:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&gap, 1, sizeof(uint8_t), fi); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/hilive-1.1/lib/kindex.cpp:488:7: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&seq_amount,4,1,fi); ~~~~~^~~~~~~~~~~~~~~~~~~~ /build/hilive-1.1/lib/kindex.cpp:492:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&seq_name_len,2,1,fi); ~~~~~^~~~~~~~~~~~~~~~~~~~~~ /build/hilive-1.1/lib/kindex.cpp:502:8: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(&seq_len,4,1,fi); ~~~~~^~~~~~~~~~~~~~~~~ /build/hilive-1.1/lib/alnstream.cpp: In member function 'ReadAlignment* iAlnStream::get_alignment()': /build/hilive-1.1/lib/alnstream.cpp:365:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(buffer.data(),1,buf_size,fstream); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/hilive-1.1/lib/alnstream.cpp:394:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)', declared with attribute warn_unused_result [-Wunused-result] fread(buffer.data(),1,buf_size,fstream); ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 60%] Linking CXX static library libHiLiveLibs.a /usr/bin/cmake -P CMakeFiles/HiLiveLibs.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/HiLiveLibs.dir/link.txt --verbose=1 /usr/bin/ar qc libHiLiveLibs.a CMakeFiles/HiLiveLibs.dir/lib/tools_static.cpp.o CMakeFiles/HiLiveLibs.dir/lib/tools.cpp.o CMakeFiles/HiLiveLibs.dir/lib/alnread.cpp.o CMakeFiles/HiLiveLibs.dir/lib/alnstream.cpp.o CMakeFiles/HiLiveLibs.dir/lib/illumina_parsers.cpp.o CMakeFiles/HiLiveLibs.dir/lib/kindex.cpp.o CMakeFiles/HiLiveLibs.dir/lib/parallel.cpp.o CMakeFiles/HiLiveLibs.dir/lib/argument_parser.cpp.o /usr/bin/ranlib libHiLiveLibs.a make[3]: Leaving directory '/build/hilive-1.1/obj-x86_64-linux-gnu' [ 60%] Built target HiLiveLibs make -f CMakeFiles/hilive-out.dir/build.make CMakeFiles/hilive-out.dir/depend make[3]: Entering directory '/build/hilive-1.1/obj-x86_64-linux-gnu' cd /build/hilive-1.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hilive-1.1 /build/hilive-1.1 /build/hilive-1.1/obj-x86_64-linux-gnu /build/hilive-1.1/obj-x86_64-linux-gnu /build/hilive-1.1/obj-x86_64-linux-gnu/CMakeFiles/hilive-out.dir/DependInfo.cmake --color= make -f CMakeFiles/hilive-build.dir/build.make CMakeFiles/hilive-build.dir/depend make[3]: Entering directory '/build/hilive-1.1/obj-x86_64-linux-gnu' cd /build/hilive-1.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hilive-1.1 /build/hilive-1.1 /build/hilive-1.1/obj-x86_64-linux-gnu /build/hilive-1.1/obj-x86_64-linux-gnu /build/hilive-1.1/obj-x86_64-linux-gnu/CMakeFiles/hilive-build.dir/DependInfo.cmake --color= make -f CMakeFiles/hilive.dir/build.make CMakeFiles/hilive.dir/depend make[3]: Entering directory '/build/hilive-1.1/obj-x86_64-linux-gnu' cd /build/hilive-1.1/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hilive-1.1 /build/hilive-1.1 /build/hilive-1.1/obj-x86_64-linux-gnu /build/hilive-1.1/obj-x86_64-linux-gnu /build/hilive-1.1/obj-x86_64-linux-gnu/CMakeFiles/hilive.dir/DependInfo.cmake --color= Scanning dependencies of target hilive make[3]: Leaving directory '/build/hilive-1.1/obj-x86_64-linux-gnu' make -f CMakeFiles/hilive.dir/build.make CMakeFiles/hilive.dir/build make[3]: Entering directory '/build/hilive-1.1/obj-x86_64-linux-gnu' Scanning dependencies of target hilive-out make[3]: Leaving directory '/build/hilive-1.1/obj-x86_64-linux-gnu' make -f CMakeFiles/hilive-out.dir/build.make CMakeFiles/hilive-out.dir/build [ 66%] Building CXX object CMakeFiles/hilive.dir/tools/hilive.cpp.o Scanning dependencies of target hilive-build /usr/bin/c++ -DHiLive_VERSION_MAJOR=1 -DHiLive_VERSION_MINOR=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/hilive-1.1/obj-x86_64-linux-gnu -I/build/hilive-1.1/lib -g -O2 -ffile-prefix-map=/build/hilive-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/hilive.dir/tools/hilive.cpp.o -c /build/hilive-1.1/tools/hilive.cpp make[3]: Entering directory '/build/hilive-1.1/obj-x86_64-linux-gnu' make[3]: Leaving directory '/build/hilive-1.1/obj-x86_64-linux-gnu' make -f CMakeFiles/hilive-build.dir/build.make CMakeFiles/hilive-build.dir/build make[3]: Entering directory '/build/hilive-1.1/obj-x86_64-linux-gnu' [ 73%] Building CXX object CMakeFiles/hilive-out.dir/tools/hilive_out.cpp.o /usr/bin/c++ -DHiLive_VERSION_MAJOR=1 -DHiLive_VERSION_MINOR=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/hilive-1.1/obj-x86_64-linux-gnu -I/build/hilive-1.1/lib -g -O2 -ffile-prefix-map=/build/hilive-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/hilive-out.dir/tools/hilive_out.cpp.o -c /build/hilive-1.1/tools/hilive_out.cpp [ 80%] Building CXX object CMakeFiles/hilive-build.dir/tools/build_index.cpp.o /usr/bin/c++ -DHiLive_VERSION_MAJOR=1 -DHiLive_VERSION_MINOR=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/build/hilive-1.1/obj-x86_64-linux-gnu -I/build/hilive-1.1/lib -g -O2 -ffile-prefix-map=/build/hilive-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -o CMakeFiles/hilive-build.dir/tools/build_index.cpp.o -c /build/hilive-1.1/tools/build_index.cpp [ 86%] Linking CXX executable hilive-build /usr/bin/cmake -E cmake_link_script CMakeFiles/hilive-build.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hilive-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/hilive-build.dir/tools/build_index.cpp.o -o hilive-build libHiLiveLibs.a -lz -llz4 -Wl,-Bstatic -lboost_system -lboost_filesystem -lboost_program_options -Wl,-Bdynamic -lrt -lz -llz4 -Wl,-Bstatic -lboost_system -lboost_filesystem -lboost_program_options -Wl,-Bdynamic -lrt make[3]: Leaving directory '/build/hilive-1.1/obj-x86_64-linux-gnu' [ 86%] Built target hilive-build [ 93%] Linking CXX executable hilive-out /usr/bin/cmake -E cmake_link_script CMakeFiles/hilive-out.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hilive-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/hilive-out.dir/tools/hilive_out.cpp.o -o hilive-out libHiLiveLibs.a -lz -llz4 -Wl,-Bstatic -lboost_system -lboost_filesystem -lboost_program_options -Wl,-Bdynamic -lrt -lz -llz4 -Wl,-Bstatic -lboost_system -lboost_filesystem -lboost_program_options -Wl,-Bdynamic -lrt make[3]: Leaving directory '/build/hilive-1.1/obj-x86_64-linux-gnu' [ 93%] Built target hilive-out [100%] Linking CXX executable hilive /usr/bin/cmake -E cmake_link_script CMakeFiles/hilive.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/hilive-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -rdynamic CMakeFiles/hilive.dir/tools/hilive.cpp.o -o hilive libHiLiveLibs.a -lz -llz4 -Wl,-Bstatic -lboost_system -lboost_filesystem -lboost_program_options -Wl,-Bdynamic -lrt -lz -llz4 -Wl,-Bstatic -lboost_system -lboost_filesystem -lboost_program_options -Wl,-Bdynamic -lrt make[3]: Leaving directory '/build/hilive-1.1/obj-x86_64-linux-gnu' [100%] Built target hilive make[2]: Leaving directory '/build/hilive-1.1/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/hilive-1.1/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/hilive-1.1/obj-x86_64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install debian/rules override_dh_install make[1]: Entering directory '/build/hilive-1.1' chrpath --delete obj-x86_64-linux-gnu/hilive* dh_install make[1]: Leaving directory '/build/hilive-1.1' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/hilive/usr/bin/hilive debian/hilive/usr/bin/hilive-build were not linked against librt.so.1 (they use none of the library's symbols) dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'hilive-dbgsym' in '../hilive-dbgsym_1.1-2_amd64.deb'. dpkg-deb: building package 'hilive' in '../hilive_1.1-2_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../hilive_1.1-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/795693 and its subdirectories I: Current time: Wed Jan 4 20:20:20 -12 2023 I: pbuilder-time-stamp: 1672906820 Fri Dec 3 01:57:19 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Fri Dec 3 01:57:19 UTC 2021 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Fri Dec 3 02:03:46 UTC 2021 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Fri Dec 3 02:03:46 UTC 2021 I: hilive_1.1-2_amd64.changes: Format: 1.8 Date: Mon, 07 Jan 2019 13:28:52 +0100 Source: hilive Binary: hilive hilive-dbgsym Architecture: amd64 Version: 1.1-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: hilive - realtime alignment of Illumina reads Changes: hilive (1.1-2) unstable; urgency=medium . * Fix Homepage * Delete debian/get-orig-source since project moved from SF to Gitlab * Drop redundant debian/gbp.conf * Point Vcs fields to salsa.debian.org * Standards-Version: 4.3.0 * Remove trailing whitespace in debian/changelog Checksums-Sha1: 2f7fe88f0fb012a3aaa3c492f16b5a7e785786c0 7537932 hilive-dbgsym_1.1-2_amd64.deb e73fab2a65fc185659a8d572b241e64f25f2975d 6463 hilive_1.1-2_amd64.buildinfo 29723de7c67f47f0eaf742a39d5d6860b3dd9eba 503136 hilive_1.1-2_amd64.deb Checksums-Sha256: 0bd9afbec182c65c80ae2b332f5b37063d6e916df82ac81ca21937a4750c9172 7537932 hilive-dbgsym_1.1-2_amd64.deb f6478d5ef1dea5107cc555dd112eb70b72eb76f353d6e5b63a57906da84eaf43 6463 hilive_1.1-2_amd64.buildinfo 1af283682524c841929602a76dd3089dc2c4163c99b4e865c85c5cdc56364a59 503136 hilive_1.1-2_amd64.deb Files: 2189db2d4d5d4142172692a384e38194 7537932 debug optional hilive-dbgsym_1.1-2_amd64.deb 481162b22156715d8dd91beb1a81b410 6463 science optional hilive_1.1-2_amd64.buildinfo bdc9d08f632863a2ff3e1b3e8b0017fc 503136 science optional hilive_1.1-2_amd64.deb Fri Dec 3 02:03:53 UTC 2021 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.hCYN5FoFu5/hilive_1.1-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.hCYN5FoFu5/hilive_1.1-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.hCYN5FoFu5/hilive_1.1-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.hCYN5FoFu5/b1/hilive_1.1-2_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.hCYN5FoFu5/b2/hilive_1.1-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 5.894s) 5.894s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.542s) 0.542s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Fri Dec 3 02:08:04 UTC 2021 I: found no differences in the changes files, and a .buildinfo file also exists. Fri Dec 3 02:08:04 UTC 2021 I: hilive from buster built successfully and reproducibly on amd64. Fri Dec 3 02:08:17 UTC 2021 I: Submitting .buildinfo files to external archives: Fri Dec 3 02:08:17 UTC 2021 I: Submitting 8.0K b1/hilive_1.1-2_amd64.buildinfo.asc Fri Dec 3 02:08:23 UTC 2021 I: Submitting 8.0K b2/hilive_1.1-2_amd64.buildinfo.asc Fri Dec 3 02:08:29 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Dec 3 02:08:29 UTC 2021 I: Done submitting .buildinfo files. Fri Dec 3 02:08:29 UTC 2021 I: Removing signed hilive_1.1-2_amd64.buildinfo.asc files: removed './b1/hilive_1.1-2_amd64.buildinfo.asc' removed './b2/hilive_1.1-2_amd64.buildinfo.asc'