Wed Dec 1 23:47:06 UTC 2021 I: starting to build fast5/buster/amd64 on jenkins on '2021-12-01 23:46' Wed Dec 1 23:47:06 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_3/28422/console.log Wed Dec 1 23:47:06 UTC 2021 I: Downloading source for buster/fast5=0.6.5-2 --2021-12-01 23:47:06-- http://deb.debian.org/debian/pool/main/f/fast5/fast5_0.6.5-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2267 (2.2K) Saving to: ‘fast5_0.6.5-2.dsc’ 0K .. 100% 155M=0s 2021-12-01 23:47:06 (155 MB/s) - ‘fast5_0.6.5-2.dsc’ saved [2267/2267] Wed Dec 1 23:47:06 UTC 2021 I: fast5_0.6.5-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: fast5 Binary: fast5, libfast5-dev, python-fast5, python3-fast5 Architecture: any all Version: 0.6.5-2 Maintainer: Debian Med Packaging Team Uploaders: Afif Elghraoui Homepage: https://github.com/mateidavid/fast5 Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/fast5 Vcs-Git: https://salsa.debian.org/med-team/fast5.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper (>= 11), dh-python, libhdf5-dev, libboost-python-dev, python-all-dev, python-setuptools, python3-all-dev, python3-setuptools, cython, cython3 Package-List: fast5 deb science optional arch=all libfast5-dev deb libdevel optional arch=all python-fast5 deb python optional arch=any python3-fast5 deb python optional arch=any Checksums-Sha1: 21d1ddf5cb3cd0d426dab82480bfc0ef6a52d21e 93639 fast5_0.6.5.orig.tar.gz ac63ee5535d2607263a00a151686ba9c4b41a7aa 4332 fast5_0.6.5-2.debian.tar.xz Checksums-Sha256: f8b1ce2c07adb56b4f13337ef008e124255f86cdb7e74e4233afa8dca878ee1a 93639 fast5_0.6.5.orig.tar.gz 034783926e41adff903252d1a39f55cbcc9667734a537ff5da9ac5c7183abc78 4332 fast5_0.6.5-2.debian.tar.xz Files: 8fa84e045b0b775239413248f7bf5e83 93639 fast5_0.6.5.orig.tar.gz 0dead61e5d4f9e7a343bc987f80ebb71 4332 fast5_0.6.5-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlu8ov8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHo6A//cDSpsL2teodEhmFh1pt2IAiuYkRvB1lz xj4dV/BIiZKEDDDTzKNcUxViihlRZyxYlpqj0jJMlV1aF8C/Oey17M3RbkK/LpIw jw9K4R5BeJ4FpzE8C3QG4VfX5OmbFEWhSmRzO++/CxYcInODfUrL7Ox8FP2Hd7qR rJy/9KIcti7fJslxuy5n6r2cr0UBfIQYDJAU3PD1CdlombrtID9FPykx8EwXqYRW nqTDI1bFkjIFFbyWumrje7VGV7+N2sIVBRmIlIbqaRrpsvKxIQRLcv9MM3Fn17OU KXpUeRKTaRD8EtVmRrwG/+j2Kh8RnPVwk4jQnb7ZG0RO9/bvYW+lFN1qizhbH6XR 62LwyEIunrrSL7w3//CSLUbT6PWBPyQZ6Byg6UrZolOMbbJs2tH7eX4HTENl+Ext U0HaSFjH1ha7nQhMmZRB4e+A64JlMAtweAwZRo2qeZMm9oBPfA2N0VfYO4bYYxPz j7khO+KDbvCNQ7OI1Bybq8Mc8Y3/jkbvSGAhkYMv59020CCqz6GoyipDUOftKtho aJsCh4w3ayKtw1Ecrm7g5/FKuU0lqXF/eGCkwCeaLWwTQ/rkFb7OO0tbyd/6clH/ eyBZSoZPUsaMbTaingMHmScRHqzAH9Ng/Qh/bHXDE7c3itgclAIx1bzf2iEA4OWC GzlsZq0Ayfk= =wr+H -----END PGP SIGNATURE----- Wed Dec 1 23:47:06 UTC 2021 I: Checking whether the package is not for us Wed Dec 1 23:47:06 UTC 2021 I: Starting 1st build on remote node ionos1-amd64.debian.net. Wed Dec 1 23:47:06 UTC 2021 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Wed Dec 1 23:50:04 UTC 2021 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Dec 1 11:47:07 -12 2021 I: pbuilder-time-stamp: 1638402427 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fast5_0.6.5-2.dsc] I: copying [./fast5_0.6.5.orig.tar.gz] I: copying [./fast5_0.6.5-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Tue Oct 9 00:45:51 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./fast5_0.6.5-2.dsc dpkg-source: info: extracting fast5 in fast5-0.6.5 dpkg-source: info: unpacking fast5_0.6.5.orig.tar.gz dpkg-source: info: unpacking fast5_0.6.5-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying rpath.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1558674/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='7426cf92f4844dc89c318db3e3b6fa44' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1558674' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Qtw4pVeDbA/pbuilderrc_n0mk --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Qtw4pVeDbA/b1 --logfile b1/build.log fast5_0.6.5-2.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 5.10.0-9-amd64 #1 SMP Debian 5.10.70-1 (2021-09-30) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Nov 7 09:58 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/1558674/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11), dh-python, libhdf5-dev, libboost-python-dev, python-all-dev, python-setuptools, python3-all-dev, python3-setuptools, cython, cython3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on python-all-dev; however: Package python-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python-setuptools; however: Package python-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on cython; however: Package cython is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} cython{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libboost-python-dev{a} libboost-python1.67-dev{a} libboost-python1.67.0{a} libboost1.67-dev{a} libbsd0{a} libcroco3{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libhdf5-103{a} libhdf5-cpp-103{a} libhdf5-dev{a} libicu63{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libmagic-mgc{a} libmagic1{a} libmpdec2{a} libncurses6{a} libpipeline1{a} libpython-all-dev{a} libpython-dev{a} libpython-stdlib{a} libpython2-dev{a} libpython2-stdlib{a} libpython2.7{a} libpython2.7-dev{a} libpython2.7-minimal{a} libpython2.7-stdlib{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.7{a} libpython3.7-dev{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} libsigsegv2{a} libssl1.1{a} libsz2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} mime-support{a} po-debconf{a} python{a} python-all{a} python-all-dev{a} python-dev{a} python-minimal{a} python-pkg-resources{a} python-setuptools{a} python2{a} python2-dev{a} python2-minimal{a} python2.7{a} python2.7-dev{a} python2.7-minimal{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.7{a} python3.7-dev{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 100 newly installed, 0 to remove and 0 not upgraded. Need to get 132 MB of archives. After unpacking 441 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 libpython2.7-minimal amd64 2.7.16-2+deb10u1 [395 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 python2.7-minimal amd64 2.7.16-2+deb10u1 [1369 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 python2-minimal amd64 2.7.16-1 [41.4 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 python-minimal amd64 2.7.16-1 [21.0 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u7 [1539 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 libpython2.7-stdlib amd64 2.7.16-2+deb10u1 [1912 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 python2.7 amd64 2.7.16-2+deb10u1 [305 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libpython2-stdlib amd64 2.7.16-1 [20.8 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 libpython-stdlib amd64 2.7.16-1 [20.8 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 python2 amd64 2.7.16-1 [41.6 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 python amd64 2.7.16-1 [22.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 cython amd64 0.29.2-2 [1365 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 cython3 amd64 0.29.2-2 [1392 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 dh-python all 3.20190308 [99.3 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 hdf5-helpers amd64 1.10.4+repack-10 [35.2 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 libaec0 amd64 1.0.2-1 [20.1 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 libsz2 amd64 1.0.2-1 [6676 B] Get: 65 http://deb.debian.org/debian buster/main amd64 libaec-dev amd64 1.0.2-1 [18.4 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 libboost1.67-dev amd64 1.67.0-13+deb10u1 [8388 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 libboost-python1.67.0 amd64 1.67.0-13+deb10u1 [328 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 libpython2.7 amd64 2.7.16-2+deb10u1 [1036 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 libexpat1-dev amd64 2.2.6-2+deb10u1 [153 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 libpython2.7-dev amd64 2.7.16-2+deb10u1 [31.6 MB] Get: 71 http://deb.debian.org/debian buster/main amd64 libpython2-dev amd64 2.7.16-1 [20.9 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 libpython-dev amd64 2.7.16-1 [20.9 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 python2.7-dev amd64 2.7.16-2+deb10u1 [294 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 python2-dev amd64 2.7.16-1 [1212 B] Get: 75 http://deb.debian.org/debian buster/main amd64 python-dev amd64 2.7.16-1 [1192 B] Get: 76 http://deb.debian.org/debian buster/main amd64 libpython3.7 amd64 3.7.3-2+deb10u3 [1498 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 libpython3.7-dev amd64 3.7.3-2+deb10u3 [48.4 MB] Get: 78 http://deb.debian.org/debian buster/main amd64 libpython3-dev amd64 3.7.3-1 [20.1 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 python3.7-dev amd64 3.7.3-2+deb10u3 [510 kB] Get: 80 http://deb.debian.org/debian buster/main amd64 python3-dev amd64 3.7.3-1 [1264 B] Get: 81 http://deb.debian.org/debian buster/main amd64 libboost-python1.67-dev amd64 1.67.0-13+deb10u1 [335 kB] Get: 82 http://deb.debian.org/debian buster/main amd64 libboost-python-dev amd64 1.67.0.1 [3948 B] Get: 83 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get: 84 http://deb.debian.org/debian buster/main amd64 libhdf5-103 amd64 1.10.4+repack-10 [1325 kB] Get: 85 http://deb.debian.org/debian buster/main amd64 libhdf5-cpp-103 amd64 1.10.4+repack-10 [146 kB] Get: 86 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1 [214 kB] Get: 87 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get: 88 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo-dev amd64 1:1.5.2-2+deb10u1 [208 kB] Get: 89 http://deb.debian.org/debian buster/main amd64 libjpeg-dev all 1:1.5.2-2+deb10u1 [57.7 kB] Get: 90 http://deb.debian.org/debian buster/main amd64 libhdf5-dev amd64 1.10.4+repack-10 [2598 kB] Get: 91 http://deb.debian.org/debian buster/main amd64 libpython-all-dev amd64 2.7.16-1 [1064 B] Get: 92 http://deb.debian.org/debian buster/main amd64 libpython3-all-dev amd64 3.7.3-1 [1068 B] Get: 93 http://deb.debian.org/debian buster/main amd64 python-all amd64 2.7.16-1 [1044 B] Get: 94 http://deb.debian.org/debian buster/main amd64 python-all-dev amd64 2.7.16-1 [1068 B] Get: 95 http://deb.debian.org/debian buster/main amd64 python-pkg-resources all 40.8.0-1 [182 kB] Get: 96 http://deb.debian.org/debian buster/main amd64 python-setuptools all 40.8.0-1 [382 kB] Get: 97 http://deb.debian.org/debian buster/main amd64 python3-all amd64 3.7.3-1 [1068 B] Get: 98 http://deb.debian.org/debian buster/main amd64 python3-all-dev amd64 3.7.3-1 [1064 B] Get: 99 http://deb.debian.org/debian buster/main amd64 python3-pkg-resources all 40.8.0-1 [153 kB] Get: 100 http://deb.debian.org/debian buster/main amd64 python3-setuptools all 40.8.0-1 [306 kB] Fetched 132 MB in 2s (68.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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Setting up python2.7-minimal (2.7.16-2+deb10u1) ... Setting up python2-minimal (2.7.16-1) ... Selecting previously unselected package python2. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20658 files and directories currently installed.) Preparing to unpack .../python2_2.7.16-1_amd64.deb ... Unpacking python2 (2.7.16-1) ... Setting up python-minimal (2.7.16-1) ... Selecting previously unselected package python. (Reading database ... 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Unpacking libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Selecting previously unselected package python3.7. Preparing to unpack .../python3.7_3.7.3-2+deb10u3_amd64.deb ... Unpacking python3.7 (3.7.3-2+deb10u3) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../libpython3-stdlib_3.7.3-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.7.3-1) ... Setting up python3-minimal (3.7.3-1) ... Selecting previously unselected package python3. (Reading database ... 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Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../30-python3-lib2to3_3.7.3-1_all.deb ... Unpacking python3-lib2to3 (3.7.3-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../31-python3-distutils_3.7.3-1_all.deb ... Unpacking python3-distutils (3.7.3-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../32-dh-python_3.20190308_all.deb ... Unpacking dh-python (3.20190308) ... Selecting previously unselected package hdf5-helpers. 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Selecting previously unselected package libpython2.7:amd64. Preparing to unpack .../39-libpython2.7_2.7.16-2+deb10u1_amd64.deb ... Unpacking libpython2.7:amd64 (2.7.16-2+deb10u1) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../40-libexpat1-dev_2.2.6-2+deb10u1_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.2.6-2+deb10u1) ... Selecting previously unselected package libpython2.7-dev:amd64. Preparing to unpack .../41-libpython2.7-dev_2.7.16-2+deb10u1_amd64.deb ... Unpacking libpython2.7-dev:amd64 (2.7.16-2+deb10u1) ... Selecting previously unselected package libpython2-dev:amd64. Preparing to unpack .../42-libpython2-dev_2.7.16-1_amd64.deb ... Unpacking libpython2-dev:amd64 (2.7.16-1) ... Selecting previously unselected package libpython-dev:amd64. Preparing to unpack .../43-libpython-dev_2.7.16-1_amd64.deb ... Unpacking libpython-dev:amd64 (2.7.16-1) ... Selecting previously unselected package python2.7-dev. Preparing to unpack .../44-python2.7-dev_2.7.16-2+deb10u1_amd64.deb ... Unpacking python2.7-dev (2.7.16-2+deb10u1) ... Selecting previously unselected package python2-dev. Preparing to unpack .../45-python2-dev_2.7.16-1_amd64.deb ... Unpacking python2-dev (2.7.16-1) ... Selecting previously unselected package python-dev. Preparing to unpack .../46-python-dev_2.7.16-1_amd64.deb ... Unpacking python-dev (2.7.16-1) ... Selecting previously unselected package libpython3.7:amd64. Preparing to unpack .../47-libpython3.7_3.7.3-2+deb10u3_amd64.deb ... Unpacking libpython3.7:amd64 (3.7.3-2+deb10u3) ... Selecting previously unselected package libpython3.7-dev:amd64. Preparing to unpack .../48-libpython3.7-dev_3.7.3-2+deb10u3_amd64.deb ... Unpacking libpython3.7-dev:amd64 (3.7.3-2+deb10u3) ... Selecting previously unselected package libpython3-dev:amd64. Preparing to unpack .../49-libpython3-dev_3.7.3-1_amd64.deb ... Unpacking libpython3-dev:amd64 (3.7.3-1) ... Selecting previously unselected package python3.7-dev. Preparing to unpack .../50-python3.7-dev_3.7.3-2+deb10u3_amd64.deb ... Unpacking python3.7-dev (3.7.3-2+deb10u3) ... Selecting previously unselected package python3-dev. Preparing to unpack .../51-python3-dev_3.7.3-1_amd64.deb ... Unpacking python3-dev (3.7.3-1) ... Selecting previously unselected package libboost-python1.67-dev. Preparing to unpack .../52-libboost-python1.67-dev_1.67.0-13+deb10u1_amd64.deb ... Unpacking libboost-python1.67-dev (1.67.0-13+deb10u1) ... Selecting previously unselected package libboost-python-dev. Preparing to unpack .../53-libboost-python-dev_1.67.0.1_amd64.deb ... Unpacking libboost-python-dev (1.67.0.1) ... Selecting previously unselected package libgfortran5:amd64. Preparing to unpack .../54-libgfortran5_8.3.0-6_amd64.deb ... Unpacking libgfortran5:amd64 (8.3.0-6) ... Selecting previously unselected package libhdf5-103:amd64. Preparing to unpack .../55-libhdf5-103_1.10.4+repack-10_amd64.deb ... Unpacking libhdf5-103:amd64 (1.10.4+repack-10) ... Selecting previously unselected package libhdf5-cpp-103:amd64. Preparing to unpack .../56-libhdf5-cpp-103_1.10.4+repack-10_amd64.deb ... Unpacking libhdf5-cpp-103:amd64 (1.10.4+repack-10) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../57-zlib1g-dev_1%3a1.2.11.dfsg-1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.2.11.dfsg-1) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../58-libjpeg62-turbo_1%3a1.5.2-2+deb10u1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Selecting previously unselected package libjpeg62-turbo-dev:amd64. Preparing to unpack .../59-libjpeg62-turbo-dev_1%3a1.5.2-2+deb10u1_amd64.deb ... Unpacking libjpeg62-turbo-dev:amd64 (1:1.5.2-2+deb10u1) ... Selecting previously unselected package libjpeg-dev. Preparing to unpack .../60-libjpeg-dev_1%3a1.5.2-2+deb10u1_all.deb ... Unpacking libjpeg-dev (1:1.5.2-2+deb10u1) ... 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Setting up mime-support (3.62) ... Setting up hdf5-helpers (1.10.4+repack-10) ... Setting up libmagic-mgc (1:5.35-4+deb10u2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... No schema files found: doing nothing. Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libaec0:amd64 (1.0.2-1) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up autotools-dev (20180224.1) ... Setting up libexpat1-dev:amd64 (2.2.6-2+deb10u1) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Setting up libjpeg62-turbo-dev:amd64 (1:1.5.2-2+deb10u1) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-9) ... Setting up libgfortran5:amd64 (8.3.0-6) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libboost-python1.67.0 (1.67.0-13+deb10u1) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Setting up libsz2:amd64 (1.0.2-1) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Setting up libpython3.7:amd64 (3.7.3-2+deb10u3) ... Setting up libtool (2.4.6-9) ... Setting up libpython3.7-dev:amd64 (3.7.3-2+deb10u3) ... Setting up libaec-dev:amd64 (1.0.2-1) ... Setting up libjpeg-dev (1:1.5.2-2+deb10u1) ... Setting up m4 (1.4.18-2) ... Setting up libpython2.7-stdlib:amd64 (2.7.16-2+deb10u1) ... Setting up libhdf5-103:amd64 (1.10.4+repack-10) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up libpython2.7:amd64 (2.7.16-2+deb10u1) ... Setting up libpython2.7-dev:amd64 (2.7.16-2+deb10u1) ... Setting up gettext (0.19.8.1-9) ... Setting up libpython3-dev:amd64 (3.7.3-1) ... Setting up python2.7 (2.7.16-2+deb10u1) ... Setting up libpython2-stdlib:amd64 (2.7.16-1) ... Setting up libhdf5-cpp-103:amd64 (1.10.4+repack-10) ... Setting up python3 (3.7.3-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up python2 (2.7.16-1) ... Setting up python3.7-dev (3.7.3-2+deb10u3) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython-stdlib:amd64 (2.7.16-1) ... Setting up libpython3-all-dev:amd64 (3.7.3-1) ... Setting up libhdf5-dev (1.10.4+repack-10) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/x86_64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up cython3 (0.29.2-2) ... Setting up libpython2-dev:amd64 (2.7.16-1) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up python (2.7.16-1) ... Setting up python2.7-dev (2.7.16-2+deb10u1) ... Setting up python3-pkg-resources (40.8.0-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up dh-python (3.20190308) ... Setting up cython (0.29.2-2) ... Setting up python2-dev (2.7.16-1) ... Setting up python3-setuptools (40.8.0-1) ... Setting up python-pkg-resources (40.8.0-1) ... Setting up po-debconf (1.0.21) ... Setting up python3-all (3.7.3-1) ... Setting up python-all (2.7.16-1) ... Setting up libpython-dev:amd64 (2.7.16-1) ... Setting up python3-dev (3.7.3-1) ... Setting up python-setuptools (40.8.0-1) ... Setting up python-dev (2.7.16-1) ... Setting up python3-all-dev (3.7.3-1) ... Setting up libpython-all-dev:amd64 (2.7.16-1) ... Setting up python-all-dev (2.7.16-1) ... Setting up libboost-python1.67-dev (1.67.0-13+deb10u1) ... Setting up libboost-python-dev (1.67.0.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up debhelper (12.1.1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/fast5-0.6.5/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fast5_0.6.5-2_source.changes dpkg-buildpackage: info: source package fast5 dpkg-buildpackage: info: source version 0.6.5-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 dpkg-source: info: using options from fast5-0.6.5/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp fakeroot debian/rules clean dh clean --with python2,python3 --buildsystem=pybuild \ --sourcedirectory=python debian/rules override_dh_auto_clean make[1]: Entering directory '/build/fast5-0.6.5' cd src && /usr/bin/make clean make[2]: Entering directory '/build/fast5-0.6.5/src' rm -rf f5ls f5ls-full hdf5-mod f5-mod f5dump f5pack make[2]: Leaving directory '/build/fast5-0.6.5/src' dh_auto_clean I: pybuild base:217: python2.7 setup.py clean /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/fast5-0.6.5/python/fast5/fast5.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling fast5/fast5.pyx because it changed. [1/1] Cythonizing fast5/fast5.pyx running clean removing '/build/fast5-0.6.5/.pybuild/cpython2_2.7_fast5/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-2.7' does not exist -- can't clean it I: pybuild base:217: python3.7 setup.py clean running clean removing '/build/fast5-0.6.5/.pybuild/cpython3_3.7_fast5/build' (and everything under it) 'build/bdist.linux-amd64' does not exist -- can't clean it 'build/scripts-3.7' does not exist -- can't clean it rm -rf python/fast5/fast5.cpp make[1]: Leaving directory '/build/fast5-0.6.5' dh_autoreconf_clean -O--buildsystem=pybuild -O--sourcedirectory=python dh_clean -O--buildsystem=pybuild -O--sourcedirectory=python debian/rules build dh build --with python2,python3 --buildsystem=pybuild \ --sourcedirectory=python dh_update_autotools_config -O--buildsystem=pybuild -O--sourcedirectory=python dh_autoreconf -O--buildsystem=pybuild -O--sourcedirectory=python dh_auto_configure -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:217: python2.7 setup.py config /usr/lib/python2.7/dist-packages/Cython/Compiler/Main.py:367: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/fast5-0.6.5/python/fast5/fast5.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling fast5/fast5.pyx because it changed. [1/1] Cythonizing fast5/fast5.pyx running config I: pybuild base:217: python3.7 setup.py config running config dh_auto_build -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:217: /usr/bin/python setup.py build running build running build_ext building 'fast5' extension creating build creating build/temp.linux-amd64-2.7 creating build/temp.linux-amd64-2.7/fast5 x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -fno-strict-aliasing -g -O2 -ffile-prefix-map=/build/fast5-0.6.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I../src -I/usr/include/python2.7 -c fast5/fast5.cpp -o build/temp.linux-amd64-2.7/fast5/fast5.o -std=c++11 -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial cc1plus: warning: command line option ‘-Wstrict-prototypes’ is valid for C/ObjC but not for C++ x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -Wstrict-prototypes -Wdate-time -D_FORTIFY_SOURCE=2 -g -fdebug-prefix-map=/build/python2.7-2.7.16=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/fast5-0.6.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-2.7/fast5/fast5.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/fast5-0.6.5/.pybuild/cpython2_2.7_fast5/build/fast5.so running build_scripts creating build/scripts-2.7 copying and adjusting bin/f5ls -> build/scripts-2.7 copying and adjusting bin/f5pack -> build/scripts-2.7 changing mode of build/scripts-2.7/f5ls from 644 to 755 changing mode of build/scripts-2.7/f5pack from 644 to 755 I: pybuild base:217: /usr/bin/python3 setup.py build running build running build_ext building 'fast5' extension creating build/temp.linux-amd64-3.7 creating build/temp.linux-amd64-3.7/fast5 x86_64-linux-gnu-gcc -pthread -DNDEBUG -g -fwrapv -O2 -Wall -g -O2 -ffile-prefix-map=/build/fast5-0.6.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -I../src -I/usr/include/python3.7m -c fast5/fast5.cpp -o build/temp.linux-amd64-3.7/fast5/fast5.o -std=c++11 -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial x86_64-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -Wl,-z,relro -Wl,-z,now -g -O2 -ffile-prefix-map=/build/fast5-0.6.5=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-amd64-3.7/fast5/fast5.o -L/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -o /build/fast5-0.6.5/.pybuild/cpython3_3.7_fast5/build/fast5.cpython-37m-x86_64-linux-gnu.so running build_scripts creating build/scripts-3.7 copying and adjusting bin/f5ls -> build/scripts-3.7 copying and adjusting bin/f5pack -> build/scripts-3.7 changing mode of build/scripts-3.7/f5ls from 644 to 755 changing mode of build/scripts-3.7/f5pack from 644 to 755 debian/rules override_dh_auto_test make[1]: Entering directory '/build/fast5-0.6.5' cd src && /usr/bin/make make[2]: Entering directory '/build/fast5-0.6.5/src' g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /build/fast5-0.6.5/src/../include -o f5ls f5ls.cpp -L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /build/fast5-0.6.5/src/../include -o f5ls-full f5ls-full.cpp -L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /build/fast5-0.6.5/src/../include -o hdf5-mod hdf5-mod.cpp -L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl g++ -std=c++11 -O0 -g3 -ggdb -fno-eliminate-unused-debug-types -Wall -Wextra -Wpedantic -isystem /usr/include/hdf5/serial -I /build/fast5-0.6.5/src/../include -o f5-mod f5-mod.cpp -L/usr/lib/x86_64-linux-gnu/hdf5/serial -Wl,--rpath=/usr/lib/x86_64-linux-gnu/hdf5/serial -lhdf5 -lpthread -lz -ldl make[2]: Leaving directory '/build/fast5-0.6.5/src' make[1]: Leaving directory '/build/fast5-0.6.5' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python2,python3 --buildsystem=pybuild \ --sourcedirectory=python dh_testroot -O--buildsystem=pybuild -O--sourcedirectory=python dh_prep -O--buildsystem=pybuild -O--sourcedirectory=python dh_auto_install -O--buildsystem=pybuild -O--sourcedirectory=python I: pybuild base:217: /usr/bin/python setup.py install --root /build/fast5-0.6.5/debian/python-fast5 running install running build running build_ext running build_scripts running install_lib creating /build/fast5-0.6.5/debian/python-fast5 creating /build/fast5-0.6.5/debian/python-fast5/usr creating /build/fast5-0.6.5/debian/python-fast5/usr/lib creating /build/fast5-0.6.5/debian/python-fast5/usr/lib/python2.7 creating /build/fast5-0.6.5/debian/python-fast5/usr/lib/python2.7/dist-packages copying /build/fast5-0.6.5/.pybuild/cpython2_2.7_fast5/build/fast5.so -> /build/fast5-0.6.5/debian/python-fast5/usr/lib/python2.7/dist-packages running install_egg_info running egg_info creating fast5.egg-info writing fast5.egg-info/PKG-INFO writing top-level names to fast5.egg-info/top_level.txt writing dependency_links to fast5.egg-info/dependency_links.txt writing manifest file 'fast5.egg-info/SOURCES.txt' reading manifest file 'fast5.egg-info/SOURCES.txt' writing manifest file 'fast5.egg-info/SOURCES.txt' Copying fast5.egg-info to /build/fast5-0.6.5/debian/python-fast5/usr/lib/python2.7/dist-packages/fast5-0.6.2.egg-info Skipping SOURCES.txt running install_scripts creating /build/fast5-0.6.5/debian/python-fast5/usr/bin copying build/scripts-2.7/f5pack -> /build/fast5-0.6.5/debian/python-fast5/usr/bin copying build/scripts-2.7/f5ls -> /build/fast5-0.6.5/debian/python-fast5/usr/bin changing mode of /build/fast5-0.6.5/debian/python-fast5/usr/bin/f5pack to 755 changing mode of /build/fast5-0.6.5/debian/python-fast5/usr/bin/f5ls to 755 I: pybuild base:217: /usr/bin/python3 setup.py install --root /build/fast5-0.6.5/debian/python3-fast5 running install running build running build_ext running build_scripts running install_lib creating /build/fast5-0.6.5/debian/python3-fast5 creating /build/fast5-0.6.5/debian/python3-fast5/usr creating /build/fast5-0.6.5/debian/python3-fast5/usr/lib creating /build/fast5-0.6.5/debian/python3-fast5/usr/lib/python3.7 creating /build/fast5-0.6.5/debian/python3-fast5/usr/lib/python3.7/dist-packages copying /build/fast5-0.6.5/.pybuild/cpython3_3.7_fast5/build/fast5.cpython-37m-x86_64-linux-gnu.so -> /build/fast5-0.6.5/debian/python3-fast5/usr/lib/python3.7/dist-packages running install_egg_info running egg_info writing fast5.egg-info/PKG-INFO writing dependency_links to fast5.egg-info/dependency_links.txt writing top-level names to fast5.egg-info/top_level.txt reading manifest file 'fast5.egg-info/SOURCES.txt' writing manifest file 'fast5.egg-info/SOURCES.txt' Copying fast5.egg-info to /build/fast5-0.6.5/debian/python3-fast5/usr/lib/python3.7/dist-packages/fast5-0.6.2.egg-info Skipping SOURCES.txt running install_scripts creating /build/fast5-0.6.5/debian/python3-fast5/usr/bin copying build/scripts-3.7/f5pack -> /build/fast5-0.6.5/debian/python3-fast5/usr/bin copying build/scripts-3.7/f5ls -> /build/fast5-0.6.5/debian/python3-fast5/usr/bin changing mode of /build/fast5-0.6.5/debian/python3-fast5/usr/bin/f5pack to 755 changing mode of /build/fast5-0.6.5/debian/python3-fast5/usr/bin/f5ls to 755 debian/rules override_dh_install make[1]: Entering directory '/build/fast5-0.6.5' dh_install mkdir -p debian/fast5/usr/bin/ mv debian/python3-fast5/usr/bin/* debian/fast5/usr/bin/ rm -rf debian/python-fast5/usr/bin/ debian/python3-fast5/usr/bin/ make[1]: Leaving directory '/build/fast5-0.6.5' dh_installdocs -O--buildsystem=pybuild -O--sourcedirectory=python dh_installchangelogs -O--buildsystem=pybuild -O--sourcedirectory=python dh_installexamples -O--buildsystem=pybuild -O--sourcedirectory=python dh_python2 -O--buildsystem=pybuild -O--sourcedirectory=python I: dh_python2 fs:343: renaming fast5.so to fast5.x86_64-linux-gnu.so dh_python3 -O--buildsystem=pybuild -O--sourcedirectory=python dh_installinit -O--buildsystem=pybuild -O--sourcedirectory=python dh_perl -O--buildsystem=pybuild -O--sourcedirectory=python dh_link -O--buildsystem=pybuild -O--sourcedirectory=python dh_strip_nondeterminism -O--buildsystem=pybuild -O--sourcedirectory=python debian/rules override_dh_compress make[1]: Entering directory '/build/fast5-0.6.5' cd src && /usr/bin/make clean make[2]: Entering directory '/build/fast5-0.6.5/src' rm -rf f5ls f5ls-full hdf5-mod f5-mod f5dump f5pack make[2]: Leaving directory '/build/fast5-0.6.5/src' dh_compress -X .cpp -X .hpp make[1]: Leaving directory '/build/fast5-0.6.5' dh_fixperms -O--buildsystem=pybuild -O--sourcedirectory=python dh_missing -O--buildsystem=pybuild -O--sourcedirectory=python dh_strip -O--buildsystem=pybuild -O--sourcedirectory=python dh_makeshlibs -O--buildsystem=pybuild -O--sourcedirectory=python dh_shlibdeps -O--buildsystem=pybuild -O--sourcedirectory=python dh_installdeb -O--buildsystem=pybuild -O--sourcedirectory=python dh_gencontrol -O--buildsystem=pybuild -O--sourcedirectory=python dpkg-gencontrol: warning: package python-fast5: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-fast5: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-fast5: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-fast5: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python-fast5: substitution variable ${python:Provides} unused, but is defined dpkg-gencontrol: warning: package python-fast5: substitution variable ${python:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-fast5: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-fast5: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild -O--sourcedirectory=python dh_builddeb -O--buildsystem=pybuild -O--sourcedirectory=python dpkg-deb: building package 'fast5' in '../fast5_0.6.5-2_all.deb'. dpkg-deb: building package 'libfast5-dev' in '../libfast5-dev_0.6.5-2_all.deb'. dpkg-deb: building package 'python-fast5-dbgsym' in '../python-fast5-dbgsym_0.6.5-2_amd64.deb'. dpkg-deb: building package 'python-fast5' in '../python-fast5_0.6.5-2_amd64.deb'. dpkg-deb: building package 'python3-fast5' in '../python3-fast5_0.6.5-2_amd64.deb'. dpkg-deb: building package 'python3-fast5-dbgsym' in '../python3-fast5-dbgsym_0.6.5-2_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../fast5_0.6.5-2_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from fast5-0.6.5/debian/source/options: --extend-diff-ignore=^[^/]+\.egg-info/|python/fast5/fast5.cpp dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1558674 and its subdirectories I: Current time: Wed Dec 1 11:50:04 -12 2021 I: pbuilder-time-stamp: 1638402604 Wed Dec 1 23:50:05 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Wed Dec 1 23:50:05 UTC 2021 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Thu Dec 2 00:00:03 UTC 2021 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Thu Dec 2 00:00:03 UTC 2021 I: fast5_0.6.5-2_amd64.changes: Format: 1.8 Date: Tue, 09 Oct 2018 14:34:41 +0200 Source: fast5 Binary: fast5 libfast5-dev python-fast5 python-fast5-dbgsym python3-fast5 python3-fast5-dbgsym Architecture: all amd64 Version: 0.6.5-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: fast5 - utilities for manipulating Oxford Nanopore Fast5 files libfast5-dev - library for reading Oxford Nanopore Fast5 files -- headers python-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 2 python3-fast5 - library for reading Oxford Nanopore Fast5 files -- Python 3 Closes: 910655 Changes: fast5 (0.6.5-2) unstable; urgency=medium . * Team upload. * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Do not install example binaries to enable reproducible builds (thanks for the patch to Chris Lamb ) Closes: #910655 * Respect DEB_BUILD_OPTIONS in override_dh_auto_test Checksums-Sha1: ca885f33a9a1941984b6f4db7c3ea50416c5cbc6 7592 fast5_0.6.5-2_all.deb df7907f784dc9a8e21de7a32f5687646d7821c49 7960 fast5_0.6.5-2_amd64.buildinfo 0364ce8321afb10831657cad26506dfe8f477226 49360 libfast5-dev_0.6.5-2_all.deb 14db7daea4cfc74feada968ebeb88a2742484957 2685456 python-fast5-dbgsym_0.6.5-2_amd64.deb 67924ec48fd89d8691f673938f562dfaa4712652 216120 python-fast5_0.6.5-2_amd64.deb 8de00b341fc2de485433803535062d538a300759 2704064 python3-fast5-dbgsym_0.6.5-2_amd64.deb 8c62aa497bb80aebd6366010ec340ef140609378 217120 python3-fast5_0.6.5-2_amd64.deb Checksums-Sha256: cfdd84b2b3b5bb2af4015c5c19fc57a15c96956c3fd71fcdf97cd028bc1e0596 7592 fast5_0.6.5-2_all.deb 2e805ce27349127dd434f2ff029093d0a751e17df74d9d27da7b0cff3d04009e 7960 fast5_0.6.5-2_amd64.buildinfo e8b813d7960144be9b77f969451e48f0cc6e2aa19755105a3f639c66a47438f9 49360 libfast5-dev_0.6.5-2_all.deb 1e2827b7b72899b03b4e63583acbd2acd0d0432014b5ca8d3a24958068c42bf4 2685456 python-fast5-dbgsym_0.6.5-2_amd64.deb 2e85ce39e42b4c77da38ee128798a21741c77696c3913419367b81b8f356b35f 216120 python-fast5_0.6.5-2_amd64.deb f65467d70220b9aca56db0f57bec7ccb20f701d19b73b2689898dc850d822bc4 2704064 python3-fast5-dbgsym_0.6.5-2_amd64.deb 180ae1033179a2f03fb0d42b639b645875abb393526ea6b5656739ce4b67799e 217120 python3-fast5_0.6.5-2_amd64.deb Files: 44271d610d01a74928dfd5c782accab0 7592 science optional fast5_0.6.5-2_all.deb 02029ffaa8d2679747dcdde0dd515662 7960 science optional fast5_0.6.5-2_amd64.buildinfo 87d02f6e226391d20d98c4fa7977eb1f 49360 libdevel optional libfast5-dev_0.6.5-2_all.deb d82882f8421ef26c7c0972bab27cb693 2685456 debug optional python-fast5-dbgsym_0.6.5-2_amd64.deb def3a8150862946d6d88549219cb05a7 216120 python optional python-fast5_0.6.5-2_amd64.deb 1725e46f2ed216f0fc8a82752a61db63 2704064 debug optional python3-fast5-dbgsym_0.6.5-2_amd64.deb d7a98e167bbd0f009d450c7becfdcd5a 217120 python optional python3-fast5_0.6.5-2_amd64.deb Thu Dec 2 00:00:04 UTC 2021 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.Qtw4pVeDbA/fast5_0.6.5-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.Qtw4pVeDbA/fast5_0.6.5-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.Qtw4pVeDbA/fast5_0.6.5-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.Qtw4pVeDbA/b1/fast5_0.6.5-2_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.Qtw4pVeDbA/b2/fast5_0.6.5-2_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.291s) 0.291s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.091s) 0.091s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Thu Dec 2 00:00:07 UTC 2021 I: found no differences in the changes files, and a .buildinfo file also exists. Thu Dec 2 00:00:07 UTC 2021 I: fast5 from buster built successfully and reproducibly on amd64. Thu Dec 2 00:00:08 UTC 2021 I: Submitting .buildinfo files to external archives: Thu Dec 2 00:00:08 UTC 2021 I: Submitting 12K b1/fast5_0.6.5-2_amd64.buildinfo.asc Thu Dec 2 00:00:13 UTC 2021 I: Submitting 12K b2/fast5_0.6.5-2_amd64.buildinfo.asc Thu Dec 2 00:00:15 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Dec 2 00:00:15 UTC 2021 I: Done submitting .buildinfo files. Thu Dec 2 00:00:15 UTC 2021 I: Removing signed fast5_0.6.5-2_amd64.buildinfo.asc files: removed './b1/fast5_0.6.5-2_amd64.buildinfo.asc' removed './b2/fast5_0.6.5-2_amd64.buildinfo.asc'