Wed Apr 7 07:25:03 UTC 2021 I: starting to build ea-utils/buster/amd64 on jenkins on '2021-04-07 07:24' Wed Apr 7 07:25:03 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_6/10207/console.log Wed Apr 7 07:25:03 UTC 2021 I: Downloading source for buster/ea-utils=1.1.2+dfsg-5 --2021-04-07 07:25:03-- http://deb.debian.org/debian/pool/main/e/ea-utils/ea-utils_1.1.2+dfsg-5.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2089 (2.0K) Saving to: ‘ea-utils_1.1.2+dfsg-5.dsc’ 0K .. 100% 2.16M=0.001s 2021-04-07 07:25:03 (2.16 MB/s) - ‘ea-utils_1.1.2+dfsg-5.dsc’ saved [2089/2089] Wed Apr 7 07:25:03 UTC 2021 I: ea-utils_1.1.2+dfsg-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: ea-utils Binary: ea-utils Architecture: any Version: 1.1.2+dfsg-5 Maintainer: Debian Med Packaging Team Uploaders: Tim Booth , Andreas Tille Homepage: https://expressionanalysis.github.io/ea-utils/ Standards-Version: 4.1.4 Vcs-Browser: https://salsa.debian.org/med-team/ea-utils Vcs-Git: https://salsa.debian.org/med-team/ea-utils.git Build-Depends: debhelper (>= 11~), libbam-dev, zlib1g-dev, libgsl-dev, libsparsehash-dev (>= 2.0), r-cran-hmisc Package-List: ea-utils deb science optional arch=any Checksums-Sha1: e35e9d1fb9f1320775c14069f561568186a2050c 136824 ea-utils_1.1.2+dfsg.orig.tar.xz e8938cbaca2b983065c832b1aae379ca346355e7 12440 ea-utils_1.1.2+dfsg-5.debian.tar.xz Checksums-Sha256: d19298532ba694a09b194c208d647c7ddd94d79f1cf461431df6c6f4ffd9f93f 136824 ea-utils_1.1.2+dfsg.orig.tar.xz 03ce09139b5318358258963670a429a51da94da762bd9767d0b59c32bfce2454 12440 ea-utils_1.1.2+dfsg-5.debian.tar.xz Files: 167255bd7a4c4910eb2b12b97afca4dc 136824 ea-utils_1.1.2+dfsg.orig.tar.xz b131b6231306babc9d17f9a3cc928160 12440 ea-utils_1.1.2+dfsg-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlriRUQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHpiQ/+O8wagZz+MMdQ/fY+USJPDRS5Fn0AveX6 AXNn6cP12IzIe4u3TJBkFRLbhPbJ06Ce9YkOiPTaY+3JbVaG/+5ZXbpP5JRj/X+w IY3Sq3R+JKfW0WB2R5Xri5X8W0MDB3Ndwpd76BO93p4MqcVxeFIDTEi/TD83CWAn mU94PDtmkmb5ELExR4Pm1RW5v0GxKTIqtsQxuUu5MYskRMTNCat3QwaQlV/39fhz kMXaCEpb/cbrxYnrIMswV3x8hJBoLXm+s/GiDZzML7FYzYD+nCw4hvuqYQaZzEez zONTLo7aof597aXn2I42K17GW7sFN22BkqNSJq37+uwCsPvMwVwushiyyIubkFbt dIHwZ6iLaZAcJUz/KTGBN/ahpioAP+wuGgkEQ6B3D4qeCD9M9lRUweMTKqLHARWV 3nRKMFPektWm54bz8HVov4Phj9DZUA9AF25dXkMEFxuW/AjFtJGOq6c6fVvkXrfp D2GKXSldMX9hf9GEweY6pAVMnNs7SOdHkv0Pa/qDRi38ZwHACP9fZMwniJUS7p/L VQ689T8bLf5oAXxgtgnNEVwGKwIbTYroyVKfZ5QiPg1he9+n7YmlH7SqGlUwVQNn 21IAICLVJYLmMbVLIQlpm/eQUpVN6z1Qb27cH1OyhxuCDDSiXON9I44ialqOq+Ar T4WoRGWJkWw= =umL6 -----END PGP SIGNATURE----- Wed Apr 7 07:25:03 UTC 2021 I: Checking whether the package is not for us Wed Apr 7 07:25:03 UTC 2021 I: Starting 1st build on remote node ionos5-amd64.debian.net. Wed Apr 7 07:25:03 UTC 2021 I: Preparing to do remote build '1' on ionos5-amd64.debian.net. Wed Apr 7 07:26:07 UTC 2021 I: Deleting $TMPDIR on ionos5-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue May 10 01:48:08 -12 2022 I: pbuilder-time-stamp: 1652190488 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ea-utils_1.1.2+dfsg-5.dsc] I: copying [./ea-utils_1.1.2+dfsg.orig.tar.xz] I: copying [./ea-utils_1.1.2+dfsg-5.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Apr 26 09:31:48 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ea-utils_1.1.2+dfsg-5.dsc dpkg-source: info: extracting ea-utils in ea-utils-1.1.2+dfsg dpkg-source: info: unpacking ea-utils_1.1.2+dfsg.orig.tar.xz dpkg-source: info: unpacking ea-utils_1.1.2+dfsg-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying makefile.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying name-space-conflict.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/45761/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='22aaeea449b94882a40b1684bffd6bdd' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='45761' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.Ubdy6kPnyw/pbuilderrc_JwUZ --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.Ubdy6kPnyw/b1 --logfile b1/build.log ea-utils_1.1.2+dfsg-5.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos5-amd64 5.10.0-0.bpo.4-amd64 #1 SMP Debian 5.10.19-1~bpo10+1 (2021-03-13) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Apr 23 02:46 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/45761/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), libbam-dev, zlib1g-dev, libgsl-dev, libsparsehash-dev (>= 2.0), r-cran-hmisc dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libbam-dev; however: Package libbam-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libsparsehash-dev (>= 2.0); however: Package libsparsehash-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-hmisc; however: Package r-cran-hmisc is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbam-dev{a} libblas3{a} libbrotli1{a} libbsd0{a} libc-ares2{a} libcairo2{a} libcroco3{a} libcurl4{a} libdatrie1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libgsl-dev{a} libgsl23{a} libgslcblas0{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libice6{a} libicu63{a} libjbig0{a} libjpeg62-turbo{a} libjs-bootstrap{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-mathjax{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libldap-2.4-2{a} libldap-common{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libnode64{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpsl5{a} libreadline7{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libsparsehash-dev{a} libssh2-1{a} libssl1.1{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff5{a} libtk8.6{a} libtool{a} libuchardet0{a} libuv1{a} libwebp6{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxss1{a} libxt6{a} littler{a} lsb-base{a} m4{a} man-db{a} node-highlight.js{a} node-normalize.css{a} nodejs{a} openssl{a} po-debconf{a} r-base-core{a} r-cran-acepack{a} r-cran-assertthat{a} r-cran-backports{a} r-cran-base64enc{a} r-cran-bindr{a} r-cran-bindrcpp{a} r-cran-checkmate{a} r-cran-chron{a} r-cran-cli{a} r-cran-cluster{a} r-cran-colorspace{a} r-cran-crayon{a} r-cran-data.table{a} r-cran-digest{a} r-cran-dplyr{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-foreign{a} r-cran-formula{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gridextra{a} r-cran-gtable{a} r-cran-highr{a} r-cran-hmisc{a} r-cran-htmltable{a} r-cran-htmltools{a} r-cran-htmlwidgets{a} r-cran-jsonlite{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-lattice{a} r-cran-latticeextra{a} r-cran-lazyeval{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-markdown{a} r-cran-mass{a} r-cran-matrix{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-nnet{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plyr{a} r-cran-purrr{a} r-cran-r6{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-reshape2{a} r-cran-rlang{a} r-cran-rpart{a} r-cran-rstudioapi{a} r-cran-scales{a} r-cran-stringi{a} r-cran-stringr{a} r-cran-survival{a} r-cran-tibble{a} r-cran-tidyr{a} r-cran-tidyselect{a} r-cran-utf8{a} r-cran-viridis{a} r-cran-viridislite{a} r-cran-withr{a} r-cran-xfun{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} ucf{a} unzip{a} x11-common{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common krb5-locales libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libx11-protocol-perl lynx nodejs-doc publicsuffix r-base-dev r-cran-abind r-cran-bit64 r-cran-codetools r-cran-dbi r-cran-domc r-cran-fastmatch r-cran-hexbin r-cran-hms r-cran-lubridate r-cran-mapproj r-cran-mockery r-cran-mockr r-cran-rmarkdown r-cran-rsqlite r-cran-sp r-cran-testit r-cran-testthat r-cran-tikzdevice r-cran-tinytex r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 192 newly installed, 0 to remove and 0 not upgraded. Need to get 137 MB of archives. After unpacking 362 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 node-normalize.css all 8.0.1-3 [12.5 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u5 [1539 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1d-0+deb10u5 [844 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u2 [1258 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u1 [689 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u2 [380 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-1 [164 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 fonts-mathjax all 2.7.4+dfsg-1 [2209 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 libbam-dev amd64 0.1.19-4 [125 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libgfortran5 amd64 8.3.0-6 [581 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 libblas3 amd64 3.8.0-2 [148 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libbrotli1 amd64 1.0.7-2+deb10u1 [269 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 libc-ares2 amd64 1.14.0-1 [85.8 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u1 [294 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u1 [757 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 libcairo2 amd64 1.16.0-4+deb10u1 [688 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u1 [65.8 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u1 [122 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u1 [369 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u1 [158 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-1+deb10u1 [69.1 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 libsasl2-2 amd64 2.1.27+dfsg-1+deb10u1 [106 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 libldap-common all 2.4.47+dfsg-3+deb10u6 [90.0 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 libldap-2.4-2 amd64 2.4.47+dfsg-3+deb10u6 [224 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 libnghttp2-14 amd64 1.36.0-2+deb10u1 [85.0 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 libpsl5 amd64 0.20.2-2 [53.7 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2 [60.5 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 libssh2-1 amd64 1.8.0-2.1 [140 kB] Get: 78 http://deb.debian.org/debian buster/main amd64 libcurl4 amd64 7.64.0-4+deb10u1 [331 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 libdatrie1 amd64 0.2.12-2 [39.3 kB] Get: 80 http://deb.debian.org/debian buster/main amd64 libfribidi0 amd64 1.0.5-3.1+deb10u1 [63.7 kB] Get: 81 http://deb.debian.org/debian buster/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get: 82 http://deb.debian.org/debian buster/main amd64 libgslcblas0 amd64 2.5+dfsg-6 [101 kB] Get: 83 http://deb.debian.org/debian buster/main amd64 libgsl23 amd64 2.5+dfsg-6 [880 kB] Get: 84 http://deb.debian.org/debian buster/main amd64 libgsl-dev amd64 2.5+dfsg-6 [1063 kB] Get: 85 http://deb.debian.org/debian buster/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get: 86 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get: 87 http://deb.debian.org/debian buster/main amd64 x11-common all 1:7.7+19 [251 kB] Get: 88 http://deb.debian.org/debian buster/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get: 89 http://deb.debian.org/debian buster/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get: 90 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get: 91 http://deb.debian.org/debian buster/main amd64 libjs-bootstrap all 3.4.1+dfsg-1 [173 kB] Get: 92 http://deb.debian.org/debian buster/main amd64 libjs-highlight.js all 9.12.0+dfsg1-4+deb10u1 [300 kB] Get: 93 http://deb.debian.org/debian buster/main amd64 libjs-jquery all 3.3.1~dfsg-3+deb10u1 [332 kB] Get: 94 http://deb.debian.org/debian buster/main amd64 libjs-jquery-datatables all 1.10.19+dfsg-1 [136 kB] Get: 95 http://deb.debian.org/debian buster/main amd64 libjs-mathjax all 2.7.4+dfsg-1 [5658 kB] Get: 96 http://deb.debian.org/debian buster/main amd64 liblapack3 amd64 3.8.0-2 [2110 kB] Get: 97 http://deb.debian.org/debian buster/main amd64 libuv1 amd64 1.24.1-1 [110 kB] Get: 98 http://deb.debian.org/debian buster/main amd64 libnode64 amd64 10.24.0~dfsg-1~deb10u1 [5631 kB] Get: 99 http://deb.debian.org/debian buster/main amd64 libthai-data all 0.1.28-2 [170 kB] Get: 100 http://deb.debian.org/debian buster/main amd64 libthai0 amd64 0.1.28-2 [54.1 kB] Get: 101 http://deb.debian.org/debian buster/main amd64 libpango-1.0-0 amd64 1.42.4-8~deb10u1 [186 kB] Get: 102 http://deb.debian.org/debian buster/main amd64 libpangoft2-1.0-0 amd64 1.42.4-8~deb10u1 [68.3 kB] Get: 103 http://deb.debian.org/debian buster/main amd64 libpangocairo-1.0-0 amd64 1.42.4-8~deb10u1 [55.7 kB] Get: 104 http://deb.debian.org/debian buster/main amd64 libpaper1 amd64 1.1.28 [21.3 kB] Get: 105 http://deb.debian.org/debian buster/main amd64 libpaper-utils amd64 1.1.28 [18.0 kB] Get: 106 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get: 107 http://deb.debian.org/debian buster/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 108 http://deb.debian.org/debian buster/main amd64 libsparsehash-dev all 2.0.2-1 [76.9 kB] Get: 109 http://deb.debian.org/debian buster/main amd64 libtcl8.6 amd64 8.6.9+dfsg-2 [1005 kB] Get: 110 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2 [263 kB] Get: 111 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u2 [271 kB] Get: 112 http://deb.debian.org/debian buster/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get: 113 http://deb.debian.org/debian buster/main amd64 libxss1 amd64 1:1.2.3-1 [17.8 kB] Get: 114 http://deb.debian.org/debian buster/main amd64 libtk8.6 amd64 8.6.9-2 [768 kB] Get: 115 http://deb.debian.org/debian buster/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB] Get: 116 http://deb.debian.org/debian buster/main amd64 zip amd64 3.0-11+b1 [234 kB] Get: 117 http://deb.debian.org/debian buster/main amd64 unzip amd64 6.0-23+deb10u2 [172 kB] Get: 118 http://deb.debian.org/debian buster/main amd64 xdg-utils all 1.1.3-1+deb10u1 [73.7 kB] Get: 119 http://deb.debian.org/debian buster/main amd64 r-base-core amd64 3.5.2-1 [23.9 MB] Get: 120 http://deb.debian.org/debian buster/main amd64 r-cran-littler amd64 0.3.6-1 [308 kB] Get: 121 http://deb.debian.org/debian buster/main amd64 littler all 0.3.6-1 [13.6 kB] Get: 122 http://deb.debian.org/debian buster/main amd64 nodejs amd64 10.24.0~dfsg-1~deb10u1 [87.3 kB] Get: 123 http://deb.debian.org/debian buster/main amd64 node-highlight.js all 9.12.0+dfsg1-4+deb10u1 [237 kB] Get: 124 http://deb.debian.org/debian buster/main amd64 r-cran-acepack amd64 1.4.1-2+b4 [59.8 kB] Get: 125 http://deb.debian.org/debian buster/main amd64 r-cran-assertthat all 0.2.0-2 [54.4 kB] Get: 126 http://deb.debian.org/debian buster/main amd64 r-cran-backports amd64 1.1.3-1 [55.6 kB] Get: 127 http://deb.debian.org/debian buster/main amd64 r-cran-base64enc amd64 0.1-3-2 [27.7 kB] Get: 128 http://deb.debian.org/debian buster/main amd64 r-cran-bindr all 0.1.1-2 [18.1 kB] Get: 129 http://deb.debian.org/debian buster/main amd64 r-cran-pkgkitten all 0.1.4-2 [22.4 kB] Get: 130 http://deb.debian.org/debian buster/main amd64 r-cran-rcpp amd64 1.0.0-1 [3381 kB] Get: 131 http://deb.debian.org/debian buster/main amd64 r-cran-bindrcpp amd64 0.2.2-2 [71.4 kB] Get: 132 http://deb.debian.org/debian buster/main amd64 r-cran-checkmate amd64 1.9.1-1 [595 kB] Get: 133 http://deb.debian.org/debian buster/main amd64 r-cran-chron amd64 2.3-53-1 [193 kB] Get: 134 http://deb.debian.org/debian buster/main amd64 r-cran-crayon all 1.3.4-4 [750 kB] Get: 135 http://deb.debian.org/debian buster/main amd64 r-cran-cli all 1.0.1-1 [519 kB] Get: 136 http://deb.debian.org/debian buster/main amd64 r-cran-cluster amd64 2.0.7-1-1+b3 [531 kB] Get: 137 http://deb.debian.org/debian buster/main amd64 r-cran-colorspace amd64 1.4-0+dfsg-1 [1580 kB] Get: 138 http://deb.debian.org/debian buster/main amd64 r-cran-data.table amd64 1.12.0+dfsg-1 [1359 kB] Get: 139 http://deb.debian.org/debian buster/main amd64 r-cran-digest amd64 0.6.18-1 [136 kB] Get: 140 http://deb.debian.org/debian buster/main amd64 r-cran-glue amd64 1.3.0-1 [92.0 kB] Get: 141 http://deb.debian.org/debian buster/main amd64 r-cran-magrittr all 1.5-5 [152 kB] Get: 142 http://deb.debian.org/debian buster/main amd64 r-cran-pkgconfig all 2.0.2-1 [19.4 kB] Get: 143 http://deb.debian.org/debian buster/main amd64 r-cran-r6 all 2.4.0-1 [75.2 kB] Get: 144 http://deb.debian.org/debian buster/main amd64 r-cran-rlang amd64 0.3.1-2 [1083 kB] Get: 145 http://deb.debian.org/debian buster/main amd64 r-cran-fansi amd64 0.4.0-1 [339 kB] Get: 146 http://deb.debian.org/debian buster/main amd64 r-cran-utf8 amd64 1.1.4-1+b1 [131 kB] Get: 147 http://deb.debian.org/debian buster/main amd64 r-cran-pillar all 1.3.1-1 [203 kB] Get: 148 http://deb.debian.org/debian buster/main amd64 r-cran-tibble amd64 2.0.1-1 [656 kB] Get: 149 http://deb.debian.org/debian buster/main amd64 r-cran-purrr amd64 0.3.0-1 [384 kB] Get: 150 http://deb.debian.org/debian buster/main amd64 r-cran-tidyselect amd64 0.2.5-1 [117 kB] Get: 151 http://deb.debian.org/debian buster/main amd64 r-cran-dplyr amd64 0.7.8-1 [1693 kB] Get: 152 http://deb.debian.org/debian buster/main amd64 r-cran-evaluate all 0.13-1 [78.5 kB] Get: 153 http://deb.debian.org/debian buster/main amd64 r-cran-foreign amd64 0.8.71-1 [245 kB] Get: 154 http://deb.debian.org/debian buster/main amd64 r-cran-formula all 1.2-3-2 [178 kB] Get: 155 http://deb.debian.org/debian buster/main amd64 r-cran-gtable all 0.2.0-3 [93.6 kB] Get: 156 http://deb.debian.org/debian buster/main amd64 r-cran-lazyeval amd64 0.2.1-3 [138 kB] Get: 157 http://deb.debian.org/debian buster/main amd64 r-cran-mass amd64 7.3-51.1-1 [1100 kB] Get: 158 http://deb.debian.org/debian buster/main amd64 r-cran-lattice amd64 0.20-38-1 [1121 kB] Get: 159 http://deb.debian.org/debian buster/main amd64 r-cran-nlme amd64 3.1.137-1+b3 [2223 kB] Get: 160 http://deb.debian.org/debian buster/main amd64 r-cran-matrix amd64 1.2-15-1 [3421 kB] Get: 161 http://deb.debian.org/debian buster/main amd64 r-cran-mgcv amd64 1.8-27-1 [2665 kB] Get: 162 http://deb.debian.org/debian buster/main amd64 r-cran-plyr amd64 1.8.4-2 [813 kB] Get: 163 http://deb.debian.org/debian buster/main amd64 r-cran-stringi amd64 1.2.4-2 [8702 kB] Get: 164 http://deb.debian.org/debian buster/main amd64 r-cran-stringr all 1.4.0-1 [198 kB] Get: 165 http://deb.debian.org/debian buster/main amd64 r-cran-reshape2 amd64 1.4.3-2 [114 kB] Get: 166 http://deb.debian.org/debian buster/main amd64 r-cran-labeling all 0.3-3 [61.4 kB] Get: 167 http://deb.debian.org/debian buster/main amd64 r-cran-munsell all 0.5.0-1 [235 kB] Get: 168 http://deb.debian.org/debian buster/main amd64 r-cran-rcolorbrewer all 1.1-2-2 [54.3 kB] Get: 169 http://deb.debian.org/debian buster/main amd64 r-cran-viridislite all 0.3.0-3 [59.2 kB] Get: 170 http://deb.debian.org/debian buster/main amd64 r-cran-scales amd64 1.0.0-2 [546 kB] Get: 171 http://deb.debian.org/debian buster/main amd64 r-cran-withr all 2.1.2-3 [152 kB] Get: 172 http://deb.debian.org/debian buster/main amd64 r-cran-ggplot2 all 3.1.0-1 [3740 kB] Get: 173 http://deb.debian.org/debian buster/main amd64 r-cran-gridextra all 2.3-2 [1023 kB] Get: 174 http://deb.debian.org/debian buster/main amd64 r-cran-highr all 0.7+dfsg-1 [39.7 kB] Get: 175 http://deb.debian.org/debian buster/main amd64 r-cran-survival amd64 2.43-3-1 [4637 kB] Get: 176 http://deb.debian.org/debian buster/main amd64 r-cran-latticeextra amd64 0.6-28-2+b2 [2182 kB] Get: 177 http://deb.debian.org/debian buster/main amd64 r-cran-rpart amd64 4.1-13-1+b1 [890 kB] Get: 178 http://deb.debian.org/debian buster/main amd64 r-cran-nnet amd64 7.3-12-2+b2 [111 kB] Get: 179 http://deb.debian.org/debian buster/main amd64 r-cran-mime amd64 0.6-1 [35.1 kB] Get: 180 http://deb.debian.org/debian buster/main amd64 r-cran-markdown amd64 0.9+dfsg-1 [126 kB] Get: 181 http://deb.debian.org/debian buster/main amd64 r-cran-yaml amd64 2.2.0-1 [101 kB] Get: 182 http://deb.debian.org/debian buster/main amd64 r-cran-xfun all 0.4-1 [145 kB] Get: 183 http://deb.debian.org/debian buster/main amd64 r-cran-knitr all 1.21+dfsg-2 [855 kB] Get: 184 http://deb.debian.org/debian buster/main amd64 r-cran-htmltools amd64 0.3.6-2 [170 kB] Get: 185 http://deb.debian.org/debian buster/main amd64 r-cran-jsonlite amd64 1.6+dfsg-1 [437 kB] Get: 186 http://deb.debian.org/debian buster/main amd64 r-cran-htmlwidgets all 1.3+dfsg-1 [111 kB] Get: 187 http://deb.debian.org/debian buster/main amd64 r-cran-rstudioapi all 0.9.0-1 [168 kB] Get: 188 http://deb.debian.org/debian buster/main amd64 r-cran-tidyr amd64 0.8.2-1 [421 kB] Get: 189 http://deb.debian.org/debian buster/main amd64 r-cran-htmltable all 1.13.1-1 [303 kB] Get: 190 http://deb.debian.org/debian buster/main amd64 r-cran-viridis all 0.5.1-2 [1846 kB] Get: 191 http://deb.debian.org/debian buster/main amd64 r-cran-hmisc amd64 4.2-0-1 [3035 kB] Get: 192 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1 [214 kB] Fetched 137 MB in 2s (54.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u1) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up libcurl4:amd64 (7.64.0-4+deb10u1) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u1) ... Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpaper1:amd64 (1.1.28) ... Creating config file /etc/papersize with new version Setting up node-highlight.js (9.12.0+dfsg1-4+deb10u1) ... Setting up liblapack3:amd64 (3.8.0-2) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libpaper-utils (1.1.28) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxt6:amd64 (1:1.1.5-1+b3) ... Setting up libxss1:amd64 (1:1.2.3-1) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.2-2) ... Setting up po-debconf (1.0.21) ... Setting up libtk8.6:amd64 (8.6.9-2) ... Setting up libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libcairo2:amd64 (1.16.0-4+deb10u1) ... Setting up libpangoft2-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libpangocairo-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up r-base-core (3.5.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.3.4-4) ... Setting up r-cran-gtable (0.2.0-3) ... Setting up r-cran-labeling (0.3-3) ... Setting up r-cran-lattice (0.20-38-1) ... Setting up r-cran-nlme (3.1.137-1+b3) ... Setting up r-cran-formula (1.2-3-2) ... Setting up r-cran-viridislite (0.3.0-3) ... Setting up r-cran-cluster (2.0.7-1-1+b3) ... Setting up r-cran-nnet (7.3-12-2+b2) ... Setting up r-cran-lazyeval (0.2.1-3) ... Setting up r-cran-r6 (2.4.0-1) ... Setting up r-cran-pkgkitten (0.1.4-2) ... Setting up r-cran-chron (2.3-53-1) ... Setting up r-cran-magrittr (1.5-5) ... Setting up r-cran-littler (0.3.6-1) ... Setting up r-cran-rcpp (1.0.0-1) ... Setting up r-cran-bindr (0.1.1-2) ... Setting up r-cran-rlang (0.3.1-2) ... Setting up r-cran-assertthat (0.2.0-2) ... Setting up littler (0.3.6-1) ... Setting up r-cran-bindrcpp (0.2.2-2) ... Setting up r-cran-xfun (0.4-1) ... Setting up r-cran-withr (2.1.2-3) ... Setting up r-cran-backports (1.1.3-1) ... Setting up r-cran-mime (0.6-1) ... Setting up r-cran-base64enc (0.1-3-2) ... Setting up r-cran-digest (0.6.18-1) ... Setting up r-cran-yaml (2.2.0-1) ... Setting up r-cran-evaluate (0.13-1) ... Setting up r-cran-highr (0.7+dfsg-1) ... Setting up r-cran-fansi (0.4.0-1) ... Setting up r-cran-mass (7.3-51.1-1) ... Setting up r-cran-checkmate (1.9.1-1) ... Setting up r-cran-acepack (1.4.1-2+b4) ... Setting up r-cran-data.table (1.12.0+dfsg-1) ... Setting up r-cran-glue (1.3.0-1) ... Setting up r-cran-foreign (0.8.71-1) ... Setting up r-cran-cli (1.0.1-1) ... Setting up r-cran-jsonlite (1.6+dfsg-1) ... Setting up r-cran-rstudioapi (0.9.0-1) ... Setting up r-cran-pkgconfig (2.0.2-1) ... Setting up r-cran-utf8 (1.1.4-1+b1) ... Setting up r-cran-colorspace (1.4-0+dfsg-1) ... Setting up r-cran-stringi (1.2.4-2) ... Setting up r-cran-markdown (0.9+dfsg-1) ... Setting up r-cran-plyr (1.8.4-2) ... Setting up r-cran-rcolorbrewer (1.1-2-2) ... Setting up r-cran-gridextra (2.3-2) ... Setting up r-cran-purrr (0.3.0-1) ... Setting up r-cran-matrix (1.2-15-1) ... Setting up r-cran-htmltools (0.3.6-2) ... Setting up r-cran-mgcv (1.8-27-1) ... Setting up r-cran-pillar (1.3.1-1) ... Setting up r-cran-stringr (1.4.0-1) ... Setting up r-cran-munsell (0.5.0-1) ... Setting up r-cran-tibble (2.0.1-1) ... Setting up r-cran-survival (2.43-3-1) ... Setting up r-cran-latticeextra (0.6-28-2+b2) ... Setting up r-cran-htmlwidgets (1.3+dfsg-1) ... Setting up r-cran-tidyselect (0.2.5-1) ... Setting up r-cran-reshape2 (1.4.3-2) ... Setting up r-cran-scales (1.0.0-2) ... Setting up r-cran-knitr (1.21+dfsg-2) ... Setting up r-cran-dplyr (0.7.8-1) ... Setting up r-cran-ggplot2 (3.1.0-1) ... Setting up r-cran-rpart (4.1-13-1+b1) ... Setting up r-cran-viridis (0.5.1-2) ... Setting up r-cran-tidyr (0.8.2-1) ... Setting up r-cran-htmltable (1.13.1-1) ... Setting up r-cran-hmisc (4.2-0-1) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/ea-utils-1.1.2+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package ea-utils dpkg-buildpackage: info: source version 1.1.2+dfsg-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_auto_clean make -j16 clean make[1]: Entering directory '/build/ea-utils-1.1.2+dfsg' rm -f *.o fastq-mcf fastq-multx fastq-join fastq-stats fastq-clipper sam-stats varcall make[1]: Leaving directory '/build/ea-utils-1.1.2+dfsg' dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j16 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/ea-utils-1.1.2+dfsg' g++ -g -O2 -ffile-prefix-map=/build/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security fastq-lib.cpp -o fastq-mcf fastq-mcf.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -ffile-prefix-map=/build/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security fastq-lib.cpp -o fastq-multx fastq-multx.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -ffile-prefix-map=/build/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security fastq-lib.cpp -o fastq-join fastq-join.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -ffile-prefix-map=/build/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security fastq-lib.cpp gcModel.c -o fastq-stats fastq-stats.cpp -Wl,-z,relro -Wl,-z,now g++ -g -O2 -ffile-prefix-map=/build/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security fastq-lib.cpp -o fastq-clipper fastq-clipper.c -Wl,-z,relro -Wl,-z,now g++ -g -O2 -ffile-prefix-map=/build/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security fastq-lib.cpp sam-stats.cpp -lbam -lz -lpthread -o sam-stats -Wl,-z,relro -Wl,-z,now g++ -g -O2 -ffile-prefix-map=/build/ea-utils-1.1.2+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security fastq-lib.cpp tidx/tidx-lib.cpp -o varcall varcall.cpp -lgsl -lgslcblas -Wl,-z,relro -Wl,-z,now fastq-mcf.c: In function 'int main(int, char**)': fastq-mcf.c:633:23: warning: too many arguments for format [-Wformat-extra-args] fprintf(stderr, "Warning, corrupt quality for sequence: %s", s, q); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ fastq-mcf.c:849:21: warning: too many arguments for format [-Wformat-extra-args] fprintf(fstat, ", warning end was not reliable\n", ad[a].id, ad[a].seq); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sam-stats.cpp: In function 'int main(int, char**)': sam-stats.cpp:229:29: warning: use of an operand of type 'bool' in 'operator++' is deprecated [-Wdeprecated] case 'D': ++trackdup; break; ^~~~~~~~ fastq-mcf.c: In function 'bool arg_int_pair(const char*, int&, int&)': fastq-mcf.c:1657:6: warning: control reaches end of non-void function [-Wreturn-type] b=atoi(strchr(optarg, ',')+1); ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ fastq-stats.cpp: In function 'int main(int, char**)': fastq-stats.cpp:183:16: warning: use of an operand of type 'bool' in 'operator++' is deprecated [-Wdeprecated] case 'D': ++nodup; break; ^~~~~ fastq-stats.cpp:184:16: warning: use of an operand of type 'bool' in 'operator++' is deprecated [-Wdeprecated] case 'd': ++debug; break; ^~~~~ fastq-stats.cpp:187:40: warning: use of an operand of type 'bool' in 'operator++' is deprecated [-Wdeprecated] case 'x': fastx_outfile = optarg; ++fastx; break; ^~~~~ fastq-stats.cpp:188:42: warning: use of an operand of type 'bool' in 'operator++' is deprecated [-Wdeprecated] case 'b': brkdown_outfile = optarg; ++brkdown; break; ^~~~~~~ fastq-stats.cpp:189:16: warning: use of an operand of type 'bool' in 'operator++' is deprecated [-Wdeprecated] case 'L': ++len_hist; lenhist_outfile = optarg; break; ^~~~~~~~ fastq-stats.cpp:190:37: warning: use of an operand of type 'bool' in 'operator++' is deprecated [-Wdeprecated] case 'g': gc_outfile = optarg; ++gc; break; ^~ sam-stats.cpp: In member function 'int ibucket::operator[](int) const': sam-stats.cpp:140:2: warning: control reaches end of non-void function [-Wreturn-type] } ^ varcall.cpp: In member function 'vfinal& vfinal::operator=(const vfinal&)': varcall.cpp:128:122: warning: no return statement in function returning non-void [-Wreturn-type] vfinal & operator=(vfinal const&x) {max_idl_seq=x.max_idl_seq; max_idl_cnt=x.max_idl_cnt; padj=x.padj; pcall=x.pcall;} ^ varcall.cpp: In member function 'virtual void VarStatVisitor::Visit(PileupSummary&)': varcall.cpp:1584:19: warning: too many arguments for format [-Wformat-extra-args] fprintf(noise_f,"%d\t%c\t%f\t%f\n", p.Depth, pbase, noise, qnoise, mnqual); ^~~~~~~~~~~~~~~~~~ make[1]: Leaving directory '/build/ea-utils-1.1.2+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/ea-utils-1.1.2+dfsg' dh_auto_install -- PREFIX='${DESTDIR}/usr' make -j16 install DESTDIR=/build/ea-utils-1.1.2\+dfsg/debian/ea-utils AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=\${DESTDIR}/usr make[2]: Entering directory '/build/ea-utils-1.1.2+dfsg' mkdir -p /build/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin cp fastq-clipper /build/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-clipper cp fastq-mcf /build/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-mcf cp fastq-multx /build/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-multx cp fastq-join /build/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-join cp fastq-stats /build/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastq-stats cp sam-stats /build/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/sam-stats cp varcall /build/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/varcall cp fastx-graph /build/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/fastx-graph cp determine-phred /build/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/determine-phred cp randomFQ /build/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/randomFQ cp alc /build/ea-utils-1.1.2+dfsg/debian/ea-utils/usr/bin/alc make[2]: Leaving directory '/build/ea-utils-1.1.2+dfsg' mv debian/ea-utils/usr/bin/alc debian/ea-utils/usr/bin/ea-alc make[1]: Leaving directory '/build/ea-utils-1.1.2+dfsg' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/ea-utils/usr/bin/varcall was not linked against libgslcblas.so.0 (it uses none of the library's symbols) dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package ea-utils: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package ea-utils: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'ea-utils' in '../ea-utils_1.1.2+dfsg-5_amd64.deb'. dpkg-deb: building package 'ea-utils-dbgsym' in '../ea-utils-dbgsym_1.1.2+dfsg-5_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../ea-utils_1.1.2+dfsg-5_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/45761 and its subdirectories I: Current time: Tue May 10 01:49:10 -12 2022 I: pbuilder-time-stamp: 1652190550 Wed Apr 7 07:26:08 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos11-amd64.debian.net. Wed Apr 7 07:26:08 UTC 2021 I: Preparing to do remote build '2' on ionos11-amd64.debian.net. Wed Apr 7 07:27:31 UTC 2021 I: Deleting $TMPDIR on ionos11-amd64.debian.net. Wed Apr 7 07:27:31 UTC 2021 I: ea-utils_1.1.2+dfsg-5_amd64.changes: Format: 1.8 Date: Thu, 26 Apr 2018 23:24:49 +0200 Source: ea-utils Binary: ea-utils ea-utils-dbgsym Architecture: amd64 Version: 1.1.2+dfsg-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: ea-utils - command-line tools for processing biological sequencing data Changes: ea-utils (1.1.2+dfsg-5) unstable; urgency=medium . [ Andreas Tille ] * Point watch file to github since upstream is now tagging releases * Build-Depends: r-cran-hmisc to enable testing migration since this Dependency does not exist on all architectures * Standards-Version: 4.1.4 * Point Vcs-fields to Salsa * debhelper 11 * do not parse d/changelog . [ Steffen Moeller ] * d/u/metadata: - added RRIDs - yamllint clean Checksums-Sha1: 9391416900ec9e70d9e1326737a96d5ea9a5ca05 1883784 ea-utils-dbgsym_1.1.2+dfsg-5_amd64.deb ba77728b8f37e0c61ecf393225bcc193c8211776 9832 ea-utils_1.1.2+dfsg-5_amd64.buildinfo 16d4cd624d1385c22c48b7f5c226cf1c94b31c02 225456 ea-utils_1.1.2+dfsg-5_amd64.deb Checksums-Sha256: 72890ee2e069d9e7f2c9158d6e01113b4ae629c8193423f9e54b1c9cb27f3241 1883784 ea-utils-dbgsym_1.1.2+dfsg-5_amd64.deb e021f513262f9635a3f344eb81ab8351fa700ddf2d254b4da95916e9df29ca47 9832 ea-utils_1.1.2+dfsg-5_amd64.buildinfo 68e200d91c0d652497170dbf8e9dfe3de5530815a375f7042fb6e03663f58d61 225456 ea-utils_1.1.2+dfsg-5_amd64.deb Files: 9fb77f2f0577e647462a490df0b6c1cb 1883784 debug optional ea-utils-dbgsym_1.1.2+dfsg-5_amd64.deb 8a84330c766864e9d5e974e202045901 9832 science optional ea-utils_1.1.2+dfsg-5_amd64.buildinfo 543fb45ab5250c179395f51caeb03a88 225456 science optional ea-utils_1.1.2+dfsg-5_amd64.deb Wed Apr 7 07:27:33 UTC 2021 I: diffoscope 172 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.Ubdy6kPnyw/ea-utils_1.1.2+dfsg-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.Ubdy6kPnyw/ea-utils_1.1.2+dfsg-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.Ubdy6kPnyw/ea-utils_1.1.2+dfsg-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.Ubdy6kPnyw/b1/ea-utils_1.1.2+dfsg-5_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.Ubdy6kPnyw/b2/ea-utils_1.1.2+dfsg-5_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.301s) 0.301s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.055s) 0.055s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Wed Apr 7 07:27:35 UTC 2021 I: diffoscope 172 found no differences in the changes files, and a .buildinfo file also exists. Wed Apr 7 07:27:35 UTC 2021 I: ea-utils from buster built successfully and reproducibly on amd64. Wed Apr 7 07:27:37 UTC 2021 I: Submitting .buildinfo files to external archives: Wed Apr 7 07:27:37 UTC 2021 I: Submitting 12K b1/ea-utils_1.1.2+dfsg-5_amd64.buildinfo.asc Wed Apr 7 07:27:39 UTC 2021 I: Submitting 12K b2/ea-utils_1.1.2+dfsg-5_amd64.buildinfo.asc Wed Apr 7 07:27:39 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Apr 7 07:27:39 UTC 2021 I: Done submitting .buildinfo files. Wed Apr 7 07:27:39 UTC 2021 I: Removing signed ea-utils_1.1.2+dfsg-5_amd64.buildinfo.asc files: removed './b1/ea-utils_1.1.2+dfsg-5_amd64.buildinfo.asc' removed './b2/ea-utils_1.1.2+dfsg-5_amd64.buildinfo.asc'