Thu Dec 24 22:03:56 UTC 2020 I: starting to build dialign/buster/amd64 on jenkins on '2020-12-24 22:03' Thu Dec 24 22:03:56 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_9/205/console.log Thu Dec 24 22:03:56 UTC 2020 I: Downloading source for buster/dialign=2.2.1-10 --2020-12-24 22:03:56-- http://deb.debian.org/debian/pool/main/d/dialign/dialign_2.2.1-10.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1977 (1.9K) Saving to: ‘dialign_2.2.1-10.dsc’ 0K . 100% 161M=0s 2020-12-24 22:03:56 (161 MB/s) - ‘dialign_2.2.1-10.dsc’ saved [1977/1977] Thu Dec 24 22:03:56 UTC 2020 I: dialign_2.2.1-10.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: dialign Binary: dialign Architecture: any Version: 2.2.1-10 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: http://dialign.gobics.de/ Standards-Version: 4.2.0 Vcs-Browser: https://salsa.debian.org/med-team/dialign Vcs-Git: https://salsa.debian.org/med-team/dialign.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~) Package-List: dialign deb science optional arch=any Checksums-Sha1: 2b5b13f57a2067d122afd54916497cfb5ad7b42f 209015 dialign_2.2.1.orig.tar.gz 3408adbc198581b214888c9b02293a2482640255 12164 dialign_2.2.1-10.debian.tar.xz Checksums-Sha256: 046361bb4ca6e4ab2ac5e634cfcd673f964a887006c09c1b8bd3310fac86f519 209015 dialign_2.2.1.orig.tar.gz e0022710404dccf0fc9cc8791c640ecab314e58e1975f3a78b44abc44c279d00 12164 dialign_2.2.1-10.debian.tar.xz Files: 3ea891efbaac8572f9ff1dc7f1d3c5f8 209015 dialign_2.2.1.orig.tar.gz d00b6b141a79c7773516b167d73ac68e 12164 dialign_2.2.1-10.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlt5SGcRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH0Yg//V76jFLCwmdKcQ+n/N/nIWLHBIO/IhZUm ewazFaEn4nUv9aT1hwDGdHWOB+LEXxHAQ3H3e7w3DjiPKODnEgXDpAuQPlrDMqKa 0q/h6ekKyhlzNAD//L3f3WOZQ8truXyGqFUDxGG5HJPo3yT8oYU2ebSE/faTpQAQ /f8Bbw21avyle4QSwDOzHc8de6ID+4js64SCC4lP1CTGx+L5TUm7e05KqKBWvX/U 9QLVOjV6x0YNOq/qMaxGDRWhzrQ5hfvQzEbjYcTBSl4RVEr/NXzoIRFwX16WJpwo a2a5LxXi6gM87GfkiE5nlhb2o0oPE/xruOOXb/T/tZk7ya1hEA50lwYzYqhz/fxC 2dVOLhDTKdy/BBAhFO+8esSJenypI8qZmEYS85Z7DcTBL8ximPPSmn3zyCkqsHt9 8BOp4jn/ZKUQB4Fw20szwKuyDM2LbKnD8qAv9JG6SU5us1B/pJh/0aR2TOGwG8iS YtYzK9BKniUS0GumOFYZzFy0KwmXCVZUybbO/uX2hNMhW8/BI3h25nOb302XITCm SQxO8i/Xm78PQs5f53pJ55LZc7e/kBMxlTF1TMhNshCwYb88FQXsfSi8CwOmNYPd s3YETQOmQQ0GhT1vKdf6Lh56Q57F37tbemyxiTiRGH40GRrv9vReel5RNa9S1Pq1 bAiceV5YL9U= =wQ9+ -----END PGP SIGNATURE----- Thu Dec 24 22:03:56 UTC 2020 I: Checking whether the package is not for us Thu Dec 24 22:03:56 UTC 2020 I: Starting 1st build on remote node ionos1-amd64.debian.net. Thu Dec 24 22:03:56 UTC 2020 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Thu Dec 24 22:04:22 UTC 2020 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 24 10:03:58 -12 2020 I: pbuilder-time-stamp: 1608847438 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [dialign_2.2.1-10.dsc] I: copying [./dialign_2.2.1.orig.tar.gz] I: copying [./dialign_2.2.1-10.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Aug 18 22:37:27 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./dialign_2.2.1-10.dsc dpkg-source: info: extracting dialign in dialign-2.2.1 dpkg-source: info: unpacking dialign_2.2.1.orig.tar.gz dpkg-source: info: unpacking dialign_2.2.1-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 20_no_DIALIGN2_DIR.patch dpkg-source: info: applying 30_local_doc.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying fix_excess_argument.patch dpkg-source: info: applying spelling.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/5777/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='00a349a6f0d046edb0bc328422c4bb68' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='5777' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.hjpXi3nO3J/pbuilderrc_B4Qh --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.hjpXi3nO3J/b1 --logfile b1/build.log dialign_2.2.1-10.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 4.19.0-13-amd64 #1 SMP Debian 4.19.160-2 (2020-11-28) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Dec 20 20:25 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/5777/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 19.0 MB of archives. After unpacking 69.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u1 [242 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u1 [117 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u1 [66.4 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u2 [1258 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u1 [689 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Fetched 19.0 MB in 0s (47.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u1_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u1_amd64.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../11-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. 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Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/dialign-2.2.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package dialign dpkg-buildpackage: info: source version 2.2.1-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/dialign-2.2.1' find src/ -name '*.o' -delete dh_clean src/dialign2-2 make[1]: Leaving directory '/build/dialign-2.2.1' debian/rules build dh build dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/dialign-2.2.1' ## CFLAGS = -c -I-DCONS -O2 dh_auto_build --sourcedirectory=src cd src && make -j15 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/dialign-2.2.1/src' gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS dialign.c gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS functions.c gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS para.c gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS output.c gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS wgt.c gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS anchor.c gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS regex.c gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS input.c gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS frag_chain.c gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS -Wdate-time -D_FORTIFY_SOURCE=2 -c -o alig_graph_closure.o alig_graph_closure.c gcc -g -O2 -ffile-prefix-map=/build/dialign-2.2.1=. -fstack-protector-strong -Wformat -Werror=format-security -c -O -I-DCONS -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pratique.o pratique.c regex.c:154:1: warning: return type defaults to 'int' [-Wimplicit-int] seq_parse( char *mot_regex ) { ^~~~~~~~~ output.c:64:9: warning: type defaults to 'int' in declaration of 'plot_calc' [-Wimplicit-int] extern plot_calc( int num , int e_len, float *w_count, float *pl, ^~~~~~~~~ output.c:66:9: warning: type defaults to 'int' in declaration of 'wgt_type_count' [-Wimplicit-int] extern wgt_type_count( int num , int e_len, int *plus_cnt, int *minus_cnt, ^~~~~~~~~~~~~~ input.c: In function 'exclude_frg_read': input.c:65:5: warning: implicit declaration of function 'erreur'; did you mean 'perror'? [-Wimplicit-function-declaration] erreur("\n\n cannot find file with excluded fragments \n\n\n"); ^~~~~~ perror dialign.c:261:1: warning: return type defaults to 'int' [-Wimplicit-int] main(int argc, char **argv) ^~~~ functions.c:856:1: warning: return type defaults to 'int' [-Wimplicit-int] wgt_type_count( int num , int e_len, int *plus_cnt, int *minus_cnt, ^~~~~~~~~~~~~~ functions.c:885:1: warning: return type defaults to 'int' [-Wimplicit-int] plot_calc( int num , int e_len, float *w_count, float *pl, ^~~~~~~~~ dialign.c: In function 'main': dialign.c:392:4: warning: implicit declaration of function 'regex_parse' [-Wimplicit-function-declaration] regex_parse( mot_regex ) ; ^~~~~~~~~~~ anchor.c: In function 'multi_anc_read': anchor.c:118:5: warning: implicit declaration of function 'erreur'; did you mean 'perror'? [-Wimplicit-function-declaration] erreur("\n\n cannot find file with anchor points \n\n\n"); ^~~~~~ perror anchor.c:131:10: warning: implicit declaration of function 'word_count' [-Wimplicit-function-declaration] if( word_count( line ) == 6 ) { ^~~~~~~~~~ dialign.c:487:5: warning: implicit declaration of function 'seq_parse' [-Wimplicit-function-declaration] seq_parse( mot_regex ) ; ^~~~~~~~~ dialign.c:619:3: warning: implicit declaration of function 'exclude_frg_read' [-Wimplicit-function-declaration] exclude_frg_read ( input_name , exclude_list ) ; ^~~~~~~~~~~~~~~~ gcc dialign.o functions.o para.o output.o wgt.o anchor.o regex.o input.o frag_chain.o alig_graph_closure.o pratique.o -lm -o dialign2-2 -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/build/dialign-2.2.1/src' make[1]: Leaving directory '/build/dialign-2.2.1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'dialign' in '../dialign_2.2.1-10_amd64.deb'. dpkg-deb: building package 'dialign-dbgsym' in '../dialign-dbgsym_2.2.1-10_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../dialign_2.2.1-10_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/5777 and its subdirectories I: Current time: Thu Dec 24 10:04:21 -12 2020 I: pbuilder-time-stamp: 1608847461 Thu Dec 24 22:04:22 UTC 2020 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Thu Dec 24 22:04:23 UTC 2020 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Thu Dec 24 22:04:46 UTC 2020 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Thu Dec 24 22:04:47 UTC 2020 I: dialign_2.2.1-10_amd64.changes: Format: 1.8 Date: Sun, 19 Aug 2018 12:26:16 +0200 Source: dialign Binary: dialign dialign-dbgsym Architecture: amd64 Version: 2.2.1-10 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: dialign - Segment-based multiple sequence alignment Changes: dialign (2.2.1-10) unstable; urgency=medium . [ Steffen Moeller ] * Added references to registries RRID (SCR_008417), OMICtools (OMIC_00973) and bio.tools (Dialign) . [ Andreas Tille ] * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.0 Checksums-Sha1: bb73db1c74bf882190367fc2c13552b40cc5744b 73004 dialign-dbgsym_2.2.1-10_amd64.deb eb076e6dc7c4cb292167f33f1246d755dcd3add3 4626 dialign_2.2.1-10_amd64.buildinfo 856160253d87c7a97b8516120e431aba7d2c86de 138748 dialign_2.2.1-10_amd64.deb Checksums-Sha256: db3b445c72e090a51b5bcf0b6783bd7520abbbe79c7ba246e76bad3729fdec39 73004 dialign-dbgsym_2.2.1-10_amd64.deb 01ebc50b402bb3820b4c3db9e787c1f4f14d5224adcb6bce6a8968e7c47642a8 4626 dialign_2.2.1-10_amd64.buildinfo b057193fbb4b1e8853e76df443837242137951bf0a324b1c7cb6e85d766a2f66 138748 dialign_2.2.1-10_amd64.deb Files: 16c78ac5cc63f6f18c629198e170a9e1 73004 debug optional dialign-dbgsym_2.2.1-10_amd64.deb 4b7088eb9df4f8001598c885a34f5b23 4626 science optional dialign_2.2.1-10_amd64.buildinfo 6794a6d6c4573065276e4af15a314c73 138748 science optional dialign_2.2.1-10_amd64.deb Thu Dec 24 22:04:56 UTC 2020 I: diffoscope 163 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.hjpXi3nO3J/dialign_2.2.1-10.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.hjpXi3nO3J/dialign_2.2.1-10.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.hjpXi3nO3J/dialign_2.2.1-10.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.hjpXi3nO3J/b1/dialign_2.2.1-10_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.hjpXi3nO3J/b2/dialign_2.2.1-10_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 9.400s) 9.400s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.653s) 0.653s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Thu Dec 24 22:54:48 UTC 2020 I: diffoscope 163 found no differences in the changes files, and a .buildinfo file also exists. Thu Dec 24 22:54:48 UTC 2020 I: dialign from buster built successfully and reproducibly on amd64. Thu Dec 24 22:54:57 UTC 2020 I: Submitting .buildinfo files to external archives: Thu Dec 24 22:54:57 UTC 2020 I: Submitting 8.0K b1/dialign_2.2.1-10_amd64.buildinfo.asc Thu Dec 24 22:54:58 UTC 2020 I: Submitting 8.0K b2/dialign_2.2.1-10_amd64.buildinfo.asc Thu Dec 24 22:54:59 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Dec 24 22:54:59 UTC 2020 I: Done submitting .buildinfo files. Thu Dec 24 22:54:59 UTC 2020 I: Removing signed dialign_2.2.1-10_amd64.buildinfo.asc files: removed './b1/dialign_2.2.1-10_amd64.buildinfo.asc' removed './b2/dialign_2.2.1-10_amd64.buildinfo.asc'