Sat Aug 7 15:32:48 UTC 2021 I: starting to build biojava-live/buster/amd64 on jenkins on '2021-08-07 15:32' Sat Aug 7 15:32:48 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_25/26292/console.log Sat Aug 7 15:32:48 UTC 2021 I: Downloading source for buster/biojava-live=1:1.7.1-8 --2021-08-07 15:32:48-- http://deb.debian.org/debian/pool/main/b/biojava-live/biojava-live_1.7.1-8.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2429 (2.4K) Saving to: ‘biojava-live_1.7.1-8.dsc’ 0K .. 100% 205M=0s 2021-08-07 15:32:48 (205 MB/s) - ‘biojava-live_1.7.1-8.dsc’ saved [2429/2429] Sat Aug 7 15:32:48 UTC 2021 I: biojava-live_1.7.1-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: biojava-live Binary: libbiojava1.7-java, libbiojava-java, libbiojava-java-demos, libbiojava-java-doc Architecture: all Version: 1:1.7.1-8 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille , Olivier Sallou Homepage: http://www.biojava.org Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/biojava-live Vcs-Git: https://salsa.debian.org/med-team/biojava-live.git Build-Depends: debhelper (>= 11~), ant Build-Depends-Indep: libcommons-dbcp-java, libhsqldb-java, libcommons-collections3-java, libcommons-pool-java, libbytecode-java, default-jdk, junit4, ant-optional Package-List: libbiojava-java deb java optional arch=all libbiojava-java-demos deb java optional arch=all libbiojava-java-doc deb doc optional arch=all libbiojava1.7-java deb java optional arch=all Checksums-Sha1: bfd57465c9481968dc8a6ef86ed03bce01f71800 11042771 biojava-live_1.7.1.orig.tar.gz 29438b1c92728435cdb207f2a95e38d88f837a60 9348 biojava-live_1.7.1-8.debian.tar.xz Checksums-Sha256: 60211e48176ffb4371465e3118f7ca8f5837175f3798fd843d56c449e17ba57b 11042771 biojava-live_1.7.1.orig.tar.gz 02e68a0030f0bec1b988e31ec87078879b1e4c31399b317a674bf74cd4f48ea1 9348 biojava-live_1.7.1-8.debian.tar.xz Files: ed69ed2aba1f1327c5c8386bf16c872c 11042771 biojava-live_1.7.1.orig.tar.gz c025f4cfb1c3941b911bb3a8061f7fae 9348 biojava-live_1.7.1-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJHBAEBCAAxFiEEX7Rvg9O5UgRjNdJteNxo2zJthDgFAlvpngITHG9zYWxsb3VA ZGViaWFuLm9yZwAKCRB43GjbMm2EOA+REACcIMtgJ0hAEVKvCF5w6osQVzCNTJKN 0wd3D3+gi8rD+u91SgE3rtBsSETs6785FF0cRnooHxGgrlKIgdAvp8KJg/0K1QFY V8iTgPjMdQuxvLts4rk4F493T/kF7qvmdOMdh09VUaWkzcwbkGep99AgHl8yRyF5 JAZIZObYAv4wfPoFmx5xSPoD1e7Pmihi/MvPvZpYro9F+31RKh0cTnQKsZJGBOAN ROcQnjHzG47aYpEnUWifZYX90Tlxtb2YfmvQcXcc8vP+Xpi41o+0+TTsdetcKp88 9hnNoD4AEbyaWxpxRDDFMjHWo9K8cEBvnCCAVqC8xtCl6mk5Ty+IGqpxOulwmZAY fnuMEbmXaz1Pp2BNntXeui1J4h6FygZ3Vjye2v8iqFzRaCX+Jbsj8Qhe+rQ2hBDf ME91oW33S/+8/7yjWEwW7AMhDQhb4n3vRiW9sxzcvQEZvvcUKLlkadRCDdpvoBgm 5pay+L4Wl20FZ8PNlYFhQQcsaKjL2oMujTML/kFjD3wkLIyVbfr4B5VfgxcdqpRT JKuRFtwF7qzFwh9KplMfSNg1rLSuSpPbsdqVbq2dyn5u0m1UnqsSXSGc0EYeL1Ai QXrdhlm1Q009E804NXuhgXYQvPxgZ+qzUgMPHMdfOnooDFpe7O3FpKt8vCePpl6c m+L7VojQjJBMog== =khOj -----END PGP SIGNATURE----- Sat Aug 7 15:32:48 UTC 2021 I: Checking whether the package is not for us Sat Aug 7 15:32:48 UTC 2021 I: Starting 1st build on remote node ionos1-amd64.debian.net. Sat Aug 7 15:32:48 UTC 2021 I: Preparing to do remote build '1' on ionos1-amd64.debian.net. Sat Aug 7 15:35:10 UTC 2021 I: Deleting $TMPDIR on ionos1-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Aug 7 03:32:50 -12 2021 I: pbuilder-time-stamp: 1628350370 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [biojava-live_1.7.1-8.dsc] I: copying [./biojava-live_1.7.1.orig.tar.gz] I: copying [./biojava-live_1.7.1-8.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Nov 12 03:36:34 2018 -12 gpgv: using RSA key 5FB46F83D3B952046335D26D78DC68DB326D8438 gpgv: issuer "osallou@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./biojava-live_1.7.1-8.dsc dpkg-source: info: extracting biojava-live in biojava-live-1.7.1 dpkg-source: info: unpacking biojava-live_1.7.1.orig.tar.gz dpkg-source: info: unpacking biojava-live_1.7.1-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying buildxml.patch dpkg-source: info: applying reproducible.patch dpkg-source: info: applying java8_instead_of_11.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/23796/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='7ce88f0380e541c1bf72ffe948e6315d' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='23796' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ZuAopwKDwc/pbuilderrc_v1nM --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ZuAopwKDwc/b1 --logfile b1/build.log biojava-live_1.7.1-8.dsc' SUDO_GID='110' SUDO_UID='105' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos1-amd64 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 6 20:25 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/23796/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), ant, libcommons-dbcp-java, libhsqldb-java, libcommons-collections3-java, libcommons-pool-java, libbytecode-java, default-jdk, junit4, ant-optional dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on ant; however: Package ant is not installed. pbuilder-satisfydepends-dummy depends on libcommons-dbcp-java; however: Package libcommons-dbcp-java is not installed. pbuilder-satisfydepends-dummy depends on libhsqldb-java; however: Package libhsqldb-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-collections3-java; however: Package libcommons-collections3-java is not installed. pbuilder-satisfydepends-dummy depends on libcommons-pool-java; however: Package libcommons-pool-java is not installed. pbuilder-satisfydepends-dummy depends on libbytecode-java; however: Package libbytecode-java is not installed. pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. pbuilder-satisfydepends-dummy depends on junit4; however: Package junit4 is not installed. pbuilder-satisfydepends-dummy depends on ant-optional; however: Package ant-optional is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: ant{a} ant-optional{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} ca-certificates{a} ca-certificates-java{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} java-common{a} junit4{a} libarchive-zip-perl{a} libasound2{a} libasound2-data{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbsd0{a} libbytecode-java{a} libcommons-collections3-java{a} libcommons-dbcp-java{a} libcommons-pool-java{a} libcroco3{a} libcups2{a} libdbus-1-3{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libel-api-java{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgssapi-krb5-2{a} libhamcrest-java{a} libharfbuzz0b{a} libhsqldb-java{a} libicu63{a} libjpeg62-turbo{a} libjsp-api-java{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblcms2-2{a} libllvm7{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnspr4{a} libnss3{a} libpciaccess0{a} libpcsclite1{a} libpipeline1{a} libpng16-16{a} libsensors-config{a} libsensors5{a} libservlet-api-java{a} libservlet3.1-java{a} libsigsegv2{a} libssl1.1{a} libtool{a} libuchardet0{a} libwebsocket-api-java{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-sync1{a} libxcb1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxml2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} lsb-base{a} m4{a} man-db{a} openjdk-11-jdk{a} openjdk-11-jdk-headless{a} openjdk-11-jre{a} openjdk-11-jre-headless{a} openssl{a} po-debconf{a} sensible-utils{a} ucf{a} x11-common{a} The following packages are RECOMMENDED but will NOT be installed: curl dbus fonts-dejavu-extra krb5-locales libarchive-cpio-perl libatk-wrapper-java-jni libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl libxt-dev lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 125 newly installed, 0 to remove and 0 not upgraded. Need to get 318 MB of archives. After unpacking 726 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u6 [1539 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 openssl amd64 1.1.1d-0+deb10u6 [844 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 ca-certificates all 20200601~deb10u2 [166 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 libnspr4 amd64 2:4.20-1 [112 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 libnss3 amd64 2:3.42.1-1+deb10u3 [1159 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 ca-certificates-java all 20190405 [15.7 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 java-common all 0.71 [14.4 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 libavahi-common-data amd64 0.7-4+deb10u1 [122 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 libavahi-common3 amd64 0.7-4+deb10u1 [54.4 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 libdbus-1-3 amd64 1.12.20-0+deb10u1 [215 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 libavahi-client3 amd64 0.7-4+deb10u1 [58.2 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u1 [65.8 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u1 [122 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u1 [369 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u1 [158 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libcups2 amd64 2.2.10-6+deb10u4 [324 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 liblcms2-2 amd64 2.9-3 [145 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u2 [380 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 libasound2-data all 1.1.8-1 [59.6 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 libasound2 amd64 1.1.8-1 [361 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 libpcsclite1 amd64 1.8.24-1 [58.5 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 openjdk-11-jre-headless amd64 11.0.11+9-1~deb10u1 [37.2 MB] Get: 45 http://deb.debian.org/debian buster/main amd64 default-jre-headless amd64 2:1.11-71 [10.9 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 ant all 1.10.5-2 [2082 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 ant-optional all 1.10.5-2 [379 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 libglvnd0 amd64 1.1.0-1 [48.6 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 libdrm-common all 2.4.97-1 [13.8 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 libdrm2 amd64 2.4.97-1 [39.7 kB] Get: 78 http://deb.debian.org/debian buster/main amd64 libglapi-mesa amd64 18.3.6-2+deb10u1 [66.3 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 libx11-xcb1 amd64 2:1.6.7-1+deb10u2 [191 kB] Get: 80 http://deb.debian.org/debian buster/main amd64 libxcb-dri2-0 amd64 1.13.1-2 [101 kB] Get: 81 http://deb.debian.org/debian buster/main amd64 libxcb-dri3-0 amd64 1.13.1-2 [100 kB] Get: 82 http://deb.debian.org/debian buster/main amd64 libxcb-glx0 amd64 1.13.1-2 [116 kB] Get: 83 http://deb.debian.org/debian buster/main amd64 libxcb-present0 amd64 1.13.1-2 [99.1 kB] Get: 84 http://deb.debian.org/debian buster/main amd64 libxcb-sync1 amd64 1.13.1-2 [103 kB] Get: 85 http://deb.debian.org/debian buster/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get: 86 http://deb.debian.org/debian buster/main amd64 libxdamage1 amd64 1:1.1.4-3+b3 [14.9 kB] Get: 87 http://deb.debian.org/debian buster/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get: 88 http://deb.debian.org/debian buster/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get: 89 http://deb.debian.org/debian buster/main amd64 libdrm-amdgpu1 amd64 2.4.97-1 [27.3 kB] Get: 90 http://deb.debian.org/debian buster/main amd64 libpciaccess0 amd64 0.14-1 [53.5 kB] Get: 91 http://deb.debian.org/debian buster/main amd64 libdrm-intel1 amd64 2.4.97-1 [69.8 kB] Get: 92 http://deb.debian.org/debian buster/main amd64 libdrm-nouveau2 amd64 2.4.97-1 [26.3 kB] Get: 93 http://deb.debian.org/debian buster/main amd64 libdrm-radeon1 amd64 2.4.97-1 [31.1 kB] Get: 94 http://deb.debian.org/debian buster/main amd64 libedit2 amd64 3.1-20181209-1 [94.0 kB] Get: 95 http://deb.debian.org/debian buster/main amd64 libllvm7 amd64 1:7.0.1-8+deb10u2 [13.1 MB] Get: 96 http://deb.debian.org/debian buster/main amd64 libsensors-config all 1:3.5.0-3 [31.6 kB] Get: 97 http://deb.debian.org/debian buster/main amd64 libsensors5 amd64 1:3.5.0-3 [52.6 kB] Get: 98 http://deb.debian.org/debian buster/main amd64 libgl1-mesa-dri amd64 18.3.6-2+deb10u1 [6685 kB] Get: 99 http://deb.debian.org/debian buster/main amd64 libglx-mesa0 amd64 18.3.6-2+deb10u1 [180 kB] Get: 100 http://deb.debian.org/debian buster/main amd64 libglx0 amd64 1.1.0-1 [30.0 kB] Get: 101 http://deb.debian.org/debian buster/main amd64 libgl1 amd64 1.1.0-1 [91.1 kB] Get: 102 http://deb.debian.org/debian buster/main amd64 libgif7 amd64 5.1.4-3 [43.3 kB] Get: 103 http://deb.debian.org/debian buster/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get: 104 http://deb.debian.org/debian buster/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get: 105 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get: 106 http://deb.debian.org/debian buster/main amd64 x11-common all 1:7.7+19 [251 kB] Get: 107 http://deb.debian.org/debian buster/main amd64 libxtst6 amd64 2:1.2.3-1 [27.8 kB] Get: 108 http://deb.debian.org/debian buster/main amd64 openjdk-11-jre amd64 11.0.11+9-1~deb10u1 [174 kB] Get: 109 http://deb.debian.org/debian buster/main amd64 default-jre amd64 2:1.11-71 [1044 B] Get: 110 http://deb.debian.org/debian buster/main amd64 openjdk-11-jdk-headless amd64 11.0.11+9-1~deb10u1 [220 MB] Get: 111 http://deb.debian.org/debian buster/main amd64 default-jdk-headless amd64 2:1.11-71 [1104 B] Get: 112 http://deb.debian.org/debian buster/main amd64 openjdk-11-jdk amd64 11.0.11+9-1~deb10u1 [2665 kB] Get: 113 http://deb.debian.org/debian buster/main amd64 default-jdk amd64 2:1.11-71 [1056 B] Get: 114 http://deb.debian.org/debian buster/main amd64 libhamcrest-java all 1.3-9 [388 kB] Get: 115 http://deb.debian.org/debian buster/main amd64 junit4 all 4.12-8 [292 kB] Get: 116 http://deb.debian.org/debian buster/main amd64 libbytecode-java all 0.92.svn.20090106-2 [89.1 kB] Get: 117 http://deb.debian.org/debian buster/main amd64 libcommons-collections3-java all 3.2.2-2 [526 kB] Get: 118 http://deb.debian.org/debian buster/main amd64 libcommons-pool-java all 1.6-3 [104 kB] Get: 119 http://deb.debian.org/debian buster/main amd64 libcommons-dbcp-java all 1.4-6 [157 kB] Get: 120 http://deb.debian.org/debian buster/main amd64 libel-api-java all 3.0.0-2+deb10u1 [64.9 kB] Get: 121 http://deb.debian.org/debian buster/main amd64 libservlet-api-java all 4.0.1-2 [81.0 kB] Get: 122 http://deb.debian.org/debian buster/main amd64 libjsp-api-java all 2.3.4-2+deb10u1 [53.7 kB] Get: 123 http://deb.debian.org/debian buster/main amd64 libwebsocket-api-java all 1.1-1+deb10u1 [40.0 kB] Get: 124 http://deb.debian.org/debian buster/main amd64 libservlet3.1-java all 1:4.0.1-2 [9516 B] Get: 125 http://deb.debian.org/debian buster/main amd64 libhsqldb-java all 2.4.1-2 [1633 kB] Fetched 318 MB in 4s (76.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3+deb10u1_amd64.deb ... Unpacking groff-base (1.22.4-3+deb10u1) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../006-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../007-libmagic-mgc_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../008-libmagic1_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4+deb10u2) ... Selecting previously unselected package file. Preparing to unpack .../009-file_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking file (1:5.35-4+deb10u2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../010-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package ucf. Preparing to unpack .../011-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../012-libssl1.1_1.1.1d-0+deb10u6_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1d-0+deb10u6) ... Selecting previously unselected package openssl. Preparing to unpack .../013-openssl_1.1.1d-0+deb10u6_amd64.deb ... Unpacking openssl (1.1.1d-0+deb10u6) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../014-ca-certificates_20200601~deb10u2_all.deb ... Unpacking ca-certificates (20200601~deb10u2) ... Selecting previously unselected package libnspr4:amd64. Preparing to unpack .../015-libnspr4_2%3a4.20-1_amd64.deb ... Unpacking libnspr4:amd64 (2:4.20-1) ... Selecting previously unselected package libnss3:amd64. Preparing to unpack .../016-libnss3_2%3a3.42.1-1+deb10u3_amd64.deb ... Unpacking libnss3:amd64 (2:3.42.1-1+deb10u3) ... Selecting previously unselected package ca-certificates-java. Preparing to unpack .../017-ca-certificates-java_20190405_all.deb ... Unpacking ca-certificates-java (20190405) ... Selecting previously unselected package java-common. Preparing to unpack .../018-java-common_0.71_all.deb ... Unpacking java-common (0.71) ... Selecting previously unselected package libavahi-common-data:amd64. Preparing to unpack .../019-libavahi-common-data_0.7-4+deb10u1_amd64.deb ... Unpacking libavahi-common-data:amd64 (0.7-4+deb10u1) ... Selecting previously unselected package libavahi-common3:amd64. Preparing to unpack .../020-libavahi-common3_0.7-4+deb10u1_amd64.deb ... Unpacking libavahi-common3:amd64 (0.7-4+deb10u1) ... Selecting previously unselected package libdbus-1-3:amd64. Preparing to unpack .../021-libdbus-1-3_1.12.20-0+deb10u1_amd64.deb ... Unpacking libdbus-1-3:amd64 (1.12.20-0+deb10u1) ... Selecting previously unselected package libavahi-client3:amd64. Preparing to unpack .../022-libavahi-client3_0.7-4+deb10u1_amd64.deb ... Unpacking libavahi-client3:amd64 (0.7-4+deb10u1) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../023-libkeyutils1_1.6-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6-6) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../024-libkrb5support0_1.17-3+deb10u1_amd64.deb ... Unpacking libkrb5support0:amd64 (1.17-3+deb10u1) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../025-libk5crypto3_1.17-3+deb10u1_amd64.deb ... Unpacking libk5crypto3:amd64 (1.17-3+deb10u1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../026-libkrb5-3_1.17-3+deb10u1_amd64.deb ... Unpacking libkrb5-3:amd64 (1.17-3+deb10u1) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../027-libgssapi-krb5-2_1.17-3+deb10u1_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.17-3+deb10u1) ... Selecting previously unselected package libcups2:amd64. Preparing to unpack .../028-libcups2_2.2.10-6+deb10u4_amd64.deb ... Unpacking libcups2:amd64 (2.2.10-6+deb10u4) ... Selecting previously unselected package liblcms2-2:amd64. Preparing to unpack .../029-liblcms2-2_2.9-3_amd64.deb ... Unpacking liblcms2-2:amd64 (2.9-3) ... Selecting previously unselected package libjpeg62-turbo:amd64. Preparing to unpack .../030-libjpeg62-turbo_1%3a1.5.2-2+deb10u1_amd64.deb ... Unpacking libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../031-libexpat1_2.2.6-2+deb10u1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.6-2+deb10u1) ... Selecting previously unselected package libpng16-16:amd64. Preparing to unpack .../032-libpng16-16_1.6.36-6_amd64.deb ... Unpacking libpng16-16:amd64 (1.6.36-6) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../033-libfreetype6_2.9.1-3+deb10u2_amd64.deb ... Unpacking libfreetype6:amd64 (2.9.1-3+deb10u2) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../034-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../035-fontconfig-config_2.13.1-2_all.deb ... Unpacking fontconfig-config (2.13.1-2) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../036-libfontconfig1_2.13.1-2_amd64.deb ... Unpacking libfontconfig1:amd64 (2.13.1-2) ... Selecting previously unselected package libasound2-data. Preparing to unpack .../037-libasound2-data_1.1.8-1_all.deb ... Unpacking libasound2-data (1.1.8-1) ... Selecting previously unselected package libasound2:amd64. Preparing to unpack .../038-libasound2_1.1.8-1_amd64.deb ... Unpacking libasound2:amd64 (1.1.8-1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../039-libglib2.0-0_2.58.3-2+deb10u3_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... Selecting previously unselected package libgraphite2-3:amd64. Preparing to unpack .../040-libgraphite2-3_1.3.13-7_amd64.deb ... Unpacking libgraphite2-3:amd64 (1.3.13-7) ... Selecting previously unselected package libharfbuzz0b:amd64. Preparing to unpack .../041-libharfbuzz0b_2.3.1-1_amd64.deb ... Unpacking libharfbuzz0b:amd64 (2.3.1-1) ... Selecting previously unselected package libpcsclite1:amd64. Preparing to unpack .../042-libpcsclite1_1.8.24-1_amd64.deb ... Unpacking libpcsclite1:amd64 (1.8.24-1) ... Selecting previously unselected package openjdk-11-jre-headless:amd64. Preparing to unpack .../043-openjdk-11-jre-headless_11.0.11+9-1~deb10u1_amd64.deb ... Unpacking openjdk-11-jre-headless:amd64 (11.0.11+9-1~deb10u1) ... Selecting previously unselected package default-jre-headless. Preparing to unpack .../044-default-jre-headless_2%3a1.11-71_amd64.deb ... Unpacking default-jre-headless (2:1.11-71) ... Selecting previously unselected package ant. Preparing to unpack .../045-ant_1.10.5-2_all.deb ... Unpacking ant (1.10.5-2) ... Selecting previously unselected package ant-optional. Preparing to unpack .../046-ant-optional_1.10.5-2_all.deb ... Unpacking ant-optional (1.10.5-2) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../047-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../048-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../049-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../050-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../051-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../052-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../053-libtool_2.4.6-9_all.deb ... Unpacking libtool (2.4.6-9) ... Selecting previously unselected package dh-autoreconf. 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Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libsensors-config (1:3.5.0-3) ... Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libel-api-java (3.0.0-2+deb10u1) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up libkrb5support0:amd64 (1.17-3+deb10u1) ... Setting up libcommons-collections3-java (3.2.2-2) ... Setting up libasound2-data (1.1.8-1) ... Setting up autotools-dev (20180224.1) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Setting up libx11-data (2:1.6.7-1+deb10u2) ... Setting up libnspr4:amd64 (2:4.20-1) ... Setting up libavahi-common-data:amd64 (0.7-4+deb10u1) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libdbus-1-3:amd64 (1.12.20-0+deb10u1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libwebsocket-api-java (1.1-1+deb10u1) ... Setting up libpng16-16:amd64 (1.6.36-6) ... Setting up libcommons-pool-java (1.6-3) ... Setting up autopoint (0.19.8.1-9) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libpcsclite1:amd64 (1.8.24-1) ... Setting up libsensors5:amd64 (1:3.5.0-3) ... Setting up libk5crypto3:amd64 (1.17-3+deb10u1) ... Setting up libhamcrest-java (1.3-9) ... Setting up libglapi-mesa:amd64 (18.3.6-2+deb10u1) ... Setting up libjsp-api-java (2.3.4-2+deb10u1) ... Setting up libgif7:amd64 (5.1.4-3) ... Setting up sensible-utils (0.0.12) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libasound2:amd64 (1.1.8-1) ... Setting up libservlet-api-java (4.0.1-2) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u1) ... Setting up openssl (1.1.1d-0+deb10u6) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libdrm-common (2.4.97-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Setting up libservlet3.1-java (1:4.0.1-2) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libcommons-dbcp-java (1.4-6) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libtool (2.4.6-9) ... Setting up libhsqldb-java (2.4.1-2) ... Setting up libxcb-glx0:amd64 (1.13.1-2) ... Setting up libedit2:amd64 (3.1-20181209-1) ... Setting up libavahi-common3:amd64 (0.7-4+deb10u1) ... Setting up m4 (1.4.18-2) ... Setting up libnss3:amd64 (2:3.42.1-1+deb10u3) ... Setting up libxcb-present0:amd64 (1.13.1-2) ... Setting up ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 137 added, 0 removed; done. Setting up libfreetype6:amd64 (2.9.1-3+deb10u2) ... Setting up libxcb-sync1:amd64 (1.13.1-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u1) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up libxcb-dri2-0:amd64 (1.13.1-2) ... Setting up libdrm2:amd64 (2.4.97-1) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up libllvm7:amd64 (1:7.0.1-8+deb10u2) ... Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up libavahi-client3:amd64 (0.7-4+deb10u1) ... Setting up libdrm-amdgpu1:amd64 (2.4.97-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:amd64 (1.13.1-2) ... Setting up libdrm-nouveau2:amd64 (2.4.97-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up libdrm-radeon1:amd64 (2.4.97-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libdrm-intel1:amd64 (2.4.97-1) ... Setting up libgl1-mesa-dri:amd64 (18.3.6-2+deb10u1) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up libcups2:amd64 (2.2.10-6+deb10u4) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up libxdamage1:amd64 (1:1.1.4-3+b3) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up libxtst6:amd64 (2:1.2.3-1) ... Setting up po-debconf (1.0.21) ... Setting up libglx-mesa0:amd64 (18.3.6-2+deb10u1) ... Setting up libglx0:amd64 (1.1.0-1) ... Setting up libgl1:amd64 (1.1.0-1) ... Setting up default-jre-headless (2:1.11-71) ... Setting up openjdk-11-jre-headless:amd64 (11.0.11+9-1~deb10u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up openjdk-11-jre:amd64 (11.0.11+9-1~deb10u1) ... Setting up openjdk-11-jdk-headless:amd64 (11.0.11+9-1~deb10u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jaotc to provide /usr/bin/jaotc (jaotc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre (2:1.11-71) ... Setting up dh-autoreconf (19) ... Setting up default-jdk-headless (2:1.11-71) ... Setting up ant (1.10.5-2) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up openjdk-11-jdk:amd64 (11.0.11+9-1~deb10u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-amd64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up ca-certificates-java (20190405) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:thawte_Primary_Root_CA_-_G3.pem Adding debian:thawte_Primary_Root_CA_-_G2.pem Adding debian:thawte_Primary_Root_CA.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Taiwan_GRCA.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:LuxTrust_Global_Root_2.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GeoTrust_Universal_CA_2.pem Adding debian:GeoTrust_Universal_CA.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GeoTrust_Primary_Certification_Authority.pem Adding debian:GeoTrust_Global_CA.pem Adding debian:GTS_Root_R4.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R1.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EE_Certification_Centre_Root_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DST_Root_CA_X3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Setting up libbytecode-java (0.92.svn.20090106-2) ... Setting up junit4 (4.12-8) ... Setting up debhelper (12.1.1) ... Setting up default-jdk (2:1.11-71) ... Setting up ant-optional (1.10.5-2) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for ca-certificates (20200601~deb10u2) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/biojava-live-1.7.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package biojava-live dpkg-buildpackage: info: source version 1:1.7.1-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_auto_clean ant clean Buildfile: /build/biojava-live-1.7.1/build.xml init: [echo] Building biojava-1.7.1 [echo] Java Home: /usr/lib/jvm/java-11-openjdk-amd64 [echo] JUnit present: true [echo] JUnit supported by Ant: true [echo] HSQLDB driver present: true [echo] XSLT support: true clean: BUILD SUCCESSFUL Total time: 0 seconds debian/rules override_dh_clean make[1]: Entering directory '/build/biojava-live-1.7.1' ant clean # most probably this is not needed when using dh - leave it to be sure ... Buildfile: /build/biojava-live-1.7.1/build.xml init: [echo] Building biojava-1.7.1 [echo] Java Home: /usr/lib/jvm/java-11-openjdk-amd64 [echo] JUnit present: true [echo] JUnit supported by Ant: true [echo] HSQLDB driver present: true [echo] XSLT support: true clean: BUILD SUCCESSFUL Total time: 0 seconds dh_clean make[1]: Leaving directory '/build/biojava-live-1.7.1' debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/biojava-live-1.7.1' find . -name "*.java" -o -name ReadMe -o -name "*.fa" -o -name "*.html" | xargs -r chmod 644 # circumvent Debian's difficulties with libjgrapht - deleting all usage of that library rm -rf src/org/biojavax/bio/phylo/io/nexus/ \ src/org/biojavax/bio/phylo/DistanceBasedTreeMethod.java \ src/org/biojavax/bio/phylo/ParsimonyTreeMethod.java dh_auto_build ant -Duser.name debian Buildfile: /build/biojava-live-1.7.1/build.xml init: [echo] Building biojava-1.7.1 [echo] Java Home: /usr/lib/jvm/java-11-openjdk-amd64 [echo] JUnit present: true [echo] JUnit supported by Ant: true [echo] HSQLDB driver present: true [echo] XSLT support: true prepare: [mkdir] Created dir: /build/biojava-live-1.7.1/ant-build prepare-biojava: [mkdir] Created dir: /build/biojava-live-1.7.1/ant-build/classes/biojava [mkdir] Created dir: /build/biojava-live-1.7.1/ant-build/docs/biojava [mkdir] Created dir: /build/biojava-live-1.7.1/ant-build/docs/check/biojava compile-biojava: [javac] /build/biojava-live-1.7.1/build.xml:247: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds [javac] Compiling 1444 source files to /build/biojava-live-1.7.1/ant-build/classes/biojava [javac] Support for javac --release has been added in Java9 ignoring it [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] /build/biojava-live-1.7.1/src/org/biojava/bio/proteomics/StructureTools.java:37: warning: as of release 9, '_' is a keyword, and may not be used as an identifier [javac] private static final AtomicSymbol _; [javac] ^ [javac] /build/biojava-live-1.7.1/src/org/biojava/bio/proteomics/StructureTools.java:53: warning: as of release 9, '_' is a keyword, and may not be used as an identifier [javac] _ = (AtomicSymbol) sTok.parseToken(" "); [javac] ^ [javac] /build/biojava-live-1.7.1/src/org/biojava/bio/proteomics/StructureTools.java:72: warning: as of release 9, '_' is a keyword, and may not be used as an identifier [javac] return _; [javac] ^ [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 4 warnings [javac] Creating empty /build/biojava-live-1.7.1/ant-build/classes/biojava/org/biojava/bio/program/fastq/package-info.class package-biojava: [jar] Building jar: /build/biojava-live-1.7.1/ant-build/biojava.jar BUILD SUCCESSFUL Total time: 14 seconds # Add here commands to compile the package. ANT_OPTS="-Xms1024m -Xmx1024m" ant package-biojava Buildfile: /build/biojava-live-1.7.1/build.xml init: [echo] Building biojava-1.7.1 [echo] Java Home: /usr/lib/jvm/java-11-openjdk-amd64 [echo] JUnit present: true [echo] JUnit supported by Ant: true [echo] HSQLDB driver present: true [echo] XSLT support: true prepare: prepare-biojava: compile-biojava: [javac] /build/biojava-live-1.7.1/build.xml:247: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds package-biojava: BUILD SUCCESSFUL Total time: 1 second #ant compile-demos ant javadocs-biojava Buildfile: /build/biojava-live-1.7.1/build.xml init: [echo] Building biojava-1.7.1 [echo] Java Home: /usr/lib/jvm/java-11-openjdk-amd64 [echo] JUnit present: true [echo] JUnit supported by Ant: true [echo] HSQLDB driver present: true [echo] XSLT support: true prepare: prepare-biojava: javadocs-biojava: [javadoc] Generating Javadoc [javadoc] Using javadoc -source 1.5 is no longer supported, switching to 6 [javadoc] Debian build on Java 9+ detected: Adding the --ignore-source-errors option [javadoc] Javadoc execution [javadoc] Loading source files for package org.biojava.bibliography... [javadoc] Loading source files for package org.biojava.bio... [javadoc] Loading source files for package org.biojava.bio.alignment... [javadoc] Loading source files for package org.biojava.bio.annodb... [javadoc] Loading source files for package org.biojava.bio.chromatogram... [javadoc] Loading source files for package org.biojava.bio.chromatogram.graphic... [javadoc] Loading source files for package org.biojava.bio.dist... [javadoc] Loading source files for package org.biojava.bio.dp... [javadoc] Loading source files for package org.biojava.bio.dp.onehead... [javadoc] Loading source files for package org.biojava.bio.dp.twohead... [javadoc] Loading source files for package org.biojava.bio.gui... [javadoc] Loading source files for package org.biojava.bio.gui.glyph... [javadoc] Loading source files for package org.biojava.bio.gui.sequence... [javadoc] Loading source files for package org.biojava.bio.gui.sequence.tracklayout... [javadoc] Loading source files for package org.biojava.bio.molbio... [javadoc] Loading source files for package org.biojava.bio.program... [javadoc] Loading source files for package org.biojava.bio.program.abi... [javadoc] Loading source files for package org.biojava.bio.program.blast2html... [javadoc] Loading source files for package org.biojava.bio.program.das... [javadoc] Loading source files for package org.biojava.bio.program.das.dasalignment... [javadoc] Loading source files for package org.biojava.bio.program.das.dasstructure... [javadoc] Loading source files for package org.biojava.bio.program.fastq... [javadoc] Loading source files for package org.biojava.bio.program.formats... [javadoc] Loading source files for package org.biojava.bio.program.gff... [javadoc] Loading source files for package org.biojava.bio.program.gff3... [javadoc] Loading source files for package org.biojava.bio.program.hmmer... [javadoc] Loading source files for package org.biojava.bio.program.homologene... [javadoc] Loading source files for package org.biojava.bio.program.indexdb... [javadoc] Loading source files for package org.biojava.bio.program.phred... [javadoc] Loading source files for package org.biojava.bio.program.sax... [javadoc] Loading source files for package org.biojava.bio.program.sax.blastxml... [javadoc] Loading source files for package org.biojava.bio.program.scf... [javadoc] Loading source files for package org.biojava.bio.program.ssaha... [javadoc] Loading source files for package org.biojava.bio.program.ssbind... [javadoc] Loading source files for package org.biojava.bio.program.tagvalue... [javadoc] Loading source files for package org.biojava.bio.program.unigene... [javadoc] Loading source files for package org.biojava.bio.program.xff... [javadoc] Loading source files for package org.biojava.bio.program.xml... [javadoc] Loading source files for package org.biojava.bio.proteomics... [javadoc] Loading source files for package org.biojava.bio.proteomics.aaindex... [javadoc] Loading source files for package org.biojava.bio.search... [javadoc] Loading source files for package org.biojava.bio.seq... [javadoc] Loading source files for package org.biojava.bio.seq.db... [javadoc] Loading source files for package org.biojava.bio.seq.db.biofetch... [javadoc] Loading source files for package org.biojava.bio.seq.db.biosql... [javadoc] Loading source files for package org.biojava.bio.seq.db.emblcd... [javadoc] Loading source files for package org.biojava.bio.seq.db.flat... [javadoc] Loading source files for package org.biojava.bio.seq.distributed... [javadoc] Loading source files for package org.biojava.bio.seq.filter... [javadoc] Loading source files for package org.biojava.bio.seq.homol... [javadoc] Loading source files for package org.biojava.bio.seq.impl... [javadoc] Loading source files for package org.biojava.bio.seq.io... 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[javadoc] /build/biojava-live-1.7.1/src/org/biojava/bio/proteomics/StructureTools.java:37: warning: as of release 9, '_' is a keyword, and may not be used as an identifier [javadoc] private static final AtomicSymbol _; [javadoc] ^ [javadoc] /build/biojava-live-1.7.1/src/org/biojava/bio/proteomics/StructureTools.java:53: warning: as of release 9, '_' is a keyword, and may not be used as an identifier [javadoc] _ = (AtomicSymbol) sTok.parseToken(" "); [javadoc] ^ [javadoc] /build/biojava-live-1.7.1/src/org/biojava/bio/proteomics/StructureTools.java:72: warning: as of release 9, '_' is a keyword, and may not be used as an identifier [javadoc] return _; [javadoc] ^ [javadoc] Constructing Javadoc information... [javadoc] javadoc: error - Error fetching URL: http://java.sun.com/j2se/1.5.0/docs/api/ [javadoc] Standard Doclet version 11.0.11 [javadoc] Building tree for all the packages and classes... [javadoc] /build/biojava-live-1.7.1/src/org/biojava/bibliography/BiblioScope.java:49: warning - invalid usage of tag > [javadoc] /build/biojava-live-1.7.1/src/org/biojava/bibliography/BibRefQuery.java:625: warning - invalid usage of tag & [javadoc] /build/biojava-live-1.7.1/src/org/biojava/bio/AnnotationType.java:578: warning - invalid usage of tag > [javadoc] /build/biojava-live-1.7.1/src/org/biojava/utils/AbstractChangeable.java:74: warning - invalid usage of tag & [javadoc] /build/biojava-live-1.7.1/src/org/biojava/utils/AbstractChangeable.java:74: warning - invalid usage of tag & [javadoc] /build/biojava-live-1.7.1/src/org/biojava/utils/AbstractChangeable.java:84: warning - invalid usage of tag & [javadoc] /build/biojava-live-1.7.1/src/org/biojava/utils/AbstractChangeable.java:74: warning - invalid usage of tag & [javadoc] /build/biojava-live-1.7.1/src/org/biojava/utils/AbstractChangeable.java:74: warning - invalid usage of tag & [javadoc] /build/biojava-live-1.7.1/src/org/biojava/utils/AbstractChangeable.java:84: warning - 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invalid usage of tag & [javadoc] /build/biojava-live-1.7.1/src/org/biojava/utils/AbstractChangeable.java:74: warning - invalid usage of tag & [javadoc] /build/biojava-live-1.7.1/src/org/biojava/utils/AbstractChangeable.java:74: warning - invalid usage of tag & [javadoc] /build/biojava-live-1.7.1/src/org/biojava/utils/AbstractChangeable.java:84: warning - invalid usage of tag & [javadoc] /build/biojava-live-1.7.1/src/org/biojava/utils/AbstractChangeable.java:74: warning - invalid usage of tag & [javadoc] /build/biojava-live-1.7.1/src/org/biojava/utils/AbstractChangeable.java:74: warning - invalid usage of tag & [javadoc] /build/biojava-live-1.7.1/src/org/biojava/utils/AbstractChangeable.java:84: warning - invalid usage of tag & [javadoc] /build/biojava-live-1.7.1/src/org/biojava/utils/AbstractChangeable.java:74: warning - invalid usage of tag & [javadoc] /build/biojava-live-1.7.1/src/org/biojava/utils/AbstractChangeable.java:74: warning - invalid usage of tag & [javadoc] /build/biojava-live-1.7.1/src/org/biojava/utils/AbstractChangeable.java:84: warning - invalid usage of tag & [javadoc] /build/biojava-live-1.7.1/src/org/biojava/bio/gui/sequence/SequencePanel.java:398: warning - invalid usage of tag > [javadoc] /build/biojava-live-1.7.1/src/org/biojava/bio/gui/sequence/SequencePoster.java:406: warning - invalid usage of tag > [javadoc] /build/biojava-live-1.7.1/src/org/biojava/utils/AbstractChangeable.java:74: warning - invalid usage of tag & [javadoc] /build/biojava-live-1.7.1/src/org/biojava/utils/AbstractChangeable.java:74: warning - invalid usage of tag & [javadoc] /build/biojava-live-1.7.1/src/org/biojava/utils/AbstractChangeable.java:84: warning - invalid usage of tag & [javadoc] /build/biojava-live-1.7.1/src/org/biojava/bio/molbio/RestrictionEnzymeManager.java:229: warning - invalid usage of tag < [javadoc] /build/biojava-live-1.7.1/src/org/biojava/bio/molbio/RestrictionEnzymeManager.java:229: warning - invalid usage of tag > [javadoc] /build/biojava-live-1.7.1/src/org/biojava/bio/program/BlastLikeToXMLConverter.java:61: warning - invalid usage of tag < [javadoc] /build/biojava-live-1.7.1/src/org/biojava/bio/program/BlastLikeToXMLConverter.java:61: warning - invalid usage of tag > [javadoc] /build/biojava-live-1.7.1/src/org/biojava/bio/program/blast2html/HTMLRenderer.java:116: warning - invalid usage of tag < [javadoc] /build/biojava-live-1.7.1/src/org/biojava/bio/program/blast2html/SimpleAlignmentStyler.java:30: warning - invalid usage of tag & [javadoc] /build/biojava-live-1.7.1/src/org/biojava/utils/AbstractChangeable.java:74: warning - invalid usage of tag & [javadoc] /build/biojava-live-1.7.1/src/org/biojava/utils/AbstractChangeable.java:74: warning - invalid usage of tag & [javadoc] /build/biojava-live-1.7.1/src/org/biojava/utils/AbstractChangeable.java:84: warning - invalid usage of tag & [javadoc] /build/biojava-live-1.7.1/src/org/biojava/bio/symbol/SymbolList.java:148: warning - invalid usage of tag > [javadoc] /build/biojava-live-1.7.1/src/org/biojava/bio/symbol/SymbolList.java:148: warning - invalid usage of tag > [javadoc] javadoc: warning - invalid usage of tag &cvsroot [javadoc] javadoc: warning - invalid usage of tag &content [javadoc] javadoc: warning - invalid usage of tag &cvsroot [javadoc] javadoc: warning - invalid usage of tag &content [javadoc] javadoc: warning - invalid usage of tag &cvsroot [javadoc] javadoc: warning - invalid usage of tag &content [javadoc] javadoc: warning - invalid usage of tag &cvsroot [javadoc] javadoc: warning - invalid usage of tag &content [javadoc] javadoc: warning - invalid usage of tag &cvsroot [javadoc] javadoc: warning - invalid usage of tag &content [javadoc] Generating /build/biojava-live-1.7.1/ant-build/docs/biojava/org/biojava/bibliography/package-summary.html... [javadoc] Copying file /build/biojava-live-1.7.1/src/org/biojava/bibliography/doc-files/bibobjects_java.jpg to directory /build/biojava-live-1.7.1/ant-build/docs/biojava/org/biojava/bibliography/doc-files... [javadoc] Copying file /build/biojava-live-1.7.1/src/org/biojava/bibliography/doc-files/BibRefQuery_soap.jpg to directory /build/biojava-live-1.7.1/ant-build/docs/biojava/org/biojava/bibliography/doc-files... [javadoc] Copying file /build/biojava-live-1.7.1/src/org/biojava/bibliography/doc-files/BibRefQuery_simple.jpg to directory /build/biojava-live-1.7.1/ant-build/docs/biojava/org/biojava/bibliography/doc-files... [javadoc] Copying file /build/biojava-live-1.7.1/src/org/biojava/bibliography/doc-files/BibRefQuery_corba.jpg to directory /build/biojava-live-1.7.1/ant-build/docs/biojava/org/biojava/bibliography/doc-files... [javadoc] Building index for all the packages and classes... [javadoc] Building index for all classes... [javadoc] Building index for all classes... [javadoc] Generating /build/biojava-live-1.7.1/ant-build/docs/biojava/help-doc.html... [javadoc] 1 error [javadoc] 100 warnings BUILD SUCCESSFUL Total time: 19 seconds touch build-stamp make[1]: Leaving directory '/build/biojava-live-1.7.1' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_installdirs dh_auto_install debian/rules override_dh_install make[1]: Entering directory '/build/biojava-live-1.7.1' dh_install cp ant-build/biojava.jar /build/biojava-live-1.7.1/debian/libbiojava1.7-java/usr/share/java/biojava1.7.1.jar d=/build/biojava-live-1.7.1/debian/libbiojava-java-doc/usr/share/doc/libbiojava-java/api; \ [ -d $d ] || mkdir -p $d ; \ cp -r ant-build/docs/biojava/* $d for i in /build/biojava-live-1.7.1/debian/libbiojava-java*; do \ if [ -d "" ]; then \ find -name ".svn" | xargs -r rm -r ; \ fi ; \ done ant runtests Buildfile: /build/biojava-live-1.7.1/build.xml init: [echo] Building biojava-1.7.1 [echo] Java Home: /usr/lib/jvm/java-11-openjdk-amd64 [echo] JUnit present: true [echo] JUnit supported by Ant: true [echo] HSQLDB driver present: true [echo] XSLT support: true prepare: prepare-tests: [mkdir] Created dir: /build/biojava-live-1.7.1/ant-build/classes/tests [mkdir] Created dir: /build/biojava-live-1.7.1/ant-build/docs/tests [mkdir] Created dir: /build/biojava-live-1.7.1/reports/tests prepare-biojava: compile-biojava: [javac] /build/biojava-live-1.7.1/build.xml:247: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds package-biojava: compile-tests: [javac] /build/biojava-live-1.7.1/build.xml:265: warning: 'includeantruntime' was not set, defaulting to build.sysclasspath=last; set to false for repeatable builds [javac] Compiling 184 source files to /build/biojava-live-1.7.1/ant-build/classes/tests [javac] warning: [options] bootstrap class path not set in conjunction with -source 8 [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 1 warning runtests: [echo] Running tests: ** [junit] Running org.biojava.bio.AnnotationTypeTest [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.042 sec [junit] Running org.biojava.bio.MergeAnnotationTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 sec [junit] Running org.biojava.bio.alignment.FlexibleAlignmentTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec [junit] Running org.biojava.bio.alignment.SubstitutionMatrixTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 sec [junit] Running org.biojava.bio.dist.DistSerTest [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.223 sec [junit] Running org.biojava.bio.dist.DistributionTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.dist.DistributionToolsTest [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.036 sec [junit] Running org.biojava.bio.dist.TranslatedDistributionTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 sec [junit] Running org.biojava.bio.dp.DPSerializationTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.052 sec [junit] Running org.biojava.bio.dp.EmissionStateEventTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.dp.MarkovModelEventTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 sec [junit] Running org.biojava.bio.molbio.RestrictionEnzymeManagerTest [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.067 sec [junit] Running org.biojava.bio.molbio.RestrictionEnzymeTest [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.program.fastq.FastqBuilderTest [junit] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec [junit] Running org.biojava.bio.program.fastq.FastqTest [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.program.fastq.FastqVariantTest [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.program.fastq.IlluminaFastqReaderTest [junit] Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.036 sec [junit] Running org.biojava.bio.program.fastq.IlluminaFastqWriterTest [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 sec [junit] Running org.biojava.bio.program.fastq.SangerFastqReaderTest [junit] Tests run: 27, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.029 sec [junit] Running org.biojava.bio.program.fastq.SangerFastqWriterTest [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 sec [junit] Running org.biojava.bio.program.fastq.SolexaFastqReaderTest [junit] Tests run: 22, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.022 sec [junit] Running org.biojava.bio.program.fastq.SolexaFastqWriterTest [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.program.indexdb.IndexToolsTest [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.127 sec [junit] Running org.biojava.bio.program.phred.PhredToolsTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.011 sec [junit] Running org.biojava.bio.program.sax.BlastTest [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.155 sec [junit] Running org.biojava.bio.program.sax.blastxml.BlastXMLTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.074 sec [junit] Running org.biojava.bio.program.ssbind.SSBindFasta3_3t08Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.079 sec [junit] Running org.biojava.bio.program.ssbind.SSBindNCBIblastn2_0_11Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.289 sec [junit] Running org.biojava.bio.program.ssbind.SSBindNCBIblastn2_2_3Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.313 sec [junit] Running org.biojava.bio.program.ssbind.SSBindNCBIblastp2_0_11Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.373 sec [junit] Running org.biojava.bio.program.ssbind.SSBindNCBIblastp2_2_3Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.473 sec [junit] Running org.biojava.bio.program.ssbind.SSBindNCBIblastx2_0_11Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.376 sec [junit] Running org.biojava.bio.program.ssbind.SSBindNCBIblastx2_2_3Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.372 sec [junit] Running org.biojava.bio.program.ssbind.SSBindNCBItblastn2_0_11Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.499 sec [junit] Running org.biojava.bio.program.ssbind.SSBindNCBItblastn2_2_3Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.416 sec [junit] Running org.biojava.bio.program.ssbind.SSBindNCBItblastx2_0_11Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.176 sec [junit] Running org.biojava.bio.program.ssbind.SSBindNCBItblastx2_2_3Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 2.035 sec [junit] Running org.biojava.bio.program.ssbind.SSBindWUblastn2_0a19Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.073 sec [junit] Running org.biojava.bio.program.ssbind.SSBindWUblastp2_0a19Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.044 sec [junit] Running org.biojava.bio.program.ssbind.SSBindWUblastx2_0a19Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.083 sec [junit] Running org.biojava.bio.program.ssbind.SSBindWUtblastn2_0a19Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.057 sec [junit] Running org.biojava.bio.program.ssbind.SSBindWUtblastx2_0a19Test [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.084 sec [junit] Running org.biojava.bio.proteomics.IsoelectricPointCalcTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 sec [junit] Running org.biojava.bio.proteomics.MassCalcTest [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec [junit] Running org.biojava.bio.proteomics.aaindex.AAindexStreamReaderTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.055 sec [junit] Running org.biojava.bio.proteomics.aaindex.AAindexTest [junit] Tests run: 17, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.proteomics.aaindex.SimpleSymbolPropertyTableDBTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec [junit] Running org.biojava.bio.search.MaxMismatchPatternTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.search.SeqContentPatternTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojava.bio.search.SimpleSeqSimilaritySearchHitTest [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.search.SimpleSeqSimilaritySearchResultTest [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.search.SimpleSeqSimilaritySearchSubHitTest [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.seq.CircularSequenceTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 sec [junit] Running org.biojava.bio.seq.DNAToolsTest [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.seq.FeatureFilterTest [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 sec [junit] Running org.biojava.bio.seq.FeatureHolderUtilsTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec [junit] Running org.biojava.bio.seq.FilterUtilsTest [junit] Tests run: 23, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.015 sec [junit] Running org.biojava.bio.seq.MergeFeatureHolderTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojava.bio.seq.NewSimpleAssemblyTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.045 sec [junit] Running org.biojava.bio.seq.ProteinToolsTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec [junit] Running org.biojava.bio.seq.RNAToolsTest [junit] Tests run: 34, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 sec [junit] Running org.biojava.bio.seq.SeqSerializationTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.046 sec [junit] Running org.biojava.bio.seq.SimpleAssemblyTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.seq.db.EmblCDROMIndexStoreTest [junit] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.022 sec [junit] Running org.biojava.bio.seq.db.HashSequenceDBTest [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.seq.db.biosql.BioSQLSequenceDBTest [junit] Tests run: 5, Failures: 0, Errors: 5, Skipped: 0, Time elapsed: 0.477 sec [junit] Test org.biojava.bio.seq.db.biosql.BioSQLSequenceDBTest FAILED [junit] Running org.biojava.bio.seq.db.emblcd.DivisionLkpReaderTest [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 sec [junit] Running org.biojava.bio.seq.db.emblcd.EntryNamIdxReaderTest [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 sec [junit] Running org.biojava.bio.seq.db.emblcd.EntryNamRandomAccessTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojava.bio.seq.filter.FilterTransformerTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.02 sec [junit] Running org.biojava.bio.seq.homol.SimpleSimilarityPairFeatureTest [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.seq.impl.GappedSequenceTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec [junit] Running org.biojava.bio.seq.impl.SubSequenceTest [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.019 sec [junit] Running org.biojava.bio.seq.impl.ViewSeqSerializationTest [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.025 sec [junit] Running org.biojava.bio.seq.impl.ViewSequenceTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec [junit] Running org.biojava.bio.seq.io.LocationFormatterTest [junit] Tests run: 26, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.042 sec [junit] Running org.biojava.bio.seq.io.MSFAlignmentFormatTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 sec [junit] Running org.biojava.bio.seq.io.SeqIOToolsTest [junit] Tests run: 4, Failures: 1, Errors: 0, Skipped: 0, Time elapsed: 0.434 sec [junit] Test org.biojava.bio.seq.io.SeqIOToolsTest FAILED [junit] Running org.biojava.bio.seq.io.SmartSequenceBuilderTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.471 sec [junit] Running org.biojava.bio.seq.io.SymbolListCharSequenceTest [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.seq.io.filterxml.FilterXMLTest [junit] Tests run: 12, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.042 sec [junit] Running org.biojava.bio.seq.project.ProjectedFeatureHolderTest [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec [junit] Running org.biojava.bio.structure.MMcifTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 3.755 sec [junit] Running org.biojava.bio.structure.PDBFileParserTest [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 sec [junit] Running org.biojava.bio.structure.PdbFileFormat30Test [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.038 sec [junit] Running org.biojava.bio.structure.SourceCompoundTest [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.281 sec [junit] Running org.biojava.bio.structure.StructurePairAlignerTest [junit] Tests run: 1, Failures: 1, Errors: 0, Skipped: 0, Time elapsed: 1.285 sec [junit] Test org.biojava.bio.structure.StructurePairAlignerTest FAILED [junit] Running org.biojava.bio.structure.StructureTest [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.038 sec [junit] Running org.biojava.bio.structure.StructureToolsTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 sec [junit] Running org.biojava.bio.symbol.AlphabetManagerTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.symbol.AlphabetSerializationTest [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.03 sec [junit] Running org.biojava.bio.symbol.BetweenLocationTest [junit] Tests run: 34, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.symbol.CircularLocationTest [junit] Tests run: 9, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec [junit] Running org.biojava.bio.symbol.CodonPrefToolsTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.034 sec [junit] Running org.biojava.bio.symbol.CompoundLocationTest [junit] Tests run: 11, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.024 sec [junit] Running org.biojava.bio.symbol.CrossProductAlphabetIndexTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 1.543 sec [junit] Running org.biojava.bio.symbol.CrossProductTokenizationTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec [junit] Running org.biojava.bio.symbol.DoubleAlphabetTest [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec [junit] Running org.biojava.bio.symbol.FundamentalAtomicSymbolEventTest [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojava.bio.symbol.GappedSymbolListTest [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.symbol.IndexedNoAmbPackTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 sec [junit] Running org.biojava.bio.symbol.IntegerAlphabetTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.symbol.LinearAlphabetIndexTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.symbol.MergeLocationTest [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.symbol.MotifToolsTest [junit] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.bio.symbol.NameTokenizationTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.symbol.PointLocationTest [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.symbol.RangeLocationTest [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec [junit] Running org.biojava.bio.symbol.SimpleAtomicSymbolEventTest [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.symbol.SimpleBasisSymbolEventTest [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.symbol.SimpleCodonPrefTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 sec [junit] Running org.biojava.bio.symbol.SimpleSymbolEventTest [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec [junit] Running org.biojava.bio.symbol.SimpleSymbolListTest [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.bio.symbol.SimpleWobbleDistributionTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec [junit] Running org.biojava.bio.symbol.SymbolListTest [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.424 sec [junit] Running org.biojava.bio.symbol.SymbolSerializationTest [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 sec [junit] Running org.biojava.bio.symbol.TranslationTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec [junit] Running org.biojava.bio.symbol.UkkonenSuffixTreeTest [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.032 sec [junit] Running org.biojava.directory.OBDARegistryParserTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.directory.RegistryConfigurationTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.directory.SystemRegistryTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec [junit] Running org.biojava.naming.ObdaInitialContextFactoryTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.069 sec [junit] Running org.biojava.naming.ObdaUriParserTest [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.ontology.OntologyTest [junit] Tests run: 21, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojava.ontology.ParseOBOFileTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.106 sec [junit] Running org.biojava.ontology.TermImplTest [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.ontology.TripleImplTest [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.utils.ListToolsTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.utils.RepeatedCharSequenceTest [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.utils.SmallMapTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec [junit] Running org.biojava.utils.automata.NfaTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec [junit] Running org.biojava.utils.lsid.LifeScienceIdentifierTest [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojava.utils.process.ExternalProcessTest [junit] Tests run: 5, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.063 sec [junit] Running org.biojava.utils.regex.PatternCheckerTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 sec [junit] Running org.biojava.utils.regex.RegexTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec [junit] Running org.biojava.utils.walker.WalkerFactoryTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.016 sec [junit] Running org.biojava.utils.walker.WalkerTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.012 sec [junit] Running org.biojavax.CrossReferenceResolutionExceptionTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojavax.DummyCrossReferenceResolverTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 sec [junit] Running org.biojavax.EmptyRichAnnotationTest [junit] Tests run: 14, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojavax.SimpleCommentTest [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojavax.SimpleCrossRefTest [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.012 sec [junit] Running org.biojavax.SimpleDocRefAuthorTest [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.003 sec [junit] Running org.biojavax.SimpleDocRefTest [junit] Tests run: 13, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 sec [junit] Running org.biojavax.SimpleNamespaceTest [junit] Tests run: 13, Failures: 2, Errors: 1, Skipped: 0, Time elapsed: 0.007 sec [junit] Test org.biojavax.SimpleNamespaceTest FAILED [junit] Running org.biojavax.SimpleNoteTest [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojavax.SimpleRankedCrossRefTest [junit] Tests run: 7, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojavax.SimpleRankedDocRefTest [junit] Tests run: 10, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.006 sec [junit] Running org.biojavax.SimpleRichAnnotationTest [junit] Tests run: 16, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojavax.bio.SimpleBioEntryTest [junit] Tests run: 32, Failures: 2, Errors: 0, Skipped: 0, Time elapsed: 0.007 sec [junit] Test org.biojavax.bio.SimpleBioEntryTest FAILED [junit] Running org.biojavax.bio.seq.CompoundRichLocationTest [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.005 sec [junit] Running org.biojavax.bio.seq.MultiSourceCompoundRichLocationTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec [junit] Running org.biojavax.bio.seq.SimpleRichFeatureTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.009 sec [junit] Running org.biojavax.bio.seq.SimpleRichLocationTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec [junit] Running org.biojavax.bio.seq.io.Bug2249_2248Test [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.033 sec [junit] Running org.biojavax.bio.seq.io.Bug2250_2256Test [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.077 sec [junit] Running org.biojavax.bio.seq.io.Bug2255Test [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.008 sec [junit] Running org.biojavax.bio.seq.io.EMBLFormatTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojavax.bio.seq.io.GenbankFormatTest [junit] Tests run: 6, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.019 sec [junit] Running org.biojavax.bio.seq.io.INSDseqFormatTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.029 sec [junit] Running org.biojavax.bio.seq.io.UniProtFormatTest [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.014 sec [junit] Running org.biojavax.bio.taxa.SimpleNCBITaxonNameTest [junit] Tests run: 8, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojavax.ga.functions.ProportionalSelectionTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.01 sec [junit] Running org.biojavax.ga.functions.SimpleCrossOverFunctionTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.002 sec [junit] Running org.biojavax.ga.functions.SimpleMutationFunctionTest [junit] Tests run: 1, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 sec [junit] Running org.biojavax.ga.impl.SimpleOrganismTest [junit] Tests run: 2, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec [junit] Running org.biojavax.ga.impl.SimplePopulationTest [junit] Tests run: 3, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0 sec [junit] Running org.biojavax.ga.util.GAToolsTest [junit] Tests run: 4, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojavax.ga.util.WeightedSetTest [junit] Tests run: 16, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojavax.ontology.SimpleComparableOntologyTest [junit] Tests run: 24, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.004 sec [junit] Running org.biojavax.ontology.SimpleComparableTermTest [junit] Tests run: 20, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec [junit] Running org.biojavax.ontology.SimpleComparableTripleTest [junit] Tests run: 18, Failures: 0, Errors: 0, Skipped: 0, Time elapsed: 0.001 sec BUILD SUCCESSFUL Total time: 27 seconds make[1]: Leaving directory '/build/biojava-live-1.7.1' dh_installdocs dh_installchangelogs debian/rules override_dh_installexamples make[1]: Entering directory '/build/biojava-live-1.7.1' dh_installexamples dh_installexamples -plibbiojava-java-demos demos/* make[1]: Leaving directory '/build/biojava-live-1.7.1' dh_perl debian/rules override_dh_link make[1]: Entering directory '/build/biojava-live-1.7.1' dh_link -p libbiojava-java /usr/share/java/biojava1.7.1.jar /usr/share/java/biojava.jar # thinking about svn snapshots if [ "1.7" != "1.7.1" ]; then \ dh_link -p libbiojava1.7-java \ /usr/share/java/biojava1.7.1.jar \ /usr/share/java/biojava1.7.jar; \ fi dh_link # use .link files for version independant linking make[1]: Leaving directory '/build/biojava-live-1.7.1' dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libbiojava1.7-java: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'libbiojava-java-doc' in '../libbiojava-java-doc_1.7.1-8_all.deb'. dpkg-deb: building package 'libbiojava-java-demos' in '../libbiojava-java-demos_1.7.1-8_all.deb'. dpkg-deb: building package 'libbiojava-java' in '../libbiojava-java_1.7.1-8_all.deb'. dpkg-deb: building package 'libbiojava1.7-java' in '../libbiojava1.7-java_1.7.1-8_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../biojava-live_1.7.1-8_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/23796 and its subdirectories I: Current time: Sat Aug 7 03:35:10 -12 2021 I: pbuilder-time-stamp: 1628350510 Sat Aug 7 15:35:11 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Sat Aug 7 15:35:11 UTC 2021 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Sat Aug 7 15:37:38 UTC 2021 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Sat Aug 7 15:37:39 UTC 2021 I: biojava-live_1.7.1-8_amd64.changes: Format: 1.8 Date: Thu, 01 Nov 2018 07:10:52 +0100 Source: biojava-live Binary: libbiojava-java libbiojava-java-demos libbiojava-java-doc libbiojava1.7-java Architecture: all Version: 1:1.7.1-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libbiojava-java - Java API to biological data and applications (default version) libbiojava-java-demos - Example programs for BioJava libbiojava-java-doc - [Biology] Documentation for BioJava libbiojava1.7-java - Java API to biological data and applications (version 1.7) Closes: 912643 Changes: biojava-live (1:1.7.1-8) unstable; urgency=medium . * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Remove trailing whitespace in debian/changelog * Remove trailing whitespace in debian/rules * Set release to 8 since CORBA classes are removed in Java 11, and no replacement available in Debian (Closes: #912643) Checksums-Sha1: 302bec372c2e8ae97018d60a44a44c937c62a0df 8441 biojava-live_1.7.1-8_amd64.buildinfo 69d72dca6fb0ebaf13a9a9e18f4c4c927d0701b8 2841708 libbiojava-java-demos_1.7.1-8_all.deb 4595e4e64f54c4787e52485a98c04b689d4f5b62 2699880 libbiojava-java-doc_1.7.1-8_all.deb 642f03aab50292c6d05bc528161cba20b3ba78d8 48520 libbiojava-java_1.7.1-8_all.deb 738a974eb37ffa654fba84e4ffa88c5f23b45cc8 3273944 libbiojava1.7-java_1.7.1-8_all.deb Checksums-Sha256: c8735b2be1c98b2dd41f58575c162d9db66167ca368f7bec431cb376afbb038d 8441 biojava-live_1.7.1-8_amd64.buildinfo be8104298646444a42bb6e8fa743ba8fe887cfafb63cf4a231e99abc7511fe38 2841708 libbiojava-java-demos_1.7.1-8_all.deb f1789060c50408e85931adbb514ed81ec98a4253a67b6f7ef799a06ca269d437 2699880 libbiojava-java-doc_1.7.1-8_all.deb 944f1cd1d9558acb2f15c884d2153d0f9488e9a1dc0ae929e647c9e5d190d9b2 48520 libbiojava-java_1.7.1-8_all.deb 513d03ebd8f131c88e01ddcee6ba34288cb2911f9a37a13f22c106c52fbd5e61 3273944 libbiojava1.7-java_1.7.1-8_all.deb Files: 12cf8d76c393ecdd866874d49caaece7 8441 java optional biojava-live_1.7.1-8_amd64.buildinfo 5683e76760036a349794844754d05ac9 2841708 java optional libbiojava-java-demos_1.7.1-8_all.deb 2f47040601cd6bbe3549e963e6c50556 2699880 doc optional libbiojava-java-doc_1.7.1-8_all.deb 69524df50a90e7c9a17128eae3d3c939 48520 java optional libbiojava-java_1.7.1-8_all.deb b67e30440b4d8f9ee48f60b4feaba237 3273944 java optional libbiojava1.7-java_1.7.1-8_all.deb Sat Aug 7 15:39:45 UTC 2021 I: diffoscope 180 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.ZuAopwKDwc/biojava-live_1.7.1-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.ZuAopwKDwc/biojava-live_1.7.1-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.ZuAopwKDwc/biojava-live_1.7.1-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.ZuAopwKDwc/b1/biojava-live_1.7.1-8_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.ZuAopwKDwc/b2/biojava-live_1.7.1-8_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.316s) 0.316s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.101s) 0.101s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sat Aug 7 15:41:00 UTC 2021 I: diffoscope 180 found no differences in the changes files, and a .buildinfo file also exists. Sat Aug 7 15:41:00 UTC 2021 I: biojava-live from buster built successfully and reproducibly on amd64. Sat Aug 7 15:41:02 UTC 2021 I: Submitting .buildinfo files to external archives: Sat Aug 7 15:41:02 UTC 2021 I: Submitting 12K b1/biojava-live_1.7.1-8_amd64.buildinfo.asc Sat Aug 7 15:41:04 UTC 2021 I: Submitting 12K b2/biojava-live_1.7.1-8_amd64.buildinfo.asc Sat Aug 7 15:41:04 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Aug 7 15:41:04 UTC 2021 I: Done submitting .buildinfo files. Sat Aug 7 15:41:04 UTC 2021 I: Removing signed biojava-live_1.7.1-8_amd64.buildinfo.asc files: removed './b1/biojava-live_1.7.1-8_amd64.buildinfo.asc' removed './b2/biojava-live_1.7.1-8_amd64.buildinfo.asc'