Fri Dec 18 03:37:58 UTC 2020 I: starting to build bambamc/buster/amd64 on jenkins on '2020-12-18 03:37' Fri Dec 18 03:37:58 UTC 2020 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_4/48312/console.log Fri Dec 18 03:37:58 UTC 2020 I: Downloading source for buster/bambamc=0.0.50-3 --2020-12-18 03:37:58-- http://deb.debian.org/debian/pool/main/b/bambamc/bambamc_0.0.50-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2094 (2.0K) Saving to: ‘bambamc_0.0.50-3.dsc’ 0K .. 100% 260M=0s 2020-12-18 03:37:58 (260 MB/s) - ‘bambamc_0.0.50-3.dsc’ saved [2094/2094] Fri Dec 18 03:37:58 UTC 2020 I: bambamc_0.0.50-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: bambamc Binary: libbambamc0, libbambamc-dev Architecture: any Version: 0.0.50-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , German Tischler , Roland Fehrenbacher Homepage: https://github.com/gt1/bambamc Standards-Version: 4.1.4 Vcs-Browser: https://salsa.debian.org/med-team/bambamc Vcs-Git: https://salsa.debian.org/med-team/bambamc.git Build-Depends: debhelper (>= 11~), d-shlibs, pkg-config, zlib1g-dev Package-List: libbambamc-dev deb libdevel optional arch=any libbambamc0 deb libs optional arch=any Checksums-Sha1: 27fe9b34d3a04ca86ba6fb0374302c23de865a70 63943 bambamc_0.0.50.orig.tar.gz 3bd88b4c4cfa0ab0a328fe30836882f1da9340a4 2172 bambamc_0.0.50-3.debian.tar.xz Checksums-Sha256: f1ca5b35ce115c3aa3a3630228293cab333d239b26476b271a056f038abdc7a5 63943 bambamc_0.0.50.orig.tar.gz 31aa2a28d6429635a62ea8ed23daf25f66d97ec7e0155766404912ba2acd514d 2172 bambamc_0.0.50-3.debian.tar.xz Files: d79e11cefcb28c57d71586f6b4103134 63943 bambamc_0.0.50.orig.tar.gz a32aecb0a2744c59cdd459209e96ce72 2172 bambamc_0.0.50-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAls7RnkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEKyw/9EZ69JRrEPhG78JsyXvFOQkIlKPCDTAKe w3YlRBBUDcq34i89j7gblPi9RyoNqrVJju6pp26hZXmT6iGFdSafkN0PK9im+v5b 6Ghb2/eWpoKPqomQcJVxPeUJT8Y9BUx/ZWy2p0zk/LSAqY4knHHITZWVR7geOjQH kTmUOqO7Bdunb8ySzCZyeSrLf3o3N6vk/12VeZ0a6fp0wbY5xVNY6ghJvjTM7g13 jGTQg2XmcGZ9Vs6hPDIsslWTdQN7NXPuRECWAZqDRtgumbx341Nh0tdI6rhV5bpX /wk1bxtXn3pEVUHSp6UfkQEETOrGH3ygL0tSma2Tyg7DmHK9KEAGFO+6HGErAbG+ c8SF3ey47Jqas/SPDxHMfGlV8TDQmAbUjstxB0M2oyTZeojJt173GBXfr6tccNL9 CZOOzptp4D/kxfACJN5P6AZlgpkf1QaW8/OHHO/x9fndflpo3GlNMax39TqgcuRl j8PW+YYlC2HEYRgHcXHnQKsPztN6raLy+hfmzJ4iAaSY6/Ngeyn+YE6RHWuUFTr5 KGiB7IWIsNAEoXCO7tLino5WD0IkfhIBn1oXEcZZzXyiz9A/adoy925L+VniEEK0 TEKkoxfz4Hvbfs6gPhhuVtZ1kT3PNc515VWfK836g+aDprY06kvHeY1+n+kJ4gbi dXkdJh8cvqA= =tmOA -----END PGP SIGNATURE----- Fri Dec 18 03:37:58 UTC 2020 I: Checking whether the package is not for us Fri Dec 18 03:37:58 UTC 2020 I: Starting 1st build on remote node ionos15-amd64.debian.net. Fri Dec 18 03:37:58 UTC 2020 I: Preparing to do remote build '1' on ionos15-amd64.debian.net. Fri Dec 18 03:38:40 UTC 2020 I: Deleting $TMPDIR on ionos15-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jan 19 22:01:02 -12 2022 I: pbuilder-time-stamp: 1642672862 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [bambamc_0.0.50-3.dsc] I: copying [./bambamc_0.0.50.orig.tar.gz] I: copying [./bambamc_0.0.50-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Jul 2 21:48:41 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./bambamc_0.0.50-3.dsc dpkg-source: info: extracting bambamc in bambamc-0.0.50 dpkg-source: info: unpacking bambamc_0.0.50.orig.tar.gz dpkg-source: info: unpacking bambamc_0.0.50-3.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/55454/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='ae2e650f06e64dbe95a42ad97793a1f2' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='55454' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.X93XXnvnS3/pbuilderrc_0VL2 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.X93XXnvnS3/b1 --logfile b1/build.log bambamc_0.0.50-3.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos15-amd64 5.9.0-0.bpo.2-amd64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jan 9 02:47 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/55454/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), d-shlibs, pkg-config, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} d-shlibs{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbsd0{a} libcroco3{a} libelf1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libicu63{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libpipeline1{a} libsigsegv2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} pkg-config{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libglib2.0-data libgpm2 libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 36 newly installed, 0 to remove and 0 not upgraded. Need to get 19.3 MB of archives. After unpacking 70.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u1 [242 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u1 [117 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u1 [66.4 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 d-shlibs all 0.84 [17.2 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u2 [1258 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u1 [689 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1 [214 kB] Fetched 19.3 MB in 0s (74.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.35-4+deb10u1_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u1) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../08-libmagic1_1%3a5.35-4+deb10u1_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4+deb10u1) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.35-4+deb10u1_amd64.deb ... Unpacking file (1:5.35-4+deb10u1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../11-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. 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Setting up d-shlibs (0.84) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libtool (2.4.6-9) ... Setting up m4 (1.4.18-2) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.12-3) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gettext (0.19.8.1-9) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up intltool-debian (0.35.0+20060710.5) ... Setting up po-debconf (1.0.21) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/bambamc-0.0.50/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package bambamc dpkg-buildpackage: info: source version 0.0.50-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' configure.in:4: installing './compile' configure.in:3: installing './config.guess' configure.in:3: installing './config.sub' configure.in:7: installing './install-sh' configure.in:7: installing './missing' automake: warning: autoconf input should be named 'configure.ac', not 'configure.in' src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamCollationHash.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least a source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, automake: this behaviour will change in future Automake versions: they will automake: unconditionally cause object files to be placed in the same subdirectory automake: of the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamCollatorInterface.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_FormatAlignment.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamCollationHashEntry.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_FormatNumber.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamCollationOutputVector.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamHeaderInfo.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_Hash.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamCollationTempFileGenerator.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamWriter.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_List.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamCollationVector.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_CharBuffer.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_ListNode.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamCollator.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_Chromosome.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_GzipReader.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_LineParsing.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamFileHeader.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamAlignmentPut.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamSingleAlignment.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_BamFileDecoder.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_GzipWriter.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_GzipFileDecoder.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_BgzfCompressor.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_LineBuffer.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_SamInfo.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_SamFileDecoder.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_SamBamFileDecoder.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:6: warning: source file 'bambamc/BamBam_StrDup.c' is in a subdirectory, src/Makefile.am:6: but option 'subdir-objects' is disabled src/Makefile.am:40: warning: source file 'test/bamreadertest.c' is in a subdirectory, src/Makefile.am:40: but option 'subdir-objects' is disabled src/Makefile.am:44: warning: source file 'test/bamwritertest.c' is in a subdirectory, src/Makefile.am:44: but option 'subdir-objects' is disabled src/Makefile.am: installing './depcomp' dh_auto_configure ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/x86_64-linux-gnu --libexecdir=\${prefix}/lib/x86_64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: WARNING: unrecognized options: --disable-maintainer-mode checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking target system type... x86_64-pc-linux-gnu checking how to print strings... printf checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking whether gcc understands -c and -o together... yes checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by gcc... /usr/bin/ld checking if the linker (/usr/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/nm -B checking the name lister (/usr/bin/nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to x86_64-pc-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/bin/ld option to reload object files... -r checking for objdump... objdump checking how to recognize dependent libraries... pass_all checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for ar... ar checking for archiver @FILE support... @ checking for strip... strip checking for ranlib... ranlib checking for gawk... no checking for mawk... mawk checking command to parse /usr/bin/nm -B output from gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if gcc supports -fno-rtti -fno-exceptions... no checking for gcc option to produce PIC... -fPIC -DPIC checking if gcc PIC flag -fPIC -DPIC works... yes checking if gcc static flag -static works... yes checking if gcc supports -c -o file.o... yes checking if gcc supports -c -o file.o... (cached) yes checking whether the gcc linker (/usr/bin/ld -m elf_x86_64) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking whether make sets $(MAKE)... yes checking whether make supports the include directive... yes (GNU style) checking whether make supports nested variables... yes checking dependency style of gcc... none checking for gcc option to accept ISO C99... none needed checking for ANSI C header files... (cached) yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for zlib... yes checking for zlib... yes checking whether we can compile a zlib program... yes checking for _mkdir... no checking direct.h usability... no checking direct.h presence... no checking for direct.h... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating ubuntu.sh config.status: creating bambamc.pc config.status: creating src/bambamc/BamBam_Config.h config.status: creating config.h config.status: executing libtool commands config.status: executing depfiles commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build make -j16 make[1]: Entering directory '/build/bambamc-0.0.50' make all-recursive make[2]: Entering directory '/build/bambamc-0.0.50' Making all in src make[3]: Entering directory '/build/bambamc-0.0.50/src' gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o bamreadertest-bamreadertest.o `test -f 'test/bamreadertest.c' || echo './'`test/bamreadertest.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamCollationHash.lo `test -f 'bambamc/BamBam_BamCollationHash.c' || echo './'`bambamc/BamBam_BamCollationHash.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamCollatorInterface.lo `test -f 'bambamc/BamBam_BamCollatorInterface.c' || echo './'`bambamc/BamBam_BamCollatorInterface.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_FormatAlignment.lo `test -f 'bambamc/BamBam_FormatAlignment.c' || echo './'`bambamc/BamBam_FormatAlignment.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamCollationHashEntry.lo `test -f 'bambamc/BamBam_BamCollationHashEntry.c' || echo './'`bambamc/BamBam_BamCollationHashEntry.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_FormatNumber.lo `test -f 'bambamc/BamBam_FormatNumber.c' || echo './'`bambamc/BamBam_FormatNumber.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamCollationOutputVector.lo `test -f 'bambamc/BamBam_BamCollationOutputVector.c' || echo './'`bambamc/BamBam_BamCollationOutputVector.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamHeaderInfo.lo `test -f 'bambamc/BamBam_BamHeaderInfo.c' || echo './'`bambamc/BamBam_BamHeaderInfo.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_Hash.lo `test -f 'bambamc/BamBam_Hash.c' || echo './'`bambamc/BamBam_Hash.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamCollationTempFileGenerator.lo `test -f 'bambamc/BamBam_BamCollationTempFileGenerator.c' || echo './'`bambamc/BamBam_BamCollationTempFileGenerator.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamWriter.lo `test -f 'bambamc/BamBam_BamWriter.c' || echo './'`bambamc/BamBam_BamWriter.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_List.lo `test -f 'bambamc/BamBam_List.c' || echo './'`bambamc/BamBam_List.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamCollationVector.lo `test -f 'bambamc/BamBam_BamCollationVector.c' || echo './'`bambamc/BamBam_BamCollationVector.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_CharBuffer.lo `test -f 'bambamc/BamBam_CharBuffer.c' || echo './'`bambamc/BamBam_CharBuffer.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_ListNode.lo `test -f 'bambamc/BamBam_ListNode.c' || echo './'`bambamc/BamBam_ListNode.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamCollator.lo `test -f 'bambamc/BamBam_BamCollator.c' || echo './'`bambamc/BamBam_BamCollator.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_List.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_List.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamHeaderInfo.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamHeaderInfo.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollatorInterface.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamCollatorInterface.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollationVector.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamCollationVector.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_ListNode.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_ListNode.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_Hash.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_Hash.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollationTempFileGenerator.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamCollationTempFileGenerator.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollationHash.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamCollationHash.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollationHashEntry.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamCollationHashEntry.o bambamc/BamBam_Hash.c: In function 'hash': bambamc/BamBam_Hash.c:83:13: warning: this statement may fall through [-Wimplicit-fallthrough=] case 11: c+=((uint32_t)k[10]<<24); ~^~~~~~~~~~~~~~~~~~~~~~~ bambamc/BamBam_Hash.c:84:3: note: here case 10: c+=((uint32_t)k[9]<<16); ^~~~ bambamc/BamBam_Hash.c:84:13: warning: this statement may fall through [-Wimplicit-fallthrough=] case 10: c+=((uint32_t)k[9]<<16); ~^~~~~~~~~~~~~~~~~~~~~~ bambamc/BamBam_Hash.c:85:3: note: here case 9 : c+=((uint32_t)k[8]<<8); ^~~~ bambamc/BamBam_Hash.c:85:13: warning: this statement may fall through [-Wimplicit-fallthrough=] case 9 : c+=((uint32_t)k[8]<<8); ~^~~~~~~~~~~~~~~~~~~~~ bambamc/BamBam_Hash.c:87:3: note: here case 8 : b+=((uint32_t)k[7]<<24); ^~~~ bambamc/BamBam_Hash.c:87:13: warning: this statement may fall through [-Wimplicit-fallthrough=] case 8 : b+=((uint32_t)k[7]<<24); ~^~~~~~~~~~~~~~~~~~~~~~ bambamc/BamBam_Hash.c:88:3: note: here case 7 : b+=((uint32_t)k[6]<<16); ^~~~ bambamc/BamBam_Hash.c:88:13: warning: this statement may fall through [-Wimplicit-fallthrough=] case 7 : b+=((uint32_t)k[6]<<16); ~^~~~~~~~~~~~~~~~~~~~~~ bambamc/BamBam_Hash.c:89:3: note: here case 6 : b+=((uint32_t)k[5]<<8); ^~~~ bambamc/BamBam_Hash.c:89:13: warning: this statement may fall through [-Wimplicit-fallthrough=] case 6 : b+=((uint32_t)k[5]<<8); ~^~~~~~~~~~~~~~~~~~~~~ bambamc/BamBam_Hash.c:90:3: note: here case 5 : b+=k[4]; ^~~~ bambamc/BamBam_Hash.c:90:13: warning: this statement may fall through [-Wimplicit-fallthrough=] case 5 : b+=k[4]; ~^~~~~~ bambamc/BamBam_Hash.c:91:3: note: here case 4 : a+=((uint32_t)k[3]<<24); ^~~~ bambamc/BamBam_Hash.c:91:13: warning: this statement may fall through [-Wimplicit-fallthrough=] case 4 : a+=((uint32_t)k[3]<<24); ~^~~~~~~~~~~~~~~~~~~~~~ bambamc/BamBam_Hash.c:92:3: note: here case 3 : a+=((uint32_t)k[2]<<16); ^~~~ bambamc/BamBam_Hash.c:92:13: warning: this statement may fall through [-Wimplicit-fallthrough=] case 3 : a+=((uint32_t)k[2]<<16); ~^~~~~~~~~~~~~~~~~~~~~~ bambamc/BamBam_Hash.c:93:3: note: here case 2 : a+=((uint32_t)k[1]<<8); ^~~~ bambamc/BamBam_Hash.c:93:13: warning: this statement may fall through [-Wimplicit-fallthrough=] case 2 : a+=((uint32_t)k[1]<<8); ~^~~~~~~~~~~~~~~~~~~~~ bambamc/BamBam_Hash.c:94:3: note: here case 1 : a+=k[0]; ^~~~ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamWriter.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamWriter.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_FormatNumber.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_FormatNumber.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollator.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamCollator.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_FormatAlignment.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_FormatAlignment.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollationOutputVector.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamCollationOutputVector.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_Chromosome.lo `test -f 'bambamc/BamBam_Chromosome.c' || echo './'`bambamc/BamBam_Chromosome.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_CharBuffer.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_CharBuffer.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_List.c -o libbambamc_la-BamBam_List.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_ListNode.c -o libbambamc_la-BamBam_ListNode.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_Hash.c -o libbambamc_la-BamBam_Hash.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollationHash.c -o libbambamc_la-BamBam_BamCollationHash.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollationTempFileGenerator.c -o libbambamc_la-BamBam_BamCollationTempFileGenerator.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollationHashEntry.c -o libbambamc_la-BamBam_BamCollationHashEntry.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamWriter.c -o libbambamc_la-BamBam_BamWriter.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_FormatNumber.c -o libbambamc_la-BamBam_FormatNumber.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollationVector.c -o libbambamc_la-BamBam_BamCollationVector.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollationOutputVector.c -o libbambamc_la-BamBam_BamCollationOutputVector.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_CharBuffer.c -o libbambamc_la-BamBam_CharBuffer.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_Chromosome.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_Chromosome.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_GzipReader.lo `test -f 'bambamc/BamBam_GzipReader.c' || echo './'`bambamc/BamBam_GzipReader.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_LineParsing.lo `test -f 'bambamc/BamBam_LineParsing.c' || echo './'`bambamc/BamBam_LineParsing.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamFileHeader.lo `test -f 'bambamc/BamBam_BamFileHeader.c' || echo './'`bambamc/BamBam_BamFileHeader.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamHeaderInfo.c -o libbambamc_la-BamBam_BamHeaderInfo.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamAlignmentPut.lo `test -f 'bambamc/BamBam_BamAlignmentPut.c' || echo './'`bambamc/BamBam_BamAlignmentPut.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollatorInterface.c -o libbambamc_la-BamBam_BamCollatorInterface.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_FormatAlignment.c -o libbambamc_la-BamBam_FormatAlignment.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_Chromosome.c -o libbambamc_la-BamBam_Chromosome.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamSingleAlignment.lo `test -f 'bambamc/BamBam_BamSingleAlignment.c' || echo './'`bambamc/BamBam_BamSingleAlignment.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BamFileDecoder.lo `test -f 'bambamc/BamBam_BamFileDecoder.c' || echo './'`bambamc/BamBam_BamFileDecoder.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_GzipWriter.lo `test -f 'bambamc/BamBam_GzipWriter.c' || echo './'`bambamc/BamBam_GzipWriter.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_GzipFileDecoder.lo `test -f 'bambamc/BamBam_GzipFileDecoder.c' || echo './'`bambamc/BamBam_GzipFileDecoder.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_LineParsing.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_LineParsing.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_BgzfCompressor.lo `test -f 'bambamc/BamBam_BgzfCompressor.c' || echo './'`bambamc/BamBam_BgzfCompressor.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamFileHeader.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamFileHeader.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_GzipReader.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_GzipReader.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_LineBuffer.lo `test -f 'bambamc/BamBam_LineBuffer.c' || echo './'`bambamc/BamBam_LineBuffer.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamAlignmentPut.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamAlignmentPut.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_SamInfo.lo `test -f 'bambamc/BamBam_SamInfo.c' || echo './'`bambamc/BamBam_SamInfo.c /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_SamFileDecoder.lo `test -f 'bambamc/BamBam_SamFileDecoder.c' || echo './'`bambamc/BamBam_SamFileDecoder.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamSingleAlignment.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamSingleAlignment.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamFileDecoder.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BamFileDecoder.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BgzfCompressor.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_BgzfCompressor.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_GzipWriter.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_GzipWriter.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_LineParsing.c -o libbambamc_la-BamBam_LineParsing.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_GzipFileDecoder.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_GzipFileDecoder.o bambamc/BamBam_BamSingleAlignment.c: In function 'BamBam_BamSingleAlignment_LoadAlignment': bambamc/BamBam_BamSingleAlignment.c:882:33: warning: array subscript has type 'char' [-Wchar-subscripts] if ( ! bambamc_qnameValidTable[*cc] ) ^ bambamc/BamBam_BamSingleAlignment.c:910:58: warning: comparison of integer expressions of different signedness: 'long int' and 'long unsigned int' [-Wsign-compare] if ( ue-BamBam_BamSingleAlignment_GetEncodedCigar(data) < BamBam_BamSingleAlignment_GetNC(data)*sizeof(uint32_t) ) ^ bambamc/BamBam_BamSingleAlignment.c:957:15: warning: comparison of integer expressions of different signedness: 'uint64_t' {aka 'long unsigned int'} and 'int32_t' {aka 'int'} [-Wsign-compare] if ( ciglen != BamBam_BamSingleAlignment_GetLSeq(data) ) ^~ bambamc/BamBam_BamSingleAlignment.c:1089:22: warning: comparison of integer expressions of different signedness: 'long int' and 'uint64_t' {aka 'long unsigned int'} [-Wsign-compare] if ( (ue-auxc) < (3+1+4+ 1*alen) ) ^ bambamc/BamBam_BamSingleAlignment.c:1098:22: warning: comparison of integer expressions of different signedness: 'long int' and 'uint64_t' {aka 'long unsigned int'} [-Wsign-compare] if ( (ue-auxc) < (3+1+4+ 2*alen) ) ^ bambamc/BamBam_BamSingleAlignment.c:1108:22: warning: comparison of integer expressions of different signedness: 'long int' and 'uint64_t' {aka 'long unsigned int'} [-Wsign-compare] if ( (ue-auxc) < (3+1+4+ 4*alen) ) ^ libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_LineBuffer.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_LineBuffer.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_SamInfo.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_SamInfo.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_GzipReader.c -o libbambamc_la-BamBam_GzipReader.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_SamFileDecoder.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_SamFileDecoder.o /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_SamBamFileDecoder.lo `test -f 'bambamc/BamBam_SamBamFileDecoder.c' || echo './'`bambamc/BamBam_SamBamFileDecoder.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamCollator.c -o libbambamc_la-BamBam_BamCollator.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=compile gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o libbambamc_la-BamBam_StrDup.lo `test -f 'bambamc/BamBam_StrDup.c' || echo './'`bambamc/BamBam_StrDup.c gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c -o bamwritertest-bamwritertest.o `test -f 'test/bamwritertest.c' || echo './'`test/bamwritertest.c libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamFileDecoder.c -o libbambamc_la-BamBam_BamFileDecoder.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_GzipFileDecoder.c -o libbambamc_la-BamBam_GzipFileDecoder.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_GzipWriter.c -o libbambamc_la-BamBam_GzipWriter.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_LineBuffer.c -o libbambamc_la-BamBam_LineBuffer.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BgzfCompressor.c -o libbambamc_la-BamBam_BgzfCompressor.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_StrDup.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_StrDup.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_SamFileDecoder.c -o libbambamc_la-BamBam_SamFileDecoder.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_SamBamFileDecoder.c -fPIC -DPIC -o .libs/libbambamc_la-BamBam_SamBamFileDecoder.o libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_StrDup.c -o libbambamc_la-BamBam_StrDup.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_SamBamFileDecoder.c -o libbambamc_la-BamBam_SamBamFileDecoder.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamAlignmentPut.c -o libbambamc_la-BamBam_BamAlignmentPut.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_SamInfo.c -o libbambamc_la-BamBam_SamInfo.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamFileHeader.c -o libbambamc_la-BamBam_BamFileHeader.o >/dev/null 2>&1 libtool: compile: gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -W -Wall -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -c bambamc/BamBam_BamSingleAlignment.c -o libbambamc_la-BamBam_BamSingleAlignment.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -version-info 0:50:0 -Wl,-z,relro -o libbambamc.la -rpath /usr/lib/x86_64-linux-gnu libbambamc_la-BamBam_BamCollationHash.lo libbambamc_la-BamBam_BamCollatorInterface.lo libbambamc_la-BamBam_FormatAlignment.lo libbambamc_la-BamBam_BamCollationHashEntry.lo libbambamc_la-BamBam_FormatNumber.lo libbambamc_la-BamBam_BamCollationOutputVector.lo libbambamc_la-BamBam_BamHeaderInfo.lo libbambamc_la-BamBam_Hash.lo libbambamc_la-BamBam_BamCollationTempFileGenerator.lo libbambamc_la-BamBam_BamWriter.lo libbambamc_la-BamBam_List.lo libbambamc_la-BamBam_BamCollationVector.lo libbambamc_la-BamBam_CharBuffer.lo libbambamc_la-BamBam_ListNode.lo libbambamc_la-BamBam_BamCollator.lo libbambamc_la-BamBam_Chromosome.lo libbambamc_la-BamBam_GzipReader.lo libbambamc_la-BamBam_LineParsing.lo libbambamc_la-BamBam_BamFileHeader.lo libbambamc_la-BamBam_BamAlignmentPut.lo libbambamc_la-BamBam_BamSingleAlignment.lo libbambamc_la-BamBam_BamFileDecoder.lo libbambamc_la-BamBam_GzipWriter.lo libbambamc_la-BamBam_GzipFileDecoder.lo libbambamc_la-BamBam_BgzfCompressor.lo libbambamc_la-BamBam_LineBuffer.lo libbambamc_la-BamBam_SamInfo.lo libbambamc_la-BamBam_SamFileDecoder.lo libbambamc_la-BamBam_SamBamFileDecoder.lo libbambamc_la-BamBam_StrDup.lo -lz libtool: link: gcc -shared -fPIC -DPIC .libs/libbambamc_la-BamBam_BamCollationHash.o .libs/libbambamc_la-BamBam_BamCollatorInterface.o .libs/libbambamc_la-BamBam_FormatAlignment.o .libs/libbambamc_la-BamBam_BamCollationHashEntry.o .libs/libbambamc_la-BamBam_FormatNumber.o .libs/libbambamc_la-BamBam_BamCollationOutputVector.o .libs/libbambamc_la-BamBam_BamHeaderInfo.o .libs/libbambamc_la-BamBam_Hash.o .libs/libbambamc_la-BamBam_BamCollationTempFileGenerator.o .libs/libbambamc_la-BamBam_BamWriter.o .libs/libbambamc_la-BamBam_List.o .libs/libbambamc_la-BamBam_BamCollationVector.o .libs/libbambamc_la-BamBam_CharBuffer.o .libs/libbambamc_la-BamBam_ListNode.o .libs/libbambamc_la-BamBam_BamCollator.o .libs/libbambamc_la-BamBam_Chromosome.o .libs/libbambamc_la-BamBam_GzipReader.o .libs/libbambamc_la-BamBam_LineParsing.o .libs/libbambamc_la-BamBam_BamFileHeader.o .libs/libbambamc_la-BamBam_BamAlignmentPut.o .libs/libbambamc_la-BamBam_BamSingleAlignment.o .libs/libbambamc_la-BamBam_BamFileDecoder.o .libs/libbambamc_la-BamBam_GzipWriter.o .libs/libbambamc_la-BamBam_GzipFileDecoder.o .libs/libbambamc_la-BamBam_BgzfCompressor.o .libs/libbambamc_la-BamBam_LineBuffer.o .libs/libbambamc_la-BamBam_SamInfo.o .libs/libbambamc_la-BamBam_SamFileDecoder.o .libs/libbambamc_la-BamBam_SamBamFileDecoder.o .libs/libbambamc_la-BamBam_StrDup.o -lz -g -O2 -fstack-protector-strong -O3 -Wl,-z -Wl,relro -Wl,-soname -Wl,libbambamc.so.0 -o .libs/libbambamc.so.0.0.50 libtool: link: (cd ".libs" && rm -f "libbambamc.so.0" && ln -s "libbambamc.so.0.0.50" "libbambamc.so.0") libtool: link: (cd ".libs" && rm -f "libbambamc.so" && ln -s "libbambamc.so.0.0.50" "libbambamc.so") libtool: link: ar cru .libs/libbambamc.a libbambamc_la-BamBam_BamCollationHash.o libbambamc_la-BamBam_BamCollatorInterface.o libbambamc_la-BamBam_FormatAlignment.o libbambamc_la-BamBam_BamCollationHashEntry.o libbambamc_la-BamBam_FormatNumber.o libbambamc_la-BamBam_BamCollationOutputVector.o libbambamc_la-BamBam_BamHeaderInfo.o libbambamc_la-BamBam_Hash.o libbambamc_la-BamBam_BamCollationTempFileGenerator.o libbambamc_la-BamBam_BamWriter.o libbambamc_la-BamBam_List.o libbambamc_la-BamBam_BamCollationVector.o libbambamc_la-BamBam_CharBuffer.o libbambamc_la-BamBam_ListNode.o libbambamc_la-BamBam_BamCollator.o libbambamc_la-BamBam_Chromosome.o libbambamc_la-BamBam_GzipReader.o libbambamc_la-BamBam_LineParsing.o libbambamc_la-BamBam_BamFileHeader.o libbambamc_la-BamBam_BamAlignmentPut.o libbambamc_la-BamBam_BamSingleAlignment.o libbambamc_la-BamBam_BamFileDecoder.o libbambamc_la-BamBam_GzipWriter.o libbambamc_la-BamBam_GzipFileDecoder.o libbambamc_la-BamBam_BgzfCompressor.o libbambamc_la-BamBam_LineBuffer.o libbambamc_la-BamBam_SamInfo.o libbambamc_la-BamBam_SamFileDecoder.o libbambamc_la-BamBam_SamBamFileDecoder.o libbambamc_la-BamBam_StrDup.o ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: ranlib .libs/libbambamc.a libtool: link: ( cd ".libs" && rm -f "libbambamc.la" && ln -s "../libbambamc.la" "libbambamc.la" ) /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -Wl,-z,relro -o bamwritertest bamwritertest-bamwritertest.o libbambamc.la -lz /bin/bash ../libtool --tag=CC --mode=link gcc -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -Wl,-z,relro -o bamreadertest bamreadertest-bamreadertest.o libbambamc.la -lz libtool: link: gcc -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -Wl,-z -Wl,relro -o .libs/bamwritertest bamwritertest-bamwritertest.o ./.libs/libbambamc.so -lz libtool: link: gcc -g -O2 -ffile-prefix-map=/build/bambamc-0.0.50=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -rdynamic -Wl,-z -Wl,relro -o .libs/bamreadertest bamreadertest-bamreadertest.o ./.libs/libbambamc.so -lz make[3]: Leaving directory '/build/bambamc-0.0.50/src' make[3]: Entering directory '/build/bambamc-0.0.50' make[3]: Leaving directory '/build/bambamc-0.0.50' make[2]: Leaving directory '/build/bambamc-0.0.50' make[1]: Leaving directory '/build/bambamc-0.0.50' dh_auto_test make -j16 check VERBOSE=1 make[1]: Entering directory '/build/bambamc-0.0.50' Making check in src make[2]: Entering directory '/build/bambamc-0.0.50/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/bambamc-0.0.50/src' make[2]: Entering directory '/build/bambamc-0.0.50' make[2]: Leaving directory '/build/bambamc-0.0.50' make[1]: Leaving directory '/build/bambamc-0.0.50' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep dh_auto_install make -j1 install DESTDIR=/build/bambamc-0.0.50/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/bambamc-0.0.50' Making install in src make[2]: Entering directory '/build/bambamc-0.0.50/src' make[3]: Entering directory '/build/bambamc-0.0.50/src' /bin/mkdir -p '/build/bambamc-0.0.50/debian/tmp/usr/lib/x86_64-linux-gnu' /bin/bash ../libtool --mode=install /usr/bin/install -c libbambamc.la '/build/bambamc-0.0.50/debian/tmp/usr/lib/x86_64-linux-gnu' libtool: install: /usr/bin/install -c .libs/libbambamc.so.0.0.50 /build/bambamc-0.0.50/debian/tmp/usr/lib/x86_64-linux-gnu/libbambamc.so.0.0.50 libtool: install: (cd /build/bambamc-0.0.50/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libbambamc.so.0.0.50 libbambamc.so.0 || { rm -f libbambamc.so.0 && ln -s libbambamc.so.0.0.50 libbambamc.so.0; }; }) libtool: install: (cd /build/bambamc-0.0.50/debian/tmp/usr/lib/x86_64-linux-gnu && { ln -s -f libbambamc.so.0.0.50 libbambamc.so || { rm -f libbambamc.so && ln -s libbambamc.so.0.0.50 libbambamc.so; }; }) libtool: install: /usr/bin/install -c .libs/libbambamc.lai /build/bambamc-0.0.50/debian/tmp/usr/lib/x86_64-linux-gnu/libbambamc.la libtool: install: /usr/bin/install -c .libs/libbambamc.a /build/bambamc-0.0.50/debian/tmp/usr/lib/x86_64-linux-gnu/libbambamc.a libtool: install: chmod 644 /build/bambamc-0.0.50/debian/tmp/usr/lib/x86_64-linux-gnu/libbambamc.a libtool: install: ranlib /build/bambamc-0.0.50/debian/tmp/usr/lib/x86_64-linux-gnu/libbambamc.a libtool: warning: remember to run 'libtool --finish /usr/lib/x86_64-linux-gnu' /bin/mkdir -p '/build/bambamc-0.0.50/debian/tmp/usr/include/bambamc' /usr/bin/install -c -m 644 bambamc/BamBam_BamAlignmentPut.h bambamc/BamBam_BamFlagBase.h bambamc/BamBam_FormatAlignment.h bambamc/BamBam_BamCollationHashEntry.h bambamc/BamBam_FormatNumber.h bambamc/BamBam_BamCollationHash.h bambamc/BamBam_BamHeaderInfo.h bambamc/BamBam_GzipReader.h bambamc/BamBam_BamCollationOutputVector.h bambamc/BamBam_BamSingleAlignment.h bambamc/BamBam_Hash.h bambamc/BamBam_BamCollationTempFileGenerator.h bambamc/BamBam_LineParsing.h bambamc/BamBam_BamCollationVector.h bambamc/BamBam_BamWriter.h bambamc/BamBam_List.h bambamc/BamBam_BamCollator.h bambamc/BamBam_CharBuffer.h bambamc/BamBam_ListNode.h bambamc/BamBam_BamCollatorInterface.h bambamc/BamBam_Chromosome.h bambamc/BamBam_MergeHeapEntry.h bambamc/BamBam_BamFileDecoder.h bambamc/BamBam_CollatorState.h bambamc/BamBam_Unused.h bambamc/BamBam_BamFileHeader.h bambamc/BamBam_FastQRead.h bambamc/BamBam_Config.h bambamc/BamBam_GzipWriter.h bambamc/BamBam_GzipFileDecoder.h bambamc/BamBam_BgzfCompressor.h bambamc/BamBam_LineBuffer.h bambamc/BamBam_SamInfo.h bambamc/BamBam_SamFileDecoder.h bambamc/BamBam_SamBamFileDecoder.h bambamc/BamBam_StrDup.h '/build/bambamc-0.0.50/debian/tmp/usr/include/bambamc' make[3]: Leaving directory '/build/bambamc-0.0.50/src' make[2]: Leaving directory '/build/bambamc-0.0.50/src' make[2]: Entering directory '/build/bambamc-0.0.50' make[3]: Entering directory '/build/bambamc-0.0.50' make[3]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/bambamc-0.0.50/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 bambamc.pc '/build/bambamc-0.0.50/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig' make[3]: Leaving directory '/build/bambamc-0.0.50' make[2]: Leaving directory '/build/bambamc-0.0.50' make[1]: Leaving directory '/build/bambamc-0.0.50' debian/rules override_dh_install make[1]: Entering directory '/build/bambamc-0.0.50' d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*/lib*.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libbambamc-dev/usr/lib/x86_64-linux-gnu install -d -m 755 debian/libbambamc0/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbambamc.a debian/libbambamc-dev/usr/lib/x86_64-linux-gnu mv debian/tmp/usr/lib/x86_64-linux-gnu/libbambamc.so debian/libbambamc-dev/usr/lib/x86_64-linux-gnu mv /build/bambamc-0.0.50/debian/tmp/usr/lib/x86_64-linux-gnu/libbambamc.so.0 debian/libbambamc0/usr/lib/x86_64-linux-gnu mv /build/bambamc-0.0.50/debian/tmp/usr/lib/x86_64-linux-gnu/libbambamc.so.0.0.50 debian/libbambamc0/usr/lib/x86_64-linux-gnu PKGDEV=libbambamc-dev PKGSHL=libbambamc0 install -d -m 755 debian/libbambamc-dev/usr/include mv debian/tmp/usr/include/bambamc debian/libbambamc-dev/usr/include dh_install make[1]: Leaving directory '/build/bambamc-0.0.50' dh_installdocs dh_installchangelogs dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package libbambamc-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libbambamc-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'libbambamc0-dbgsym' in '../libbambamc0-dbgsym_0.0.50-3_amd64.deb'. dpkg-deb: building package 'libbambamc0' in '../libbambamc0_0.0.50-3_amd64.deb'. dpkg-deb: building package 'libbambamc-dev' in '../libbambamc-dev_0.0.50-3_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../bambamc_0.0.50-3_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/55454 and its subdirectories I: Current time: Wed Jan 19 22:01:43 -12 2022 I: pbuilder-time-stamp: 1642672903 Fri Dec 18 03:38:40 UTC 2020 I: 1st build successful. Starting 2nd build on remote node ionos1-amd64.debian.net. Fri Dec 18 03:38:40 UTC 2020 I: Preparing to do remote build '2' on ionos1-amd64.debian.net. Fri Dec 18 03:39:28 UTC 2020 I: Deleting $TMPDIR on ionos1-amd64.debian.net. Fri Dec 18 03:39:28 UTC 2020 I: bambamc_0.0.50-3_amd64.changes: Format: 1.8 Date: Tue, 03 Jul 2018 11:43:29 +0200 Source: bambamc Binary: libbambamc-dev libbambamc0 libbambamc0-dbgsym Architecture: amd64 Version: 0.0.50-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libbambamc-dev - Development files for reading and writing BAM (genome alignment) libbambamc0 - Runtime library for reading and writing BAM (genome alignment) fi Changes: bambamc (0.0.50-3) unstable; urgency=medium . * It was agreed that maintainer address will NOT be changed - revert Checksums-Sha1: c0a4fdc727df9f22d6aaa3db8ffb0597ee5fa3fa 5446 bambamc_0.0.50-3_amd64.buildinfo 4ff62b34a48c385552a49ccba5df9c6486c7c447 50568 libbambamc-dev_0.0.50-3_amd64.deb 64d05f8de1122f52e890ac70364ce83de214856b 126292 libbambamc0-dbgsym_0.0.50-3_amd64.deb b69a9b840517dd8bd22479c9a0b6b1e39e62e173 37424 libbambamc0_0.0.50-3_amd64.deb Checksums-Sha256: bedfd0e2006ac17281a35aecd3a0bd8d9d597147bc39685203c07917884db5e6 5446 bambamc_0.0.50-3_amd64.buildinfo 9ddfd270c2897cae6dc5c0474f586d9b65c3a8457366d91ff6c4af5047af12ba 50568 libbambamc-dev_0.0.50-3_amd64.deb 542a882873d0806f09edaad8a2adf02c4f94276e73b9d396cf482fbb6003d3dc 126292 libbambamc0-dbgsym_0.0.50-3_amd64.deb f221aa834af62a8a47f2df73bed25ba85c31c1f6acb6daca73d1b4df8ddbc843 37424 libbambamc0_0.0.50-3_amd64.deb Files: 74ca4cf4d2a4410bf5228424dcd0366c 5446 science optional bambamc_0.0.50-3_amd64.buildinfo f4c3591bc71e83cdb493f9507b5b60f5 50568 libdevel optional libbambamc-dev_0.0.50-3_amd64.deb 7598321db52a052fa4f84afabd2c411e 126292 debug optional libbambamc0-dbgsym_0.0.50-3_amd64.deb b7c56fdcf05db0f8dd4332d4d250b440 37424 libs optional libbambamc0_0.0.50-3_amd64.deb Fri Dec 18 03:39:29 UTC 2020 I: diffoscope 162 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.X93XXnvnS3/bambamc_0.0.50-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.X93XXnvnS3/bambamc_0.0.50-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.X93XXnvnS3/bambamc_0.0.50-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.X93XXnvnS3/b1/bambamc_0.0.50-3_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.X93XXnvnS3/b2/bambamc_0.0.50-3_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.320s) 0.320s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.026s) 0.026s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Fri Dec 18 03:39:31 UTC 2020 I: diffoscope 162 found no differences in the changes files, and a .buildinfo file also exists. Fri Dec 18 03:39:31 UTC 2020 I: bambamc from buster built successfully and reproducibly on amd64. Fri Dec 18 03:39:33 UTC 2020 I: Submitting .buildinfo files to external archives: Fri Dec 18 03:39:33 UTC 2020 I: Submitting 8.0K b1/bambamc_0.0.50-3_amd64.buildinfo.asc Fri Dec 18 03:39:33 UTC 2020 I: Submitting 8.0K b2/bambamc_0.0.50-3_amd64.buildinfo.asc Fri Dec 18 03:39:34 UTC 2020 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Dec 18 03:39:34 UTC 2020 I: Done submitting .buildinfo files. Fri Dec 18 03:39:34 UTC 2020 I: Removing signed bambamc_0.0.50-3_amd64.buildinfo.asc files: removed './b1/bambamc_0.0.50-3_amd64.buildinfo.asc' removed './b2/bambamc_0.0.50-3_amd64.buildinfo.asc'