Mon Nov 29 06:52:20 UTC 2021 I: starting to build bali-phy/buster/amd64 on jenkins on '2021-11-29 06:52' Mon Nov 29 06:52:20 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_23/50592/console.log Mon Nov 29 06:52:20 UTC 2021 I: Downloading source for buster/bali-phy=3.4+dfsg-1 --2021-11-29 06:52:21-- http://deb.debian.org/debian/pool/main/b/bali-phy/bali-phy_3.4%2bdfsg-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2185 (2.1K) Saving to: ‘bali-phy_3.4+dfsg-1.dsc’ 0K .. 100% 1.14M=0.002s 2021-11-29 06:52:21 (1.14 MB/s) - ‘bali-phy_3.4+dfsg-1.dsc’ saved [2185/2185] Mon Nov 29 06:52:21 UTC 2021 I: bali-phy_3.4+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: bali-phy Binary: bali-phy Architecture: any Version: 3.4+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Benjamin Redelings Homepage: http://www.bali-phy.org Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/bali-phy Vcs-Git: https://salsa.debian.org/med-team/bali-phy.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11), meson (>= 0.45), libcairo2-dev, libeigen3-dev, nlohmann-json-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev Package-List: bali-phy deb science optional arch=any Checksums-Sha1: 9cf0a3043d2a177623d09ff3710bf5990843e1d9 1300720 bali-phy_3.4+dfsg.orig.tar.xz 96a35574b0ce6fad9a3a87257fd2e233afff0ba2 3000 bali-phy_3.4+dfsg-1.debian.tar.xz Checksums-Sha256: 824e5bdb77681dba22421a1d893aed9162ba8831959be36d8119ff7e03ffd8d9 1300720 bali-phy_3.4+dfsg.orig.tar.xz 5c7d745b2bf451d083dbd84735dd1c883171002d587c77b89ee1b8afd2223119 3000 bali-phy_3.4+dfsg-1.debian.tar.xz Files: d533344b4887a2456d77f629d9f490d1 1300720 bali-phy_3.4+dfsg.orig.tar.xz 462eb2e44d951e3c5dd199803688a6c6 3000 bali-phy_3.4+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlwTiDgOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtGxuw/+ILLd/WEpnymQIVMIIDB0v8ju7ancpjsTJAHs h7KTCwPZ+K7/39dP1nZZhJCCoKuvv3bI58yLncm5DnI+cDZ66rdJl0FuTB5pxr+w jL2boAcSc4D2qtFcLL3bANXXqGvVxcRFrVBW06qz1+oG/J1X1BR80mhMDj82vzYq f5/ofx6H2Up8b5MUpGEnUSDuM+xMp0eCAp2SOq4+zo5lqO8rfv643XCddPCAWYf7 43FNWj+FroWucNdgAFTX8829TxkB4yMAeFTQ6CuKyfS2chRuJzRKdX3RTIsA3piQ oPMXvyLWNzfW/+A8se5+oRV0So19xuW3KzIBX2Tf2g/Z55zSKTlq60RXDdp5bUfs x9RSCr3ONUZFOhrd3WJMMSStdyigu9XuRZxi+af73W/EESjesEhhMTtnyDts90Tj GsnpdxKMCApry/jgv018xYKtl1M1GyvnsFqbEYT0P/ByShjADtsEH8pdw/C4x7GK ojt7oFSQ0YMcrqcNCCMGQnrFOd4cRPyfxzuxufzxXh2scDtB6rR9hMdrblhyQPeg pyuOc6I5mOZgxxZwimwhevYuier145xPcD2vcT51HvRFve6Eoca7qwpWJ1tMFQBx XMJDIKfH4KsSgctOR4fBq9UaKpNrCK21WhN8XDqKXYOHjZt5kYbFjnZii/ri6Jux mYOaliU= =mpWP -----END PGP SIGNATURE----- Mon Nov 29 06:52:21 UTC 2021 I: Checking whether the package is not for us Mon Nov 29 06:52:21 UTC 2021 I: Starting 1st build on remote node ionos11-amd64.debian.net. Mon Nov 29 06:52:21 UTC 2021 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Mon Nov 29 06:59:21 UTC 2021 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 28 18:52:22 -12 2021 I: pbuilder-time-stamp: 1638168742 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [bali-phy_3.4+dfsg-1.dsc] I: copying [./bali-phy_3.4+dfsg.orig.tar.xz] I: copying [./bali-phy_3.4+dfsg-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Thu Dec 13 22:38:48 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./bali-phy_3.4+dfsg-1.dsc dpkg-source: info: extracting bali-phy in bali-phy-3.4+dfsg dpkg-source: info: unpacking bali-phy_3.4+dfsg.orig.tar.xz dpkg-source: info: unpacking bali-phy_3.4+dfsg-1.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4113185/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='6eed08e79f7d4e94a05321d2c6e20171' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4113185' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.YZGQvHx8qU/pbuilderrc_k4F2 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.YZGQvHx8qU/b1 --logfile b1/build.log bali-phy_3.4+dfsg-1.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 5.10.0-9-amd64 #1 SMP Debian 5.10.70-1 (2021-09-30) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Nov 7 09:58 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/4113185/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11), meson (>= 0.45), libcairo2-dev, libeigen3-dev, nlohmann-json-dev, pandoc, libboost-dev, libboost-program-options-dev, libboost-random-dev, libboost-system-dev, libboost-filesystem-dev, libboost-chrono-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on meson (>= 0.45); however: Package meson is not installed. pbuilder-satisfydepends-dummy depends on libcairo2-dev; however: Package libcairo2-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. pbuilder-satisfydepends-dummy depends on nlohmann-json-dev; however: Package nlohmann-json-dev is not installed. pbuilder-satisfydepends-dummy depends on pandoc; however: Package pandoc is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-random-dev; however: Package libboost-random-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-chrono-dev; however: Package libboost-chrono-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdmainutils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblkid-dev{a} libboost-chrono-dev{a} libboost-chrono1.67-dev{a} libboost-chrono1.67.0{a} libboost-dev{a} libboost-filesystem-dev{a} libboost-filesystem1.67-dev{a} libboost-filesystem1.67.0{a} libboost-program-options-dev{a} libboost-program-options1.67-dev{a} libboost-program-options1.67.0{a} libboost-random-dev{a} libboost-random1.67-dev{a} libboost-random1.67.0{a} libboost-system-dev{a} libboost-system1.67-dev{a} libboost1.67-dev{a} libbsd0{a} libcairo-gobject2{a} libcairo-script-interpreter2{a} libcairo2{a} libcairo2-dev{a} libcroco3{a} libeigen3-dev{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libffi-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfontconfig1-dev{a} libfreetype6{a} libfreetype6-dev{a} libglib2.0-0{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libice-dev{a} libice6{a} libicu63{a} liblua5.1-0{a} liblzo2-2{a} libmagic-mgc{a} libmagic1{a} libmount-dev{a} libmpdec2{a} libncurses6{a} libpcre16-3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpixman-1-dev{a} libpng-dev{a} libpng16-16{a} libpthread-stubs0-dev{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline7{a} libselinux1-dev{a} libsepol1-dev{a} libsigsegv2{a} libsm-dev{a} libsm6{a} libssl1.1{a} libtool{a} libuchardet0{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb-render0{a} libxcb-render0-dev{a} libxcb-shm0{a} libxcb-shm0-dev{a} libxcb1{a} libxcb1-dev{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxml2{a} libxrender-dev{a} libxrender1{a} libyaml-0-2{a} lsb-base{a} m4{a} man-db{a} meson{a} mime-support{a} ninja-build{a} nlohmann-json-dev{a} pandoc{a} pandoc-data{a} pkg-config{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3.7{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} ucf{a} uuid-dev{a} x11-common{a} x11proto-core-dev{a} x11proto-dev{a} x11proto-xext-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libgpm2 libltdl-dev libmail-sendmail-perl libpng-tools lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 135 newly installed, 0 to remove and 0 not upgraded. Need to get 70.3 MB of archives. After unpacking 448 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u7 [1539 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 uuid-dev amd64 2.33.1-0.1 [93.6 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 libblkid-dev amd64 2.33.1-0.1 [225 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libboost1.67-dev amd64 1.67.0-13+deb10u1 [8388 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 libboost-chrono1.67.0 amd64 1.67.0-13+deb10u1 [234 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 libboost-chrono1.67-dev amd64 1.67.0-13+deb10u1 [236 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 libboost-chrono-dev amd64 1.67.0.1 [4268 B] Get: 56 http://deb.debian.org/debian buster/main amd64 libboost-dev amd64 1.67.0.1 [3864 B] Get: 57 http://deb.debian.org/debian buster/main amd64 libboost-filesystem1.67.0 amd64 1.67.0-13+deb10u1 [261 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 libboost-system1.67-dev amd64 1.67.0-13+deb10u1 [231 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 libboost-filesystem1.67-dev amd64 1.67.0-13+deb10u1 [269 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 libboost-filesystem-dev amd64 1.67.0.1 [3684 B] Get: 61 http://deb.debian.org/debian buster/main amd64 libboost-program-options1.67.0 amd64 1.67.0-13+deb10u1 [357 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 libboost-program-options1.67-dev amd64 1.67.0-13+deb10u1 [385 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 libboost-program-options-dev amd64 1.67.0.1 [3656 B] Get: 64 http://deb.debian.org/debian buster/main amd64 libboost-random1.67.0 amd64 1.67.0-13+deb10u1 [233 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 libboost-random1.67-dev amd64 1.67.0-13+deb10u1 [232 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 libboost-random-dev amd64 1.67.0.1 [3648 B] Get: 67 http://deb.debian.org/debian buster/main amd64 libboost-system-dev amd64 1.67.0.1 [3788 B] Get: 68 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u2 [380 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get: 71 http://deb.debian.org/debian buster/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get: 78 http://deb.debian.org/debian buster/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get: 80 http://deb.debian.org/debian buster/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get: 81 http://deb.debian.org/debian buster/main amd64 libcairo2 amd64 1.16.0-4+deb10u1 [688 kB] Get: 82 http://deb.debian.org/debian buster/main amd64 libcairo-gobject2 amd64 1.16.0-4+deb10u1 [125 kB] Get: 83 http://deb.debian.org/debian buster/main amd64 liblzo2-2 amd64 2.10-0.1 [56.1 kB] Get: 84 http://deb.debian.org/debian buster/main amd64 libcairo-script-interpreter2 amd64 1.16.0-4+deb10u1 [160 kB] Get: 85 http://deb.debian.org/debian buster/main amd64 libexpat1-dev amd64 2.2.6-2+deb10u1 [153 kB] Get: 86 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1 [214 kB] Get: 87 http://deb.debian.org/debian buster/main amd64 libpng-dev amd64 1.6.36-6 [300 kB] Get: 88 http://deb.debian.org/debian buster/main amd64 libfreetype6-dev amd64 2.9.1-3+deb10u2 [544 kB] Get: 89 http://deb.debian.org/debian buster/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get: 90 http://deb.debian.org/debian buster/main amd64 libfontconfig1-dev amd64 2.13.1-2 [966 kB] Get: 91 http://deb.debian.org/debian buster/main amd64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get: 92 http://deb.debian.org/debian buster/main amd64 x11proto-dev all 2018.4-4 [251 kB] Get: 93 http://deb.debian.org/debian buster/main amd64 x11proto-core-dev all 2018.4-4 [3128 B] Get: 94 http://deb.debian.org/debian buster/main amd64 libxau-dev amd64 1:1.0.8-1+b2 [23.1 kB] Get: 95 http://deb.debian.org/debian buster/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Get: 96 http://deb.debian.org/debian buster/main amd64 xtrans-dev all 1.3.5-1 [100 kB] Get: 97 http://deb.debian.org/debian buster/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5344 B] Get: 98 http://deb.debian.org/debian buster/main amd64 libxcb1-dev amd64 1.13.1-2 [174 kB] Get: 99 http://deb.debian.org/debian buster/main amd64 libx11-dev amd64 2:1.6.7-1+deb10u2 [825 kB] Get: 100 http://deb.debian.org/debian buster/main amd64 libxrender-dev amd64 1:0.9.10-1 [40.8 kB] Get: 101 http://deb.debian.org/debian buster/main amd64 x11proto-xext-dev all 2018.4-4 [3128 B] Get: 102 http://deb.debian.org/debian buster/main amd64 libxext-dev amd64 2:1.3.3-1+b2 [107 kB] Get: 103 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get: 104 http://deb.debian.org/debian buster/main amd64 x11-common all 1:7.7+19 [251 kB] Get: 105 http://deb.debian.org/debian buster/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get: 106 http://deb.debian.org/debian buster/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 107 http://deb.debian.org/debian buster/main amd64 libice-dev amd64 2:1.0.9-2 [66.8 kB] Get: 108 http://deb.debian.org/debian buster/main amd64 libsm-dev amd64 2:1.2.3-1 [38.0 kB] Get: 109 http://deb.debian.org/debian buster/main amd64 libpixman-1-dev amd64 0.36.0-1 [554 kB] Get: 110 http://deb.debian.org/debian buster/main amd64 libxcb-render0-dev amd64 1.13.1-2 [112 kB] Get: 111 http://deb.debian.org/debian buster/main amd64 libxcb-shm0-dev amd64 1.13.1-2 [100 kB] Get: 112 http://deb.debian.org/debian buster/main amd64 libffi-dev amd64 3.2.1-9 [156 kB] Get: 113 http://deb.debian.org/debian buster/main amd64 libglib2.0-data all 2.58.3-2+deb10u3 [1111 kB] Get: 114 http://deb.debian.org/debian buster/main amd64 libglib2.0-bin amd64 2.58.3-2+deb10u3 [126 kB] Get: 115 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 116 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get: 117 http://deb.debian.org/debian buster/main amd64 libglib2.0-dev-bin amd64 2.58.3-2+deb10u3 [158 kB] Get: 118 http://deb.debian.org/debian buster/main amd64 libmount-dev amd64 2.33.1-0.1 [232 kB] Get: 119 http://deb.debian.org/debian buster/main amd64 libpcre16-3 amd64 2:8.39-12 [259 kB] Get: 120 http://deb.debian.org/debian buster/main amd64 libpcre32-3 amd64 2:8.39-12 [250 kB] Get: 121 http://deb.debian.org/debian buster/main amd64 libpcrecpp0v5 amd64 2:8.39-12 [152 kB] Get: 122 http://deb.debian.org/debian buster/main amd64 libpcre3-dev amd64 2:8.39-12 [650 kB] Get: 123 http://deb.debian.org/debian buster/main amd64 libsepol1-dev amd64 2.8-1 [338 kB] Get: 124 http://deb.debian.org/debian buster/main amd64 libselinux1-dev amd64 2.8-1+b1 [169 kB] Get: 125 http://deb.debian.org/debian buster/main amd64 libglib2.0-dev amd64 2.58.3-2+deb10u3 [1484 kB] Get: 126 http://deb.debian.org/debian buster/main amd64 libcairo2-dev amd64 1.16.0-4+deb10u1 [734 kB] Get: 127 http://deb.debian.org/debian buster/main amd64 libeigen3-dev all 3.3.7-1 [850 kB] Get: 128 http://deb.debian.org/debian buster/main amd64 liblua5.1-0 amd64 5.1.5-8.1+b2 [111 kB] Get: 129 http://deb.debian.org/debian buster/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get: 130 http://deb.debian.org/debian buster/main amd64 ninja-build amd64 1.8.2-1 [93.6 kB] Get: 131 http://deb.debian.org/debian buster/main amd64 python3-pkg-resources all 40.8.0-1 [153 kB] Get: 132 http://deb.debian.org/debian buster/main amd64 meson all 0.49.2-1 [281 kB] Get: 133 http://deb.debian.org/debian buster/main amd64 nlohmann-json-dev all 2.1.1-1.1 [395 kB] Get: 134 http://deb.debian.org/debian buster/main amd64 pandoc-data all 2.2.1-3 [329 kB] Get: 135 http://deb.debian.org/debian buster/main amd64 pandoc amd64 2.2.1-3+b2 [14.7 MB] Fetched 70.3 MB in 2s (43.8 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../0-libbsd0_0.9.1-2+deb10u1_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2+deb10u1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../1-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20090 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.7.3-1_amd64.deb ... Unpacking python3-minimal (3.7.3-1) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.62_all.deb ... Unpacking mime-support (3.62) ... Selecting previously unselected package libmpdec2:amd64. Preparing to unpack .../2-libmpdec2_2.4.2-2_amd64.deb ... Unpacking libmpdec2:amd64 (2.4.2-2) ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20551 files and directories currently installed.) Preparing to unpack .../000-python3_3.7.3-1_amd64.deb ... Unpacking python3 (3.7.3-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4+deb10u2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../003-libmagic1_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4+deb10u2) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.35-4+deb10u2_amd64.deb ... Unpacking file (1:5.35-4+deb10u2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package ucf. Preparing to unpack .../006-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../007-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../008-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... 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I: Building the package I: Running cd /build/bali-phy-3.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../bali-phy_3.4+dfsg-1_source.changes dpkg-buildpackage: info: source package bali-phy dpkg-buildpackage: info: source version 3.4+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Benjamin Redelings dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean --buildsystem=meson dh_auto_clean -O--buildsystem=meson dh_autoreconf_clean -O--buildsystem=meson dh_clean -O--buildsystem=meson debian/rules build dh build --buildsystem=meson dh_update_autotools_config -O--buildsystem=meson dh_autoreconf -O--buildsystem=meson debian/rules override_dh_auto_configure make[1]: Entering directory '/build/bali-phy-3.4+dfsg' dh_auto_configure -- -Dextra-tools=false cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 meson .. --wrap-mode=nodownload --buildtype=plain --prefix=/usr --sysconfdir=/etc --localstatedir=/var --libdir=lib/x86_64-linux-gnu --libexecdir=lib/x86_64-linux-gnu -Dextra-tools=false The Meson build system Version: 0.49.2 Source dir: /build/bali-phy-3.4+dfsg Build dir: /build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu Build type: native build Project name: bali-phy Project version: 3.4 Appending CFLAGS from environment: '-g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3' Appending LDFLAGS from environment: '-Wl,-z,relro -Wl,-z,now' Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2' Native C compiler: cc (gcc 8.3.0 "cc (Debian 8.3.0-6) 8.3.0") Appending CXXFLAGS from environment: '-g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3' Appending LDFLAGS from environment: '-Wl,-z,relro -Wl,-z,now' Appending CPPFLAGS from environment: '-Wdate-time -D_FORTIFY_SOURCE=2' Native C++ compiler: c++ (gcc 8.3.0 "c++ (Debian 8.3.0-6) 8.3.0") Build machine cpu family: x86_64 Build machine cpu: x86_64 Has header "sys/resource.h" : YES Has header "fenv.h" : YES Checking for function "log2" : YES Checking for function "feenableexcept" : YES Configuring config.h using configuration Compiler for C++ supports arguments -Wno-maybe-uninitialized -Wmaybe-uninitialized: YES Found pkg-config: /usr/bin/pkg-config (0.29) Dependency cairo found: YES 1.16.0 Dependency Boost (program_options, random, system, filesystem, chrono) found: YES 1.67 Dependency eigen3 found: YES 3.3.7 Has header "nlohmann/json.hpp" : YES Library dl found: YES Program pandoc found: YES (/usr/bin/pandoc) Program /build/bali-phy-3.4+dfsg/tests/run-tests.py found: YES (/build/bali-phy-3.4+dfsg/tests/run-tests.py) Build targets in project: 78 Option buildtype is: plain [default: release] Found ninja-1.8.2 at /usr/bin/ninja make[1]: Leaving directory '/build/bali-phy-3.4+dfsg' dh_auto_build -O--buildsystem=meson cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 ninja -j15 -v [1/256] /usr/bin/meson --internal vcstagger ../src/git-version.h.in src/git-version.h '' /build/bali-phy-3.4+dfsg/src @git_message@ '(.*)' /build/bali-phy-3.4+dfsg/src/git log -n1 '--date=format:%b %d %Y %k:%M:%S' '--pretty=format:[%D commit %h] (%cd)' [2/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/rng.cc.o' -MF 'src/25a6634@@bali-phy@sta/rng.cc.o.d' -o 'src/25a6634@@bali-phy@sta/rng.cc.o' -c ../src/rng.cc [3/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/sequence_sequence.cc.o' -MF 'src/25a6634@@bali-phy@sta/sequence_sequence.cc.o.d' -o 'src/25a6634@@bali-phy@sta/sequence_sequence.cc.o' -c ../src/sequence/sequence.cc [4/256] c++ -Isrc/25a6634@@libsums@sta -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -fno-fast-math -MD -MQ 'src/25a6634@@libsums@sta/computation_machine_sums.cc.o' -MF 'src/25a6634@@libsums@sta/computation_machine_sums.cc.o.d' -o 'src/25a6634@@libsums@sta/computation_machine_sums.cc.o' -c ../src/computation/machine/sums.cc [5/256] rm -f src/liblibsums.a && gcc-ar csrD src/liblibsums.a 'src/25a6634@@libsums@sta/computation_machine_sums.cc.o' [6/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/tools_statistics.cc.o' -MF 'src/25a6634@@bali-phy@sta/tools_statistics.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tools_statistics.cc.o' -c ../src/tools/statistics.cc [7/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/util.cc.o' -MF 'src/25a6634@@bali-phy@sta/util.cc.o.d' -o 'src/25a6634@@bali-phy@sta/util.cc.o' -c ../src/util.cc [8/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/sequence_sequence-format.cc.o' -MF 'src/25a6634@@bali-phy@sta/sequence_sequence-format.cc.o.d' -o 'src/25a6634@@bali-phy@sta/sequence_sequence-format.cc.o' -c ../src/sequence/sequence-format.cc [9/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/io.cc.o' -MF 'src/25a6634@@bali-phy@sta/io.cc.o.d' -o 'src/25a6634@@bali-phy@sta/io.cc.o' -c ../src/io.cc [10/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/tree_sequencetree.cc.o' -MF 'src/25a6634@@bali-phy@sta/tree_sequencetree.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tree_sequencetree.cc.o' -c ../src/tree/sequencetree.cc [11/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/tree_tree-util.cc.o' -MF 'src/25a6634@@bali-phy@sta/tree_tree-util.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tree_tree-util.cc.o' -c ../src/tree/tree-util.cc [12/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/util-random.cc.o' -MF 'src/25a6634@@bali-phy@sta/util-random.cc.o.d' -o 'src/25a6634@@bali-phy@sta/util-random.cc.o' -c ../src/util-random.cc [13/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/alignment_alignment-random.cc.o' -MF 'src/25a6634@@bali-phy@sta/alignment_alignment-random.cc.o.d' -o 'src/25a6634@@bali-phy@sta/alignment_alignment-random.cc.o' 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-Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/tools_consensus-tree.cc.o' -MF 'src/25a6634@@bali-phy@sta/tools_consensus-tree.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tools_consensus-tree.cc.o' -c ../src/tools/consensus-tree.cc [41/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/probability_choose.cc.o' -MF 'src/25a6634@@bali-phy@exe/probability_choose.cc.o.d' -o 'src/25a6634@@bali-phy@exe/probability_choose.cc.o' -c ../src/probability/choose.cc [42/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/prior.cc.o' -MF 'src/25a6634@@bali-phy@exe/prior.cc.o.d' -o 'src/25a6634@@bali-phy@exe/prior.cc.o' -c ../src/prior.cc [43/256] c++ -Isrc/25a6634@@bali-phy@sta -Isrc -I../src -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/25a6634@@bali-phy@sta/tools_inverse.cc.o' -MF 'src/25a6634@@bali-phy@sta/tools_inverse.cc.o.d' -o 'src/25a6634@@bali-phy@sta/tools_inverse.cc.o' -c ../src/tools/inverse.cc [44/256] rm -f src/libbali-phy.a && gcc-ar csrD src/libbali-phy.a 'src/25a6634@@bali-phy@sta/io.cc.o' 'src/25a6634@@bali-phy@sta/util.cc.o' 'src/25a6634@@bali-phy@sta/tree_sequencetree.cc.o' 'src/25a6634@@bali-phy@sta/tree_tree.cc.o' 'src/25a6634@@bali-phy@sta/sequence_alphabet.cc.o' 'src/25a6634@@bali-phy@sta/sequence_sequence.cc.o' 'src/25a6634@@bali-phy@sta/tree_tree-util.cc.o' 'src/25a6634@@bali-phy@sta/tools_read-trees.cc.o' 'src/25a6634@@bali-phy@sta/sequence_sequence-format.cc.o' 'src/25a6634@@bali-phy@sta/alignment_alignment-util.cc.o' 'src/25a6634@@bali-phy@sta/rng.cc.o' 'src/25a6634@@bali-phy@sta/alignment_load.cc.o' 'src/25a6634@@bali-phy@sta/alignment_alignment.cc.o' 'src/25a6634@@bali-phy@sta/tools_statistics.cc.o' 'src/25a6634@@bali-phy@sta/tools_partition.cc.o' 'src/25a6634@@bali-phy@sta/tools_tree-dist.cc.o' 'src/25a6634@@bali-phy@sta/alignment_alignment-random.cc.o' 'src/25a6634@@bali-phy@sta/setup.cc.o' 'src/25a6634@@bali-phy@sta/tree_randomtree.cc.o' 'src/25a6634@@bali-phy@sta/util-random.cc.o' 'src/25a6634@@bali-phy@sta/tools_parsimony.cc.o' 'src/25a6634@@bali-phy@sta/alignment_index-matrix.cc.o' 'src/25a6634@@bali-phy@sta/tools_mctree.cc.o' 'src/25a6634@@bali-phy@sta/tools_stats-table.cc.o' 'src/25a6634@@bali-phy@sta/tools_findroot.cc.o' 'src/25a6634@@bali-phy@sta/tools_optimize.cc.o' 'src/25a6634@@bali-phy@sta/tools_distance-report.cc.o' 'src/25a6634@@bali-phy@sta/n_indels.cc.o' 'src/25a6634@@bali-phy@sta/tools_inverse.cc.o' 'src/25a6634@@bali-phy@sta/tools_joint-A-T.cc.o' 'src/25a6634@@bali-phy@sta/tools_distance-methods.cc.o' 'src/25a6634@@bali-phy@sta/tools_consensus-tree.cc.o' [45/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_moves.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_moves.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_moves.cc.o' -c ../src/mcmc/moves.cc [46/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/dp_dp-engine.cc.o' -MF 'src/25a6634@@bali-phy@exe/dp_dp-engine.cc.o.d' -o 'src/25a6634@@bali-phy@exe/dp_dp-engine.cc.o' -c ../src/dp/dp-engine.cc [47/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/parser_desugar.cc.o' -MF 'src/25a6634@@bali-phy@exe/parser_desugar.cc.o.d' -o 'src/25a6634@@bali-phy@exe/parser_desugar.cc.o' -c ../src/parser/desugar.cc [48/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/util_text.cc.o' -MF 'src/25a6634@@bali-phy@exe/util_text.cc.o.d' -o 'src/25a6634@@bali-phy@exe/util_text.cc.o' -c ../src/util/text.cc [49/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/util_ptree.cc.o' -MF 'src/25a6634@@bali-phy@exe/util_ptree.cc.o.d' -o 'src/25a6634@@bali-phy@exe/util_ptree.cc.o' -c ../src/util/ptree.cc [50/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/parser_desugar-case.cc.o' -MF 'src/25a6634@@bali-phy@exe/parser_desugar-case.cc.o.d' -o 'src/25a6634@@bali-phy@exe/parser_desugar-case.cc.o' -c ../src/parser/desugar-case.cc [51/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o' -c ../src/mcmc/sample-branch-lengths.cc [52/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/substitution_substitution.cc.o' -MF 'src/25a6634@@bali-phy@exe/substitution_substitution.cc.o.d' -o 'src/25a6634@@bali-phy@exe/substitution_substitution.cc.o' -c ../src/substitution/substitution.cc [53/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 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-I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/parser_parser.cc.o' -MF 'src/25a6634@@bali-phy@exe/parser_parser.cc.o.d' -o 'src/25a6634@@bali-phy@exe/parser_parser.cc.o' -c ../src/parser/parser.cc [56/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 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-Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/models_TreeInterface.cc.o' -MF 'src/25a6634@@bali-phy@exe/models_TreeInterface.cc.o.d' -o 'src/25a6634@@bali-phy@exe/models_TreeInterface.cc.o' -c ../src/models/TreeInterface.cc [59/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 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-Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/dp_5way.cc.o' -MF 'src/25a6634@@bali-phy@exe/dp_5way.cc.o.d' -o 'src/25a6634@@bali-phy@exe/dp_5way.cc.o' -c ../src/dp/5way.cc [63/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/imodel_imodel.cc.o' -MF 'src/25a6634@@bali-phy@exe/imodel_imodel.cc.o.d' 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-Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/dp_2way.cc.o' -MF 'src/25a6634@@bali-phy@exe/dp_2way.cc.o.d' -o 'src/25a6634@@bali-phy@exe/dp_2way.cc.o' -c ../src/dp/2way.cc [66/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/myexception.cc.o' -MF 'src/25a6634@@bali-phy@exe/myexception.cc.o.d' -o 'src/25a6634@@bali-phy@exe/myexception.cc.o' -c ../src/myexception.cc [67/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_sample-topology-NNI.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_sample-topology-NNI.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_sample-topology-NNI.cc.o' -c ../src/mcmc/sample-topology-NNI.cc [68/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/math_pow2.cc.o' -MF 'src/25a6634@@bali-phy@exe/math_pow2.cc.o.d' -o 'src/25a6634@@bali-phy@exe/math_pow2.cc.o' -c ../src/math/pow2.cc [69/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/bali-phy.cc.o' -MF 'src/25a6634@@bali-phy@exe/bali-phy.cc.o.d' -o 'src/25a6634@@bali-phy@exe/bali-phy.cc.o' -c ../src/bali-phy.cc [70/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/dp_alignment-sums.cc.o' -MF 'src/25a6634@@bali-phy@exe/dp_alignment-sums.cc.o.d' -o 'src/25a6634@@bali-phy@exe/dp_alignment-sums.cc.o' -c ../src/dp/alignment-sums.cc [71/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_sample-node.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_sample-node.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_sample-node.cc.o' -c ../src/mcmc/sample-node.cc [72/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/n_indels2.cc.o' -MF 'src/25a6634@@bali-phy@exe/n_indels2.cc.o.d' -o 'src/25a6634@@bali-phy@exe/n_indels2.cc.o' -c ../src/n_indels2.cc [73/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_sample-two-nodes.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_sample-two-nodes.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_sample-two-nodes.cc.o' -c ../src/mcmc/sample-two-nodes.cc [74/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/mcmc_sample-cube.cc.o' -MF 'src/25a6634@@bali-phy@exe/mcmc_sample-cube.cc.o.d' -o 'src/25a6634@@bali-phy@exe/mcmc_sample-cube.cc.o' -c ../src/mcmc/sample-cube.cc [75/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/substitution_parsimony.cc.o' -MF 'src/25a6634@@bali-phy@exe/substitution_parsimony.cc.o.d' -o 'src/25a6634@@bali-phy@exe/substitution_parsimony.cc.o' -c ../src/substitution/parsimony.cc [76/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/monitor.cc.o' -MF 'src/25a6634@@bali-phy@exe/monitor.cc.o.d' -o 'src/25a6634@@bali-phy@exe/monitor.cc.o' -c ../src/monitor.cc ../src/monitor.cc: In function ‘void report_mem()’: ../src/monitor.cc:113:9: warning: ignoring return value of ‘int system(const char*)’, declared with attribute warn_unused_result [-Wunused-result] system(cmd.str().c_str()); ~~~~~~^~~~~~~~~~~~~~~~~~~ [77/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/timer_stack.cc.o' -MF 'src/25a6634@@bali-phy@exe/timer_stack.cc.o.d' -o 'src/25a6634@@bali-phy@exe/timer_stack.cc.o' -c ../src/timer_stack.cc [78/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/alignment_alignment-util2.cc.o' -MF 'src/25a6634@@bali-phy@exe/alignment_alignment-util2.cc.o.d' -o 'src/25a6634@@bali-phy@exe/alignment_alignment-util2.cc.o' -c ../src/alignment/alignment-util2.cc [79/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/version.cc.o' -MF 'src/25a6634@@bali-phy@exe/version.cc.o.d' -o 'src/25a6634@@bali-phy@exe/version.cc.o' -c ../src/version.cc ../src/version.cc:67:8: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] s<<__DATE__<<" "<<__TIME__; ^~~~~~~~ ../src/version.cc:67:23: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] s<<__DATE__<<" "<<__TIME__; ^~~~~~~~ [80/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time 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-I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/2382537@@Alphabet@sha/Alphabet.cc.o' -MF 'src/builtins/2382537@@Alphabet@sha/Alphabet.cc.o.d' -o 'src/builtins/2382537@@Alphabet@sha/Alphabet.cc.o' -c ../src/builtins/Alphabet.cc [142/256] c++ -Isrc/builtins/2382537@@Range@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas 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'src/builtins/2382537@@Real@sha/Real.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Real.so -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [160/256] c++ -Isrc/builtins/2382537@@Distribution@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/2382537@@Distribution@sha/Distribution.cc.o' -MF 'src/builtins/2382537@@Distribution@sha/Distribution.cc.o.d' -o 'src/builtins/2382537@@Distribution@sha/Distribution.cc.o' -c ../src/builtins/Distribution.cc [161/256] c++ -o src/builtins/Vector.so 'src/builtins/2382537@@Vector@sha/Vector.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Vector.so -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [162/256] c++ -o src/builtins/Distribution.so 'src/builtins/2382537@@Distribution@sha/Distribution.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,Distribution.so -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [163/256] c++ -Isrc/builtins/2382537@@PopGen@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/2382537@@PopGen@sha/PopGen.cc.o' -MF 'src/builtins/2382537@@PopGen@sha/PopGen.cc.o.d' -o 'src/builtins/2382537@@PopGen@sha/PopGen.cc.o' -c ../src/builtins/PopGen.cc [164/256] c++ -o src/builtins/PopGen.so 'src/builtins/2382537@@PopGen@sha/PopGen.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,PopGen.so -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [165/256] c++ -Isrc/builtins/2382537@@SModel@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/2382537@@SModel@sha/SModel.cc.o' -MF 'src/builtins/2382537@@SModel@sha/SModel.cc.o.d' -o 'src/builtins/2382537@@SModel@sha/SModel.cc.o' -c ../src/builtins/SModel.cc [166/256] c++ -Isrc/25a6634@@bali-phy@exe -Isrc -I../src -I. -I../ -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-phy@exe/computation_optimization_occurrence.cc.o' -MF 'src/25a6634@@bali-phy@exe/computation_optimization_occurrence.cc.o.d' -o 'src/25a6634@@bali-phy@exe/computation_optimization_occurrence.cc.o' -c ../src/computation/optimization/occurrence.cc [167/256] c++ -o src/builtins/SModel.so 'src/builtins/2382537@@SModel@sha/SModel.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,SModel.so -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [168/256] c++ -Isrc/25a6634@@model_P@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@model_P@exe/tools_model_P.cc.o' -MF 'src/25a6634@@model_P@exe/tools_model_P.cc.o.d' -o 'src/25a6634@@model_P@exe/tools_model_P.cc.o' -c ../src/tools/model_P.cc [169/256] c++ -o src/model_P 'src/25a6634@@model_P@exe/tools_model_P.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src [170/256] c++ -o src/bali-phy 'src/25a6634@@bali-phy@exe/dp_dp_hmm.cc.o' 'src/25a6634@@bali-phy@exe/parser_desugar.cc.o' 'src/25a6634@@bali-phy@exe/parser_desugar-case.cc.o' 'src/25a6634@@bali-phy@exe/parser_rename.cc.o' 'src/25a6634@@bali-phy@exe/parser_driver.cc.o' 'src/25a6634@@bali-phy@exe/parser_lexer.cc.o' 'src/25a6634@@bali-phy@exe/parser_parser.cc.o' 'src/25a6634@@bali-phy@exe/substitution_substitution.cc.o' 'src/25a6634@@bali-phy@exe/util_ptree.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_moves.cc.o' 'src/25a6634@@bali-phy@exe/math_exponential.cc.o' 'src/25a6634@@bali-phy@exe/math_eigenvalue.cc.o' 'src/25a6634@@bali-phy@exe/models_parameters.cc.o' 'src/25a6634@@bali-phy@exe/prior.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_mcmc.cc.o' 'src/25a6634@@bali-phy@exe/probability_choose.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_sample-branch-lengths.cc.o' 'src/25a6634@@bali-phy@exe/bali-phy.cc.o' 'src/25a6634@@bali-phy@exe/util_text.cc.o' 'src/25a6634@@bali-phy@exe/models_TreeInterface.cc.o' 'src/25a6634@@bali-phy@exe/dp_hmm.cc.o' 'src/25a6634@@bali-phy@exe/dp_dp-engine.cc.o' 'src/25a6634@@bali-phy@exe/dp_dp-array.cc.o' 'src/25a6634@@bali-phy@exe/dp_dp-matrix.cc.o' 'src/25a6634@@bali-phy@exe/dp_3way.cc.o' 'src/25a6634@@bali-phy@exe/dp_2way.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_sample-alignment.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_sample-node.cc.o' 'src/25a6634@@bali-phy@exe/imodel_imodel.cc.o' 'src/25a6634@@bali-phy@exe/dp_5way.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_sample-topology-NNI.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_sample-two-nodes.cc.o' 'src/25a6634@@bali-phy@exe/dp_dp-cube.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_sample-cube.cc.o' 'src/25a6634@@bali-phy@exe/models_setup.cc.o' 'src/25a6634@@bali-phy@exe/startup_help.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_sample-topology-SPR.cc.o' 'src/25a6634@@bali-phy@exe/dp_alignment-sums.cc.o' 'src/25a6634@@bali-phy@exe/probability_probability.cc.o' 'src/25a6634@@bali-phy@exe/models_model.cc.o' 'src/25a6634@@bali-phy@exe/alignment_alignment-constraint.cc.o' 'src/25a6634@@bali-phy@exe/monitor.cc.o' 'src/25a6634@@bali-phy@exe/myexception.cc.o' 'src/25a6634@@bali-phy@exe/math_pow2.cc.o' 'src/25a6634@@bali-phy@exe/substitution_parsimony.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_proposals.cc.o' 'src/25a6634@@bali-phy@exe/n_indels2.cc.o' 'src/25a6634@@bali-phy@exe/alignment_alignment-util2.cc.o' 'src/25a6634@@bali-phy@exe/tools_parsimony2.cc.o' 'src/25a6634@@bali-phy@exe/version.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_slice-sampling.cc.o' 'src/25a6634@@bali-phy@exe/timer_stack.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_setup.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_logger.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_AIS.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_operator.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_expression.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_constructor.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_expression_ref.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_AST_node.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_apply.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_substitute.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_indexify.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_let.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_case.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_trim.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_tuple.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_list.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_var.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_lambda.cc.o' 'src/25a6634@@bali-phy@exe/computation_machine_args.cc.o' 'src/25a6634@@bali-phy@exe/computation_machine_tokens.cc.o' 'src/25a6634@@bali-phy@exe/computation_preprocess.cc.o' 'src/25a6634@@bali-phy@exe/computation_machine_graph_register.cc.o' 'src/25a6634@@bali-phy@exe/computation_machine_show_graph.cc.o' 'src/25a6634@@bali-phy@exe/computation_module.cc.o' 'src/25a6634@@bali-phy@exe/computation_machine_evaluate.cc.o' 'src/25a6634@@bali-phy@exe/computation_machine_gc.cc.o' 'src/25a6634@@bali-phy@exe/computation_machine_reroot.cc.o' 'src/25a6634@@bali-phy@exe/computation_operations.cc.o' 'src/25a6634@@bali-phy@exe/computation_loader.cc.o' 'src/25a6634@@bali-phy@exe/computation_context.cc.o' 'src/25a6634@@bali-phy@exe/computation_closure.cc.o' 'src/25a6634@@bali-phy@exe/computation_optimization_let-float.cc.o' 'src/25a6634@@bali-phy@exe/computation_program.cc.o' 'src/25a6634@@bali-phy@exe/mcmc_sample-tri.cc.o' 'src/25a6634@@bali-phy@exe/startup_A-T-model.cc.o' 'src/25a6634@@bali-phy@exe/startup_files.cc.o' 'src/25a6634@@bali-phy@exe/startup_loggers.cc.o' 'src/25a6634@@bali-phy@exe/startup_system.cc.o' 'src/25a6634@@bali-phy@exe/startup_cmd_line.cc.o' 'src/25a6634@@bali-phy@exe/models_rules.cc.o' 'src/25a6634@@bali-phy@exe/models_parse.cc.o' 'src/25a6634@@bali-phy@exe/models_translate.cc.o' 'src/25a6634@@bali-phy@exe/models_unification.cc.o' 'src/25a6634@@bali-phy@exe/computation_optimization_simplifier.cc.o' 'src/25a6634@@bali-phy@exe/startup_paths.cc.o' 'src/25a6634@@bali-phy@exe/computation_optimization_occurrence.cc.o' 'src/25a6634@@bali-phy@exe/computation_optimization_inliner.cc.o' 'src/25a6634@@bali-phy@exe/computation_expression_bool.cc.o' -Wl,--no-undefined -Wl,--as-needed -Wl,-export-dynamic -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a src/liblibsums.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -ldl -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src [171/256] c++ -Isrc/25a6634@@stats-select@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@stats-select@exe/tools_stats-select.cc.o' -MF 'src/25a6634@@stats-select@exe/tools_stats-select.cc.o.d' -o 'src/25a6634@@stats-select@exe/tools_stats-select.cc.o' -c ../src/tools/stats-select.cc [172/256] c++ -Isrc/25a6634@@alignment-find@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-find@exe/tools_alignment-find.cc.o' -MF 'src/25a6634@@alignment-find@exe/tools_alignment-find.cc.o.d' -o 'src/25a6634@@alignment-find@exe/tools_alignment-find.cc.o' -c ../src/tools/alignment-find.cc [173/256] c++ -o src/stats-select 'src/25a6634@@stats-select@exe/tools_stats-select.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src [174/256] c++ -o src/alignment-find 'src/25a6634@@alignment-find@exe/tools_alignment-find.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src [175/256] c++ -Isrc/25a6634@@alignment-info@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-info@exe/tools_alignment-info.cc.o' -MF 'src/25a6634@@alignment-info@exe/tools_alignment-info.cc.o.d' -o 'src/25a6634@@alignment-info@exe/tools_alignment-info.cc.o' -c ../src/tools/alignment-info.cc [176/256] c++ -Isrc/25a6634@@alignment-gild@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-gild@exe/tools_alignment-gild.cc.o' -MF 'src/25a6634@@alignment-gild@exe/tools_alignment-gild.cc.o.d' -o 'src/25a6634@@alignment-gild@exe/tools_alignment-gild.cc.o' -c ../src/tools/alignment-gild.cc [177/256] c++ -Isrc/25a6634@@alignment-chop-internal@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -MF 'src/25a6634@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o.d' -o 'src/25a6634@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -c ../src/tools/alignment-chop-internal.cc [178/256] c++ -o src/alignment-info 'src/25a6634@@alignment-info@exe/tools_alignment-info.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src [179/256] c++ -Isrc/25a6634@@statreport@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@statreport@exe/tools_statreport.cc.o' -MF 'src/25a6634@@statreport@exe/tools_statreport.cc.o.d' -o 'src/25a6634@@statreport@exe/tools_statreport.cc.o' -c ../src/tools/statreport.cc [180/256] c++ -Isrc/25a6634@@alignment-consensus@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -MF 'src/25a6634@@alignment-consensus@exe/tools_alignment-consensus.cc.o.d' -o 'src/25a6634@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -c ../src/tools/alignment-consensus.cc [181/256] c++ -o src/statreport 'src/25a6634@@statreport@exe/tools_statreport.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src [182/256] c++ -o src/alignment-gild 'src/25a6634@@alignment-gild@exe/tools_alignment-gild.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src [183/256] c++ -o src/alignment-chop-internal 'src/25a6634@@alignment-chop-internal@exe/tools_alignment-chop-internal.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src [184/256] c++ -Isrc/25a6634@@alignment-indices@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-indices@exe/tools_alignment-indices.cc.o' -MF 'src/25a6634@@alignment-indices@exe/tools_alignment-indices.cc.o.d' -o 'src/25a6634@@alignment-indices@exe/tools_alignment-indices.cc.o' -c ../src/tools/alignment-indices.cc [185/256] c++ -o src/alignment-consensus 'src/25a6634@@alignment-consensus@exe/tools_alignment-consensus.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src [186/256] c++ -o src/alignment-indices 'src/25a6634@@alignment-indices@exe/tools_alignment-indices.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src [187/256] c++ -Isrc/25a6634@@alignment-translate@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-translate@exe/tools_alignment-translate.cc.o' -MF 'src/25a6634@@alignment-translate@exe/tools_alignment-translate.cc.o.d' -o 'src/25a6634@@alignment-translate@exe/tools_alignment-translate.cc.o' -c ../src/tools/alignment-translate.cc [188/256] c++ -o src/alignment-translate 'src/25a6634@@alignment-translate@exe/tools_alignment-translate.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src [189/256] c++ -Isrc/25a6634@@alignment-max@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-max@exe/tools_alignment-max.cc.o' -MF 'src/25a6634@@alignment-max@exe/tools_alignment-max.cc.o.d' -o 'src/25a6634@@alignment-max@exe/tools_alignment-max.cc.o' -c ../src/tools/alignment-max.cc [190/256] c++ -o src/alignment-max 'src/25a6634@@alignment-max@exe/tools_alignment-max.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src [191/256] c++ -Isrc/25a6634@@pickout@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@pickout@exe/tools_pickout.cc.o' -MF 'src/25a6634@@pickout@exe/tools_pickout.cc.o.d' -o 'src/25a6634@@pickout@exe/tools_pickout.cc.o' -c ../src/tools/pickout.cc [192/256] c++ -o src/pickout 'src/25a6634@@pickout@exe/tools_pickout.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src [193/256] c++ -Isrc/25a6634@@tree-mean-lengths@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -MF 'src/25a6634@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o.d' -o 'src/25a6634@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -c ../src/tools/tree-mean-lengths.cc [194/256] c++ -o src/tree-mean-lengths 'src/25a6634@@tree-mean-lengths@exe/tools_tree-mean-lengths.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src [195/256] c++ -Isrc/25a6634@@mctree-mean-lengths@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -MF 'src/25a6634@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o.d' -o 'src/25a6634@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -c ../src/tools/mctree-mean-lengths.cc [196/256] c++ -Isrc/25a6634@@alignment-draw@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-draw@exe/tools_colors.cc.o' -MF 'src/25a6634@@alignment-draw@exe/tools_colors.cc.o.d' -o 'src/25a6634@@alignment-draw@exe/tools_colors.cc.o' -c ../src/tools/colors.cc [197/256] c++ -Isrc/builtins/2382537@@SMC@sha -Isrc/builtins -I../src/builtins -Isrc/builtins/.. -I../src/builtins/.. -I/usr/include/eigen3 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MQ 'src/builtins/2382537@@SMC@sha/SMC.cc.o' -MF 'src/builtins/2382537@@SMC@sha/SMC.cc.o.d' -o 'src/builtins/2382537@@SMC@sha/SMC.cc.o' -c ../src/builtins/SMC.cc [198/256] c++ -o src/mctree-mean-lengths 'src/25a6634@@mctree-mean-lengths@exe/tools_mctree-mean-lengths.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src [199/256] c++ -o src/builtins/SMC.so 'src/builtins/2382537@@SMC@sha/SMC.cc.o' -Wl,--as-needed -shared -fPIC -Wl,--start-group -Wl,-soname,SMC.so -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group [200/256] c++ -Isrc/25a6634@@alignment-cat@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-cat@exe/tools_alignment-cat.cc.o' -MF 'src/25a6634@@alignment-cat@exe/tools_alignment-cat.cc.o.d' -o 'src/25a6634@@alignment-cat@exe/tools_alignment-cat.cc.o' -c ../src/tools/alignment-cat.cc [201/256] c++ -Isrc/25a6634@@tree-tool@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@tree-tool@exe/tools_tree-tool.cc.o' -MF 'src/25a6634@@tree-tool@exe/tools_tree-tool.cc.o.d' -o 'src/25a6634@@tree-tool@exe/tools_tree-tool.cc.o' -c ../src/tools/tree-tool.cc [202/256] /usr/bin/meson --internal exe 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-fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src [205/256] c++ -Isrc/25a6634@@trees-to-SRQ@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@trees-to-SRQ@exe/tools_trees-to-SRQ.cc.o' -MF 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-Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src [209/256] c++ -Isrc/25a6634@@alignments-diff@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 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-ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src [215/256] c++ -Isrc/25a6634@@trees-consensus@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@trees-consensus@exe/tools_trees-consensus.cc.o' -MF 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src/trees-consensus 'src/25a6634@@trees-consensus@exe/tools_trees-consensus.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src [222/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/meson-private/meson_exe_pandoc_8d9ee5ef3b92f2dcd8ac70c90d2f7849cfc71aca.dat [223/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/meson-private/meson_exe_pandoc_254861287c160fddc59ec85a6eeda2d2bcd7a034.dat [224/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/meson-private/meson_exe_pandoc_68e7fa4a885adf9bd42af2fd573068fedd87b47f.dat [225/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/meson-private/meson_exe_pandoc_c8493358ae41da57ead78b1fd2dd5aaf091b4673.dat [226/256] c++ -Isrc/25a6634@@bali-subsample@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@bali-subsample@exe/tools_subsample.cc.o' -MF 'src/25a6634@@bali-subsample@exe/tools_subsample.cc.o.d' -o 'src/25a6634@@bali-subsample@exe/tools_subsample.cc.o' -c ../src/tools/subsample.cc [227/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/meson-private/meson_exe_pandoc_4e020f8b547fdaccd0e89fa5889a6c2b1de28eb6.dat [228/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/meson-private/meson_exe_pandoc_ab33c0bdb45140d4292d3bc5afdc81ae622f1888.dat [229/256] c++ -o src/bali-subsample 'src/25a6634@@bali-subsample@exe/tools_subsample.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src [230/256] /usr/bin/meson --internal exe 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/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/meson-private/meson_exe_pandoc_439d3ac3f3f2c04935a930f03445f2f0aa1c08b1.dat [237/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/meson-private/meson_exe_pandoc_fe9003644db12af18227e14204c0a1e744e1be01.dat [238/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/meson-private/meson_exe_pandoc_44d217cb90cd03de27d70edc81be761fc3c2fb24.dat [239/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/meson-private/meson_exe_pandoc_b59243e6104711bcbdc7caeec72b114a422dd9d0.dat [240/256] c++ -Isrc/25a6634@@trees-distances@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@trees-distances@exe/tools_trees-distances.cc.o' -MF 'src/25a6634@@trees-distances@exe/tools_trees-distances.cc.o.d' -o 'src/25a6634@@trees-distances@exe/tools_trees-distances.cc.o' -c ../src/tools/trees-distances.cc [241/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/meson-private/meson_exe_pandoc_78c066b4489b7d987b874bbf844999c5bcaacbf0.dat [242/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/meson-private/meson_exe_pandoc_f8f249b010a2e3b71f7f1329b762c7a231df8728.dat [243/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/meson-private/meson_exe_pandoc_ec013510d5960c9f9ed11876ac0f4119ba8f9967.dat [244/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/meson-private/meson_exe_pandoc_8ab5ead4ca0ecefd3b73d1e6ae0ca9b3588610de.dat [245/256] c++ -o src/trees-distances 'src/25a6634@@trees-distances@exe/tools_trees-distances.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src [246/256] /usr/bin/meson --internal exe /build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/meson-private/meson_exe_pandoc_bfde57462e1f0a4e88b2487ac4f1dce4cc39d1be.dat [247/256] c++ -Isrc/25a6634@@alignment-distances@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-distances@exe/tools_alignment-distances.cc.o' -MF 'src/25a6634@@alignment-distances@exe/tools_alignment-distances.cc.o.d' -o 'src/25a6634@@alignment-distances@exe/tools_alignment-distances.cc.o' -c ../src/tools/alignment-distances.cc [248/256] c++ -Isrc/25a6634@@alignment-thin@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-thin@exe/tools_alignment-thin.cc.o' -MF 'src/25a6634@@alignment-thin@exe/tools_alignment-thin.cc.o.d' -o 'src/25a6634@@alignment-thin@exe/tools_alignment-thin.cc.o' -c ../src/tools/alignment-thin.cc [249/256] c++ -o src/alignment-distances 'src/25a6634@@alignment-distances@exe/tools_alignment-distances.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src [250/256] c++ -o src/alignment-thin 'src/25a6634@@alignment-thin@exe/tools_alignment-thin.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/:XXXXXXXXXXXXXXXX' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src [251/256] c++ -Isrc/25a6634@@alignment-draw@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@alignment-draw@exe/tools_alignment-draw.cc.o' -MF 'src/25a6634@@alignment-draw@exe/tools_alignment-draw.cc.o.d' -o 'src/25a6634@@alignment-draw@exe/tools_alignment-draw.cc.o' -c ../src/tools/alignment-draw.cc [252/256] c++ -o src/alignment-draw 'src/25a6634@@alignment-draw@exe/tools_alignment-draw.cc.o' 'src/25a6634@@alignment-draw@exe/tools_colors.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src [253/256] c++ -Isrc/25a6634@@trees-bootstrap@exe -Isrc -I../src -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' -MF 'src/25a6634@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o.d' -o 'src/25a6634@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' -c ../src/tools/trees-bootstrap.cc [254/256] c++ -o src/trees-bootstrap 'src/25a6634@@trees-bootstrap@exe/tools_trees-bootstrap.cc.o' 'src/25a6634@@trees-bootstrap@exe/tools_bootstrap.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src [255/256] c++ -Isrc/25a6634@@draw-tree@exe -Isrc -I../src -I. -I../ -I/usr/include/cairo -I/usr/include/glib-2.0 -I/usr/lib/x86_64-linux-gnu/glib-2.0/include -I/usr/include/pixman-1 -I/usr/include/uuid -I/usr/include/freetype2 -I/usr/include/libpng16 -fdiagnostics-color=always -pipe -D_FILE_OFFSET_BITS=64 -std=c++14 -DHAVE_CONFIG_H -Wall -Wextra -Wno-sign-compare -Woverloaded-virtual -Wstrict-aliasing -Wno-unknown-pragmas -Wno-maybe-uninitialized -DNDEBUG -DNDEBUG_DP -O3 -funroll-loops -ffast-math -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -MD -MQ 'src/25a6634@@draw-tree@exe/tools_draw-tree.cc.o' -MF 'src/25a6634@@draw-tree@exe/tools_draw-tree.cc.o.d' -o 'src/25a6634@@draw-tree@exe/tools_draw-tree.cc.o' -c ../src/tools/draw-tree.cc [256/256] c++ -o src/draw-tree 'src/25a6634@@draw-tree@exe/tools_draw-tree.cc.o' -Wl,--no-undefined -Wl,--as-needed -g -O2 -ffile-prefix-map=/build/bali-phy-3.4+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -Wl,-z,relro -Wl,-z,now -Wl,--start-group src/libbali-phy.a -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono /usr/lib/x86_64-linux-gnu/libcairo.so -lboost_program_options -lboost_random -lboost_system -lboost_filesystem -lboost_chrono -Wl,--end-group '-Wl,-rpath,$ORIGIN/' -Wl,-rpath-link,/build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/src dh_auto_test -O--buildsystem=meson cd obj-x86_64-linux-gnu && LC_ALL=C.UTF-8 MESON_TESTTHREADS=15 ninja test [1/4] Generating git-version.h with a custom command. [1/2] Running all tests. 1/30 bali-phy version OK 0.02 s 2/30 bali-phy help OK 0.09 s 3/30 bali-phy 5d test OK 2.04 s 4/30 bali-phy 5d +A 50 OK 8.95 s 5/30 bali-phy 5d -A 200 OK 6.50 s 6/30 model_P --help OK 0.02 s 7/30 statreport --help OK 0.04 s 8/30 stats-select --help OK 0.08 s 9/30 alignment-gild --help OK 0.03 s 10/30 alignment-consensus --help OK 0.02 s 11/30 alignment-max --help OK 0.02 s 12/30 alignment-chop-internal --help OK 0.01 s 13/30 alignment-indices --help OK 0.02 s 14/30 alignment-info --help OK 0.12 s 15/30 alignment-cat --help OK 0.04 s 16/30 alignment-translate --help OK 0.06 s 17/30 alignment-find --help OK 0.11 s 18/30 trees-consensus --help OK 0.06 s 19/30 tree-mean-lengths --help OK 0.02 s 20/30 mctree-mean-lengths --help OK 0.03 s 21/30 trees-to-SRQ --help OK 0.04 s 22/30 pickout --help OK 0.06 s 23/30 cut-range --help OK 0.10 s 24/30 trees-distances --help OK 0.05 s 25/30 alignment-thin --help OK 0.01 s 26/30 alignments-diff --help OK 0.05 s 27/30 tree-tool --help OK 0.03 s 28/30 alignment-distances --help OK 0.07 s 29/30 subsample --help OK 0.07 s 30/30 bali-phy testsuite OK 153.94 s Ok: 30 Expected Fail: 0 Fail: 0 Unexpected Pass: 0 Skipped: 0 Timeout: 0 Full log written to /build/bali-phy-3.4+dfsg/obj-x86_64-linux-gnu/meson-logs/testlog.txt create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --buildsystem=meson dh_testroot -O--buildsystem=meson dh_prep -O--buildsystem=meson dh_auto_install -O--buildsystem=meson cd obj-x86_64-linux-gnu && DESTDIR=/build/bali-phy-3.4\+dfsg/debian/bali-phy LC_ALL=C.UTF-8 ninja install [1/4] Generating git-version.h with a custom command. [1/2] Installing files. Installing subdir /build/bali-phy-3.4+dfsg/modules to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/Tree.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/SModel.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/SMC.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/Range.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/Prelude.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/PopGen.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/Parameters.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/MCMC.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/IModel.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/Distributions.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/Alphabet.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/Alignment.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules Installing /build/bali-phy-3.4+dfsg/modules/System/Environment.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/System Installing /build/bali-phy-3.4+dfsg/modules/SModel/ReversibleMarkov.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/SModel Installing /build/bali-phy-3.4+dfsg/modules/SModel/Nucleotides.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/SModel Installing /build/bali-phy-3.4+dfsg/modules/SModel/Likelihood.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/SModel Installing /build/bali-phy-3.4+dfsg/modules/SModel/Frequency.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/SModel Installing /build/bali-phy-3.4+dfsg/modules/SModel/Doublets.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/SModel Installing /build/bali-phy-3.4+dfsg/modules/SModel/Codons.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/SModel Installing /build/bali-phy-3.4+dfsg/modules/Foreign/Vector.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Foreign Installing /build/bali-phy-3.4+dfsg/modules/Data/Tuple.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Data Installing /build/bali-phy-3.4+dfsg/modules/Data/ReadFile.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Data Installing /build/bali-phy-3.4+dfsg/modules/Data/Ord.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Data Installing /build/bali-phy-3.4+dfsg/modules/Data/Maybe.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Data Installing /build/bali-phy-3.4+dfsg/modules/Data/List.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Data Installing /build/bali-phy-3.4+dfsg/modules/Data/JSON.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Data Installing /build/bali-phy-3.4+dfsg/modules/Data/Function.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Data Installing /build/bali-phy-3.4+dfsg/modules/Data/Bool.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Data Installing /build/bali-phy-3.4+dfsg/modules/Control/Monad.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Control Installing /build/bali-phy-3.4+dfsg/modules/Compiler/Real.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Compiler Installing /build/bali-phy-3.4+dfsg/modules/Compiler/Num.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Compiler Installing /build/bali-phy-3.4+dfsg/modules/Compiler/Base.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/modules/Compiler Installing subdir /build/bali-phy-3.4+dfsg/functions to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions Installing /build/bali-phy-3.4+dfsg/functions/models/x3x3.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/x3_sym.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/x3.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/x2x2.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/x2_sym.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/x2.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/wag_freq.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/wag.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/tn93_sym.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/tn93.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/sample.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/rs07_relaxed_rates.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/rs07.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/rs05.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/rna_16a.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/pam.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/mut_sel.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/multi_rate.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/multiMixtureModel.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/mixture.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/mg94k.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/mg94_ext.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/mg94.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/m8a_test.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/m8a.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/m8.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/m7.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/m3_test.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/m3.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/m2a_test.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/m2a.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/m1a.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/lg08_freq.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/lg08.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/k80.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/jtt.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/jc69.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/inv.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/hky85_sym.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/hky85.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/gy94_ext.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/gy94.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/gwF.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/gtr_sym.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/gtr.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/get_q.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/fe.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/fMutSel0.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/fMutSel.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/f81.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/f61.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/f3x4.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/f1x4.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/f.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/equ.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/empirical.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/density.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/dNdS.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/branch_site.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models Installing /build/bali-phy-3.4+dfsg/functions/models/Rates/log_normal.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models/Rates Installing /build/bali-phy-3.4+dfsg/functions/models/Rates/gamma.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models/Rates Installing /build/bali-phy-3.4+dfsg/functions/models/Rates/free.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models/Rates Installing /build/bali-phy-3.4+dfsg/functions/models/Frequencies/uniform.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/models/Frequencies Installing /build/bali-phy-3.4+dfsg/functions/functions/zipWith.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/zip.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/unit_mixture.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/uniform_discretize.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/tan.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/take.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/sub.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/standard_code.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/sqrt.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/sin.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/rna.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/replicate.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/quantile.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/num_branches.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/mul.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/map.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/log.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/letters.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/letter_pairs.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/length.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/intToDouble.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/getNucleotides.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/getAminoAcids.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/getAlphabet.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/exp.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/dna.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/div.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/cos.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/codons.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/add.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/aa.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions Installing /build/bali-phy-3.4+dfsg/functions/functions/constructors/Pair.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions/constructors Installing /build/bali-phy-3.4+dfsg/functions/functions/constructors/Nil.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions/constructors Installing /build/bali-phy-3.4+dfsg/functions/functions/constructors/Cons.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/functions/constructors Installing /build/bali-phy-3.4+dfsg/functions/distributions/uniform_int.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/uniform.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/poisson.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/normal.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/log_normal.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/log_laplace.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/log_gamma.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/laplace.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/iid.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/geometric.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/gamma.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/exponential.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/dirichlet_on.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/dirichlet.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/binomial.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/beta.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing /build/bali-phy-3.4+dfsg/functions/distributions/bernoulli.json to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/functions/distributions Installing subdir /build/bali-phy-3.4+dfsg/help to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help Installing /build/bali-phy-3.4+dfsg/help/parameters.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help Installing /build/bali-phy-3.4+dfsg/help/alphabets.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help Installing /build/bali-phy-3.4+dfsg/help/parameters/priors.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/parameters Installing /build/bali-phy-3.4+dfsg/help/commands/version.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/verbose.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/unalign.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/tree.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/test.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/subsample.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/smodel.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/set.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/seed.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/scale.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/print.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/pre-burnin.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/package-path.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/name.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/model.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/link.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/iterations.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/initial-value.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/imodel.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/enable.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/disable.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/config.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/branch-lengths.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/alphabet.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/align.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/commands/Rao-Blackwellize.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/commands Installing /build/bali-phy-3.4+dfsg/help/alphabets/genetic-code.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /build/bali-phy-3.4+dfsg/help/alphabets/Triplets.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /build/bali-phy-3.4+dfsg/help/alphabets/Doublets.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing /build/bali-phy-3.4+dfsg/help/alphabets/Codons.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/help/alphabets Installing subdir /build/bali-phy-3.4+dfsg/examples to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/table1.accessions to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/paper.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/other.accessions to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/additional.accessions to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/76.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/76.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/76-muscle.ph to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/76-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/76-clustalw.ph to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/76-clustalw.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/37.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/37.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/37-muscle.ph to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/37-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/37-clustalw.ph to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/37-clustalw.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/30.ph to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/30.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/30.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/30.aln to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/30-muscle.ph to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/30-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/30-clustalw.ph to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/microbotryum/30-clustalw.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/microbotryum Installing /build/bali-phy-3.4+dfsg/examples/sequences/lrRNA/mollusc12.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/lrRNA/mollusc.rna.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/lrRNA/mollusc.gb to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/lrRNA/mollusc.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/lrRNA/keep.pl to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/lrRNA/NOTES.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/lrRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/ferns/orig.nex to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /build/bali-phy-3.4+dfsg/examples/sequences/ferns/orig.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /build/bali-phy-3.4+dfsg/examples/sequences/ferns/config2.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /build/bali-phy-3.4+dfsg/examples/sequences/ferns/config.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /build/bali-phy-3.4+dfsg/examples/sequences/ferns/cleaned.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /build/bali-phy-3.4+dfsg/examples/sequences/ferns/README.txt to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ferns Installing /build/bali-phy-3.4+dfsg/examples/sequences/Miklos-2008/xylose_isomerase.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Miklos-2008/subtilase.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Miklos-2008/rr_receiver.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Miklos-2008/parvalbumin-like.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Miklos-2008/papain.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Miklos-2008/lysozyme.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Miklos-2008/legume_lectin.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Miklos-2008/lectin.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Miklos-2008/haloperoxidase.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Miklos-2008/annexin.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Miklos-2008/Starch_binding_domain.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Miklos-2008/Src_homology_2_domains.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Miklos-2008 Installing /build/bali-phy-3.4+dfsg/examples/sequences/ITS/ITS2-trimmed.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS Installing /build/bali-phy-3.4+dfsg/examples/sequences/ITS/ITS1-trimmed.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS Installing /build/bali-phy-3.4+dfsg/examples/sequences/ITS/5.8S.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/ITS Installing /build/bali-phy-3.4+dfsg/examples/sequences/HIV/HIVSIV.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV Installing /build/bali-phy-3.4+dfsg/examples/sequences/HIV/chain-2005/pol.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /build/bali-phy-3.4+dfsg/examples/sequences/HIV/chain-2005/pol-common.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /build/bali-phy-3.4+dfsg/examples/sequences/HIV/chain-2005/pol-clustal.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /build/bali-phy-3.4+dfsg/examples/sequences/HIV/chain-2005/env.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /build/bali-phy-3.4+dfsg/examples/sequences/HIV/chain-2005/env-common.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /build/bali-phy-3.4+dfsg/examples/sequences/HIV/chain-2005/env-clustal.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /build/bali-phy-3.4+dfsg/examples/sequences/HIV/chain-2005/env-clustal-codons.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/HIV/chain-2005 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Globins/some.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-3.4+dfsg/examples/sequences/Globins/many.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-3.4+dfsg/examples/sequences/Globins/many-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-3.4+dfsg/examples/sequences/Globins/globins.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-3.4+dfsg/examples/sequences/Globins/few.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-3.4+dfsg/examples/sequences/Globins/few-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-3.4+dfsg/examples/sequences/Globins/few-clustalw.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-3.4+dfsg/examples/sequences/Globins/few-clustalw.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-3.4+dfsg/examples/sequences/Globins/bglobin.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-3.4+dfsg/examples/sequences/Globins/10-globins.xml to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-3.4+dfsg/examples/sequences/Globins/10-globins-Lunter.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Globins Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/v-src.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-mafft.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/v-src-fsa.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/sod.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.2.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.2.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.1.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/sod-prank.1.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/sod-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/sod-mafft.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/sod-fsa.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4.MAP.tree to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/sod-bali-phy-C20-gamma4-c50.PP.tree to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/globins.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.2.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.2.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.1.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/globins-prank.1.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/globins-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/globins-mafft.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/globins-fsa.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4.MAP.tree to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Feng-Doolittle-1987/globins-bali-phy-C20-gamma4-c50.PP.tree to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Feng-Doolittle-1987 Installing /build/bali-phy-3.4+dfsg/examples/sequences/Enolase/enolase-38.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase Installing /build/bali-phy-3.4+dfsg/examples/sequences/Enolase/enolase-38-trimmed.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Enolase Installing /build/bali-phy-3.4+dfsg/examples/sequences/EF-Tu/5d.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-3.4+dfsg/examples/sequences/EF-Tu/5d-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-3.4+dfsg/examples/sequences/EF-Tu/5d-clustalw.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-3.4+dfsg/examples/sequences/EF-Tu/5d-clustalw.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-3.4+dfsg/examples/sequences/EF-Tu/48b.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-3.4+dfsg/examples/sequences/EF-Tu/48b-clustalw.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-3.4+dfsg/examples/sequences/EF-Tu/48b-clustalw.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-3.4+dfsg/examples/sequences/EF-Tu/25-mafft.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-3.4+dfsg/examples/sequences/EF-Tu/12d.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-3.4+dfsg/examples/sequences/EF-Tu/12d-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-3.4+dfsg/examples/sequences/EF-Tu/12d-clustalw.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-3.4+dfsg/examples/sequences/EF-Tu/12d-clustalw.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/EF-Tu Installing /build/bali-phy-3.4+dfsg/examples/sequences/Duplications/trp-tyr/tyr.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /build/bali-phy-3.4+dfsg/examples/sequences/Duplications/trp-tyr/tyr-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /build/bali-phy-3.4+dfsg/examples/sequences/Duplications/trp-tyr/trp.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /build/bali-phy-3.4+dfsg/examples/sequences/Duplications/trp-tyr/trp-tyr-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /build/bali-phy-3.4+dfsg/examples/sequences/Duplications/trp-tyr/trp-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/trp-tyr Installing /build/bali-phy-3.4+dfsg/examples/sequences/Duplications/hisA-hisF/hisF.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /build/bali-phy-3.4+dfsg/examples/sequences/Duplications/hisA-hisF/hisF-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /build/bali-phy-3.4+dfsg/examples/sequences/Duplications/hisA-hisF/hisA.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /build/bali-phy-3.4+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /build/bali-phy-3.4+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.ph to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /build/bali-phy-3.4+dfsg/examples/sequences/Duplications/hisA-hisF/hisA-hisF-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/Duplications/hisA-hisF Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/5d.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/5d-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/5d-clustalw.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/5d-clustalw.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-t-coffee.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-t-coffee.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-probcons-RNA.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-probcons-RNA-trained.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-fsa.ph to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-fsa.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-dialign2-2.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-clustalw.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-clustalw.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-consensus.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-c10.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-WPD.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.tree to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/48-GTR-DP6-MAP.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-tcoffee.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-tcoffee.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-t-coffee.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-t-coffee.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-probcons-RNA.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-probcons-RNA-trained.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-poy.trees to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-poy.tree to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-poy.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-poy.command to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-muscle.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-fsa.ph to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-fsa.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-dialign2-2.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-clustalw.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-clustalw.dnd to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-c50.tree to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-c50.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/sequences/5S-rRNA/25-GTR-LN8-WPD.fasta to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/sequences/5S-rRNA Installing /build/bali-phy-3.4+dfsg/examples/models/ys to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /build/bali-phy-3.4+dfsg/examples/models/xs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /build/bali-phy-3.4+dfsg/examples/models/LinearRegression.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /build/bali-phy-3.4+dfsg/examples/models/Demo5.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /build/bali-phy-3.4+dfsg/examples/models/Demo4.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /build/bali-phy-3.4+dfsg/examples/models/Demo3.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /build/bali-phy-3.4+dfsg/examples/models/Demo2.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /build/bali-phy-3.4+dfsg/examples/models/Demo1.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /build/bali-phy-3.4+dfsg/examples/models/Demo.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /build/bali-phy-3.4+dfsg/examples/models/CoalMine.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing /build/bali-phy-3.4+dfsg/examples/models/AirLine.hs to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy/examples/models Installing src/bali-phy to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/builtins/Array.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Data.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Prelude.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Alphabet.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Pair.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Modifiables.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Alignment.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/PopGen.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Distribution.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Range.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/SModel.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/MCMC.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Vector.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Environment.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/SMC.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/builtins/Real.so to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy Installing src/model_P to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/statreport to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/stats-select to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignment-gild to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignment-consensus to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignment-max to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignment-chop-internal to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignment-indices to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignment-info to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignment-cat to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignment-translate to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignment-find to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/trees-consensus to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/tree-mean-lengths to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/mctree-mean-lengths to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/trees-to-SRQ to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/pickout to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/cut-range to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/trees-distances to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignment-thin to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignments-diff to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/tree-tool to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignment-distances to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/bali-subsample to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/alignment-draw to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/trees-bootstrap to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing src/draw-tree to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing doc/bali-phy.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/model_P.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/statreport.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/stats-select.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-gild.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-consensus.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-max.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-chop-internal.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-indices.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-info.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-cat.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-translate.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-find.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/trees-consensus.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/tree-mean-lengths.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/mctree-mean-lengths.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/trees-to-SRQ.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/pickout.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/cut-range.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/trees-distances.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-thin.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignments-diff.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/tree-tool.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-distances.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/bali-subsample.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/alignment-draw.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/trees-bootstrap.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/draw-tree.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/bp-analyze.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/bali-phy-pkg.1 to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/man/man1 Installing doc/developer.html to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy Installing /build/bali-phy-3.4+dfsg/scripts/bp-analyze to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing /build/bali-phy-3.4+dfsg/scripts/bali-phy-pkg to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/bin Installing /build/bali-phy-3.4+dfsg/scripts/compare-runs.R to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /build/bali-phy-3.4+dfsg/scripts/compare-runs2.R to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /build/bali-phy-3.4+dfsg/scripts/tree-plot1.R to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /build/bali-phy-3.4+dfsg/scripts/tree-plot2.R to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /build/bali-phy-3.4+dfsg/scripts/tree-plot3.R to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /build/bali-phy-3.4+dfsg/scripts/tree-plot2-3D.R to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /build/bali-phy-3.4+dfsg/scripts/tree-plot1-3D.R to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /build/bali-phy-3.4+dfsg/scripts/tree-plot3-3D.R to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/lib/bali-phy/libexec Installing /build/bali-phy-3.4+dfsg/doc/README.html to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy Installing /build/bali-phy-3.4+dfsg/doc/README.xhtml to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy Installing /build/bali-phy-3.4+dfsg/doc/README.pdf to /build/bali-phy-3.4+dfsg/debian/bali-phy/usr/share/doc/bali-phy dh_installdocs -O--buildsystem=meson dh_installchangelogs -O--buildsystem=meson dh_installman -O--buildsystem=meson dh_installinit -O--buildsystem=meson dh_perl -O--buildsystem=meson dh_link -O--buildsystem=meson dh_strip_nondeterminism -O--buildsystem=meson dh_compress -O--buildsystem=meson dh_fixperms -O--buildsystem=meson dh_missing -O--buildsystem=meson dh_strip -O--buildsystem=meson dh_makeshlibs -O--buildsystem=meson dh_shlibdeps -O--buildsystem=meson dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alignment.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 20 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/PopGen.so contains an unresolvable reference to symbol _ZNK7EVectorcvSt6vectorIdSaIdEEEv: it's probably a plugin dpkg-shlibdeps: warning: 5 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Modifiables.so contains an unresolvable reference to symbol _ZN13OperationArgs20evaluate_slot_to_regEi: it's probably a plugin dpkg-shlibdeps: warning: 24 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Data.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Distribution.so contains an unresolvable reference to symbol _ZN13OperationArgs23evaluate_reg_to_object_Ei: it's probably a plugin dpkg-shlibdeps: warning: 35 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Array.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 10 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Alphabet.so contains an unresolvable reference to symbol _Z8demangleRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE: it's probably a plugin dpkg-shlibdeps: warning: 22 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Pair.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/MCMC.so contains an unresolvable reference to symbol _ZN8reg_heap15release_contextEi: it's probably a plugin dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Vector.so contains an unresolvable reference to symbol _Z8demangleRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE: it's probably a plugin dpkg-shlibdeps: warning: 3 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Prelude.so contains an unresolvable reference to symbol _ZNK13OperationArgs9referenceEi: it's probably a plugin dpkg-shlibdeps: warning: 15 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Environment.so contains an unresolvable reference to symbol _Z8demangleRKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Real.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SMC.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/SModel.so contains an unresolvable reference to symbol _ZNK8Doublets15is_watson_crickEi: it's probably a plugin dpkg-shlibdeps: warning: 21 other similar warnings have been skipped (use -v to see them all) dpkg-shlibdeps: warning: debian/bali-phy/usr/lib/bali-phy/Range.so contains an unresolvable reference to symbol _ZN13OperationArgs8evaluateEi: it's probably a plugin dh_installdeb -O--buildsystem=meson dh_gencontrol -O--buildsystem=meson dh_md5sums -O--buildsystem=meson dh_builddeb -O--buildsystem=meson dpkg-deb: building package 'bali-phy-dbgsym' in '../bali-phy-dbgsym_3.4+dfsg-1_amd64.deb'. dpkg-deb: building package 'bali-phy' in '../bali-phy_3.4+dfsg-1_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../bali-phy_3.4+dfsg-1_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4113185 and its subdirectories I: Current time: Sun Nov 28 18:59:19 -12 2021 I: pbuilder-time-stamp: 1638169159 Mon Nov 29 06:59:21 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos15-amd64.debian.net. Mon Nov 29 06:59:21 UTC 2021 I: Preparing to do remote build '2' on ionos15-amd64.debian.net. Mon Nov 29 07:05:36 UTC 2021 I: Deleting $TMPDIR on ionos15-amd64.debian.net. Mon Nov 29 07:05:37 UTC 2021 I: bali-phy_3.4+dfsg-1_amd64.changes: Format: 1.8 Date: Thu, 13 Dec 2018 20:56:16 -0500 Source: bali-phy Binary: bali-phy bali-phy-dbgsym Architecture: amd64 Version: 3.4+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Benjamin Redelings Description: bali-phy - Bayesian Inference of Alignment and Phylogeny Changes: bali-phy (3.4+dfsg-1) unstable; urgency=medium . * New upstream version * Remove patches applied upstream. * Update to Standards-Version 4.2.1 Checksums-Sha1: af6dc9a79bc9ee607af5191ee1dea9cee8f28f07 133757800 bali-phy-dbgsym_3.4+dfsg-1_amd64.deb 89955923056f9864552a36a66f6384e33ac8472d 8147 bali-phy_3.4+dfsg-1_amd64.buildinfo 06f197d64a1331b811f83453ce0870082d4c2937 5161368 bali-phy_3.4+dfsg-1_amd64.deb Checksums-Sha256: 068b317878bab52c7a8d8be6accfe63671f1ac9e9e89de9d8c0e03e8fb001c7d 133757800 bali-phy-dbgsym_3.4+dfsg-1_amd64.deb 7012de345de7179deb9c97865eb1921cd13131a7f7fbadbe7f86c7bc56996024 8147 bali-phy_3.4+dfsg-1_amd64.buildinfo d0f491e2095e6337713cf1b9075acdb2865d78c15d581398b3c5be40a33b30e7 5161368 bali-phy_3.4+dfsg-1_amd64.deb Files: 421f801fbbcc8e67be8f967f10e02c18 133757800 debug optional bali-phy-dbgsym_3.4+dfsg-1_amd64.deb 30bba4f03b387433eb8a6ee3d82db27b 8147 science optional bali-phy_3.4+dfsg-1_amd64.buildinfo ad07a2a91fd21350641401768cb3e344 5161368 science optional bali-phy_3.4+dfsg-1_amd64.deb Mon Nov 29 07:05:38 UTC 2021 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.YZGQvHx8qU/bali-phy_3.4+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.YZGQvHx8qU/bali-phy_3.4+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.YZGQvHx8qU/bali-phy_3.4+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.YZGQvHx8qU/b1/bali-phy_3.4+dfsg-1_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.YZGQvHx8qU/b2/bali-phy_3.4+dfsg-1_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 1.987s) 1.986s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 1.707s) 1.707s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Mon Nov 29 07:05:41 UTC 2021 I: found no differences in the changes files, and a .buildinfo file also exists. Mon Nov 29 07:05:41 UTC 2021 I: bali-phy from buster built successfully and reproducibly on amd64. Mon Nov 29 07:05:43 UTC 2021 I: Submitting .buildinfo files to external archives: Mon Nov 29 07:05:43 UTC 2021 I: Submitting 12K b1/bali-phy_3.4+dfsg-1_amd64.buildinfo.asc Mon Nov 29 07:05:43 UTC 2021 I: Submitting 12K b2/bali-phy_3.4+dfsg-1_amd64.buildinfo.asc Mon Nov 29 07:05:44 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Nov 29 07:05:44 UTC 2021 I: Done submitting .buildinfo files. Mon Nov 29 07:05:44 UTC 2021 I: Removing signed bali-phy_3.4+dfsg-1_amd64.buildinfo.asc files: removed './b1/bali-phy_3.4+dfsg-1_amd64.buildinfo.asc' removed './b2/bali-phy_3.4+dfsg-1_amd64.buildinfo.asc'