Mon Nov 29 05:07:22 UTC 2021 I: starting to build acedb/buster/amd64 on jenkins on '2021-11-29 05:07' Mon Nov 29 05:07:22 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/amd64_29/28680/console.log Mon Nov 29 05:07:22 UTC 2021 I: Downloading source for buster/acedb=4.9.39+dfsg.02-4 --2021-11-29 05:07:23-- http://deb.debian.org/debian/pool/main/a/acedb/acedb_4.9.39%2bdfsg.02-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2235 (2.2K) Saving to: ‘acedb_4.9.39+dfsg.02-4.dsc’ 0K .. 100% 11.4M=0s 2021-11-29 05:07:23 (11.4 MB/s) - ‘acedb_4.9.39+dfsg.02-4.dsc’ saved [2235/2235] Mon Nov 29 05:07:23 UTC 2021 I: acedb_4.9.39+dfsg.02-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: acedb Binary: acedb-other-dotter, acedb-other-belvu, acedb-other Architecture: any all Version: 4.9.39+dfsg.02-4 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille Homepage: http://www.acedb.org/ Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/med-team/acedb Vcs-Git: https://salsa.debian.org/med-team/acedb.git Build-Depends: debhelper (>= 11~), libreadline-dev, libglib2.0-dev, libgtk2.0-dev, pkg-config, csh, flex, libfl-dev, bison Package-List: acedb-other deb science optional arch=any acedb-other-belvu deb oldlibs optional arch=all acedb-other-dotter deb oldlibs optional arch=all Checksums-Sha1: d78b470eff140c5a5df62b7ad340eb20fa337038 5622420 acedb_4.9.39+dfsg.02.orig.tar.xz a263ff56ec38e5090db50f792b7fac29c222064d 13544 acedb_4.9.39+dfsg.02-4.debian.tar.xz Checksums-Sha256: b909940e5292a149cd49eeb2f10b0d2f004193e0e685e81866339725d9ae72be 5622420 acedb_4.9.39+dfsg.02.orig.tar.xz 03a15965c11369bd9aa4d69e10f1c2e0d1a24c065e20726a185054f258a096ca 13544 acedb_4.9.39+dfsg.02-4.debian.tar.xz Files: c41a0ae9a6240130ecb09a7802b5930a 5622420 acedb_4.9.39+dfsg.02.orig.tar.xz b5d8c976076a7ccaa0fa6db25c1e8b9f 13544 acedb_4.9.39+dfsg.02-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlvTL9QRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFBxQ//VarbQjSfAjXHzhG0I64biWkypOkRI2eK qRCkTy5sZSkL84c2cnKdyNzmQLiIgRpEbijHixNgL93k7oppu1z7NtyuvB+uwDME Et/JV/7ChPu9uvgiOW37DVFx0lfh5Vc1cJJKwYS7i6MLXnjw/yqlzUUxg0orsW0t BcT1URwNEKAypWK19YjiZxXEk8AbEkNfp1Uw2Bmckd5jAKSaK2vauUEg1mlalPRq LvYVDAXUVf3S9aZKp2EuRv/z+cpT2SjAh35iNbq03wguQmUwREVh7lS/uwkLXOL6 r3coz/BDZ9q4p+VaNCJCYk6D3LF+sCyA5epH2KR81bvkqcYz+FjZBQwYabyPyjoe tmzmDYgAAnrVstxGLGg4G8QR5I/Iusrgad+de027h9FwChdR7UjUQ2qKxwADkZDA n7JzwvHPaMsLHSr30FcHVSbLx60IJeuWfCrMu6MJBZDf8vH/0IsCGOR0iV54O0A0 3zb3XxyvLGG3OAVKKc8jNy/jVXa47W7ePnId4LVpCgWhwMa3dKhqzFYuMlcNOj3K g01Go6sxl5DAW35oLNwwZ04xU35gLI9zm0Flxuh1axAMCsGstxs+Rlc+65htF4e7 yMYpGtlPBgQbB1Y1A+WcEGHijDE0v3QjQj7mlVl9IqRYQy0KOQ+2UldrIeBbYc78 LSiwalyiA0Y= =C4a1 -----END PGP SIGNATURE----- Mon Nov 29 05:07:23 UTC 2021 I: Checking whether the package is not for us Mon Nov 29 05:07:23 UTC 2021 I: Starting 1st build on remote node ionos11-amd64.debian.net. Mon Nov 29 05:07:23 UTC 2021 I: Preparing to do remote build '1' on ionos11-amd64.debian.net. Mon Nov 29 05:09:56 UTC 2021 I: Deleting $TMPDIR on ionos11-amd64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 28 17:07:24 -12 2021 I: pbuilder-time-stamp: 1638162444 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/buster-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [acedb_4.9.39+dfsg.02-4.dsc] I: copying [./acedb_4.9.39+dfsg.02.orig.tar.xz] I: copying [./acedb_4.9.39+dfsg.02-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/root/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Oct 26 03:16:36 2018 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./acedb_4.9.39+dfsg.02-4.dsc dpkg-source: info: extracting acedb in acedb-4.9.39+dfsg.02 dpkg-source: info: unpacking acedb_4.9.39+dfsg.02.orig.tar.xz dpkg-source: info: unpacking acedb_4.9.39+dfsg.02-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying blxview_gtk_namespace_conflict.patch dpkg-source: info: applying belvu_help.patch dpkg-source: info: applying efetch_help.patch dpkg-source: info: applying dotter_help.patch dpkg-source: info: applying binutils-gold.patch dpkg-source: info: applying no-curses.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying fix_hardening_errors.patch dpkg-source: info: applying mayhem.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying no_dotter_and_belvu.patch dpkg-source: info: applying libfl.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2724312/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='amd64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=15' DISTRIBUTION='' HOME='/root' HOST_ARCH='amd64' IFS=' ' INVOCATION_ID='c03551486729414e96f9ccc1e0d1860f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2724312' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.xV7zhxtsQo/pbuilderrc_4fMa --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/buster-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.xV7zhxtsQo/b1 --logfile b1/build.log acedb_4.9.39+dfsg.02-4.dsc' SUDO_GID='111' SUDO_UID='106' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos11-amd64 5.10.0-9-amd64 #1 SMP Debian 5.10.70-1 (2021-09-30) x86_64 GNU/Linux I: ls -l /bin total 5116 -rwxr-xr-x 1 root root 1168776 Apr 17 2019 bash -rwxr-xr-x 3 root root 38984 Jul 10 2019 bunzip2 -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzcat lrwxrwxrwx 1 root root 6 Jul 10 2019 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2227 Jul 10 2019 bzdiff lrwxrwxrwx 1 root root 6 Jul 10 2019 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Jun 24 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 10 2019 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3641 Jul 10 2019 bzgrep -rwxr-xr-x 3 root root 38984 Jul 10 2019 bzip2 -rwxr-xr-x 1 root root 14328 Jul 10 2019 bzip2recover lrwxrwxrwx 1 root root 6 Jul 10 2019 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 10 2019 bzmore -rwxr-xr-x 1 root root 43744 Feb 28 2019 cat -rwxr-xr-x 1 root root 64320 Feb 28 2019 chgrp -rwxr-xr-x 1 root root 64288 Feb 28 2019 chmod -rwxr-xr-x 1 root root 72512 Feb 28 2019 chown -rwxr-xr-x 1 root root 146880 Feb 28 2019 cp -rwxr-xr-x 1 root root 121464 Jan 17 2019 dash -rwxr-xr-x 1 root root 109408 Feb 28 2019 date -rwxr-xr-x 1 root root 76712 Feb 28 2019 dd -rwxr-xr-x 1 root root 93744 Feb 28 2019 df -rwxr-xr-x 1 root root 138856 Feb 28 2019 dir -rwxr-xr-x 1 root root 84288 Jan 9 2019 dmesg lrwxrwxrwx 1 root root 8 Sep 26 2018 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Sep 26 2018 domainname -> hostname -rwxr-xr-x 1 root root 39520 Feb 28 2019 echo -rwxr-xr-x 1 root root 28 Jan 7 2019 egrep -rwxr-xr-x 1 root root 35424 Feb 28 2019 false -rwxr-xr-x 1 root root 28 Jan 7 2019 fgrep -rwxr-xr-x 1 root root 68880 Jan 9 2019 findmnt -rwsr-xr-x 1 root root 34896 Apr 22 2020 fusermount -rwxr-xr-x 1 root root 198976 Jan 7 2019 grep -rwxr-xr-x 2 root root 2345 Jan 5 2019 gunzip -rwxr-xr-x 1 root root 6375 Jan 5 2019 gzexe -rwxr-xr-x 1 root root 98048 Jan 5 2019 gzip -rwxr-xr-x 1 root root 26696 Sep 26 2018 hostname -rwxr-xr-x 1 root root 68552 Feb 28 2019 ln -rwxr-xr-x 1 root root 56760 Jul 26 2018 login -rwxr-xr-x 1 root root 138856 Feb 28 2019 ls -rwxr-xr-x 1 root root 108624 Jan 9 2019 lsblk -rwxr-xr-x 1 root root 89088 Feb 28 2019 mkdir -rwxr-xr-x 1 root root 68544 Feb 28 2019 mknod -rwxr-xr-x 1 root root 43808 Feb 28 2019 mktemp -rwxr-xr-x 1 root root 43008 Jan 9 2019 more -rwsr-xr-x 1 root root 51280 Jan 9 2019 mount -rwxr-xr-x 1 root root 14408 Jan 9 2019 mountpoint -rwxr-xr-x 1 root root 138728 Feb 28 2019 mv lrwxrwxrwx 1 root root 8 Sep 26 2018 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Feb 14 2019 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 39616 Feb 28 2019 pwd lrwxrwxrwx 1 root root 4 Apr 17 2019 rbash -> bash -rwxr-xr-x 1 root root 47776 Feb 28 2019 readlink -rwxr-xr-x 1 root root 68416 Feb 28 2019 rm -rwxr-xr-x 1 root root 47776 Feb 28 2019 rmdir -rwxr-xr-x 1 root root 23312 Jan 21 2019 run-parts -rwxr-xr-x 1 root root 122224 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Nov 7 09:58 sh -> dash -rwxr-xr-x 1 root root 39552 Feb 28 2019 sleep -rwxr-xr-x 1 root root 80672 Feb 28 2019 stty -rwsr-xr-x 1 root root 63568 Jan 9 2019 su -rwxr-xr-x 1 root root 35488 Feb 28 2019 sync -rwxr-xr-x 1 root root 445560 Apr 23 2019 tar -rwxr-xr-x 1 root root 14440 Jan 21 2019 tempfile -rwxr-xr-x 1 root root 97152 Feb 28 2019 touch -rwxr-xr-x 1 root root 35424 Feb 28 2019 true -rwxr-xr-x 1 root root 14328 Apr 22 2020 ulockmgr_server -rwsr-xr-x 1 root root 34888 Jan 9 2019 umount -rwxr-xr-x 1 root root 39584 Feb 28 2019 uname -rwxr-xr-x 2 root root 2345 Jan 5 2019 uncompress -rwxr-xr-x 1 root root 138856 Feb 28 2019 vdir -rwxr-xr-x 1 root root 34896 Jan 9 2019 wdctl -rwxr-xr-x 1 root root 946 Jan 21 2019 which lrwxrwxrwx 1 root root 8 Sep 26 2018 ypdomainname -> hostname -rwxr-xr-x 1 root root 1983 Jan 5 2019 zcat -rwxr-xr-x 1 root root 1677 Jan 5 2019 zcmp -rwxr-xr-x 1 root root 5879 Jan 5 2019 zdiff -rwxr-xr-x 1 root root 29 Jan 5 2019 zegrep -rwxr-xr-x 1 root root 29 Jan 5 2019 zfgrep -rwxr-xr-x 1 root root 2080 Jan 5 2019 zforce -rwxr-xr-x 1 root root 7584 Jan 5 2019 zgrep -rwxr-xr-x 1 root root 2205 Jan 5 2019 zless -rwxr-xr-x 1 root root 1841 Jan 5 2019 zmore -rwxr-xr-x 1 root root 4552 Jan 5 2019 znew I: user script /srv/workspace/pbuilder/2724312/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: amd64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 11~), libreadline-dev, libglib2.0-dev, libgtk2.0-dev, pkg-config, csh, flex, libfl-dev, bison dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19195 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 11~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libreadline-dev; however: Package libreadline-dev is not installed. pbuilder-satisfydepends-dummy depends on libglib2.0-dev; however: Package libglib2.0-dev is not installed. pbuilder-satisfydepends-dummy depends on libgtk2.0-dev; however: Package libgtk2.0-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on csh; however: Package csh is not installed. pbuilder-satisfydepends-dummy depends on flex; however: Package flex is not installed. pbuilder-satisfydepends-dummy depends on libfl-dev; however: Package libfl-dev is not installed. pbuilder-satisfydepends-dummy depends on bison; however: Package bison is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bison{a} bsdmainutils{a} csh{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} flex{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gir1.2-atk-1.0{a} gir1.2-freedesktop{a} gir1.2-gdkpixbuf-2.0{a} gir1.2-glib-2.0{a} gir1.2-gtk-2.0{a} gir1.2-harfbuzz-0.0{a} gir1.2-pango-1.0{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libatk1.0-0{a} libatk1.0-data{a} libatk1.0-dev{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbison-dev{a} libblkid-dev{a} libbsd0{a} libcairo-gobject2{a} libcairo-script-interpreter2{a} libcairo2{a} libcairo2-dev{a} libcroco3{a} libcups2{a} libdatrie1{a} libdbus-1-3{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libffi-dev{a} libfile-stripnondeterminism-perl{a} libfl-dev{a} libfl2{a} libfontconfig1{a} libfontconfig1-dev{a} libfreetype6{a} libfreetype6-dev{a} libfribidi-dev{a} libfribidi0{a} libgdk-pixbuf2.0-0{a} libgdk-pixbuf2.0-bin{a} libgdk-pixbuf2.0-common{a} libgdk-pixbuf2.0-dev{a} libgirepository-1.0-1{a} libglib2.0-0{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libgraphite2-3{a} libgraphite2-dev{a} libgssapi-krb5-2{a} libgtk2.0-0{a} libgtk2.0-common{a} libgtk2.0-dev{a} libharfbuzz-dev{a} libharfbuzz-gobject0{a} libharfbuzz-icu0{a} libharfbuzz0b{a} libice-dev{a} libice6{a} libicu-dev{a} libicu63{a} libjbig0{a} libjpeg62-turbo{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblzo2-2{a} libmagic-mgc{a} libmagic1{a} libmount-dev{a} libmpdec2{a} libncurses-dev{a} libncurses6{a} libpango-1.0-0{a} libpango1.0-dev{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpangoxft-1.0-0{a} libpcre16-3{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpixman-1-dev{a} libpng-dev{a} libpng16-16{a} libpthread-stubs0-dev{a} libpython3-stdlib{a} libpython3.7-minimal{a} libpython3.7-stdlib{a} libreadline-dev{a} libreadline7{a} librsvg2-2{a} librsvg2-common{a} libselinux1-dev{a} libsepol1-dev{a} libsigsegv2{a} libsm-dev{a} libsm6{a} libssl1.1{a} libthai-data{a} libthai0{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libx11-6{a} libx11-data{a} libx11-dev{a} libxau-dev{a} libxau6{a} libxcb-render0{a} libxcb-render0-dev{a} libxcb-shm0{a} libxcb-shm0-dev{a} libxcb1{a} libxcb1-dev{a} libxcomposite-dev{a} libxcomposite1{a} libxcursor-dev{a} libxcursor1{a} libxdamage-dev{a} libxdamage1{a} libxdmcp-dev{a} libxdmcp6{a} libxext-dev{a} libxext6{a} libxfixes-dev{a} libxfixes3{a} libxft-dev{a} libxft2{a} libxi-dev{a} libxi6{a} libxinerama-dev{a} libxinerama1{a} libxml2{a} libxml2-utils{a} libxrandr-dev{a} libxrandr2{a} libxrender-dev{a} libxrender1{a} lsb-base{a} m4{a} man-db{a} mime-support{a} pango1.0-tools{a} pkg-config{a} po-debconf{a} python3{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.7{a} python3.7-minimal{a} readline-common{a} sensible-utils{a} shared-mime-info{a} ucf{a} uuid-dev{a} x11-common{a} x11proto-composite-dev{a} x11proto-core-dev{a} x11proto-damage-dev{a} x11proto-dev{a} x11proto-fixes-dev{a} x11proto-input-dev{a} x11proto-randr-dev{a} x11proto-xext-dev{a} x11proto-xinerama-dev{a} xorg-sgml-doctools{a} xtrans-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl dbus krb5-locales libarchive-cpio-perl libgail-common libgpm2 libgtk2.0-bin libltdl-dev libmail-sendmail-perl libpng-tools lynx python wget xdg-user-dirs 0 packages upgraded, 199 newly installed, 0 to remove and 0 not upgraded. Need to get 86.7 MB of archives. After unpacking 324 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian buster/main amd64 libbsd0 amd64 0.9.1-2+deb10u1 [99.5 kB] Get: 2 http://deb.debian.org/debian buster/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get: 3 http://deb.debian.org/debian buster/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get: 4 http://deb.debian.org/debian buster/main amd64 groff-base amd64 1.22.4-3+deb10u1 [916 kB] Get: 5 http://deb.debian.org/debian buster/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get: 6 http://deb.debian.org/debian buster/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get: 7 http://deb.debian.org/debian buster/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get: 8 http://deb.debian.org/debian buster/main amd64 m4 amd64 1.4.18-2 [203 kB] Get: 9 http://deb.debian.org/debian buster/main amd64 flex amd64 2.6.4-6.2 [456 kB] Get: 10 http://deb.debian.org/debian buster/main amd64 libssl1.1 amd64 1.1.1d-0+deb10u7 [1539 kB] Get: 11 http://deb.debian.org/debian buster/main amd64 libpython3.7-minimal amd64 3.7.3-2+deb10u3 [589 kB] Get: 12 http://deb.debian.org/debian buster/main amd64 libexpat1 amd64 2.2.6-2+deb10u1 [106 kB] Get: 13 http://deb.debian.org/debian buster/main amd64 python3.7-minimal amd64 3.7.3-2+deb10u3 [1737 kB] Get: 14 http://deb.debian.org/debian buster/main amd64 python3-minimal amd64 3.7.3-1 [36.6 kB] Get: 15 http://deb.debian.org/debian buster/main amd64 mime-support all 3.62 [37.2 kB] Get: 16 http://deb.debian.org/debian buster/main amd64 libmpdec2 amd64 2.4.2-2 [87.2 kB] Get: 17 http://deb.debian.org/debian buster/main amd64 readline-common all 7.0-5 [70.6 kB] Get: 18 http://deb.debian.org/debian buster/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get: 19 http://deb.debian.org/debian buster/main amd64 libpython3.7-stdlib amd64 3.7.3-2+deb10u3 [1734 kB] Get: 20 http://deb.debian.org/debian buster/main amd64 python3.7 amd64 3.7.3-2+deb10u3 [330 kB] Get: 21 http://deb.debian.org/debian buster/main amd64 libpython3-stdlib amd64 3.7.3-1 [20.0 kB] Get: 22 http://deb.debian.org/debian buster/main amd64 python3 amd64 3.7.3-1 [61.5 kB] Get: 23 http://deb.debian.org/debian buster/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get: 24 http://deb.debian.org/debian buster/main amd64 libmagic-mgc amd64 1:5.35-4+deb10u2 [242 kB] Get: 25 http://deb.debian.org/debian buster/main amd64 libmagic1 amd64 1:5.35-4+deb10u2 [118 kB] Get: 26 http://deb.debian.org/debian buster/main amd64 file amd64 1:5.35-4+deb10u2 [66.4 kB] Get: 27 http://deb.debian.org/debian buster/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get: 28 http://deb.debian.org/debian buster/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get: 29 http://deb.debian.org/debian buster/main amd64 hicolor-icon-theme all 0.17-2 [11.4 kB] Get: 30 http://deb.debian.org/debian buster/main amd64 libglib2.0-0 amd64 2.58.3-2+deb10u3 [1259 kB] Get: 31 http://deb.debian.org/debian buster/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+deb10u1 [133 kB] Get: 32 http://deb.debian.org/debian buster/main amd64 libpng16-16 amd64 1.6.36-6 [292 kB] Get: 33 http://deb.debian.org/debian buster/main amd64 libjbig0 amd64 2.1-3.1+b2 [31.0 kB] Get: 34 http://deb.debian.org/debian buster/main amd64 libwebp6 amd64 0.6.1-2+deb10u1 [261 kB] Get: 35 http://deb.debian.org/debian buster/main amd64 libtiff5 amd64 4.1.0+git191117-2~deb10u2 [271 kB] Get: 36 http://deb.debian.org/debian buster/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get: 37 http://deb.debian.org/debian buster/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get: 38 http://deb.debian.org/debian buster/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get: 39 http://deb.debian.org/debian buster/main amd64 libx11-data all 2:1.6.7-1+deb10u2 [299 kB] Get: 40 http://deb.debian.org/debian buster/main amd64 libx11-6 amd64 2:1.6.7-1+deb10u2 [757 kB] Get: 41 http://deb.debian.org/debian buster/main amd64 libicu63 amd64 63.1-6+deb10u1 [8300 kB] Get: 42 http://deb.debian.org/debian buster/main amd64 libxml2 amd64 2.9.4+dfsg1-7+deb10u2 [689 kB] Get: 43 http://deb.debian.org/debian buster/main amd64 shared-mime-info amd64 1.10-1 [766 kB] Get: 44 http://deb.debian.org/debian buster/main amd64 libgdk-pixbuf2.0-common all 2.38.1+dfsg-1 [316 kB] Get: 45 http://deb.debian.org/debian buster/main amd64 libgdk-pixbuf2.0-0 amd64 2.38.1+dfsg-1 [177 kB] Get: 46 http://deb.debian.org/debian buster/main amd64 gtk-update-icon-cache amd64 3.24.5-1 [81.7 kB] Get: 47 http://deb.debian.org/debian buster/main amd64 libfreetype6 amd64 2.9.1-3+deb10u2 [380 kB] Get: 48 http://deb.debian.org/debian buster/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get: 49 http://deb.debian.org/debian buster/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get: 50 http://deb.debian.org/debian buster/main amd64 libfontconfig1 amd64 2.13.1-2 [346 kB] Get: 51 http://deb.debian.org/debian buster/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get: 52 http://deb.debian.org/debian buster/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get: 53 http://deb.debian.org/debian buster/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get: 54 http://deb.debian.org/debian buster/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get: 55 http://deb.debian.org/debian buster/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get: 56 http://deb.debian.org/debian buster/main amd64 libcairo2 amd64 1.16.0-4+deb10u1 [688 kB] Get: 57 http://deb.debian.org/debian buster/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get: 58 http://deb.debian.org/debian buster/main amd64 fontconfig amd64 2.13.1-2 [405 kB] Get: 59 http://deb.debian.org/debian buster/main amd64 libfribidi0 amd64 1.0.5-3.1+deb10u1 [63.7 kB] Get: 60 http://deb.debian.org/debian buster/main amd64 libthai-data all 0.1.28-2 [170 kB] Get: 61 http://deb.debian.org/debian buster/main amd64 libdatrie1 amd64 0.2.12-2 [39.3 kB] Get: 62 http://deb.debian.org/debian buster/main amd64 libthai0 amd64 0.1.28-2 [54.1 kB] Get: 63 http://deb.debian.org/debian buster/main amd64 libpango-1.0-0 amd64 1.42.4-8~deb10u1 [186 kB] Get: 64 http://deb.debian.org/debian buster/main amd64 libgraphite2-3 amd64 1.3.13-7 [80.7 kB] Get: 65 http://deb.debian.org/debian buster/main amd64 libharfbuzz0b amd64 2.3.1-1 [1187 kB] Get: 66 http://deb.debian.org/debian buster/main amd64 libpangoft2-1.0-0 amd64 1.42.4-8~deb10u1 [68.3 kB] Get: 67 http://deb.debian.org/debian buster/main amd64 libpangocairo-1.0-0 amd64 1.42.4-8~deb10u1 [55.7 kB] Get: 68 http://deb.debian.org/debian buster/main amd64 librsvg2-2 amd64 2.44.10-2.1 [1280 kB] Get: 69 http://deb.debian.org/debian buster/main amd64 librsvg2-common amd64 2.44.10-2.1 [23.3 kB] Get: 70 http://deb.debian.org/debian buster/main amd64 adwaita-icon-theme all 3.30.1-1 [11.7 MB] Get: 71 http://deb.debian.org/debian buster/main amd64 autoconf all 2.69-11 [341 kB] Get: 72 http://deb.debian.org/debian buster/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get: 73 http://deb.debian.org/debian buster/main amd64 automake all 1:1.16.1-4 [771 kB] Get: 74 http://deb.debian.org/debian buster/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get: 75 http://deb.debian.org/debian buster/main amd64 libbison-dev amd64 2:3.3.2.dfsg-1 [500 kB] Get: 76 http://deb.debian.org/debian buster/main amd64 bison amd64 2:3.3.2.dfsg-1 [871 kB] Get: 77 http://deb.debian.org/debian buster/main amd64 csh amd64 20110502-4+deb10u1 [241 kB] Get: 78 http://deb.debian.org/debian buster/main amd64 libtool all 2.4.6-9 [547 kB] Get: 79 http://deb.debian.org/debian buster/main amd64 dh-autoreconf all 19 [16.9 kB] Get: 80 http://deb.debian.org/debian buster/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get: 81 http://deb.debian.org/debian buster/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get: 82 http://deb.debian.org/debian buster/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get: 83 http://deb.debian.org/debian buster/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get: 84 http://deb.debian.org/debian buster/main amd64 dwz amd64 0.12-3 [78.0 kB] Get: 85 http://deb.debian.org/debian buster/main amd64 libncurses6 amd64 6.1+20181013-2+deb10u2 [102 kB] Get: 86 http://deb.debian.org/debian buster/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get: 87 http://deb.debian.org/debian buster/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 88 http://deb.debian.org/debian buster/main amd64 po-debconf all 1.0.21 [248 kB] Get: 89 http://deb.debian.org/debian buster/main amd64 debhelper all 12.1.1 [1016 kB] Get: 90 http://deb.debian.org/debian buster/main amd64 libgirepository-1.0-1 amd64 1.58.3-2 [92.8 kB] Get: 91 http://deb.debian.org/debian buster/main amd64 gir1.2-glib-2.0 amd64 1.58.3-2 [143 kB] Get: 92 http://deb.debian.org/debian buster/main amd64 libatk1.0-data all 2.30.0-2 [145 kB] Get: 93 http://deb.debian.org/debian buster/main amd64 libatk1.0-0 amd64 2.30.0-2 [50.6 kB] Get: 94 http://deb.debian.org/debian buster/main amd64 gir1.2-atk-1.0 amd64 2.30.0-2 [25.3 kB] Get: 95 http://deb.debian.org/debian buster/main amd64 libcairo-gobject2 amd64 1.16.0-4+deb10u1 [125 kB] Get: 96 http://deb.debian.org/debian buster/main amd64 gir1.2-freedesktop amd64 1.58.3-2 [20.3 kB] Get: 97 http://deb.debian.org/debian buster/main amd64 gir1.2-gdkpixbuf-2.0 amd64 2.38.1+dfsg-1 [18.3 kB] Get: 98 http://deb.debian.org/debian buster/main amd64 libgtk2.0-common all 2.24.32-3 [2698 kB] Get: 99 http://deb.debian.org/debian buster/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB] Get: 100 http://deb.debian.org/debian buster/main amd64 libpangoxft-1.0-0 amd64 1.42.4-8~deb10u1 [50.1 kB] Get: 101 http://deb.debian.org/debian buster/main amd64 gir1.2-pango-1.0 amd64 1.42.4-8~deb10u1 [55.8 kB] Get: 102 http://deb.debian.org/debian buster/main amd64 libavahi-common-data amd64 0.7-4+deb10u1 [122 kB] Get: 103 http://deb.debian.org/debian buster/main amd64 libavahi-common3 amd64 0.7-4+deb10u1 [54.4 kB] Get: 104 http://deb.debian.org/debian buster/main amd64 libdbus-1-3 amd64 1.12.20-0+deb10u1 [215 kB] Get: 105 http://deb.debian.org/debian buster/main amd64 libavahi-client3 amd64 0.7-4+deb10u1 [58.2 kB] Get: 106 http://deb.debian.org/debian buster/main amd64 libkeyutils1 amd64 1.6-6 [15.0 kB] Get: 107 http://deb.debian.org/debian buster/main amd64 libkrb5support0 amd64 1.17-3+deb10u3 [65.8 kB] Get: 108 http://deb.debian.org/debian buster/main amd64 libk5crypto3 amd64 1.17-3+deb10u3 [122 kB] Get: 109 http://deb.debian.org/debian buster/main amd64 libkrb5-3 amd64 1.17-3+deb10u3 [370 kB] Get: 110 http://deb.debian.org/debian buster/main amd64 libgssapi-krb5-2 amd64 1.17-3+deb10u3 [158 kB] Get: 111 http://deb.debian.org/debian buster/main amd64 libcups2 amd64 2.2.10-6+deb10u4 [324 kB] Get: 112 http://deb.debian.org/debian buster/main amd64 libxcomposite1 amd64 1:0.4.4-2 [16.5 kB] Get: 113 http://deb.debian.org/debian buster/main amd64 libxfixes3 amd64 1:5.0.3-1 [21.9 kB] Get: 114 http://deb.debian.org/debian buster/main amd64 libxcursor1 amd64 1:1.1.15-2 [36.6 kB] Get: 115 http://deb.debian.org/debian buster/main amd64 libxdamage1 amd64 1:1.1.4-3+b3 [14.9 kB] Get: 116 http://deb.debian.org/debian buster/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get: 117 http://deb.debian.org/debian buster/main amd64 libxinerama1 amd64 2:1.1.4-2 [17.7 kB] Get: 118 http://deb.debian.org/debian buster/main amd64 libxrandr2 amd64 2:1.5.1-1 [37.5 kB] Get: 119 http://deb.debian.org/debian buster/main amd64 libgtk2.0-0 amd64 2.24.32-3 [1809 kB] Get: 120 http://deb.debian.org/debian buster/main amd64 gir1.2-gtk-2.0 amd64 2.24.32-3 [213 kB] Get: 121 http://deb.debian.org/debian buster/main amd64 libharfbuzz-gobject0 amd64 2.3.1-1 [848 kB] Get: 122 http://deb.debian.org/debian buster/main amd64 gir1.2-harfbuzz-0.0 amd64 2.3.1-1 [853 kB] Get: 123 http://deb.debian.org/debian buster/main amd64 icu-devtools amd64 63.1-6+deb10u1 [189 kB] Get: 124 http://deb.debian.org/debian buster/main amd64 pkg-config amd64 0.29-6 [63.5 kB] Get: 125 http://deb.debian.org/debian buster/main amd64 libffi-dev amd64 3.2.1-9 [156 kB] Get: 126 http://deb.debian.org/debian buster/main amd64 libglib2.0-data all 2.58.3-2+deb10u3 [1111 kB] Get: 127 http://deb.debian.org/debian buster/main amd64 libglib2.0-bin amd64 2.58.3-2+deb10u3 [126 kB] Get: 128 http://deb.debian.org/debian buster/main amd64 python3-lib2to3 all 3.7.3-1 [76.7 kB] Get: 129 http://deb.debian.org/debian buster/main amd64 python3-distutils all 3.7.3-1 [142 kB] Get: 130 http://deb.debian.org/debian buster/main amd64 libglib2.0-dev-bin amd64 2.58.3-2+deb10u3 [158 kB] Get: 131 http://deb.debian.org/debian buster/main amd64 uuid-dev amd64 2.33.1-0.1 [93.6 kB] Get: 132 http://deb.debian.org/debian buster/main amd64 libblkid-dev amd64 2.33.1-0.1 [225 kB] Get: 133 http://deb.debian.org/debian buster/main amd64 libmount-dev amd64 2.33.1-0.1 [232 kB] Get: 134 http://deb.debian.org/debian buster/main amd64 libpcre16-3 amd64 2:8.39-12 [259 kB] Get: 135 http://deb.debian.org/debian buster/main amd64 libpcre32-3 amd64 2:8.39-12 [250 kB] Get: 136 http://deb.debian.org/debian buster/main amd64 libpcrecpp0v5 amd64 2:8.39-12 [152 kB] Get: 137 http://deb.debian.org/debian buster/main amd64 libpcre3-dev amd64 2:8.39-12 [650 kB] Get: 138 http://deb.debian.org/debian buster/main amd64 libsepol1-dev amd64 2.8-1 [338 kB] Get: 139 http://deb.debian.org/debian buster/main amd64 libselinux1-dev amd64 2.8-1+b1 [169 kB] Get: 140 http://deb.debian.org/debian buster/main amd64 zlib1g-dev amd64 1:1.2.11.dfsg-1 [214 kB] Get: 141 http://deb.debian.org/debian buster/main amd64 libglib2.0-dev amd64 2.58.3-2+deb10u3 [1484 kB] Get: 142 http://deb.debian.org/debian buster/main amd64 libatk1.0-dev amd64 2.30.0-2 [88.3 kB] Get: 143 http://deb.debian.org/debian buster/main amd64 liblzo2-2 amd64 2.10-0.1 [56.1 kB] Get: 144 http://deb.debian.org/debian buster/main amd64 libcairo-script-interpreter2 amd64 1.16.0-4+deb10u1 [160 kB] Get: 145 http://deb.debian.org/debian buster/main amd64 libexpat1-dev amd64 2.2.6-2+deb10u1 [153 kB] Get: 146 http://deb.debian.org/debian buster/main amd64 libpng-dev amd64 1.6.36-6 [300 kB] Get: 147 http://deb.debian.org/debian buster/main amd64 libfreetype6-dev amd64 2.9.1-3+deb10u2 [544 kB] Get: 148 http://deb.debian.org/debian buster/main amd64 libfontconfig1-dev amd64 2.13.1-2 [966 kB] Get: 149 http://deb.debian.org/debian buster/main amd64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB] Get: 150 http://deb.debian.org/debian buster/main amd64 x11proto-dev all 2018.4-4 [251 kB] Get: 151 http://deb.debian.org/debian buster/main amd64 x11proto-core-dev all 2018.4-4 [3128 B] Get: 152 http://deb.debian.org/debian buster/main amd64 libxau-dev amd64 1:1.0.8-1+b2 [23.1 kB] Get: 153 http://deb.debian.org/debian buster/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Get: 154 http://deb.debian.org/debian buster/main amd64 x11proto-input-dev all 2018.4-4 [3132 B] Get: 155 http://deb.debian.org/debian buster/main amd64 xtrans-dev all 1.3.5-1 [100 kB] Get: 156 http://deb.debian.org/debian buster/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5344 B] Get: 157 http://deb.debian.org/debian buster/main amd64 libxcb1-dev amd64 1.13.1-2 [174 kB] Get: 158 http://deb.debian.org/debian buster/main amd64 libx11-dev amd64 2:1.6.7-1+deb10u2 [825 kB] Get: 159 http://deb.debian.org/debian buster/main amd64 libxrender-dev amd64 1:0.9.10-1 [40.8 kB] Get: 160 http://deb.debian.org/debian buster/main amd64 x11proto-xext-dev all 2018.4-4 [3128 B] Get: 161 http://deb.debian.org/debian buster/main amd64 libxext-dev amd64 2:1.3.3-1+b2 [107 kB] Get: 162 http://deb.debian.org/debian buster/main amd64 lsb-base all 10.2019051400 [28.4 kB] Get: 163 http://deb.debian.org/debian buster/main amd64 x11-common all 1:7.7+19 [251 kB] Get: 164 http://deb.debian.org/debian buster/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get: 165 http://deb.debian.org/debian buster/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get: 166 http://deb.debian.org/debian buster/main amd64 libice-dev amd64 2:1.0.9-2 [66.8 kB] Get: 167 http://deb.debian.org/debian buster/main amd64 libsm-dev amd64 2:1.2.3-1 [38.0 kB] Get: 168 http://deb.debian.org/debian buster/main amd64 libpixman-1-dev amd64 0.36.0-1 [554 kB] Get: 169 http://deb.debian.org/debian buster/main amd64 libxcb-render0-dev amd64 1.13.1-2 [112 kB] Get: 170 http://deb.debian.org/debian buster/main amd64 libxcb-shm0-dev amd64 1.13.1-2 [100 kB] Get: 171 http://deb.debian.org/debian buster/main amd64 libcairo2-dev amd64 1.16.0-4+deb10u1 [734 kB] Get: 172 http://deb.debian.org/debian buster/main amd64 libfl2 amd64 2.6.4-6.2 [103 kB] Get: 173 http://deb.debian.org/debian buster/main amd64 libfl-dev amd64 2.6.4-6.2 [104 kB] Get: 174 http://deb.debian.org/debian buster/main amd64 libfribidi-dev amd64 1.0.5-3.1+deb10u1 [101 kB] Get: 175 http://deb.debian.org/debian buster/main amd64 libgdk-pixbuf2.0-bin amd64 2.38.1+dfsg-1 [24.1 kB] Get: 176 http://deb.debian.org/debian buster/main amd64 libgdk-pixbuf2.0-dev amd64 2.38.1+dfsg-1 [49.5 kB] Get: 177 http://deb.debian.org/debian buster/main amd64 libgraphite2-dev amd64 1.3.13-7 [23.1 kB] Get: 178 http://deb.debian.org/debian buster/main amd64 libharfbuzz-icu0 amd64 2.3.1-1 [834 kB] Get: 179 http://deb.debian.org/debian buster/main amd64 libicu-dev amd64 63.1-6+deb10u1 [9186 kB] Get: 180 http://deb.debian.org/debian buster/main amd64 libharfbuzz-dev amd64 2.3.1-1 [1307 kB] Get: 181 http://deb.debian.org/debian buster/main amd64 libxft-dev amd64 2.3.2-2 [68.7 kB] Get: 182 http://deb.debian.org/debian buster/main amd64 pango1.0-tools amd64 1.42.4-8~deb10u1 [55.8 kB] Get: 183 http://deb.debian.org/debian buster/main amd64 libpango1.0-dev amd64 1.42.4-8~deb10u1 [139 kB] Get: 184 http://deb.debian.org/debian buster/main amd64 x11proto-xinerama-dev all 2018.4-4 [3132 B] Get: 185 http://deb.debian.org/debian buster/main amd64 libxinerama-dev amd64 2:1.1.4-2 [20.1 kB] Get: 186 http://deb.debian.org/debian buster/main amd64 x11proto-fixes-dev all 1:2018.4-4 [3140 B] Get: 187 http://deb.debian.org/debian buster/main amd64 libxfixes-dev amd64 1:5.0.3-1 [23.8 kB] Get: 188 http://deb.debian.org/debian buster/main amd64 libxi-dev amd64 2:1.7.9-1 [241 kB] Get: 189 http://deb.debian.org/debian buster/main amd64 x11proto-randr-dev all 2018.4-4 [3132 B] Get: 190 http://deb.debian.org/debian buster/main amd64 libxrandr-dev amd64 2:1.5.1-1 [45.0 kB] Get: 191 http://deb.debian.org/debian buster/main amd64 libxcursor-dev amd64 1:1.1.15-2 [44.1 kB] Get: 192 http://deb.debian.org/debian buster/main amd64 x11proto-composite-dev all 1:2018.4-4 [3140 B] Get: 193 http://deb.debian.org/debian buster/main amd64 libxcomposite-dev amd64 1:0.4.4-2 [20.1 kB] Get: 194 http://deb.debian.org/debian buster/main amd64 x11proto-damage-dev all 1:2018.4-4 [3140 B] Get: 195 http://deb.debian.org/debian buster/main amd64 libxdamage-dev amd64 1:1.1.4-3+b3 [14.6 kB] Get: 196 http://deb.debian.org/debian buster/main amd64 libxml2-utils amd64 2.9.4+dfsg1-7+deb10u2 [99.8 kB] Get: 197 http://deb.debian.org/debian buster/main amd64 libgtk2.0-dev amd64 2.24.32-3 [2688 kB] Get: 198 http://deb.debian.org/debian buster/main amd64 libncurses-dev amd64 6.1+20181013-2+deb10u2 [333 kB] Get: 199 http://deb.debian.org/debian buster/main amd64 libreadline-dev amd64 7.0-5 [133 kB] Fetched 86.7 MB in 3s (33.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libbsd0:amd64. 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No diversion 'diversion of /usr/sbin/update-icon-caches to /usr/sbin/update-icon-caches.gtk2 by libgtk-3-bin', none removed. No diversion 'diversion of /usr/share/man/man8/update-icon-caches.8.gz to /usr/share/man/man8/update-icon-caches.gtk2.8.gz by libgtk-3-bin', none removed. Unpacking gtk-update-icon-cache (3.24.5-1) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../025-libfreetype6_2.9.1-3+deb10u2_amd64.deb ... Unpacking libfreetype6:amd64 (2.9.1-3+deb10u2) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../026-fonts-dejavu-core_2.37-1_all.deb ... Unpacking fonts-dejavu-core (2.37-1) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../027-fontconfig-config_2.13.1-2_all.deb ... Unpacking fontconfig-config (2.13.1-2) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../028-libfontconfig1_2.13.1-2_amd64.deb ... 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Setting up libbison-dev:amd64 (2:3.3.2.dfsg-1) ... Setting up libdatrie1:amd64 (0.2.12-2) ... Setting up libmagic-mgc (1:5.35-4+deb10u2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-2+deb10u3) ... No schema files found: doing nothing. Setting up libgdk-pixbuf2.0-common (2.38.1+dfsg-1) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libmagic1:amd64 (1:5.35-4+deb10u2) ... Setting up libsepol1-dev:amd64 (2.8-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up liblzo2-2:amd64 (2.10-0.1) ... Setting up file (1:5.35-4+deb10u2) ... Setting up libffi-dev:amd64 (3.2.1-9) ... Setting up libpthread-stubs0-dev:amd64 (0.4-1) ... Setting up libjbig0:amd64 (2.1-3.1+b2) ... Setting up libicu63:amd64 (63.1-6+deb10u1) ... Setting up libkrb5support0:amd64 (1.17-3+deb10u3) ... Setting up xtrans-dev (1.3.5-1) ... Setting up libgraphite2-dev:amd64 (1.3.13-7) ... Setting up autotools-dev (20180224.1) ... Setting up libglib2.0-data (2.58.3-2+deb10u3) ... Setting up libexpat1-dev:amd64 (2.2.6-2+deb10u1) ... Setting up libjpeg62-turbo:amd64 (1:1.5.2-2+deb10u1) ... Setting up libx11-data (2:1.6.7-1+deb10u2) ... Setting up uuid-dev:amd64 (2.33.1-0.1) ... Setting up libavahi-common-data:amd64 (0.7-4+deb10u1) ... Setting up libncurses6:amd64 (6.1+20181013-2+deb10u2) ... Setting up libdbus-1-3:amd64 (1.12.20-0+deb10u1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up libfribidi0:amd64 (1.0.5-3.1+deb10u1) ... Setting up libpng16-16:amd64 (1.6.36-6) ... Setting up libpcre32-3:amd64 (2:8.39-12) ... Setting up autopoint (0.19.8.1-9) ... Setting up libwebp6:amd64 (0.6.1-2+deb10u1) ... Setting up icu-devtools (63.1-6+deb10u1) ... Setting up pkg-config (0.29-6) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up libfl2:amd64 (2.6.4-6.2) ... Setting up libk5crypto3:amd64 (1.17-3+deb10u3) ... Setting up zlib1g-dev:amd64 (1:1.2.11.dfsg-1) ... Setting up libatk1.0-data (2.30.0-2) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libthai-data (0.1.28-2) ... Setting up libgirepository-1.0-1:amd64 (1.58.3-2) ... Setting up xorg-sgml-doctools (1:1.11-1) ... Setting up libgtk2.0-common (2.24.32-3) ... Setting up libatk1.0-0:amd64 (2.30.0-2) ... Setting up libkrb5-3:amd64 (1.17-3+deb10u3) ... Setting up libtiff5:amd64 (4.1.0+git191117-2~deb10u2) ... Setting up libmpdec2:amd64 (2.4.2-2) ... Setting up libbsd0:amd64 (0.9.1-2+deb10u1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up readline-common (7.0-5) ... Setting up libicu-dev:amd64 (63.1-6+deb10u1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+deb10u2) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up x11proto-dev (2018.4-4) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up libblkid-dev:amd64 (2.33.1-0.1) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libpython3.7-stdlib:amd64 (3.7.3-2+deb10u3) ... Setting up libncurses-dev:amd64 (6.1+20181013-2+deb10u2) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libxau-dev:amd64 (1:1.0.8-1+b2) ... Setting up csh (20110502-4+deb10u1) ... update-alternatives: using /bin/bsd-csh to provide /bin/csh (csh) in auto mode Setting up libice-dev:amd64 (2:1.0.9-2) ... Setting up libtool (2.4.6-9) ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up libpcre3-dev:amd64 (2:8.39-12) ... Setting up x11proto-randr-dev (2018.4-4) ... Setting up libfribidi-dev:amd64 (1.0.5-3.1+deb10u1) ... Setting up libpng-dev:amd64 (1.6.36-6) ... Setting up libavahi-common3:amd64 (0.7-4+deb10u1) ... Setting up libglib2.0-bin (2.58.3-2+deb10u3) ... Setting up m4 (1.4.18-2) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up libreadline-dev:amd64 (7.0-5) ... Setting up x11proto-xinerama-dev (2018.4-4) ... Setting up libthai0:amd64 (0.1.28-2) ... Setting up libxdmcp-dev:amd64 (1:1.1.2-3) ... Setting up x11proto-damage-dev (1:2018.4-4) ... Setting up x11proto-composite-dev (1:2018.4-4) ... Setting up libfreetype6:amd64 (2.9.1-3+deb10u2) ... Setting up x11proto-core-dev (2018.4-4) ... Setting up shared-mime-info (1.10-1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libgssapi-krb5-2:amd64 (1.17-3+deb10u3) ... Setting up x11proto-input-dev (2018.4-4) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up ucf (3.0038+nmu1) ... Setting up gir1.2-glib-2.0:amd64 (1.58.3-2) ... Setting up autoconf (2.69-11) ... Setting up x11proto-xext-dev (2018.4-4) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3+deb10u1) ... Setting up bison (2:3.3.2.dfsg-1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libx11-6:amd64 (2:1.6.7-1+deb10u2) ... Setting up libharfbuzz0b:amd64 (2.3.1-1) ... Setting up libxml2-utils (2.9.4+dfsg1-7+deb10u2) ... Setting up x11proto-fixes-dev (1:2018.4-4) ... Setting up libxcomposite1:amd64 (1:0.4.4-2) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libavahi-client3:amd64 (0.7-4+deb10u1) ... Setting up libmount-dev:amd64 (2.33.1-0.1) ... Setting up libpython3-stdlib:amd64 (3.7.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up python3.7 (3.7.3-2+deb10u3) ... Setting up flex (2.6.4-6.2) ... Setting up gettext (0.19.8.1-9) ... Setting up libharfbuzz-icu0:amd64 (2.3.1-1) ... Setting up libxcb1-dev:amd64 (1.13.1-2) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up gir1.2-atk-1.0:amd64 (2.30.0-2) ... Setting up libsm-dev:amd64 (2:1.2.3-1) ... Setting up libselinux1-dev:amd64 (2.8-1+b1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libx11-dev:amd64 (2:1.6.7-1+deb10u2) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up python3 (3.7.3-1) ... Setting up libharfbuzz-gobject0:amd64 (2.3.1-1) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gir1.2-harfbuzz-0.0:amd64 (2.3.1-1) ... Setting up libfl-dev:amd64 (2.6.4-6.2) ... Setting up libfreetype6-dev:amd64 (2.9.1-3+deb10u2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxcb-shm0-dev:amd64 (1.13.1-2) ... Setting up libxfixes3:amd64 (1:5.0.3-1) ... Setting up libgdk-pixbuf2.0-0:amd64 (2.38.1+dfsg-1) ... Setting up libxinerama1:amd64 (2:1.1.4-2) ... Setting up libxrandr2:amd64 (2:1.5.1-1) ... Setting up libxcb-render0-dev:amd64 (1.13.1-2) ... Setting up libxext-dev:amd64 (2:1.3.3-1+b2) ... Setting up libcups2:amd64 (2.2.10-6+deb10u4) ... Setting up libgdk-pixbuf2.0-bin (2.38.1+dfsg-1) ... Setting up libfontconfig1:amd64 (2.13.1-2) ... Setting up python3-lib2to3 (3.7.3-1) ... Setting up libxrender-dev:amd64 (1:0.9.10-1) ... Setting up python3-distutils (3.7.3-1) ... Setting up libglib2.0-dev-bin (2.58.3-2+deb10u3) ... Setting up gtk-update-icon-cache (3.24.5-1) ... Setting up fontconfig (2.13.1-2) ... Regenerating fonts cache... done. Setting up libxft2:amd64 (2.3.2-2) ... Setting up libfontconfig1-dev:amd64 (2.13.1-2) ... Setting up libxdamage1:amd64 (1:1.1.4-3+b3) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up gir1.2-gdkpixbuf-2.0:amd64 (2.38.1+dfsg-1) ... Setting up po-debconf (1.0.21) ... Setting up libxcursor1:amd64 (1:1.1.15-2) ... Setting up libpango-1.0-0:amd64 (1.42.4-8~deb10u1) ... Setting up libcairo2:amd64 (1.16.0-4+deb10u1) ... Setting up libxfixes-dev:amd64 (1:5.0.3-1) ... 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Setting up gir1.2-pango-1.0:amd64 (1.42.4-8~deb10u1) ... Setting up librsvg2-common:amd64 (2.44.10-2.1) ... Setting up libcairo2-dev:amd64 (1.16.0-4+deb10u1) ... Setting up adwaita-icon-theme (3.30.1-1) ... update-alternatives: using /usr/share/icons/Adwaita/cursor.theme to provide /usr/share/icons/default/index.theme (x-cursor-theme) in auto mode Setting up libpango1.0-dev:amd64 (1.42.4-8~deb10u1) ... Setting up libgtk2.0-0:amd64 (2.24.32-3) ... Setting up gir1.2-gtk-2.0:amd64 (2.24.32-3) ... Setting up libgtk2.0-dev:amd64 (2.24.32-3) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Processing triggers for libc-bin (2.28-10) ... Processing triggers for libgdk-pixbuf2.0-0:amd64 (2.38.1+dfsg-1) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.23-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/acedb-4.9.39+dfsg.02/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../acedb_4.9.39+dfsg.02-4_source.changes dpkg-buildpackage: info: source package acedb dpkg-buildpackage: info: source version 4.9.39+dfsg.02-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 fakeroot debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/acedb-4.9.39+dfsg.02' echo "this goes into an endless loop :-(" this goes into an endless loop :-( make[1]: Leaving directory '/build/acedb-4.9.39+dfsg.02' debian/rules override_dh_clean make[1]: Entering directory '/build/acedb-4.9.39+dfsg.02' dh_clean bin rm -fr bin.LINUX_4 sed -i 's?^\(.define ACEDB_RELEASE_DIR\) ".*"?\1 "/nfs/disk100/acedb/RELEASE.2007_07_06.BUILD/bin.DARWIN_4"?' wnq/aceversion.c make[1]: Leaving directory '/build/acedb-4.9.39+dfsg.02' debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/acedb-4.9.39+dfsg.02' ln -sf bin.LINUX_4 bin /usr/bin/make tools other CFLAGS="-g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/build/acedb-4.9.39+dfsg.02' making makeUserPasswd for LINUX_4 make[3]: Entering directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o aceversion.o aceversion.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o freesubs.o freesubs.c freesubs.c: In function 'freeread': freesubs.c:363:8: warning: this 'while' clause does not guard... [-Wmisleading-indentation] { while (getc(fil) != '\n' && !feof(fil)) ; ^~~~~ freesubs.c:364:8: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'while' ++*line ; ^~ In file included from freesubs.c:42: At top level: ../wh/version.h:133:20: warning: 'ut_copyright_string' defined but not used [-Wunused-variable] static const char *ut_copyright_string = \ ^~~~~~~~~~~~~~~~~~~ freesubs.c:55:1: note: in expansion of macro 'UT_COPYRIGHT_STRING' UT_COPYRIGHT_STRING(FREE_TITLE, FREE_VERSION, FREE_RELEASE, FREE_UPDATE, FREE_DESC) ^~~~~~~~~~~~~~~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o freeout.o freeout.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o messubs.o messubs.c messubs.c: In function 'uMessCrash': messubs.c:197:26: warning: the address of 'prefix' will always evaluate as 'true' [-Waddress] prefixLength = _prefix ? strlen(_prefix) : 0 ; \ ^ messubs.c:507:5: note: in expansion of macro 'ACFORMAT' ACFORMAT (prefix) ; ^~~~~~~~ messubs.c:507:15: warning: the address of 'prefix' will always evaluate as 'true' [-Waddress] ACFORMAT (prefix) ; ^~~~~~ messubs.c:199:7: note: in definition of macro 'ACFORMAT' if (_prefix) catText (s, _prefix) ;\ ^~~~~~~ messubs.c: In function 'messGetErrorProgram': messubs.c:889:8: warning: assignment discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] cp = g_get_prgname() ; /* mieg, apr 2004: this call may return NULL */ ^ messubs.c: In function 'uMessCrash': messubs.c:509:5: warning: 'strncpy' specified bound 32768 equals destination size [-Wstringop-truncation] strncpy (messbuf, message, BUFSIZE) ; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ messubs.c: In function 'messout': messubs.c:407:3: warning: 'strncpy' specified bound 32768 equals destination size [-Wstringop-truncation] strncpy (messbuf, message, BUFSIZE) ; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ messubs.c: In function 'messExit': messubs.c:465:3: warning: 'strncpy' specified bound 32768 equals destination size [-Wstringop-truncation] strncpy (messbuf, message, BUFSIZE) ; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ messubs.c: In function 'printToBuf.constprop': messubs.c:811:3: warning: 'strncpy' specified bound 2000 equals destination size [-Wstringop-truncation] strncpy (buffer, message, buflen) ; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ messubs.c: In function 'messerror': messubs.c:446:3: warning: 'strncpy' specified bound 32768 equals destination size [-Wstringop-truncation] strncpy (messbuf, message, BUFSIZE) ; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ messubs.c: In function 'messErrorCond': messubs.c:638:2: warning: 'strncpy' specified bound 32768 equals destination size [-Wstringop-truncation] strncpy (messbuf, message, BUFSIZE) ; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ messubs.c: In function 'messQuery': messubs.c:700:5: warning: 'strncpy' specified bound 32768 equals destination size [-Wstringop-truncation] strncpy (messbuf, message, BUFSIZE) ; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o memsubs.o memsubs.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o arraysub.o arraysub.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o liste.o liste.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o filsubs.o filsubs.c filsubs.c: In function 'filAge': filsubs.c:1025:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (diffYears) ^~ filsubs.c:1028:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (diffMonths) ^~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o msort.o msort.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o heap.o heap.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o timesubs.o timesubs.c timesubs.c: In function 'timeStruct': timesubs.c:242:15: warning: unused variable 'save' [-Wunused-variable] struct tm save = *tm; ^~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o bump.o bump.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o randsubs.o randsubs.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o call.o call.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o menu.o menu.c menu.c: In function 'menuAddItem': menu.c:150:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation] { for (below = menu->items ; ^~~ menu.c:153:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' if (!below) ^~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o dict.o dict.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o helpsubs.o helpsubs.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o texthelp.o texthelp.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o utils.o utils.c utils.c: In function 'strcasestr': utils.c:780:3: warning: 'g_strup' is deprecated [-Wdeprecated-declarations] g_strup(str1); ^~~~~~~ In file included from /usr/include/glib-2.0/glib.h:82, from utils.c:45: /usr/include/glib-2.0/glib/gstrfuncs.h:210:23: note: declared here gchar* g_strup (gchar *string); ^~~~~~~ utils.c:781:3: warning: 'g_strup' is deprecated [-Wdeprecated-declarations] g_strup(str2); ^~~~~~~ In file included from /usr/include/glib-2.0/glib.h:82, from utils.c:45: /usr/include/glib-2.0/glib/gstrfuncs.h:210:23: note: declared here gchar* g_strup (gchar *string); ^~~~~~~ utils.c: In function 'utPrintfSizeOfArgList': utils.c:906:32: warning: variable 'fVal' set but not used [-Wunused-but-set-variable] void *pVal; int iVal; double fVal; ^~~~ utils.c:906:19: warning: variable 'iVal' set but not used [-Wunused-but-set-variable] void *pVal; int iVal; double fVal; ^~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o vtxt.o vtxt.c vtxt.c: In function 'vtxtRemoveBetween': vtxt.c:147:24: warning: variable 'cs' set but not used [-Wunused-but-set-variable] char *cp, *cq, *cr, *cs ; ^~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o acein.o acein.c acein.c: In function 'aceInPrompt': acein.c:459:9: warning: variable 'cp' set but not used [-Wunused-but-set-variable] char *cp = 0 ; ^~ acein.c: In function 'aceInOptPrompt': acein.c:504:9: warning: variable 'cp' set but not used [-Wunused-but-set-variable] char *cp; ^~ acein.c: In function 'aceInGetChar': acein.c:2045:8: warning: implicit declaration of function 'add_history' [-Wimplicit-function-declaration] add_history(fi->stream[fi->streamlevel].text); ^~~~~~~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o aceout.o aceout.c In file included from aceout.c:36: aceout.c: In function 'aceTmpCreateDir': aceout.c:648:22: warning: passing argument 1 of 'strnew_dbg' discards 'const' qualifier from pointer target type [-Wdiscarded-qualifiers] dirname = strnew(dir, 0) ; ^~~ ../wh/regular.h:205:46: note: in definition of macro 'strnew' #define strnew(oldstring, handle) strnew_dbg(oldstring, handle,__FILE__,__LINE__) ^~~~~~~~~ ../wh/regular.h:159:7: note: expected 'char *' but argument is of type 'const char *' char *strnew_dbg(char *old, STORE_HANDLE handle, ^~~~~~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o strsubs.o strsubs.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o getopt.o getopt.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o getopt1.o getopt1.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o chronoexe.o chronoexe.c ar rlu libfree.a aceversion.o freesubs.o freeout.o messubs.o memsubs.o arraysub.o liste.o filsubs.o msort.o heap.o timesubs.o bump.o randsubs.o call.o menu.o dict.o helpsubs.o texthelp.o utils.o vtxt.o acein.o aceout.o strsubs.o getopt.o getopt1.o chronoexe.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libfree.a gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o md5c.o md5c.c ar rlu libmd5.a md5c.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libmd5.a gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c makeUserPasswd.c gcc -g -Wl,-z,relro -Wl,-z,now -o makeUserPasswd makeUserPasswd.o -L. -lfree -lmd5 -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 /usr/bin/ld: ./libfree.a(filsubs.o): in function `filTmpOpenWithSuffix': ./bin.LINUX_4/filsubs.c:588: warning: the use of `tempnam' is dangerous, better use `mkstemp' make[3]: Leaving directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' making acediff for LINUX_4 make[3]: Entering directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c acediff.c acediff.c: In function 'printFilePart': acediff.c:103:7: warning: unused variable 'c' [-Wunused-variable] int c; ^ gcc -g -Wl,-z,relro -Wl,-z,now -o acediff acediff.o -L. -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 /usr/bin/ld: ./libfree.a(filsubs.o): in function `filTmpOpenWithSuffix': ./bin.LINUX_4/filsubs.c:588: warning: the use of `tempnam' is dangerous, better use `mkstemp' make[3]: Leaving directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' making acediffsorted for LINUX_4 make[3]: Entering directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c acediffsorted.c acediffsorted.c: In function 'oneLine_next_Object': acediffsorted.c:150:29: warning: variable 'isDNA' set but not used [-Wunused-but-set-variable] BOOL isAObj, isLongText, isDNA; ^~~~~ acediffsorted.c: In function 'processDiff': acediffsorted.c:367:18: warning: variable 'obCurrB' set but not used [-Wunused-but-set-variable] Stack obCurrA, obCurrB; ^~~~~~~ gcc -g -Wl,-z,relro -Wl,-z,now -o acediffsorted acediffsorted.o -L. -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 /usr/bin/ld: ./libfree.a(filsubs.o): in function `filTmpOpenWithSuffix': ./bin.LINUX_4/filsubs.c:588: warning: the use of `tempnam' is dangerous, better use `mkstemp' make[3]: Leaving directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' making pmapace for LINUX_4 make[3]: Entering directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o pmapace2.o pmapace2.c pmapace2.c:91:6: warning: return type of 'main' is not 'int' [-Wmain] void main (int argc, char **argv) ^~~~ pmapace2.c: In function 'main': pmapace2.c:187:18: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if (*remark) ^ pmapace2.c:176:8: warning: 'strncpy' output may be truncated copying 8 bytes from a string of length 255 [-Wstringop-truncation] strncpy (gene,&buffer[3],8) ; ^~~~~~~~~~~~~~~~~~~~~~~~~~~ pmapace2.c:180:8: warning: 'strncpy' output may be truncated copying 40 bytes from a string of length 255 [-Wstringop-truncation] strncpy (remark,&buffer[11],40) ; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -Wl,-z,relro -Wl,-z,now -o pmapace pmapace2.o -L. -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 /usr/bin/ld: ./libfree.a(filsubs.o): in function `filTmpOpenWithSuffix': ./bin.LINUX_4/filsubs.c:588: warning: the use of `tempnam' is dangerous, better use `mkstemp' make[3]: Leaving directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' making diskdump for LINUX_4 make[3]: Entering directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o diskdump.o diskdump.c diskdump.c:96:6: warning: return type of 'main' is not 'int' [-Wmain] void main (int argc, char **argv) ^~~~ gcc -g -Wl,-z,relro -Wl,-z,now -o diskdump diskdump.o -L. -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 /usr/bin/ld: ./libfree.a(filsubs.o): in function `filTmpOpenWithSuffix': ./bin.LINUX_4/filsubs.c:588: warning: the use of `tempnam' is dangerous, better use `mkstemp' make[3]: Leaving directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' making diskfix for LINUX_4 make[3]: Entering directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o diskfix.o diskfix.c diskfix.c:55:6: warning: return type of 'main' is not 'int' [-Wmain] void main (int argc, char **argv) ^~~~ gcc -g -Wl,-z,relro -Wl,-z,now -o diskfix diskfix.o -L. -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 /usr/bin/ld: ./libfree.a(filsubs.o): in function `filTmpOpenWithSuffix': ./bin.LINUX_4/filsubs.c:588: warning: the use of `tempnam' is dangerous, better use `mkstemp' make[3]: Leaving directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' making metacheck for LINUX_4 make[3]: Entering directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o command.o command.c command.c: In function 'aceCommandExecute': command.c:1284:13: warning: variable 'result' set but not used [-Wunused-but-set-variable] BOOL result = FALSE ; ^~~~~~ command.c: In function 'commandDoSMap': command.c:4300:16: warning: 'status' may be used uninitialized in this function [-Wmaybe-uninitialized] if ((status & bit) && (string = sMapErrorString(status&bit))) ~~~~~~~~^~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o commandmenu.o commandmenu.c commandmenu.c: In function 'aceCommandCheckForFiles': commandmenu.c:451:9: warning: variable 'dummy' set but not used [-Wunused-but-set-variable] char *dummy ; ^~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o session.o session.c session.c: In function 'sessionInit': session.c:795:18: warning: variable 'context' set but not used [-Wunused-but-set-variable] SessionContext context = NULL ; ^~~~~~~ session.c: In function 'getConfiguredDatabaseName': session.c:1832:3: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (db_io); ^~ session.c:1833:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' { ^ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o dbpath.o dbpath.c dbpath.c: In function 'dbPathInit': dbpath.c:43:9: warning: unused variable 'cp' [-Wunused-variable] char *cp; ^~ dbpath.c: In function 'dbPathFilName': dbpath.c:162:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (ret = filGetName(stackText(s, 0), ending, spec, handle)) ^~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o aceutils.o aceutils.c aceutils.c: In function 'simpleCrashRoutine': aceutils.c:94:3: warning: implicit declaration of function 'sessionReleaseWriteAccess' [-Wimplicit-function-declaration] sessionReleaseWriteAccess() ; /* must remove lock file */ ^~~~~~~~~~~~~~~~~~~~~~~~~ aceutils.c:95:3: warning: implicit declaration of function 'readlockDeleteFile' [-Wimplicit-function-declaration] readlockDeleteFile (); /* release readlock */ ^~~~~~~~~~~~~~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o banner.o banner.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o queryexe.o queryexe.c queryexe.c:2088:13: warning: 'cdtDump' defined but not used [-Wunused-function] static void cdtDump(Stack s, CDT cdt, int level, BOOL isLeft) ^~~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o tabledefsubs.o tabledefsubs.c tabledefsubs.c: In function 'spreadCheckConditions': tabledefsubs.c:722:11: warning: variable 'i1' set but not used [-Wunused-but-set-variable] int i, i1, mine, n1, n2 ; ^~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o tabledefio.o tabledefio.c tabledefio.c: In function 'spreadSaveDefInObj': tabledefio.c:322:8: warning: variable 'buf' set but not used [-Wunused-but-set-variable] char buf[2] ; ^~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o flag.o flag.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o aql.o aql.c flex -l aqlparse.l yacc aqlparse.y mv y.tab.c aqlparse.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o aqlparse.o aqlparse.c y.tab.c: In function 'yyparse': y.tab.c:1456:16: warning: implicit declaration of function 'yylex' [-Wimplicit-function-declaration] y.tab.c:2225:7: warning: implicit declaration of function 'yyerror'; did you mean 'yyerrok'? [-Wimplicit-function-declaration] In file included from aqlparse.y:335: aqlparse.l: In function 'yylex': aqlparse.l:101:24: warning: array subscript has type 'char' [-Wchar-subscripts] #define token(x) tokPos[x] = lexPos - yyleng ; return x ^ aqlparse.l:175:1: note: in expansion of macro 'token' [\@\$\;\:\.\(\)\[\]\+\-\*\/\%\,\_\|] token(yytext[0]) ; ^~~~~ In file included from aqlparse.y:335: lex.yy.c:1464:10: warning: implicit declaration of function 'yywrap'; did you mean 'yyfree'? [-Wimplicit-function-declaration] if ( yywrap( ) ) ^~~~~~ yyfree In file included from aqlparse.y:335: aqlparse.l: At top level: aqlparse.l:218:6: warning: conflicting types for 'yyerror' void yyerror (char *s) ^~~~~~~ y.tab.c:2225:7: note: previous implicit declaration of 'yyerror' was here In file included from aqlparse.y:335: lex.yy.c:1769:16: warning: 'input' defined but not used [-Wunused-function] static int input (void) ^~~~~ lex.yy.c:1722:17: warning: 'yyunput' defined but not used [-Wunused-function] static void yyunput (int c, char * yy_bp ) ^~~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o aqlcheck.o aqlcheck.c aqlcheck.c: In function 'preLocCheck': aqlcheck.c:1194:23: warning: 'originNode' may be used uninitialized in this function [-Wmaybe-uninitialized] inNode->left = aqlCopyNode (originNode, aql); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aqlcheck.c: In function 'postTableProcess': aqlcheck.c:1621:10: warning: 'tableDefNode' may be used uninitialized in this function [-Wmaybe-uninitialized] if (numberOfTableColumns(tableDefNode, aql) != 1) ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o aqlrun.o aqlrun.c aqlrun.c: In function 'evalExpr': aqlrun.c:3170:18: warning: comparison between 'BOOL' {aka 'enum '} and 'enum ' [-Wenum-compare] if (isValueLeft == NULLVAL || isValueRight == NULLVAL || ^~ aqlrun.c:3170:45: warning: comparison between 'BOOL' {aka 'enum '} and 'enum ' [-Wenum-compare] if (isValueLeft == NULLVAL || isValueRight == NULLVAL || ^~ aqlrun.c:3171:18: warning: comparison between 'BOOL' {aka 'enum '} and 'enum ' [-Wenum-compare] isValueLeft == FUZZYVAL || isValueRight == FUZZYVAL) ^~ aqlrun.c:3171:46: warning: comparison between 'BOOL' {aka 'enum '} and 'enum ' [-Wenum-compare] isValueLeft == FUZZYVAL || isValueRight == FUZZYVAL) ^~ aqlrun.c:3174:22: warning: comparison between 'BOOL' {aka 'enum '} and 'enum ' [-Wenum-compare] if (isValueLeft == NULLVAL || isValueRight == NULLVAL) ^~ aqlrun.c:3174:49: warning: comparison between 'BOOL' {aka 'enum '} and 'enum ' [-Wenum-compare] if (isValueLeft == NULLVAL || isValueRight == NULLVAL) ^~ aqlrun.c:3195:26: warning: comparison between 'BOOL' {aka 'enum '} and 'enum ' [-Wenum-compare] isValueRight == KNOWNVAL ? TRUE : FALSE); /* non-booleans are TRUE if non-null */ ^~ aqlrun.c:3199:25: warning: comparison between 'BOOL' {aka 'enum '} and 'enum ' [-Wenum-compare] isValueLeft == KNOWNVAL ? TRUE : FALSE, /* non-booleans are TRUE if non-null */ ^~ In file included from ../wh/regular.h:566, from ../wh/acedb.h:50, from aqlrun.c:92: ../wh/array.h:100:51: warning: 'last' may be used uninitialized in this function [-Wmaybe-uninitialized] #define arr(ar,i,type) ((*(type*)((ar)->base + (i)*(ar)->size))) ^ aqlrun.c:3050:21: note: 'last' was declared here int first = -1, last, rowCount; ^~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o aqlerror.o aqlerror.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o aqldebug.o aqldebug.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o keysetdump.o keysetdump.c keysetdump.c: In function 'keySetParse': keysetdump.c:281:19: warning: variable 'result' set but not used [-Wunused-but-set-variable] ParseFuncReturn result ; ^~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o lexsubs4.o lexsubs4.c lexsubs4.c: In function 'lexiread': lexsubs4.c:528:26: warning: variable 'lx2' set but not used [-Wunused-but-set-variable] register LEXI1* lxi1, *lx2 ; ^~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o lexalpha.o lexalpha.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o disknew.o disknew.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o blocksub.o blocksub.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o objcache.o objcache.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o idacedb.o idacedb.c idacedb.c: In function 'idaAddName': idacedb.c:317:7: warning: the address of 'name' will always evaluate as 'true' [-Waddress] if (!name || !*name || ^ idacedb.c:317:16: warning: the address of 'name' will always evaluate as 'true' [-Waddress] if (!name || !*name || ^ idacedb.c: In function 'idControl': idacedb.c:973:13: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if (statusOK (fo, ix)) ^ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o idcurate.o idcurate.c idcurate.c: In function 'idError': idcurate.c:51:10: warning: implicit declaration of function 'idaError'; did you mean 'idError'? [-Wimplicit-function-declaration] { return idaError (ix) ; } ^~~~~~~~ idError idcurate.c: In function 'idKill': idcurate.c:60:10: warning: implicit declaration of function 'idaKill'; did you mean 'idKill'? [-Wimplicit-function-declaration] { return idaKill (ix, domain, id, 0) ; } ^~~~~~~ idKill idcurate.c: In function 'idResurrect': idcurate.c:63:10: warning: implicit declaration of function 'idaResurrect'; did you mean 'idResurrect'? [-Wimplicit-function-declaration] { return idaResurrect (ix, domain, id, 0) ; } ^~~~~~~~~~~~ idResurrect idcurate.c: In function 'idMerge': idcurate.c:66:10: warning: implicit declaration of function 'idaMerge'; did you mean 'idMerge'? [-Wimplicit-function-declaration] { return idaMerge (ix, domain, source, target, 0) ; } ^~~~~~~~ idMerge idcurate.c: In function 'idAddName': idcurate.c:72:10: warning: implicit declaration of function 'idaAddName'; did you mean 'idAddName'? [-Wimplicit-function-declaration] { return idaAddName (ix, domain, id, nameType, name, 0) ; } ^~~~~~~~~~ idAddName idcurate.c: In function 'idRemoveName': idcurate.c:75:10: warning: implicit declaration of function 'idaRemoveName'; did you mean 'idRemoveName'? [-Wimplicit-function-declaration] { return idaRemoveName (ix, domain, id, nameType, name, 0) ; } ^~~~~~~~~~~~~ idRemoveName idcurate.c: In function 'idVersion': idcurate.c:96:10: warning: implicit declaration of function 'idaVersion'; did you mean 'idVersion'? [-Wimplicit-function-declaration] { return idaVersion (ix, domain, id) ; } ^~~~~~~~~~ idVersion idcurate.c: In function 'idLive': idcurate.c:99:10: warning: implicit declaration of function 'idaLive'; did you mean 'idLive'? [-Wimplicit-function-declaration] { return idaLive (ix, domain, id) ; } ^~~~~~~ idLive idcurate.c: In function 'idExists': idcurate.c:108:10: warning: implicit declaration of function 'idaExists'; did you mean 'idExists'? [-Wimplicit-function-declaration] { return idaExists (ix, domain, id) ; } ^~~~~~~~~ idExists idcurate.c: In function 'idCreateDomain': idcurate.c:117:10: warning: implicit declaration of function 'idaCreateDomain'; did you mean 'idCreateDomain'? [-Wimplicit-function-declaration] { return idaCreateDomain (ix, domain) ; } ^~~~~~~~~~~~~~~ idCreateDomain idcurate.c: In function 'idSetTemplate': idcurate.c:120:10: warning: implicit declaration of function 'idaSetTemplate'; did you mean 'idSetTemplate'? [-Wimplicit-function-declaration] { return idaSetTemplate (ix, domain, template) ; } ^~~~~~~~~~~~~~ idSetTemplate idcurate.c: In function 'idAddNameType': idcurate.c:124:10: warning: implicit declaration of function 'idaAddNameType'; did you mean 'idAddNameType'? [-Wimplicit-function-declaration] { return idaAddNameType (ix, domain, isUnique, isPrimary) ; } ^~~~~~~~~~~~~~ idAddNameType gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o bs2block.o bs2block.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o adisk.o adisk.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o acache.o acache.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o bsubs.o bsubs.c bsubs.c: In function 'Binit': bsubs.c:104:7: warning: 'memset' used with constant zero length parameter; this could be due to transposed parameters [-Wmemset-transposed-args] memset (&Bnull, BLOC_SIZE, 0) ; ^~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o bstree.o bstree.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o bstools.o bstools.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o keyset.o keyset.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o bsdumps.o bsdumps.c bsdumps.c: In function 'bsAceDumpCell': bsdumps.c:202:9: warning: suggest explicit braces to avoid ambiguous 'else' [-Wdangling-else] if (dumpTimeStamps || (bst->size & DUMP_FLAG)) ^ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o nicedump.o nicedump.c nicedump.c: In function 'niceBSXML': nicedump.c:640:6: warning: variable 'bs_down' set but not used [-Wunused-but-set-variable] BS bs_down ; ^~~~~~~ nicedump.c: In function 'niceTextXMLSchema': nicedump.c:956:14: warning: unused variable 'my_name' [-Wunused-variable] char *my_name = name((bs->right)->key) ; ^~~~~~~ nicedump.c:895:9: warning: variable 'debug' set but not used [-Wunused-but-set-variable] char *debug ; ^~~~~ At top level: nicedump.c:103:13: warning: 'debug' defined but not used [-Wunused-variable] static BOOL debug = FALSE ; ^~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o asubs.o asubs.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o bssubs.o bssubs.c bssubs.c: In function 'bsAddData': bssubs.c:1440:20: warning: null argument where non-null required (argument 1) [-Wnonnull] { if (!strcmp (bsText(bs),(char*)xp)) ^~~~~~ bssubs.c: In function 'bsSubFuse': bssubs.c:2478:7: warning: this 'for' clause does not guard... [-Wmisleading-indentation] { for (bs = bs->right ; ^~~ bssubs.c:2481:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' bs->down = top ; ^~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o check.o check.c check.c: In function 'checkData': check.c:94:9: warning: variable 'x' set but not used [-Wunused-but-set-variable] float x ; ^ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o dnasubs.o dnasubs.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o dnacode.o dnacode.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o peptide.o peptide.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o matchtable.o matchtable.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o basepad.o basepad.c basepad.c:152:13: warning: 'depadSequence' defined but not used [-Wunused-function] static int *depadSequence (KEY seq, BOOL defragment) ^~~~~~~~~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o smap.o smap.c smap.c: In function 'sMapReMap': smap.c:927:9: warning: unused variable 'reverse_local_map' [-Wunused-variable] Array reverse_local_map, parent_map ; ^~~~~~~~~~~~~~~~~ At top level: smap.c:2466:19: warning: 'clipLocalMap' defined but not used [-Wunused-function] static SMapStatus clipLocalMap(int p_start, int p_end, Array local_map, Strand strand, ^~~~~~~~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o class.o class.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o sysclass.o sysclass.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o tags.o tags.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o model.o model.c model.c: In function 'getNewModels': model.c:733:3: warning: implicit declaration of function 'lexAlphaClassList'; did you mean 'lexAlphaClear'? [-Wimplicit-function-declaration] lexAlphaClassList (TRUE) ; /* re alpha order class names */ ^~~~~~~~~~~~~~~~~ lexAlphaClear model.c:600:18: warning: variable 'oldKey' set but not used [-Wunused-but-set-variable] KEY key = 0, oldKey = 0 ; ^~~~~~ At top level: model.c:488:13: warning: 'treeCompare' defined but not used [-Wunused-function] static BOOL treeCompare(BS one, BS two) ^~~~~~~~~~~ model.c: In function 'getNewModels': model.c:642:9: warning: 'level' may be used uninitialized in this function [-Wmaybe-uninitialized] if (level) ^ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o longtext.o longtext.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o quovadis.o quovadis.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o picksubs.o picksubs.c picksubs.c: In function 'pickGetClassProperties': picksubs.c:297:10: warning: type defaults to 'int' in declaration of 'displayOK' [-Wimplicit-int] static displayOK = FALSE; ^~~~~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o alignment.o alignment.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o logsubs.o logsubs.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o sigsubs.o sigsubs.c sigsubs.c: In function 'getSignalText': sigsubs.c:486:28: warning: initialization of 'char **' from incompatible pointer type 'const char * const*' [-Wincompatible-pointer-types] char **signal_textlist = &(_sys_siglist[0]) ; ^ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o prefsubs.o prefsubs.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o status.o status.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o bindex.o bindex.c bindex.c: In function 'bIndexNewModels': bindex.c:743:16: warning: variable 'kk' set but not used [-Wunused-but-set-variable] int i, nBix, kk, nIndexedClasses ; ^~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o acelib.o acelib.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o table.o table.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o apputils.o apputils.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o acinside.o acinside.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o actable.o actable.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -DNON_GRAPHIC -c parse.c -o parse.ng.o gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -DNON_GRAPHIC -c dump.c -o dump.ng.o dump.c: In function 'dumpKey2': dump.c:253:20: warning: implicit declaration of function 'dnaDumpKeyCstyle'; did you mean 'javaDumpKeySet'? [-Wimplicit-function-declaration] { dnaDumpKeyCstyle (dump_out, key); } ^~~~~~~~~~~~~~~~ javaDumpKeySet dump.c:255:20: warning: implicit declaration of function 'peptideDumpKeyCstyle' [-Wimplicit-function-declaration] { peptideDumpKeyCstyle (dump_out, key); } ^~~~~~~~~~~~~~~~~~~~ dump.c: In function 'dumpDoReadAll': dump.c:699:8: warning: variable 'dump_stats' set but not used [-Wunused-but-set-variable] BOOL dump_stats = FALSE ; ^~~~~~~~~~ dump.c: In function 'dumpAll': dump.c:1007:24: warning: 'sprintf' may write a terminating nul past the end of the destination [-Wformat-overflow=] sprintf (dumpDir,"%s/", directory); ^ dump.c:1007:3: note: 'sprintf' output between 2 and 4097 bytes into a destination of size 4096 sprintf (dumpDir,"%s/", directory); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -DNON_GRAPHIC -c biblio.c -o biblio.ng.o ar rlu libace.a command.o commandmenu.o session.o dbpath.o aceutils.o banner.o queryexe.o tabledefsubs.o tabledefio.o flag.o aql.o aqlparse.o aqlcheck.o aqlrun.o aqlerror.o aqldebug.o keysetdump.o lexsubs4.o lexalpha.o disknew.o blocksub.o objcache.o idacedb.o idcurate.o bs2block.o adisk.o acache.o bsubs.o bstree.o bstools.o keyset.o bsdumps.o nicedump.o asubs.o bssubs.o check.o dnasubs.o dnacode.o peptide.o matchtable.o basepad.o smap.o class.o sysclass.o tags.o model.o longtext.o quovadis.o picksubs.o alignment.o logsubs.o sigsubs.o prefsubs.o status.o bindex.o acelib.o table.o apputils.o acinside.o actable.o parse.ng.o dump.ng.o biblio.ng.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libace.a gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o metadata.o metadata.c metadata.c: In function 'main': metadata.c:190:5: warning: implicit declaration of function 'aceInit'; did you mean 'pickInit'? [-Wimplicit-function-declaration] aceInit(argv[1]); ^~~~~~~ pickInit gcc -g -Wl,-z,relro -Wl,-z,now -o metacheck metadata.o -L. -lace -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 /usr/bin/ld: ./libfree.a(filsubs.o): in function `filTmpOpenWithSuffix': ./bin.LINUX_4/filsubs.c:588: warning: the use of `tempnam' is dangerous, better use `mkstemp' make[3]: Leaving directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' making homonym for LINUX_4 make[3]: Entering directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o homonym.o homonym.c homonym.c: In function 'readRules': homonym.c:127:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if(cp = freewordcut("\n",&cutter)) ^~ homonym.c: At top level: homonym.c:164:6: warning: return type of 'main' is not 'int' [-Wmain] void main (int argc, char **arg) ^~~~ gcc -g -Wl,-z,relro -Wl,-z,now -o homonym homonym.o -L. -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 /usr/bin/ld: ./libfree.a(filsubs.o): in function `filTmpOpenWithSuffix': ./bin.LINUX_4/filsubs.c:588: warning: the use of `tempnam' is dangerous, better use `mkstemp' make[3]: Leaving directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' making tagcount for LINUX_4 make[3]: Entering directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c tagcount.c gcc -g -Wl,-z,relro -Wl,-z,now -o tagcount tagcount.o -L. -lace -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 /usr/bin/ld: ./libfree.a(filsubs.o): in function `filTmpOpenWithSuffix': ./bin.LINUX_4/filsubs.c:588: warning: the use of `tempnam' is dangerous, better use `mkstemp' make[3]: Leaving directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' making blixem for LINUX_4 make[3]: Entering directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphgtk.o graphgtk.c graphgtk.c: In function 'installRemoteAtoms': graphgtk.c:1169:9: warning: pointer targets in passing argument 6 of 'gdk_property_change' differ in signedness [-Wpointer-sign] versionString, ^~~~~~~~~~~~~ In file included from /usr/include/gtk-2.0/gdk/gdk.h:50, from /usr/include/gtk-2.0/gtk/gtk.h:32, from graphgtk.c:37: /usr/include/gtk-2.0/gdk/gdkproperty.h:60:10: note: expected 'const guchar *' {aka 'const unsigned char *'} but argument is of type 'char *' void gdk_property_change (GdkWindow *window, ^~~~~~~~~~~~~~~~~~~ graphgtk.c:1177:9: warning: pointer targets in passing argument 6 of 'gdk_property_change' differ in signedness [-Wpointer-sign] appName, ^~~~~~~ In file included from /usr/include/gtk-2.0/gdk/gdk.h:50, from /usr/include/gtk-2.0/gtk/gtk.h:32, from graphgtk.c:37: /usr/include/gtk-2.0/gdk/gdkproperty.h:60:10: note: expected 'const guchar *' {aka 'const unsigned char *'} but argument is of type 'char *' void gdk_property_change (GdkWindow *window, ^~~~~~~~~~~~~~~~~~~ graphgtk.c: In function 'keyboardEvent': graphgtk.c:1183:8: warning: unused variable 'result' [-Wunused-variable] gint result = TRUE ; ^~~~~~ graphgtk.c: In function 'changeCursor': graphgtk.c:1437:58: warning: pointer targets in passing argument 2 of 'gdk_bitmap_create_from_data' differ in signedness [-Wpointer-sign] GdkPixmap *bm = gdk_bitmap_create_from_data (NULL, nenty_bits, ^~~~~~~~~~ In file included from /usr/include/gtk-2.0/gdk/gdk.h:49, from /usr/include/gtk-2.0/gtk/gtk.h:32, from graphgtk.c:37: /usr/include/gtk-2.0/gdk/gdkpixmap.h:74:12: note: expected 'const gchar *' {aka 'const char *'} but argument is of type 'unsigned char *' GdkBitmap* gdk_bitmap_create_from_data (GdkDrawable *drawable, ^~~~~~~~~~~~~~~~~~~~~~~~~~~ graphgtk.c: In function 'selection_received': graphgtk.c:1705:44: warning: pointer targets in passing argument 2 of 'graphCBPaste' differ in signedness [-Wpointer-sign] graphCBPaste(dev->graph, selection_data->data); ~~~~~~~~~~~~~~^~~~~~ In file included from graphgtk.c:54: ../w2/graphdev.h:348:6: note: expected 'char *' but argument is of type 'guchar *' {aka 'unsigned char *'} void graphCBPaste(GraphPtr graph, char *text); ^~~~~~~~~~~~ graphgtk.c: In function 'keyboardEvent': graphgtk.c:1185:7: warning: 'kval' may be used uninitialized in this function [-Wmaybe-uninitialized] int kval ; ^~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphgdk.o graphgdk.c graphgdk.c: In function 'graphGtkSetGreyMap': graphgdk.c:378:10: warning: type defaults to 'int' in declaration of 'usingPrivate' [-Wimplicit-int] static usingPrivate = FALSE; ^~~~~~~~~~~~ graphgdk.c: In function 'dev2GdkLineStyle': graphgdk.c:952:10: warning: 'gdk_style' may be used uninitialized in this function [-Wmaybe-uninitialized] return gdk_style ; ^~~~~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphgdkremote.o graphgdkremote.c graphgdkremote.c: In function 'devGtkWebBrowser': graphgdkremote.c:280:8: warning: variable 'result' set but not used [-Wunused-but-set-variable] BOOL result = FALSE ; ^~~~~~ In file included from graphgdkremote.c:106: At top level: ../w2/vroot.h:65:1: warning: 'VirtualRootWindowOfScreen' defined but not used [-Wunused-function] VirtualRootWindowOfScreen(screen) ^~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o gexhelp.o gexhelp.c gexhelp.c:88:5: warning: initialization of 'void (*)(struct _MenuItemStruct *)' from incompatible pointer type 'void (*)(void)' [-Wincompatible-pointer-types] { helpButtonGoBack, "Back"}, ^~~~~~~~~~~~~~~~ gexhelp.c:88:5: note: (near initialization for 'helpViewMenu[0].f') gexhelp.c:89:5: warning: initialization of 'void (*)(struct _MenuItemStruct *)' from incompatible pointer type 'void (*)(void)' [-Wincompatible-pointer-types] { helpButtonGoForward, "Forward"}, ^~~~~~~~~~~~~~~~~~~ gexhelp.c:89:5: note: (near initialization for 'helpViewMenu[1].f') gexhelp.c: In function 'gexHtmlViewer': gexhelp.c:253:2: warning: implicit declaration of function 'graphMenuBar'; did you mean 'graphMenu'? [-Wimplicit-function-declaration] graphMenuBar(menuBar); ^~~~~~~~~~~~ graphMenu gexhelp.c: In function 'printSection': gexhelp.c:592:5: warning: variable 'MODE_HEADER' set but not used [-Wunused-but-set-variable] MODE_HEADER=FALSE, ^~~~~~~~~~~ gexhelp.c:587:22: warning: variable 'hrefCp' set but not used [-Wunused-but-set-variable] char *cp, *start, *hrefCp ; ^~~~~~ gexhelp.c:646:4: warning: 'oldFontHeight' may be used uninitialized in this function [-Wmaybe-uninitialized] graphTextHeight (oldFontHeight) ; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gexhelp.c:644:4: warning: 'oldFont' may be used uninitialized in this function [-Wmaybe-uninitialized] graphTextFormat (oldFont) ; ^~~~~~~~~~~~~~~~~~~~~~~~~ gexhelp.c: In function 'gexHtmlViewer': gexhelp.c:177:3: warning: 'strncpy' specified bound 4096 equals destination size [-Wstringop-truncation] strncpy (currHelpFilename, helpFilename, MAXPATHLEN); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o gexramptool.o gexramptool.c gexramptool.c: In function 'colorDragSlider': gexramptool.c:265:2: warning: this 'else' clause does not guard... [-Wmisleading-indentation] else ^~~~ gexramptool.c:267:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' if (x < BORDER) x = BORDER+1; ^~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o gex.o gex.c gex.c: In function 'ButtonPressCallback': gex.c:1870:19: warning: variable 'accel_group' set but not used [-Wunused-but-set-variable] GtkAccelGroup *accel_group; ^~~~~~~~~~~ At top level: gex.c:872:13: warning: 'ace_file_selection_dir_button' defined but not used [-Wunused-function] static void ace_file_selection_dir_button (GtkWidget *widget, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ar rlu libgex.a graphgtk.o graphgdk.o graphgdkremote.o gexhelp.o gexramptool.o gex.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libgex.a gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphcon.o graphcon.c graphcon.c: In function 'graphWindowSize': graphcon.c:858:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (wx) *wx = x ; if (ww) *ww = width/(float)screenx ; ^~ graphcon.c:858:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (wx) *wx = x ; if (ww) *ww = width/(float)screenx ; ^~ graphcon.c:859:7: warning: this 'if' clause does not guard... [-Wmisleading-indentation] if (wy) *wy = y ; if (wh) *wh = height/(float)screeny ; ^~ graphcon.c:859:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' if (wy) *wy = y ; if (wh) *wh = height/(float)screeny ; ^~ In file included from graphcon.c:74: At top level: ../wh/version.h:133:20: warning: 'ut_copyright_string' defined but not used [-Wunused-variable] static const char *ut_copyright_string = \ ^~~~~~~~~~~~~~~~~~~ graphcon.c:94:1: note: in expansion of macro 'UT_COPYRIGHT_STRING' UT_COPYRIGHT_STRING(GRAPH_TITLE, GRAPH_VERSION, GRAPH_RELEASE, GRAPH_UPDATE, GRAPH_DESC) ^~~~~~~~~~~~~~~~~~~ graphcon.c: In function 'gGetGraphDevEventType': graphcon.c:1363:10: warning: 'graphdev_event' may be used uninitialized in this function [-Wmaybe-uninitialized] return graphdev_event ; ^~~~~~~~~~~~~~ graphcon.c: In function 'gGetGraphDevGraphType': graphcon.c:1386:10: warning: 'graphdev_type' may be used uninitialized in this function [-Wmaybe-uninitialized] return graphdev_type ; ^~~~~~~~~~~~~ graphcon.c: In function 'gGetGraphDevFontFormat': graphcon.c:1402:10: warning: 'graphdev_format' may be used uninitialized in this function [-Wmaybe-uninitialized] return graphdev_format ; ^~~~~~~~~~~~~~~ graphcon.c: In function 'gGetGraphDevLineStyle': graphcon.c:1417:10: warning: 'graphdev_style' may be used uninitialized in this function [-Wmaybe-uninitialized] return graphdev_style ; ^~~~~~~~~~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphsub.o graphsub.c graphsub.c: In function 'drawBox': graphsub.c:354:17: warning: unused variable 'uintp' [-Wunused-variable] unsigned int *uintp = stackNext (gStk, unsigned int*) ; ^~~~~ graphsub.c:289:18: warning: variable 'utext' set but not used [-Wunused-but-set-variable] unsigned char *utext; ^~~~~ graphsub.c: In function 'graphBoxShift': graphsub.c:2233:20: warning: unused variable 'uintp' [-Wunused-variable] { unsigned int *uintp = stackNext (gStk, unsigned int*) ; ^~~~~ graphsub.c:2280:10: warning: variable 'gim' set but not used [-Wunused-but-set-variable] { void *gim = stackNext (gStk,void*) ; ^~~ graphsub.c:2193:18: warning: variable 'utext' set but not used [-Wunused-but-set-variable] unsigned char *utext; ^~~~~ graphsub.c:2192:9: warning: variable 'text' set but not used [-Wunused-but-set-variable] char* text ; ^~~~ graphsub.c:2191:9: warning: variable 't' set but not used [-Wunused-but-set-variable] float t ; ^ graphsub.c: In function 'drawBox': graphsub.c:687:8: warning: 'newColor' may be used uninitialized in this function [-Wmaybe-uninitialized] if (newColor != old) ^ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphps.o graphps.c In file included from ../wh/regular.h:566, from graphps.c:49: graphps.c: In function 'psDrawBox': ../wh/array.h:222:54: warning: operation on 'ps->graph->stack->pos' may be undefined [-Wsequence-point] #define stackNext(stk,type) (*((type*)( ((stk)->pos += STACK_ALIGNMENT ) - \ ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ graphps.c:399:5: note: in expansion of macro 'stackNext' stackNext (ps->graph->stack, float)) ; ^~~~~~~~~ ../wh/array.h:222:54: warning: operation on 'ps->graph->stack->pos' may be undefined [-Wsequence-point] #define stackNext(stk,type) (*((type*)( ((stk)->pos += STACK_ALIGNMENT ) - \ ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ graphps.c:406:9: note: in expansion of macro 'stackNext' stackNext (ps->graph->stack, float)) ; ^~~~~~~~~ graphps.c:609:14: warning: variable 'gim' set but not used [-Wunused-but-set-variable] void* gim = stackNext (ps->graph->stack, void*) ; ^~~ graphps.c: In function 'graphPSdefaults': graphps.c:787:19: warning: 'pageHeight' may be used uninitialized in this function [-Wmaybe-uninitialized] yfac = .996 * pageHeight / h ; ~~~~~^~~~~~~~~~~~ graphps.c:786:19: warning: 'pageWidth' may be used uninitialized in this function [-Wmaybe-uninitialized] xfac = .996 * pageWidth / w ; ~~~~~^~~~~~~~~~~ graphps.c: In function 'graphPS': graphps.c:810:20: warning: 'pageHeight' may be used uninitialized in this function [-Wmaybe-uninitialized] float pageWidth, pageHeight; ^~~~~~~~~~ graphps.c:912:11: warning: 'pageWidth' may be used uninitialized in this function [-Wmaybe-uninitialized] err = aceOutPrint(fo, "gsave\n%f %f translate -90 rotate ", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pageWidth, pageHeight) ; ~~~~~~~~~~~~~~~~~~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphgdi.o graphgdi.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphselect.o graphselect.c graphselect.c:49:13: warning: 'popScrolledDraw' declared 'static' but never defined [-Wunused-function] static void popScrolledDraw(FREEOPT *f) ; ^~~~~~~~~~~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphascii.o graphascii.c graphascii.c: In function 'graphASCII': graphascii.c:255:7: warning: variable 'pages' set but not used [-Wunused-but-set-variable] int pages ; ^~~~~ graphascii.c:81:27: warning: 'lenOld' may be used uninitialized in this function [-Wmaybe-uninitialized] { bump->xGapAscii = c->x - lenOld - xOld ; ~~~~~^~~~~~~~ graphascii.c:65:7: note: 'lenOld' was declared here int lenOld, xOld = -1 ; ^~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphprint.o graphprint.c graphprint.c: In function 'copyNameEnd': graphprint.c:575:3: warning: this 'for' clause does not guard... [-Wmisleading-indentation] for (cp = pd->filBuffer; *cp ; ++cp) ; --cp ; ^~~ graphprint.c:575:42: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' for (cp = pd->filBuffer; *cp ; ++cp) ; --cp ; ^~ graphprint.c: In function 'pdInit': graphprint.c:1164:3: warning: 'getwd' is deprecated [-Wdeprecated-declarations] else if (!getwd (result->dirBuffer)) ^~~~ In file included from ../wh/mystdlib.h:238, from ../wh/regular.h:51, from graphprint.c:45: /usr/include/unistd.h:525:14: note: declared here extern char *getwd (char *__buf) ^~~~~ graphprint.c: In function 'pdDraw': graphprint.c:961:7: warning: 'ending' may be used uninitialized in this function [-Wmaybe-uninitialized] sprintf (pd->copyBuffer, "%s/%s.%s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pd->dirBuffer, pd->filBuffer, ending) ; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphprint.c:904:23: warning: 'box' may be used uninitialized in this function [-Wmaybe-uninitialized] pd->firstBox = box + 1 - n ; ~~~~^~~ graphprint.c: In function 'copyNameEnd': graphprint.c:606:5: warning: 'ending' may be used uninitialized in this function [-Wmaybe-uninitialized] sprintf (pd->copyBuffer, "%s%s.%s", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pd->dirBuffer, pd->filBuffer, ending) ; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ graphprint.c: In function 'fileButton': graphprint.c:490:13: warning: 'mode' may be used uninitialized in this function [-Wmaybe-uninitialized] tmp_fil = filqueryopen (pd->dirBuffer, pd->filBuffer, ending, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mode, "Print File") ; ~~~~~~~~~~~~~~~~~~~ graphprint.c:490:13: warning: 'ending' may be used uninitialized in this function [-Wmaybe-uninitialized] graphprint.c: In function 'graphPrint': graphprint.c:1276:3: warning: 'ending' may be used uninitialized in this function [-Wmaybe-uninitialized] sprintf (lastPd->copyBuffer, "%s/%s.%s", lastPd->dirBuffer, lastPd->filBuffer, ending) ; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o filquery.o filquery.c filquery.c: In function 'localQueryOpen': filquery.c:516:11: warning: the address of 'path' will always evaluate as 'true' [-Waddress] if (!path || path[strlen(path)-1] != '/') /* avoid // */ ^ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphgif.o graphgif.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o colcontrol.o colcontrol.c colcontrol.c: In function 'controlSelectBox': colcontrol.c:1106:6: warning: type of 'box' defaults to 'int' [-Wimplicit-int] void controlSelectBox(box) ^~~~~~~~~~~~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o viewedit.o viewedit.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o chronodisp.o chronodisp.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphcolour.o graphcolour.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphAcedbInterface.o graphAcedbInterface.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphremote.o graphremote.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphmesglist.o graphmesglist.c graphmesglist.c:82:13: warning: 'mesgDestroy' declared 'static' but never defined [-Wunused-function] static void mesgDestroy(void) ; ^~~~~~~~~~~ graphmesglist.c: In function 'mesgListDestroy': graphmesglist.c:339:6: warning: 'destroy_cb' may be used uninitialized in this function [-Wmaybe-uninitialized] (*destroy_cb)() ; ~^~~~~~~~~~~~~~ ar rlu libgraph.a graphcon.o graphsub.o graphps.o graphgdi.o graphselect.o graphascii.o graphprint.o filquery.o graphgif.o colcontrol.o viewedit.o chronodisp.o graphcolour.o graphAcedbInterface.o graphremote.o graphmesglist.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libgraph.a gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o libgd.o libgd.c libgd.c: In function 'gdImageCreateFromGif': libgd.c:1640:12: warning: variable 'AspectRatio' set but not used [-Wunused-but-set-variable] int AspectRatio; ^~~~~~~~~~~ libgd.c:1639:12: warning: variable 'Background' set but not used [-Wunused-but-set-variable] int Background; ^~~~~~~~~~ libgd.c:1638:12: warning: variable 'ColorResolution' set but not used [-Wunused-but-set-variable] int ColorResolution; ^~~~~~~~~~~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o gdfont6x9.o gdfont6x9.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o gdfont8x13.o gdfont8x13.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o gdfont8x13bold.o gdfont8x13bold.c ar rlu libgd.a libgd.o gdfont6x9.o gdfont8x13.o gdfont8x13bold.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libgd.a gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o blixem.o blxview.c blxview.c: In function 'gotoMatch': blxview.c:600:16: warning: variable 'closest' set but not used [-Wunused-but-set-variable] MSP *msp, *closest; ^~~~~~~ blxview.c: In function 'inRange': blxview.c:1982:12: warning: type of 'pos' defaults to 'int' [-Wimplicit-int] static int inRange(pos, start, end) ^~~~~~~ blxview.c:1982:12: warning: type of 'start' defaults to 'int' [-Wimplicit-int] blxview.c:1982:12: warning: type of 'end' defaults to 'int' [-Wimplicit-int] blxview.c: In function 'makeButtonBar': blxview.c:3535:16: warning: variable 'item' set but not used [-Wunused-but-set-variable] GtkToolItem *item ; ^~~~ blxview.c: In function 'blviewRedraw': blxview.c:2576:4: warning: 'DNAline' may be used uninitialized in this function [-Wmaybe-uninitialized] graphText(get3rd_base(dispstart, dispstart + plusmin*(displen-1), q), ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ alignstart, DNAline++); ~~~~~~~~~~~~~~~~~~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o blxmain.o blxmain.c In file included from ../w9/blixem_.h:34, from blxmain.c:37: ../wh/version.h:133:20: warning: 'ut_copyright_string' defined but not used [-Wunused-variable] static const char *ut_copyright_string = \ ^~~~~~~~~~~~~~~~~~~ blxmain.c:43:1: note: in expansion of macro 'UT_COPYRIGHT_STRING' UT_COPYRIGHT_STRING(BLIXEM_TITLE, BLIXEM_VERSION, BLIXEM_RELEASE, BLIXEM_UPDATE, BLIXEM_DESC) ^~~~~~~~~~~~~~~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o blxparser.o blxparser.c blxparser.c: In function 'parseFS': blxparser.c:868:4: warning: 'seqlen' may be used uninitialized in this function [-Wmaybe-uninitialized] for (i = 0; i < seqlen; i++) ^~~ blxparser.c:362:15: warning: 'slen' may be used uninitialized in this function [-Wmaybe-uninitialized] else if (qlen < slen) ^ blxparser.c:262:18: note: 'slen' was declared here int i, qlen, slen; ^~~~ blxparser.c:362:15: warning: 'qlen' may be used uninitialized in this function [-Wmaybe-uninitialized] else if (qlen < slen) ^ blxparser.c:262:12: note: 'qlen' was declared here int i, qlen, slen; ^~~~ blxparser.c:326:8: warning: 'last' may be used uninitialized in this function [-Wmaybe-uninitialized] strcat(msp->sname, last); ^~~~~~~~~~~~~~~~~~~~~~~~ blxparser.c:317:21: note: 'last' was declared here char *db=p, *last; ^~~~ blxparser.c:529:8: warning: 'msp' may be used uninitialized in this function [-Wmaybe-uninitialized] MSP *msp; ^~~ blxparser.c: In function 'pickMatch': blxparser.c:1013:20: warning: 'cs' may be used uninitialized in this function [-Wmaybe-uninitialized] t=ts; c=cs+1; ~^~~~~ blxparser.c:1014:8: warning: 'ts' may be used uninitialized in this function [-Wmaybe-uninitialized] if(ts == tp) s = 0 ; ^ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o translate.o translate.c In file included from translate.c:34: ../wh/iupac.h:34:22: warning: missing braces around initializer [-Wmissing-braces] int PAM120[23][23] = { ^ ../wh/iupac.h:36:3: 3, -3, -1, 0, -3, -1, 0, 1, -3, -1, -3, -2, -2, -4, 1, 1, 1, -7, -4, 0, 1, 0, -1, { } -3, 6, -1, -3, -4, 1, -3, -4, 1, -2, -4, 2, -1, -5, -1, -1, -2, 1, -5, -3, -1, 0, -1, { } -1, -1, 4, 2, -5, 0, 1, 0, 2, -2, -4, 1, -3, -4, -2, 1, 0, -4, -2, -3, 4, 1, -1, { } 0, -3, 2, 5, -7, 1, 3, 0, 0, -3, -5, -1, -4, -7, -3, 0, -1, -8, -5, -3, 5, 3, -1, { } -3, -4, -5, -7, 9, -7, -7, -4, -4, -3, -7, -7, -6, -6, -4, 0, -3, -8, -1, -3, -4, -6, -1, { } -1, 1, 0, 1, -7, 6, 2, -3, 3, -3, -2, 0, -1, -6, 0, -2, -2, -6, -5, -3, 1, 5, -1, { } 0, -3, 1, 3, -7, 2, 5, -1, -1, -3, -4, -1, -3, -7, -2, -1, -2, -8, -5, -3, 3, 5, -1, { } 1, -4, 0, 0, -4, -3, -1, 5, -4, -4, -5, -3, -4, -5, -2, 1, -1, -8, -6, -2, 1, -1, -1, { } -3, 1, 2, 0, -4, 3, -1, -4, 7, -4, -3, -2, -4, -3, -1, -2, -3, -3, -1, -3, 2, 2, -1, { } -1, -2, -2, -3, -3, -3, -3, -4, -4, 6, 1, -3, 1, 0, -3, -2, 0, -6, -2, 3, -2, -2, -1, { } -3, -4, -4, -5, -7, -2, -4, -5, -3, 1, 5, -4, 3, 0, -3, -4, -3, -3, -2, 1, -3, -2, -1, { } -2, 2, 1, -1, -7, 0, -1, -3, -2, -3, -4, 5, 0, -7, -2, -1, -1, -5, -5, -4, 1, 0, -1, { } -2, -1, -3, -4, -6, -1, -3, -4, -4, 1, 3, 0, 8, -1, -3, -2, -1, -6, -4, 1, -3, -1, -1, { } -4, -5, -4, -7, -6, -6, -7, -5, -3, 0, 0, -7, -1, 8, -5, -3, -4, -1, 4, -3, -4, -5, -1, { } 1, -1, -2, -3, -4, 0, -2, -2, -1, -3, -3, -2, -3, -5, 6, 1, -1, -7, -6, -2, -1, 0, -1, { } 1, -1, 1, 0, 0, -2, -1, 1, -2, -2, -4, -1, -2, -3, 1, 3, 2, -2, -3, -2, 1, 0, -1, { } 1, -2, 0, -1, -3, -2, -2, -1, -3, 0, -3, -1, -1, -4, -1, 2, 4, -6, -3, 0, 1, -1, -1, { } -7, 1, -4, -8, -8, -6, -8, -8, -3, -6, -3, -5, -6, -1, -7, -2, -6, 12, -2, -8, -5, -6, -1, { } -4, -5, -2, -5, -1, -5, -5, -6, -1, -2, -2, -5, -4, 4, -6, -3, -3, -2, 8, -3, -2, -4, -1, { } 0, -3, -3, -3, -3, -3, -3, -2, -3, 3, 1, -4, 1, -3, -2, -2, 0, -8, -3, 5, -2, -2, -1, { } 1, -1, 4, 5, -4, 1, 3, 1, 2, -2, -3, 1, -3, -4, -1, 1, 1, -5, -2, -2, 6, 4, -1, { } 0, 0, 1, 3, -6, 5, 5, -1, 2, -2, -2, 0, -1, -5, 0, 0, -1, -6, -4, -2, 4, 6, -1, { } -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1, -1 { }; } ../wh/iupac.h:126:28: warning: missing braces around initializer [-Wmissing-braces] struct iupactype iupac[] = { ^ ../wh/iupac.h:129:3: 'A', 'T', NTA, NTT, { } 'C', 'G', NTC, NTG, { } 'G', 'C', NTG, NTC, { } 'T', 'A', NTT, NTA, { } 'U', 'A', NTU, NTA, { } 'N', 'N', NTN, NTN, { } ' ', ' ', NTGAP, NTGAP, { } 'R', 'Y', NTR, NTY, { } 'Y', 'R', NTY, NTR, { } 'M', 'K', NTM, NTK, { } 'K', 'M', NTK, NTM, { } 'S', 'S', NTS, NTS, { } 'W', 'W', NTW, NTW, { } 'H', 'D', NTH, NTD, { } 'B', 'V', NTB, NTV, { } 'V', 'B', NTV, NTB, { } 'D', 'H', NTD, NTH { }; } gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -g -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o dotter.o dotter.c dotter.c: In function 'savePlot': dotter.c:574:2: warning: variable 'batch' set but not used [-Wunused-but-set-variable] batch=1, ^~~~~ dotter.c: In function 'drawBlastHSPs': dotter.c:1648:2: warning: variable 'strand' set but not used [-Wunused-but-set-variable] strand, *MSPsname; ^~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o dotterKarlin.o dotterKarlin.c dotterKarlin.c: In function 'winsizeFromlambdak': dotterKarlin.c:378:9: warning: array subscript has type 'char' [-Wchar-subscripts] if (tob[qseq[i]] < abetsize ) ^ dotterKarlin.c:380:12: warning: array subscript has type 'char' [-Wchar-subscripts] n1[tob[qseq[i]]]++; ^ dotterKarlin.c:387:9: warning: array subscript has type 'char' [-Wchar-subscripts] if (tob[sseq[i]] != NA ) { ^ dotterKarlin.c:388:12: warning: array subscript has type 'char' [-Wchar-subscripts] n2[tob[sseq[i]]]++; ^ gcc -g -Wl,-z,relro -Wl,-z,now -o blixem blixem.o blxmain.o blxparser.o dotter.o dotterKarlin.o \ translate.o -L. -lgex -lgraph -lgd -lfree `../w3rdparty/acedb-config glib-2.0 gtk+-2.0` -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 /usr/bin/ld: ./libgraph.a(graphascii.o): in function `graphASCII': ./bin.LINUX_4/graphascii.c:264: warning: the use of `tempnam' is dangerous, better use `mkstemp' /usr/bin/ld: ./libgraph.a(graphprint.o): in function `pdInit': ./bin.LINUX_4/graphprint.c:1164: warning: the `getwd' function is dangerous and should not be used. make[3]: Leaving directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' making blixelect for LINUX_4 make[3]: Entering directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o blxselect.o blxselect.c blxselect.c: In function 'callBlixem': blxselect.c:107:13: warning: type of 'box' defaults to 'int' [-Wimplicit-int] static void callBlixem(box) ^~~~~~~~~~ blxselect.c:124:5: warning: 'strncpy' forming offset [257, 10000] is out of the bounds [0, 256] of object 'qname' with type 'char[256]' [-Warray-bounds] strncpy(qname, name, MAXLINE); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ blxselect.c:46:15: note: 'qname' declared here static char qname[FULLNAMESIZE+1], ^~~~~ gcc -g -Wl,-z,relro -Wl,-z,now -o blixelect blxselect.o blxparser.o blixem.o dotter.o dotterKarlin.o \ translate.o -L. -lgex -lgraph -lgd -lfree `../w3rdparty/acedb-config glib-2.0 gtk+-2.0` -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 /usr/bin/ld: ./libgraph.a(graphascii.o): in function `graphASCII': ./bin.LINUX_4/graphascii.c:264: warning: the use of `tempnam' is dangerous, better use `mkstemp' /usr/bin/ld: ./libgraph.a(graphprint.o): in function `pdInit': ./bin.LINUX_4/graphprint.c:1164: warning: the `getwd' function is dangerous and should not be used. make[3]: Leaving directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' making jade2ace for LINUX_4 make[3]: Entering directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' rpcgen -b -I -K -1 rpcace.x gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -c aceclientlib.c aceclientlib.c: In function 'wakeUp': aceclientlib.c:59:14: warning: variable 'sig' set but not used [-Wunused-but-set-variable] static int sig = 0 ; ^~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o rpcace_clnt.o rpcace_clnt.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o rpcace_xdr.o rpcace_xdr.c rpcace_xdr.c: In function 'xdr_ace_reponse': rpcace_xdr.c:94:20: warning: unused variable 'buf' [-Wunused-variable] register int32_t *buf; ^~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c jade2ace.c jade2ace.c: In function 'doQuery': jade2ace.c:317:21: warning: ' is the superclass for ' directive writing 23 bytes into a region of size between 1 and 512 [-Wformat-overflow=] sprintf(message,"%s is the superclass for %s",superclass,subclass); ^~~~~~~~~~~~~~~~~~~~~~~ jade2ace.c:317:2: note: 'sprintf' output between 24 and 1046 bytes into a destination of size 512 sprintf(message,"%s is the superclass for %s",superclass,subclass); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -Wl,-z,relro -Wl,-z,now -o jade2ace jade2ace.o aceclientlib.o rpcace_clnt.o rpcace_xdr.o -L. -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 /usr/bin/ld: jade2ace.o: in function `doTable': ./bin.LINUX_4/jade2ace.c:372: warning: the use of `tempnam' is dangerous, better use `mkstemp' chmod 755 jade2ace \rm -f netclient ln -s jade2ace netclient make[3]: Leaving directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' making efetch for LINUX_4 make[3]: Entering directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -DMIXDB efetch.c efetch.c: In function 'swissprot': efetch.c:47:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (env = getenv("SWDIR")) strcpy(dbdir, env); ^~~ efetch.c:47:32: warning: implicit declaration of function 'strcpy' [-Wimplicit-function-declaration] if (env = getenv("SWDIR")) strcpy(dbdir, env); ^~~~~~ efetch.c:47:32: warning: incompatible implicit declaration of built-in function 'strcpy' efetch.c:47:32: note: include '' or provide a declaration of 'strcpy' efetch.c:39:1: +#include efetch.c:47:32: if (env = getenv("SWDIR")) strcpy(dbdir, env); ^~~~~~ efetch.c:48:10: warning: incompatible implicit declaration of built-in function 'strcpy' else strcpy(dbdir, DEFAULT_SWDIR); ^~~~~~ efetch.c:48:10: note: include '' or provide a declaration of 'strcpy' efetch.c:49:5: warning: incompatible implicit declaration of built-in function 'strcpy' strcpy(dbsource, "S"); ^~~~~~ efetch.c:49:5: note: include '' or provide a declaration of 'strcpy' efetch.c: In function 'pir': efetch.c:53:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (env = getenv("PIRDIR")) strcpy(dbdir, env); ^~~ efetch.c:53:33: warning: incompatible implicit declaration of built-in function 'strcpy' if (env = getenv("PIRDIR")) strcpy(dbdir, env); ^~~~~~ efetch.c:53:33: note: include '' or provide a declaration of 'strcpy' efetch.c:54:10: warning: incompatible implicit declaration of built-in function 'strcpy' else strcpy(dbdir, DEFAULT_PIRDIR); ^~~~~~ efetch.c:54:10: note: include '' or provide a declaration of 'strcpy' efetch.c:55:5: warning: incompatible implicit declaration of built-in function 'strcpy' strcpy(dbsource, "P"); ^~~~~~ efetch.c:55:5: note: include '' or provide a declaration of 'strcpy' efetch.c: In function 'wormpep': efetch.c:59:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (env = getenv("WORMDIR")) strcpy(dbdir, env); ^~~ efetch.c:59:34: warning: incompatible implicit declaration of built-in function 'strcpy' if (env = getenv("WORMDIR")) strcpy(dbdir, env); ^~~~~~ efetch.c:59:34: note: include '' or provide a declaration of 'strcpy' efetch.c:60:10: warning: incompatible implicit declaration of built-in function 'strcpy' else strcpy(dbdir, DEFAULT_WORMDIR); ^~~~~~ efetch.c:60:10: note: include '' or provide a declaration of 'strcpy' efetch.c:61:5: warning: incompatible implicit declaration of built-in function 'strcpy' strcpy(dbsource, "W"); ^~~~~~ efetch.c:61:5: note: include '' or provide a declaration of 'strcpy' efetch.c: In function 'embl': efetch.c:66:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (env = getenv("EMBLDIR")) strcpy(dbdir, env); ^~~ efetch.c:66:34: warning: incompatible implicit declaration of built-in function 'strcpy' if (env = getenv("EMBLDIR")) strcpy(dbdir, env); ^~~~~~ efetch.c:66:34: note: include '' or provide a declaration of 'strcpy' efetch.c:67:10: warning: incompatible implicit declaration of built-in function 'strcpy' else strcpy(dbdir, DEFAULT_EMBLDIR); ^~~~~~ efetch.c:67:10: note: include '' or provide a declaration of 'strcpy' efetch.c:68:5: warning: incompatible implicit declaration of built-in function 'strcpy' strcpy(dbsource, "E"); ^~~~~~ efetch.c:68:5: note: include '' or provide a declaration of 'strcpy' efetch.c: In function 'genbank': efetch.c:72:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (env = getenv("GBDIR")) strcpy(dbdir, env); ^~~ efetch.c:72:32: warning: incompatible implicit declaration of built-in function 'strcpy' if (env = getenv("GBDIR")) strcpy(dbdir, env); ^~~~~~ efetch.c:72:32: note: include '' or provide a declaration of 'strcpy' efetch.c:73:10: warning: incompatible implicit declaration of built-in function 'strcpy' else strcpy(dbdir, DEFAULT_GBDIR); ^~~~~~ efetch.c:73:10: note: include '' or provide a declaration of 'strcpy' efetch.c:74:5: warning: incompatible implicit declaration of built-in function 'strcpy' strcpy(dbsource, "G"); ^~~~~~ efetch.c:74:5: note: include '' or provide a declaration of 'strcpy' efetch.c: In function 'prodom': efetch.c:78:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (env = getenv("PRODOMDIR")) strcpy(dbdir, env); ^~~ efetch.c:78:36: warning: incompatible implicit declaration of built-in function 'strcpy' if (env = getenv("PRODOMDIR")) strcpy(dbdir, env); ^~~~~~ efetch.c:78:36: note: include '' or provide a declaration of 'strcpy' efetch.c:79:10: warning: incompatible implicit declaration of built-in function 'strcpy' else strcpy(dbdir, DEFAULT_PRODOMDIR); ^~~~~~ efetch.c:79:10: note: include '' or provide a declaration of 'strcpy' efetch.c:80:5: warning: incompatible implicit declaration of built-in function 'strcpy' strcpy(dbsource, "D"); ^~~~~~ efetch.c:80:5: note: include '' or provide a declaration of 'strcpy' efetch.c: In function 'prosite': efetch.c:84:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (env = getenv("PROSITEDIR")) strcpy(dbdir, env); ^~~ efetch.c:84:37: warning: incompatible implicit declaration of built-in function 'strcpy' if (env = getenv("PROSITEDIR")) strcpy(dbdir, env); ^~~~~~ efetch.c:84:37: note: include '' or provide a declaration of 'strcpy' efetch.c:85:10: warning: incompatible implicit declaration of built-in function 'strcpy' else strcpy(dbdir, DEFAULT_PROSITEDIR); ^~~~~~ efetch.c:85:10: note: include '' or provide a declaration of 'strcpy' efetch.c:86:5: warning: incompatible implicit declaration of built-in function 'strcpy' strcpy(dbsource, "R"); ^~~~~~ efetch.c:86:5: note: include '' or provide a declaration of 'strcpy' efetch.c: At top level: efetch.c:90:6: warning: return type of 'main' is not 'int' [-Wmain] void main(int argc, char *argv[]) ^~~~ efetch.c: In function 'main': efetch.c:192:11: warning: implicit declaration of function 'strncmp' [-Wimplicit-function-declaration] if (0 == strncmp("--help",argv[i],6) || 0 == strncmp("-help",argv[i],5)) { ^~~~~~~ efetch.c:193:23: warning: implicit declaration of function 'strlen' [-Wimplicit-function-declaration] if (!(help = malloc(strlen(helpText) + 102))) { ^~~~~~ efetch.c:193:23: warning: incompatible implicit declaration of built-in function 'strlen' efetch.c:193:23: note: include '' or provide a declaration of 'strlen' efetch.c:197:3: warning: incompatible implicit declaration of built-in function 'strcpy' strcpy(help, helpText); ^~~~~~ efetch.c:197:3: note: include '' or provide a declaration of 'strcpy' efetch.c:198:3: warning: implicit declaration of function 'strncat' [-Wimplicit-function-declaration] strncat(help, cc_date, 100); ^~~~~~~ efetch.c:198:3: warning: incompatible implicit declaration of built-in function 'strncat' efetch.c:198:3: note: include '' or provide a declaration of 'strncat' efetch.c:199:3: warning: implicit declaration of function 'strcat' [-Wimplicit-function-declaration] strcat(help, "\n"); ^~~~~~ efetch.c:199:3: warning: incompatible implicit declaration of built-in function 'strcat' efetch.c:199:3: note: include '' or provide a declaration of 'strcat' efetch.c:206:18: warning: implicit declaration of function 'getopt'; did you mean 'getsubopt'? [-Wimplicit-function-declaration] while ((optc = getopt(argc, argv, optstring)) != -1) ^~~~~~ getsubopt efetch.c:210:7: warning: incompatible implicit declaration of built-in function 'strcpy' strcpy(dbsource, optarg); break; ^~~~~~ efetch.c:210:7: note: include '' or provide a declaration of 'strcpy' efetch.c:225:7: warning: implicit declaration of function 'strncpy' [-Wimplicit-function-declaration] strncpy(idxfile, optarg, MAXFILE); break; ^~~~~~~ efetch.c:225:7: warning: incompatible implicit declaration of built-in function 'strncpy' efetch.c:225:7: note: include '' or provide a declaration of 'strncpy' efetch.c:247:27: warning: incompatible implicit declaration of built-in function 'strlen' if (!(help = malloc(strlen(helpText) + 102))) { ^~~~~~ efetch.c:247:27: note: include '' or provide a declaration of 'strlen' efetch.c:252:7: warning: incompatible implicit declaration of built-in function 'strncat' strncat(help, cc_date, 100); ^~~~~~~ efetch.c:252:7: note: include '' or provide a declaration of 'strncat' efetch.c:253:7: warning: incompatible implicit declaration of built-in function 'strcat' strcat(help, "\n"); ^~~~~~ efetch.c:253:7: note: include '' or provide a declaration of 'strcat' efetch.c:295:28: warning: incompatible implicit declaration of built-in function 'strlen' if (!(usage = malloc(strlen(usageText) + 102))) { ^~~~~~ efetch.c:295:28: note: include '' or provide a declaration of 'strlen' efetch.c:310:8: warning: incompatible implicit declaration of built-in function 'strcpy' else strcpy(query, argv[argc - 1]); ^~~~~~ efetch.c:310:8: note: include '' or provide a declaration of 'strcpy' efetch.c:312:15: warning: incompatible implicit declaration of built-in function 'strlen' for (i=0; i' or provide a declaration of 'strlen' efetch.c:312:46: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] for (i=0; i' or provide a declaration of 'strchr' efetch.c:313:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (tmpstr = (char *)strchr(query, '$')) *tmpstr = '_'; ^~~~~~ efetch.c:314:24: warning: incompatible implicit declaration of built-in function 'strchr' if (tmpstr = (char *)strchr(query, '*')) { ^~~~~~ efetch.c:314:24: note: include '' or provide a declaration of 'strchr' efetch.c:314:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (tmpstr = (char *)strchr(query, '*')) { ^~~~~~ efetch.c:319:15: warning: incompatible implicit declaration of built-in function 'strlen' for (i=0; i' or provide a declaration of 'strlen' efetch.c:339:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (env = getenv("DBDIR")) strcpy(dbdir, env); ^~~ efetch.c:339:34: warning: incompatible implicit declaration of built-in function 'strcpy' if (env = getenv("DBDIR")) strcpy(dbdir, env); ^~~~~~ efetch.c:339:34: note: include '' or provide a declaration of 'strcpy' efetch.c:342:29: warning: incompatible implicit declaration of built-in function 'strchr' else if (tmpstr = (char *)strchr(query, ':')) ^~~~~~ efetch.c:342:29: note: include '' or provide a declaration of 'strchr' efetch.c:342:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] else if (tmpstr = (char *)strchr(query, ':')) ^~~~~~ efetch.c:344:7: warning: incompatible implicit declaration of built-in function 'strcpy' strcpy(dbprefix, query); ^~~~~~ efetch.c:344:7: note: include '' or provide a declaration of 'strcpy' efetch.c:365:7: warning: implicit declaration of function 'strcmp' [-Wimplicit-function-declaration] if (strcmp(dbsource, "")) ^~~~~~ efetch.c:381:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (env = getenv("DBDIR")) { ^~~ efetch.c:382:4: warning: incompatible implicit declaration of built-in function 'strcpy' strcpy(dbdir, env); ^~~~~~ efetch.c:382:4: note: include '' or provide a declaration of 'strcpy' efetch.c:388:38: warning: incompatible implicit declaration of built-in function 'strlen' else if (strchr(query, '_') || strlen(query) < 5 ) swissprot(); ^~~~~~ efetch.c:388:38: note: include '' or provide a declaration of 'strlen' efetch.c:406:14: warning: incompatible implicit declaration of built-in function 'strcpy' if (env) strcpy(idxfile, env); ^~~~~~ efetch.c:406:14: note: include '' or provide a declaration of 'strcpy' efetch.c:419:22: warning: incompatible implicit declaration of built-in function 'strcpy' if (env != NULL) strcpy(divfile, env); ^~~~~~ efetch.c:419:22: note: include '' or provide a declaration of 'strcpy' efetch.c:533:22: warning: incompatible implicit declaration of built-in function 'strcpy' if (env != NULL) strcpy(dbfile, env); ^~~~~~ efetch.c:533:22: note: include '' or provide a declaration of 'strcpy' efetch.c:578:59: warning: implicit declaration of function 'strstr' [-Wimplicit-function-declaration] if (wormpep2swiss && *dbsource == 'W' && (cp = (char *)strstr(tmpstr, "SW:"))) { ^~~~~~ efetch.c:578:59: warning: incompatible implicit declaration of built-in function 'strstr' efetch.c:578:59: note: include '' or provide a declaration of 'strstr' efetch.c:579:29: warning: incompatible implicit declaration of built-in function 'strchr' if (tmpstr = (char *)strchr(cp, ' ')) *tmpstr = 0; ^~~~~~ efetch.c:579:29: note: include '' or provide a declaration of 'strchr' efetch.c:579:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (tmpstr = (char *)strchr(cp, ' ')) *tmpstr = 0; ^~~~~~ efetch.c:580:8: warning: incompatible implicit declaration of built-in function 'strcpy' strcpy(fetchstr, "efetch -a "); ^~~~~~ efetch.c:580:8: note: include '' or provide a declaration of 'strcpy' efetch.c:581:8: warning: incompatible implicit declaration of built-in function 'strcat' strcat(fetchstr, cp); ^~~~~~ efetch.c:581:8: note: include '' or provide a declaration of 'strcat' efetch.c:407:32: warning: '%s' directive writing 12 bytes into a region of size between 1 and 128 [-Wformat-overflow=] else sprintf(idxfile, "%s%s", dbdir, DEFAULT_IDXFILE); ^~ efetch.c:407:12: note: 'sprintf' output between 13 and 140 bytes into a destination of size 128 else sprintf(idxfile, "%s%s", dbdir, DEFAULT_IDXFILE); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ efetch.c:420:32: warning: '%s' directive writing 12 bytes into a region of size between 1 and 128 [-Wformat-overflow=] else sprintf(divfile, "%s%s", dbdir, DEFAULT_DIVFILE); ^~ efetch.c:420:12: note: 'sprintf' output between 13 and 140 bytes into a destination of size 128 else sprintf(divfile, "%s%s", dbdir, DEFAULT_DIVFILE); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ efetch.c:436:27: warning: '%s' directive writing 9 bytes into a region of size between 1 and 128 [-Wformat-overflow=] sprintf(actrgfile, "%s%s", dbdir, DEFAULT_ACTRGFILE); ^~ efetch.c:436:5: note: 'sprintf' output between 10 and 137 bytes into a destination of size 128 sprintf(actrgfile, "%s%s", dbdir, DEFAULT_ACTRGFILE); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ efetch.c:450:27: warning: '%s' directive writing 9 bytes into a region of size between 1 and 128 [-Wformat-overflow=] sprintf(achitfile, "%s%s", dbdir, DEFAULT_ACHITFILE); ^~ efetch.c:450:5: note: 'sprintf' output between 10 and 137 bytes into a destination of size 128 sprintf(achitfile, "%s%s", dbdir, DEFAULT_ACHITFILE); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ efetch.c:540:28: warning: '%s' directive writing 7 bytes into a region of size between 1 and 128 [-Wformat-overflow=] sprintf(dbfile, "%s%s", dbdir, DEFAULT_DBFILE); ^~ efetch.c:540:9: note: 'sprintf' output between 8 and 135 bytes into a destination of size 128 sprintf(dbfile, "%s%s", dbdir, DEFAULT_DBFILE); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ efetch.c:288:7: warning: 'strncpy' specified bound 128 equals destination size [-Wstringop-truncation] strncpy(customName, optarg, MAXFILE); break; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ efetch.c:264:7: warning: 'strncpy' specified bound 128 equals destination size [-Wstringop-truncation] strncpy(divfile, optarg, MAXFILE); break; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ efetch.c:225:7: warning: 'strncpy' specified bound 128 equals destination size [-Wstringop-truncation] strncpy(idxfile, optarg, MAXFILE); break; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ efetch.c:242:7: warning: 'strncpy' specified bound 128 equals destination size [-Wstringop-truncation] strncpy(dbfile, optarg, MAXFILE); break; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ efetch.c:235:7: warning: 'strncpy' specified bound 128 equals destination size [-Wstringop-truncation] strncpy(dbdir, optarg, MAXFILE); break; ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ efetch.c:308:5: warning: 'usage' may be used uninitialized in this function [-Wmaybe-uninitialized] fprintf(stderr, "%s\n", usage); exit(1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o dbidx.o dbidx.c dbidx.c: In function 'isseq': dbidx.c:109:13: warning: implicit declaration of function 'isalpha' [-Wimplicit-function-declaration] return (isalpha(c) || (c == '*')); ^~~~~~~ dbidx.c: In function 'printheader': dbidx.c:150:36: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat=] printf("Size of index file = %u\n", head->file_size); ~^ ~~~~~~~~~~~~~~~ %lu dbidx.c:151:36: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat=] printf("Number of records = %u\n", head->nrecords); ~^ ~~~~~~~~~~~~~~ %lu dbidx.c: In function 'printActrg': dbidx.c:162:41: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat=] printf("Number of hits = %u\n", rec->nhits); ~^ ~~~~~~~~~~ %lu dbidx.c:163:41: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat=] printf("Record number of first hit = %u\n", rec->hit_rec_num); ~^ ~~~~~~~~~~~~~~~~ %lu dbidx.c: In function 'readEntrynam': dbidx.c:198:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if( space = (char *)strchr(rec.entry_name, ' ') ) *space = '\0'; ^~~~~ dbidx.c: In function 'printEntrynam': dbidx.c:238:32: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat=] printf("Annotation offset = %u\n", rec->ann_offset); ~^ ~~~~~~~~~~~~~~~ %lu dbidx.c:239:32: warning: format '%u' expects argument of type 'unsigned int', but argument 2 has type 'long unsigned int' [-Wformat=] printf("Sequence offset = %u\n", rec->seq_offset); ~^ ~~~~~~~~~~~~~~~ %lu dbidx.c: In function 'printPIRseq': dbidx.c:330:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if( slash = (char *)strchr(ACnr, '\\') ) *slash = '\0'; ^~~~~ dbidx.c:353:22: warning: implicit declaration of function 'toupper' [-Wimplicit-function-declaration] TITLEline[i] = toupper(TITLEline[i]); ^~~~~~~ dbidx.c: In function 'printGBseq': dbidx.c:398:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if( slash = (char *)strchr(ACnr, '\\') ) *slash = '\0'; ^~~~~ dbidx.c: In function 'printEMBLseq': dbidx.c:448:15: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if( slash = (char *)strchr(buff, ';') ) *slash = '\0'; ^~~~~ dbidx.c: In function 'getname': dbidx.c:586:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses] if (space = (char *)strchr(name, ' ')) *space = 0; ^~~~~ dbidx.c: In function 'getdbfile': dbidx.c:627:38: warning: implicit declaration of function 'isspace' [-Wimplicit-function-declaration] for (i=0; inums = (int *)messalloc(sequence->length * sizeof(int)); ^~~~~~~~~ gfcode.c:67:22: warning: incompatible implicit declaration of built-in function 'malloc' #define messalloc(z) malloc(z) ^~~~~~ gfcode.c:188:29: note: in expansion of macro 'messalloc' sequence->nums = (int *)messalloc(sequence->length * sizeof(int)); ^~~~~~~~~ gfcode.c:67:22: note: include '' or provide a declaration of 'malloc' #define messalloc(z) malloc(z) ^~~~~~ gfcode.c:76:1: +#include gfcode.c:188:29: note: in expansion of macro 'messalloc' sequence->nums = (int *)messalloc(sequence->length * sizeof(int)); ^~~~~~~~~ gfcode.c: In function 'countsToFreqs': gfcode.c:210:8: warning: implicit declaration of function 'strcmp' [-Wimplicit-function-declaration] if (!strcmp(table->classDef,"defined")) ^~~~~~ gfcode.c: In function 'readTableFile': gfcode.c:486:7: warning: implicit declaration of function 'strcpy' [-Wimplicit-function-declaration] strcpy(string,string2); ^~~~~~ gfcode.c:486:7: warning: incompatible implicit declaration of built-in function 'strcpy' gfcode.c:486:7: note: include '' or provide a declaration of 'strcpy' gfcode.c:76:1: +#include gfcode.c:486:7: strcpy(string,string2); ^~~~~~ gfcode.c:499:7: warning: implicit declaration of function 'exit' [-Wimplicit-function-declaration] exit(1); ^~~~ gfcode.c:499:7: warning: incompatible implicit declaration of built-in function 'exit' gfcode.c:499:7: note: include '' or provide a declaration of 'exit' gfcode.c:516:4: warning: incompatible implicit declaration of built-in function 'exit' exit(1); ^~~~ gfcode.c:516:4: note: include '' or provide a declaration of 'exit' gfcode.c: In function 'initTable': gfcode.c:67:22: warning: incompatible implicit declaration of built-in function 'malloc' #define messalloc(z) malloc(z) ^~~~~~ gfcode.c:538:22: note: in expansion of macro 'messalloc' table = (GfTable *)messalloc(sizeof(GfTable)); ^~~~~~~~~ gfcode.c:67:22: note: include '' or provide a declaration of 'malloc' #define messalloc(z) malloc(z) ^~~~~~ gfcode.c:538:22: note: in expansion of macro 'messalloc' table = (GfTable *)messalloc(sizeof(GfTable)); ^~~~~~~~~ gfcode.c:541:3: warning: incompatible implicit declaration of built-in function 'strcpy' strcpy(table->refSeqs,"all"); /*default reference sequences*/ ^~~~~~ gfcode.c:541:3: note: include '' or provide a declaration of 'strcpy' gfcode.c: In function 'expandTable': gfcode.c:67:22: warning: incompatible implicit declaration of built-in function 'malloc' #define messalloc(z) malloc(z) ^~~~~~ gfcode.c:570:29: note: in expansion of macro 'messalloc' table->numTuples = (int *)messalloc(table->numCols * sizeof(int)); ^~~~~~~~~ gfcode.c:67:22: note: include '' or provide a declaration of 'malloc' #define messalloc(z) malloc(z) ^~~~~~ gfcode.c:570:29: note: in expansion of macro 'messalloc' table->numTuples = (int *)messalloc(table->numCols * sizeof(int)); ^~~~~~~~~ gfcode.c: In function 'allocIntMat': gfcode.c:67:22: warning: incompatible implicit declaration of built-in function 'malloc' #define messalloc(z) malloc(z) ^~~~~~ gfcode.c:578:20: note: in expansion of macro 'messalloc' mtable = (int **)messalloc(table->numRows * sizeof(int *)); ^~~~~~~~~ gfcode.c:67:22: note: include '' or provide a declaration of 'malloc' #define messalloc(z) malloc(z) ^~~~~~ gfcode.c:578:20: note: in expansion of macro 'messalloc' mtable = (int **)messalloc(table->numRows * sizeof(int *)); ^~~~~~~~~ gfcode.c: In function 'allocFloatMat': gfcode.c:67:22: warning: incompatible implicit declaration of built-in function 'malloc' #define messalloc(z) malloc(z) ^~~~~~ gfcode.c:591:22: note: in expansion of macro 'messalloc' stable = (float **)messalloc(table->numRows * sizeof(float *)); ^~~~~~~~~ gfcode.c:67:22: note: include '' or provide a declaration of 'malloc' #define messalloc(z) malloc(z) ^~~~~~ gfcode.c:591:22: note: in expansion of macro 'messalloc' stable = (float **)messalloc(table->numRows * sizeof(float *)); ^~~~~~~~~ gfcode.c: In function 'makeConvTable': gfcode.c:67:22: warning: incompatible implicit declaration of built-in function 'malloc' #define messalloc(z) malloc(z) ^~~~~~ gfcode.c:605:22: note: in expansion of macro 'messalloc' convTable = (int *)messalloc(256 * sizeof(int)); ^~~~~~~~~ gfcode.c:67:22: note: include '' or provide a declaration of 'malloc' #define messalloc(z) malloc(z) ^~~~~~ gfcode.c:605:22: note: in expansion of macro 'messalloc' convTable = (int *)messalloc(256 * sizeof(int)); ^~~~~~~~~ gfcode.c: In function 'aceFeatures': gfcode.c:67:22: warning: incompatible implicit declaration of built-in function 'malloc' #define messalloc(z) malloc(z) ^~~~~~ gfcode.c:659:25: note: in expansion of macro 'messalloc' diffVec = (double *)messalloc((length+3) * sizeof(double)); ^~~~~~~~~ gfcode.c:67:22: note: include '' or provide a declaration of 'malloc' #define messalloc(z) malloc(z) ^~~~~~ gfcode.c:659:25: note: in expansion of macro 'messalloc' diffVec = (double *)messalloc((length+3) * sizeof(double)); ^~~~~~~~~ gfcode.c:664:11: warning: implicit declaration of function 'strncmp' [-Wimplicit-function-declaration] (( ! strncmp( sequence->letters + i, "TAA", 3) ^~~~~~~ gfcode.c:68:21: warning: implicit declaration of function 'free' [-Wimplicit-function-declaration] #define messfree(z) free(z) ^~~~ gfcode.c:671:5: note: in expansion of macro 'messfree' messfree (diffVec); ^~~~~~~~ gfcode.c:68:21: warning: incompatible implicit declaration of built-in function 'free' #define messfree(z) free(z) ^~~~ gfcode.c:671:5: note: in expansion of macro 'messfree' messfree (diffVec); ^~~~~~~~ gfcode.c:68:21: note: include '' or provide a declaration of 'free' #define messfree(z) free(z) ^~~~ gfcode.c:671:5: note: in expansion of macro 'messfree' messfree (diffVec); ^~~~~~~~ gfcode.c:643:7: warning: variable 'nSites' set but not used [-Wunused-but-set-variable] int nSites; ^~~~~~ gfcode.c: In function 'allocGap': gfcode.c:67:22: warning: incompatible implicit declaration of built-in function 'malloc' #define messalloc(z) malloc(z) ^~~~~~ gfcode.c:748:40: note: in expansion of macro 'messalloc' if (!(numGaps%500)) headGap = (Gap *)messalloc(500 * sizeof(Gap)); ^~~~~~~~~ gfcode.c:67:22: note: include '' or provide a declaration of 'malloc' #define messalloc(z) malloc(z) ^~~~~~ gfcode.c:748:40: note: in expansion of macro 'messalloc' if (!(numGaps%500)) headGap = (Gap *)messalloc(500 * sizeof(Gap)); ^~~~~~~~~ gfcode.c: In function 'aceMaxSegs': gfcode.c:67:22: warning: incompatible implicit declaration of built-in function 'malloc' #define messalloc(z) malloc(z) ^~~~~~ gfcode.c:781:19: note: in expansion of macro 'messalloc' maxPos = (int *)messalloc((end+1) * sizeof(int)); ^~~~~~~~~ gfcode.c:67:22: note: include '' or provide a declaration of 'malloc' #define messalloc(z) malloc(z) ^~~~~~ gfcode.c:781:19: note: in expansion of macro 'messalloc' maxPos = (int *)messalloc((end+1) * sizeof(int)); ^~~~~~~~~ gfcode.c:68:21: warning: incompatible implicit declaration of built-in function 'free' #define messfree(z) free(z) ^~~~ gfcode.c:821:3: note: in expansion of macro 'messfree' messfree (maxPos); ^~~~~~~~ gfcode.c:68:21: note: include '' or provide a declaration of 'free' #define messfree(z) free(z) ^~~~ gfcode.c:821:3: note: in expansion of macro 'messfree' messfree (maxPos); ^~~~~~~~ gfcode.c: In function 'sequenceAllocate': gfcode.c:67:22: warning: incompatible implicit declaration of built-in function 'malloc' #define messalloc(z) malloc(z) ^~~~~~ gfcode.c:837:21: note: in expansion of macro 'messalloc' seq = (Sequence *)messalloc(sizeof(Sequence)) ; ^~~~~~~~~ gfcode.c:67:22: note: include '' or provide a declaration of 'malloc' #define messalloc(z) malloc(z) ^~~~~~ gfcode.c:837:21: note: in expansion of macro 'messalloc' seq = (Sequence *)messalloc(sizeof(Sequence)) ; ^~~~~~~~~ gfcode.c:842:3: warning: incompatible implicit declaration of built-in function 'strcpy' strcpy (seq->name, name) ; ^~~~~~ gfcode.c:842:3: note: include '' or provide a declaration of 'strcpy' gfcode.c: In function 'sequenceDestroy': gfcode.c:68:21: warning: incompatible implicit declaration of built-in function 'free' #define messfree(z) free(z) ^~~~ gfcode.c:851:3: note: in expansion of macro 'messfree' messfree (seq->letters) ; ^~~~~~~~ gfcode.c:68:21: note: include '' or provide a declaration of 'free' #define messfree(z) free(z) ^~~~ gfcode.c:851:3: note: in expansion of macro 'messfree' messfree (seq->letters) ; ^~~~~~~~ gfcode.c: In function 'createSequences': gfcode.c:869:12: warning: implicit declaration of function 'strlen' [-Wimplicit-function-declaration] length = strlen (dna) ; ^~~~~~ gfcode.c:869:12: warning: incompatible implicit declaration of built-in function 'strlen' gfcode.c:869:12: note: include '' or provide a declaration of 'strlen' gfcode.c: In function 'geneFinderInit': gfcode.c:1086:7: warning: incompatible implicit declaration of built-in function 'strcpy' strcpy( lastFileName, fileName ); ^~~~~~ gfcode.c:1086:7: note: include '' or provide a declaration of 'strcpy' gfcode.c:1017:9: warning: unused variable 'cp' [-Wunused-variable] char *cp, fileName[MAXSTRLEN], lastFileName[MAXSTRLEN] ; ^~ gfcode.c: In function 'usage': gfcode.c:1106:3: warning: incompatible implicit declaration of built-in function 'exit' exit (-1) ; ^~~~ gfcode.c:1106:3: note: include '' or provide a declaration of 'exit' gfcode.c: In function 'main': gfcode.c:1168:7: warning: incompatible implicit declaration of built-in function 'exit' exit(0); ^~~~ gfcode.c:1168:7: note: include '' or provide a declaration of 'exit' gfcode.c:1177:25: warning: implicit declaration of function 'atof'; did you mean 'atanf'? [-Wimplicit-function-declaration] { intron3Cutoff = atof (argv[1]) ; ^~~~ atanf gfcode.c:1214:55: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'char **' [-Wformat=] { fprintf (stderr, "Failed to open sequence file %s\n", argv) ; ~^ ~~~~ gfcode.c:1220:50: warning: format '%s' expects argument of type 'char *', but argument 3 has type 'char **' [-Wformat=] { fprintf (stderr, "Errors reading sequence %s\n", argv) ; ~^ ~~~~ At top level: gfcode.c:79:14: warning: 'localGf' defined but not used [-Wunused-variable] static BOOL localGf = TRUE ; ^~~~~~~ gfcode.c: In function 'aceSites.part.5': gfcode.c:1138:3: warning: 'idx' may be used uninitialized in this function [-Wmaybe-uninitialized] printf ("%s\tGenefinder\t%s\t%d\t%d\t%.4f\t%c\t%c\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ seqName, featName[idx], start, end, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ score, comp ? '-' : '+', '.') ; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gfcode.c:1112:19: note: 'idx' was declared here int start, end, idx; ^~~ gfcode.c:1138:3: warning: 'end' may be used uninitialized in this function [-Wmaybe-uninitialized] printf ("%s\tGenefinder\t%s\t%d\t%d\t%.4f\t%c\t%c\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ seqName, featName[idx], start, end, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ score, comp ? '-' : '+', '.') ; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gfcode.c:1112:14: note: 'end' was declared here int start, end, idx; ^~~ gfcode.c:1138:3: warning: 'start' may be used uninitialized in this function [-Wmaybe-uninitialized] printf ("%s\tGenefinder\t%s\t%d\t%d\t%.4f\t%c\t%c\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ seqName, featName[idx], start, end, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ score, comp ? '-' : '+', '.') ; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gfcode.c:1112:7: note: 'start' was declared here int start, end, idx; ^~~~~ gfcode.c:1138:3: warning: 'idx' may be used uninitialized in this function [-Wmaybe-uninitialized] printf ("%s\tGenefinder\t%s\t%d\t%d\t%.4f\t%c\t%c\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ seqName, featName[idx], start, end, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ score, comp ? '-' : '+', '.') ; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gfcode.c:1112:19: note: 'idx' was declared here int start, end, idx; ^~~ gfcode.c:1138:3: warning: 'end' may be used uninitialized in this function [-Wmaybe-uninitialized] printf ("%s\tGenefinder\t%s\t%d\t%d\t%.4f\t%c\t%c\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ seqName, featName[idx], start, end, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ score, comp ? '-' : '+', '.') ; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gfcode.c:1112:14: note: 'end' was declared here int start, end, idx; ^~~ gfcode.c:1138:3: warning: 'start' may be used uninitialized in this function [-Wmaybe-uninitialized] printf ("%s\tGenefinder\t%s\t%d\t%d\t%.4f\t%c\t%c\n", ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ seqName, featName[idx], start, end, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ score, comp ? '-' : '+', '.') ; ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gfcode.c:1112:7: note: 'start' was declared here int start, end, idx; ^~~~~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security readseq.c readseq.c: In function 'add': readseq.c:48:4: warning: implicit declaration of function 'memcpy' [-Wimplicit-function-declaration] memcpy (newbuf, *buf, n) ; ^~~~~~ readseq.c:48:4: warning: incompatible implicit declaration of built-in function 'memcpy' readseq.c:48:4: note: include '' or provide a declaration of 'memcpy' readseq.c:21:1: +#include readseq.c:48:4: memcpy (newbuf, *buf, n) ; ^~~~~~ readseq.c: In function 'readSequence': readseq.c:121:15: warning: array subscript has type 'char' [-Wchar-subscripts] if (conv[c] < -1) ^ readseq.c:130:15: warning: array subscript has type 'char' [-Wchar-subscripts] if (conv[c] >= 0) ^ readseq.c:131:11: warning: array subscript has type 'char' [-Wchar-subscripts] add (conv[c], seq, &buflen, n++) ; ^ readseq.c: In function 'writeSequence': readseq.c:190:15: warning: array subscript has type 'char' [-Wchar-subscripts] if (conv[seq[i]] > 0) ^ readseq.c:191:13: warning: array subscript has type 'char' [-Wchar-subscripts] fputc (conv[seq[i]], fil) ; ^ readseq.c: In function 'readMatrix': readseq.c:215:5: warning: implicit declaration of function 'strcpy' [-Wimplicit-function-declaration] strcpy (matdirname, getenv ("BLASTMAT")) ; ^~~~~~ readseq.c:215:5: warning: incompatible implicit declaration of built-in function 'strcpy' readseq.c:215:5: note: include '' or provide a declaration of 'strcpy' readseq.c:217:5: warning: incompatible implicit declaration of built-in function 'strcpy' strcpy (matdirname, "/nfs/disk100/pubseq/blastdb/") ; ^~~~~~ readseq.c:217:5: note: include '' or provide a declaration of 'strcpy' readseq.c:218:3: warning: incompatible implicit declaration of built-in function 'strcpy' strcpy (fullname, matdirname) ; ^~~~~~ readseq.c:218:3: note: include '' or provide a declaration of 'strcpy' readseq.c:219:3: warning: implicit declaration of function 'strcat' [-Wimplicit-function-declaration] strcat (fullname, name) ; ^~~~~~ readseq.c:219:3: warning: incompatible implicit declaration of built-in function 'strcat' readseq.c:219:3: note: include '' or provide a declaration of 'strcat' readseq.c:233:21: warning: array subscript has type 'char' [-Wchar-subscripts] { symb[i] = conv[*p] ; ^ readseq.c:252:20: warning: array subscript has type 'char' [-Wchar-subscripts] if (p && conv[*p] == symb[i]) ^ gcc -g -Wl,-z,relro -Wl,-z,now -o genefeatures gfcode.o readseq.o -lm make[3]: Leaving directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' make[2]: Leaving directory '/build/acedb-4.9.39+dfsg.02' make[1]: Leaving directory '/build/acedb-4.9.39+dfsg.02' debian/rules override_dh_auto_test make[1]: Entering directory '/build/acedb-4.9.39+dfsg.02' cd bin && ln -s ../w2/graphtest.c dh_auto_test || true make -j15 test make[2]: Entering directory '/build/acedb-4.9.39+dfsg.02' making xtest for LINUX_4 making coltest for LINUX_4 making giftest for LINUX_4 making boxtest for LINUX_4 make[3]: Entering directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o aceversion.o aceversion.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphtest.o graphtest.c making md5test for LINUX_4 make[3]: Entering directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' make[3]: Entering directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o graphtest.o graphtest.c making acelibtest for LINUX_4 gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o coltest.o coltest.c make[3]: Entering directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o aceversion.o aceversion.c make[3]: *** No rule to make target 'graphboxtest.o', needed by 'boxtest'. Stop. make[3]: *** Waiting for unfinished jobs.... make[3]: Entering directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' make[3]: Entering directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o aceversion.o aceversion.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o mddriver.o mddriver.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o digcalc.o digcalc.c gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -o digtest.o digtest.c digcalc.c: In function 'DigestCalcHA1': digcalc.c:45:26: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, pszUserName, strlen(pszUserName)); ^~~~~~~~~~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:46:26: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, ":", 1); ^~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:47:26: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, pszRealm, strlen(pszRealm)); ^~~~~~~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:48:26: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, ":", 1); ^~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:49:26: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, pszPassword, strlen(pszPassword)); ^~~~~~~~~~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:50:16: warning: pointer targets in passing argument 1 of 'MD5Final' differ in signedness [-Wpointer-sign] MD5Final(HA1, &Md5Ctx); ^~~ In file included from digcalc.c:4: ../wmd5/md5.h:36:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Final PROTO_LIST ((unsigned char [16], MD5_CTX *)); ^~~~~~~~ digcalc.c:58:32: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, HA1, HASHLEN); ^~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:59:32: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, ":", 1); ^~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:60:32: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, pszNonce, strlen(pszNonce)); ^~~~~~~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:61:32: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, ":", 1); ^~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:62:32: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, pszCNonce, strlen(pszCNonce)); ^~~~~~~~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:63:22: warning: pointer targets in passing argument 1 of 'MD5Final' differ in signedness [-Wpointer-sign] MD5Final(HA1, &Md5Ctx); ^~~ In file included from digcalc.c:4: ../wmd5/md5.h:36:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Final PROTO_LIST ((unsigned char [16], MD5_CTX *)); ^~~~~~~~ digcalc.c: In function 'DigestCalcResponse': digcalc.c:88:26: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, pszMethod, strlen(pszMethod)); ^~~~~~~~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:89:26: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, ":", 1); ^~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:90:26: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, pszDigestUri, strlen(pszDigestUri)); ^~~~~~~~~~~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:96:32: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, ":", 1); ^~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:97:32: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, HEntity, HASHHEXLEN); ^~~~~~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:99:16: warning: pointer targets in passing argument 1 of 'MD5Final' differ in signedness [-Wpointer-sign] MD5Final(HA2, &Md5Ctx); ^~~ In file included from digcalc.c:4: ../wmd5/md5.h:36:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Final PROTO_LIST ((unsigned char [16], MD5_CTX *)); ^~~~~~~~ digcalc.c:104:26: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, HA1, HASHHEXLEN); ^~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:105:26: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, ":", 1); ^~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:106:26: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, pszNonce, strlen(pszNonce)); ^~~~~~~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:107:26: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, ":", 1); ^~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:109:30: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, pszNonceCount, strlen(pszNonceCount)); ^~~~~~~~~~~~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:110:30: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, ":", 1); ^~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:111:30: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, pszCNonce, strlen(pszCNonce)); ^~~~~~~~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:112:30: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, ":", 1); ^~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:113:30: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, pszQop, strlen(pszQop)); ^~~~~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:114:30: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, ":", 1); ^~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:116:26: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MD5Update(&Md5Ctx, HA2Hex, HASHHEXLEN); ^~~~~~ In file included from digcalc.c:4: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ digcalc.c:117:16: warning: pointer targets in passing argument 1 of 'MD5Final' differ in signedness [-Wpointer-sign] MD5Final(RespHash, &Md5Ctx); ^~~~~~~~ In file included from digcalc.c:4: ../wmd5/md5.h:36:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Final PROTO_LIST ((unsigned char [16], MD5_CTX *)); ^~~~~~~~ mddriver.c: In function 'MDString': mddriver.c:110:23: warning: pointer targets in passing argument 2 of 'MD5Update' differ in signedness [-Wpointer-sign] MDUpdate (&context, string, len); ^~~~~~ In file included from mddriver.c:35: ../wmd5/md5.h:35:6: note: expected 'unsigned char *' but argument is of type 'char *' void MD5Update PROTO_LIST ((MD5_CTX *, unsigned char *, unsigned int)); ^~~~~~~~~ mddriver.c: In function 'MDFile': mddriver.c:189:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while (len = fread (buffer, 1, 1024, file)) ^~~ mddriver.c: In function 'MDFilter': mddriver.c:210:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses] while (len = fread (buffer, 1, 16, stdin)) ^~~ ar rlu libfree.a aceversion.o ar: `u' modifier ignored since `D' is the default (see `U') graphtest.c:102:28: warning: missing braces around initializer [-Wmissing-braces] static FREEOPT options[] = { 4,"Options", ^ { } 'd',"Quit", { } 'f',"Finish", { } 'p',"Pop", { } 't',"Retitle", { } ; } graphtest.c: In function 'keyboard': graphtest.c:141:15: warning: implicit declaration of function 'graphOut'; did you mean 'graphGIF'? [-Wimplicit-function-declaration] case 'o': graphOut (messprintf ("%s%s%s", ^~~~~~~~ graphGIF graphtest.c:146:11: warning: implicit declaration of function 'graphQuery'; did you mean 'graphWhere'? [-Wimplicit-function-declaration] if (graphQuery (prompt)) ^~~~~~~~~~ graphWhere graphtest.c:102:28: warning: missing braces around initializer [-Wmissing-braces] static FREEOPT options[] = { 4,"Options", ^ { } 'd',"Quit", { } 'f',"Finish", { } 'p',"Pop", { } 't',"Retitle", { } ; } graphtest.c:152:11: warning: implicit declaration of function 'graphPrompt'; did you mean 'graphPrint'? [-Wimplicit-function-declaration] if (graphPrompt ("New prompt for query:",prompt,"t")) ^~~~~~~~~~~ graphPrint graphtest.c: At top level: graphtest.c:180:25: warning: missing braces around initializer [-Wmissing-braces] static MENUOPT menu[] = { ^ graphDestroy, "Quit", { } graphPrint, "Print Screen", { } boxInfo, "Box info", { } where, "Where", { } 0, 0 } ; { } graphtest.c:187:6: warning: return type of 'main' is not 'int' [-Wmain] void main (int argc, char **argv) ^~~~ graphtest.c: In function 'main': graphtest.c:233:3: warning: implicit declaration of function 'graphRampTool'; did you mean 'graphRawMaps'? [-Wimplicit-function-declaration] graphRampTool () ; ^~~~~~~~~~~~~ graphRawMaps graphtest.c:189:21: warning: variable 'g4' set but not used [-Wunused-but-set-variable] Graph g1, g2, g3, g4 ; ^~ graphtest.c:189:17: warning: variable 'g3' set but not used [-Wunused-but-set-variable] Graph g1, g2, g3, g4 ; ^~ graphtest.c:189:13: warning: variable 'g2' set but not used [-Wunused-but-set-variable] Graph g1, g2, g3, g4 ; ^~ graphtest.c:189:9: warning: variable 'g1' set but not used [-Wunused-but-set-variable] Graph g1, g2, g3, g4 ; ^~ graphtest.c: In function 'keyboard': graphtest.c:141:15: warning: implicit declaration of function 'graphOut'; did you mean 'graphGIF'? [-Wimplicit-function-declaration] case 'o': graphOut (messprintf ("%s%s%s", ^~~~~~~~ graphGIF graphtest.c:146:11: warning: implicit declaration of function 'graphQuery'; did you mean 'graphWhere'? [-Wimplicit-function-declaration] if (graphQuery (prompt)) ^~~~~~~~~~ graphWhere graphtest.c:152:11: warning: implicit declaration of function 'graphPrompt'; did you mean 'graphPrint'? [-Wimplicit-function-declaration] if (graphPrompt ("New prompt for query:",prompt,"t")) ^~~~~~~~~~~ graphPrint graphtest.c: At top level: graphtest.c:180:25: warning: missing braces around initializer [-Wmissing-braces] static MENUOPT menu[] = { ^ graphDestroy, "Quit", { } graphPrint, "Print Screen", { } boxInfo, "Box info", { } where, "Where", { } 0, 0 } ; { } graphtest.c:187:6: warning: return type of 'main' is not 'int' [-Wmain] void main (int argc, char **argv) ^~~~ graphtest.c: In function 'main': graphtest.c:233:3: warning: implicit declaration of function 'graphRampTool'; did you mean 'graphRawMaps'? [-Wimplicit-function-declaration] graphRampTool () ; ^~~~~~~~~~~~~ graphRawMaps graphtest.c:189:21: warning: variable 'g4' set but not used [-Wunused-but-set-variable] Graph g1, g2, g3, g4 ; ^~ graphtest.c:189:17: warning: variable 'g3' set but not used [-Wunused-but-set-variable] Graph g1, g2, g3, g4 ; ^~ graphtest.c:189:13: warning: variable 'g2' set but not used [-Wunused-but-set-variable] Graph g1, g2, g3, g4 ; ^~ graphtest.c:189:9: warning: variable 'g1' set but not used [-Wunused-but-set-variable] Graph g1, g2, g3, g4 ; ^~ gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -Wl,-z,relro -Wl,-z,now digtest.o -o digtest coltest.c:63:32: warning: missing braces around initializer [-Wmissing-braces] static MENUOPT exampleMenu[] = { ^ graphDestroy, "Quit", { } 0,0 { }; } coltest.c:72:1: warning: return type defaults to 'int' [-Wimplicit-int] main(int argc, char *argv[]) ^~~~ coltest.c: In function 'main': coltest.c:95:19: warning: assignment to 'float (*)(struct MapControlStruct *)' from incompatible pointer type 'void (*)(struct MapControlStruct *)' [-Wincompatible-pointer-types] map->drawHeader = exampleDrawHeader; /* draw the header */ ^ coltest.c: At top level: coltest.c:273:36: warning: missing braces around initializer [-Wmissing-braces] static COLOUROPT exampleButton[] = { ^ exampleButtonPressed, 0, /* 0 is arg to function */ { coltest.c:276:17: "A Button", 0 }; } coltest.c:278:33: warning: missing braces around initializer [-Wmissing-braces] static MENUOPT menuOnButton[] = { ^ graphDestroy, "Quit-from-button", { } 0, 0}; { } coltest.c:291:3: warning: initialization of 'void (*)(struct ProtoStruct *, struct MapControlStruct *)' from incompatible pointer type 'void (*)(struct MapControlStruct *, struct ColControlStruct *)' [-Wincompatible-pointer-types] exampleInit, /* called from controlAddMap for each prototype */ ^~~~~~~~~~~ coltest.c:291:3: note: (near initialization for 'exampleColumn.init') gcc: warning: digtest.o: linker input file unused because linking not done make[3]: Leaving directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' make[2]: *** [makefile:95: boxtest] Error 2 make[2]: *** Waiting for unfinished jobs.... ar rlu libfree.a aceversion.o ar: `u' modifier ignored since `D' is the default (see `U') gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c -Wl,-z,relro -Wl,-z,now mddriver.o -o mddriver gcc -g -Wall -DACEDB4 `../w3rdparty/include-config glib-2.0 gtk+-2.0` -g -O2 -ffile-prefix-map=/build/acedb-4.9.39+dfsg.02=. -fstack-protector-strong -Wformat -Werror=format-security -I.. -I../wh -I../wstaden -DACEDB_GTK -DLINUX -c acelibtest.c gcc: warning: mddriver.o: linker input file unused because linking not done gcc -g -Wl,-z,relro -Wl,-z,now -o mddriver mddriver.o -L. -lmd5 gcc -g -Wl,-z,relro -Wl,-z,now -o coltest coltest.o -L. -lgex -lgraph -lgd -lfree `../w3rdparty/acedb-config glib-2.0 gtk+-2.0` -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 gcc -g -Wl,-z,relro -Wl,-z,now -o giftest graphtest.o -L. -lgraph -lgd -lfree -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 gcc -g -Wl,-z,relro -Wl,-z,now -o digtest digcalc.o digtest.o -L. -lmd5 gcc -g -Wl,-z,relro -Wl,-z,now -o xtest graphtest.o -L. -lgex -lgraph -lgd -lfree `../w3rdparty/acedb-config glib-2.0 gtk+-2.0` -L/usr/X11R6/lib `../w3rdparty/libs-config glib-2.0 gtk+-2.0` -lm -lreadline -lX11 make[3]: Leaving directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' acelibtest.c:42:6: warning: return type of 'main' is not 'int' [-Wmain] void main(int argc, char **argv) ^~~~ acelibtest.c: In function 'main': acelibtest.c:64:5: error: format not a string literal and no format arguments [-Werror=format-security] fprintf (stderr, aceErrorMessage(0)) ; ^~~~~~~ acelibtest.c:45:9: warning: unused variable 'cp' [-Wunused-variable] char *cp ; ^~ cc1: some warnings being treated as errors make[3]: *** [makefile:1015: acelibtest] Error 1 make[3]: Leaving directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' make[2]: *** [makefile:94: acelibtest] Error 2 /usr/bin/ld: ./libgraph.a(graphascii.o): in function `graphASCII': ./bin.LINUX_4/graphascii.c:264: warning: the use of `tempnam' is dangerous, better use `mkstemp' /usr/bin/ld: ./libgraph.a(graphprint.o): in function `pdInit': ./bin.LINUX_4/graphprint.c:1164: warning: the `getwd' function is dangerous and should not be used. /usr/bin/ld: graphtest.o: in function `keyboard': ./bin.LINUX_4/graphtest.c:152: undefined reference to `graphPrompt' /usr/bin/ld: ./bin.LINUX_4/graphtest.c:141: undefined reference to `graphOut' /usr/bin/ld: ./bin.LINUX_4/graphtest.c:146: undefined reference to `graphQuery' /usr/bin/ld: graphtest.o: in function `main': ./bin.LINUX_4/graphtest.c:233: undefined reference to `graphRampTool' collect2: error: ld returned 1 exit status make[3]: *** [makefile:1225: giftest] Error 1 make[3]: Leaving directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' make[2]: *** [makefile:94: giftest] Error 2 /usr/bin/ld: ./libgraph.a(graphascii.o): in function `graphASCII': ./bin.LINUX_4/graphascii.c:264: warning: the use of `tempnam' is dangerous, better use `mkstemp' /usr/bin/ld: ./libgraph.a(graphprint.o): in function `pdInit': ./bin.LINUX_4/graphprint.c:1164: warning: the `getwd' function is dangerous and should not be used. make[3]: Leaving directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' /usr/bin/ld: ./libgraph.a(graphascii.o): in function `graphASCII': ./bin.LINUX_4/graphascii.c:264: warning: the use of `tempnam' is dangerous, better use `mkstemp' /usr/bin/ld: ./libgraph.a(graphprint.o): in function `pdInit': ./bin.LINUX_4/graphprint.c:1164: warning: the `getwd' function is dangerous and should not be used. /usr/bin/ld: graphtest.o: in function `keyboard': ./bin.LINUX_4/graphtest.c:152: undefined reference to `graphPrompt' /usr/bin/ld: ./bin.LINUX_4/graphtest.c:141: undefined reference to `graphOut' /usr/bin/ld: ./bin.LINUX_4/graphtest.c:146: undefined reference to `graphQuery' /usr/bin/ld: graphtest.o: in function `main': ./bin.LINUX_4/graphtest.c:233: undefined reference to `graphRampTool' collect2: error: ld returned 1 exit status make[3]: *** [makefile:1219: xtest] Error 1 make[3]: Leaving directory '/build/acedb-4.9.39+dfsg.02/bin.LINUX_4' make[2]: *** [makefile:94: xtest] Error 2 make[2]: Leaving directory '/build/acedb-4.9.39+dfsg.02' dh_auto_test: make -j15 test returned exit code 2 make[1]: Leaving directory '/build/acedb-4.9.39+dfsg.02' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/acedb-4.9.39+dfsg.02' mkdir -p debian/tmp/usr/bin cp -d `find bin/ -type f -a -executable` debian/tmp/usr/bin # dh_install --autodest -s make[1]: Leaving directory '/build/acedb-4.9.39+dfsg.02' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/acedb-4.9.39+dfsg.02' dh_fixperms rm -rf `find debian -name sbin -type d -empty` make[1]: Leaving directory '/build/acedb-4.9.39+dfsg.02' dh_missing dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'acedb-other-dotter' in '../acedb-other-dotter_4.9.39+dfsg.02-4_all.deb'. dpkg-deb: building package 'acedb-other-belvu' in '../acedb-other-belvu_4.9.39+dfsg.02-4_all.deb'. dpkg-deb: building package 'acedb-other-dbgsym' in '../acedb-other-dbgsym_4.9.39+dfsg.02-4_amd64.deb'. dpkg-deb: building package 'acedb-other' in '../acedb-other_4.9.39+dfsg.02-4_amd64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../acedb_4.9.39+dfsg.02-4_amd64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2724312 and its subdirectories I: Current time: Sun Nov 28 17:09:55 -12 2021 I: pbuilder-time-stamp: 1638162595 Mon Nov 29 05:09:56 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos5-amd64.debian.net. Mon Nov 29 05:09:56 UTC 2021 I: Preparing to do remote build '2' on ionos5-amd64.debian.net. Mon Nov 29 05:13:19 UTC 2021 I: Deleting $TMPDIR on ionos5-amd64.debian.net. Mon Nov 29 05:13:19 UTC 2021 I: acedb_4.9.39+dfsg.02-4_amd64.changes: Format: 1.8 Date: Fri, 26 Oct 2018 16:08:53 +0200 Source: acedb Binary: acedb-other acedb-other-belvu acedb-other-dbgsym acedb-other-dotter Architecture: all amd64 Version: 4.9.39+dfsg.02-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: acedb-other - retrieval of DNA or protein sequences acedb-other-belvu - transitional package for belvu acedb-other-dotter - transitional package for dotter Changes: acedb (4.9.39+dfsg.02-4) unstable; urgency=medium . [ Jelmer Vernooij ] * Trim trailing whitespace. . [ Andreas Tille ] * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target * Remove trailing whitespace in debian/copyright Checksums-Sha1: 4666c1ad0e06c564c53f431b1e6109ded8f2a608 5456 acedb-other-belvu_4.9.39+dfsg.02-4_all.deb b4d2d1089a3b6f02a94f9414b98d5a5a0f1d32f5 21924 acedb-other-dbgsym_4.9.39+dfsg.02-4_amd64.deb aff0d1e88bb981ef611ff3a6a00cda767eddac6d 5456 acedb-other-dotter_4.9.39+dfsg.02-4_all.deb ccf174950d068116aa0b6cf28f14b1db70a60167 17876 acedb-other_4.9.39+dfsg.02-4_amd64.deb 64d30503f8d1fd4398cd80831696aa0d52506e08 10993 acedb_4.9.39+dfsg.02-4_amd64.buildinfo Checksums-Sha256: d09a4603ec9b16b6521f3033555f9d772e0c3c0318b0483723704b7e6adc20b1 5456 acedb-other-belvu_4.9.39+dfsg.02-4_all.deb 7c58d5eaabec9b928304206f307afb61d73515723eda66322e81083d1819c198 21924 acedb-other-dbgsym_4.9.39+dfsg.02-4_amd64.deb bd233a7f83fdcf817502182974b72bcba5783128ad3feb7ed10f831fbe200846 5456 acedb-other-dotter_4.9.39+dfsg.02-4_all.deb 690cc813e7ecbb8ad5f46f2eb0f0ea8b8dfae5c8a087fdb546049ec22642a443 17876 acedb-other_4.9.39+dfsg.02-4_amd64.deb 9e55c82d6a043cdbc3769031a1a724d2c78b62f441bb4a4e3cae048ef2efdde4 10993 acedb_4.9.39+dfsg.02-4_amd64.buildinfo Files: ebffbc565659258d6f6f72309b226898 5456 oldlibs optional acedb-other-belvu_4.9.39+dfsg.02-4_all.deb d372976b5817f7e25b4e2a16e7a6078a 21924 debug optional acedb-other-dbgsym_4.9.39+dfsg.02-4_amd64.deb 84bc1d2759fe31425fae438e0d157898 5456 oldlibs optional acedb-other-dotter_4.9.39+dfsg.02-4_all.deb e3ea8c61fa828f832950d47966ab9dbc 17876 science optional acedb-other_4.9.39+dfsg.02-4_amd64.deb be2a72d969f261ffb34316674cceeb58 10993 science optional acedb_4.9.39+dfsg.02-4_amd64.buildinfo Mon Nov 29 05:13:20 UTC 2021 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.xV7zhxtsQo/acedb_4.9.39+dfsg.02-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.xV7zhxtsQo/acedb_4.9.39+dfsg.02-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.xV7zhxtsQo/acedb_4.9.39+dfsg.02-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.xV7zhxtsQo/b1/acedb_4.9.39+dfsg.02-4_amd64.changes /srv/reproducible-results/rbuild-debian/tmp.xV7zhxtsQo/b2/acedb_4.9.39+dfsg.02-4_amd64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.252s) 0.252s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.033s) 0.033s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile ## specialize (total time: 0.001s) 0.001s 1 call specialize Mon Nov 29 05:13:21 UTC 2021 I: found no differences in the changes files, and a .buildinfo file also exists. Mon Nov 29 05:13:21 UTC 2021 I: acedb from buster built successfully and reproducibly on amd64. Mon Nov 29 05:13:22 UTC 2021 I: Submitting .buildinfo files to external archives: Mon Nov 29 05:13:22 UTC 2021 I: Submitting 12K b1/acedb_4.9.39+dfsg.02-4_amd64.buildinfo.asc Mon Nov 29 05:13:23 UTC 2021 I: Submitting 12K b2/acedb_4.9.39+dfsg.02-4_amd64.buildinfo.asc Mon Nov 29 05:13:24 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Nov 29 05:13:24 UTC 2021 I: Done submitting .buildinfo files. Mon Nov 29 05:13:24 UTC 2021 I: Removing signed acedb_4.9.39+dfsg.02-4_amd64.buildinfo.asc files: removed './b1/acedb_4.9.39+dfsg.02-4_amd64.buildinfo.asc' removed './b2/acedb_4.9.39+dfsg.02-4_amd64.buildinfo.asc'