Sun Jan 14 20:51:00 UTC 2024 I: starting to build weka/bullseye/i386 on jenkins on '2024-01-14 20:50' Sun Jan 14 20:51:00 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_6/10996/console.log Sun Jan 14 20:51:00 UTC 2024 I: Downloading source for bullseye/weka=3.6.14-2 --2024-01-14 20:51:01-- http://cdn-fastly.deb.debian.org/debian/pool/main/w/weka/weka_3.6.14-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2101 (2.1K) [text/prs.lines.tag] Saving to: ‘weka_3.6.14-2.dsc’ 0K .. 100% 240M=0s 2024-01-14 20:51:01 (240 MB/s) - ‘weka_3.6.14-2.dsc’ saved [2101/2101] Sun Jan 14 20:51:01 UTC 2024 I: weka_3.6.14-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: weka Binary: weka, weka-doc Architecture: all Version: 3.6.14-2 Maintainer: Debian Java Maintainers Uploaders: Torsten Werner , tony mancill Homepage: http://www.cs.waikato.ac.nz/~ml/weka/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/java-team/weka Vcs-Git: https://salsa.debian.org/java-team/weka.git Build-Depends: ant, cup (>= 0.11a+20060608), debhelper-compat (= 13), default-jdk, ghostscript, jflex, texlive-latex-base, texlive-latex-extra Package-List: weka deb science optional arch=all weka-doc deb doc optional arch=all Checksums-Sha1: c9ea3a19af3833ec738dc73b411588e8bb7bbdfe 14523273 weka_3.6.14.orig.tar.gz 71a7340aa51d1a1a2ce08e2eb9d91177c4d9dd67 10452 weka_3.6.14-2.debian.tar.xz Checksums-Sha256: bef592188ef4da3488c6043e782c6c8cea42877364d8a2be68d4d61b9a602368 14523273 weka_3.6.14.orig.tar.gz 5c220d9d6bdb5d89da3f4988e633dd8340a1f5b1c2ae241d2929dac2ec9ac468 10452 weka_3.6.14-2.debian.tar.xz Files: 84f07483989d7c9ee46b433aa9571652 14523273 weka_3.6.14.orig.tar.gz 6b42ac5557daabaad4901c05b3836413 10452 weka_3.6.14-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEuM5N4hCA3PkD4WxA9RPEGeS50KwFAmAhSMYSHGVib3VyZ0Bh cGFjaGUub3JnAAoJEPUTxBnkudCsF9EQAJUOvxJYbOlU0nrosMfWWq5n+0DLkkJK hZ4NVE6wMSkB6C7wIfvurq0H17EC2Okz/W5Rvj7G+ytB5loHsPq56/a/Zf6XLalo aVOuwy6bOqFZ4Af+2y90NvRabaMotjtXMg4CVLgqCz0NDdwjU1FtMt5Xg3qnjxIk wgk9ez8nVWYlRrQhoi/E0ha12AdjYqyMZKh56IvP5hYByLj6Gf94MnE5EjHi96/J 0wTTDrDjRJ3XRCdU79sqCaxvWWtLqAVjQDK+EVgBvuvfi6HAC74HE7AwC3N5oENk qqFx6doHmPr/0ZazYJq8cXkfn4mAem6BlN/EkQDTsv4cz/K2nJdIcFwbPJU//ltD rEInP3e9s/Lj+p/tSrQ3nWHiI7ciRFdCuV+70XBncpMs9n0dEx8oJC9T1ysMV552 NtgpB2WeG7QKwIX0UT9gcwl1eVQe8rEu0vInOGrn0+LU/LwOB5hvIZrLj9BuoWBf W1zcvGaftecvxBphQCrFpTNICzM/U05UMlrqfjVV6mbL6cs53dXN1BG2BzRwGDtU neYOUQ4ZKStydgyD/wOg0tgehRN8uDmrW6n055/RADhpPMbdVzUCRMXUld37gs7S wtwt1RwNKeOPWlU3ixovJSdWGH9k5t3G8zYgueiXBYHnsSKNBwhvND4sNw1IAMoA HpeqnE5YyoGB =p0ku -----END PGP SIGNATURE----- Sun Jan 14 20:51:01 UTC 2024 I: Checking whether the package is not for us Sun Jan 14 20:51:01 UTC 2024 I: Starting 1st build on remote node ionos6-i386.debian.net. Sun Jan 14 20:51:01 UTC 2024 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Sun Jan 14 20:54:46 UTC 2024 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Feb 15 15:14:05 -12 2025 I: pbuilder-time-stamp: 1739675645 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [weka_3.6.14-2.dsc] I: copying [./weka_3.6.14.orig.tar.gz] I: copying [./weka_3.6.14-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.CL5d6Tsv/trustedkeys.kbx': General error gpgv: Signature made Mon Feb 8 14:20:54 2021 gpgv: using RSA key B8CE4DE21080DCF903E16C40F513C419E4B9D0AC gpgv: issuer "ebourg@apache.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./weka_3.6.14-2.dsc dpkg-source: info: extracting weka in weka-3.6.14 dpkg-source: info: unpacking weka_3.6.14.orig.tar.gz dpkg-source: info: unpacking weka_3.6.14-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying jar.patch dpkg-source: info: applying disable-rmic-static-stub.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4959/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='000217fc05c94bcfadf4db0414ea65cf' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4959' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.8oUMLR5T/pbuilderrc_XSxx --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.8oUMLR5T/b1 --logfile b1/build.log weka_3.6.14-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos6-i386 6.1.0-17-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) x86_64 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Mar 27 2022 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Jan 20 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 7 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 7 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep -rwxr-xr-x 1 root root 71928 Jan 20 2022 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 210488 Jan 25 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip -rwxr-xr-x 1 root root 21916 Nov 7 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Jan 20 2022 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Jan 20 2022 more -rwsr-xr-x 1 root root 50720 Jan 20 2022 mount -rwxr-xr-x 1 root root 13856 Jan 20 2022 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 7 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Feb 8 15:47 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Jan 20 2022 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 17 2021 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Jan 20 2022 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Jan 20 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 7 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/4959/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: ant, cup (>= 0.11a+20060608), debhelper-compat (= 13), default-jdk, ghostscript, jflex, texlive-latex-base, texlive-latex-extra dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 17763 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on ant; however: Package ant is not installed. pbuilder-satisfydepends-dummy depends on cup (>= 0.11a+20060608); however: Package cup is not installed. pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. pbuilder-satisfydepends-dummy depends on ghostscript; however: Package ghostscript is not installed. pbuilder-satisfydepends-dummy depends on jflex; however: Package jflex is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-base; however: Package texlive-latex-base is not installed. pbuilder-satisfydepends-dummy depends on texlive-latex-extra; however: Package texlive-latex-extra is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: ant{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} cup{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} fonts-urw-base35{a} gettext{a} gettext-base{a} ghostscript{a} groff-base{a} intltool-debian{a} java-common{a} jflex{a} libapache-pom-java{a} libarchive-zip-perl{a} libasound2{a} libasound2-data{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-intel1{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontbox-java{a} libfontconfig1{a} libfreetype6{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgs9{a} libgs9-common{a} libharfbuzz0b{a} libice6{a} libicu67{a} libidn11{a} libijs-0.35{a} libjbig0{a} libjbig2dec0{a} libjpeg62-turbo{a} libkpathsea6{a} liblcms2-2{a} libllvm11{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libnspr4{a} libnss3{a} libopenjp2-7{a} libpaper-utils{a} libpaper1{a} libpciaccess0{a} libpcsclite1{a} libpdfbox-java{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libptexenc1{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsensors-config{a} libsensors5{a} libsigsegv2{a} libsm6{a} libsub-override-perl{a} libsynctex2{a} libteckit0{a} libtexlua53{a} libtexluajit2{a} libtiff5{a} libtool{a} libuchardet0{a} libvulkan1{a} libwebp6{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxaw7{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxshmfence1{a} libxt6{a} libxtst6{a} libxxf86vm1{a} libz3-4{a} libzzip-0-13{a} m4{a} man-db{a} media-types{a} openjdk-11-jdk{a} openjdk-11-jdk-headless{a} openjdk-11-jre{a} openjdk-11-jre-headless{a} openssl{a} po-debconf{a} poppler-data{a} preview-latex-style{a} python3{a} python3-minimal{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-latex-base{a} texlive-latex-extra{a} texlive-latex-recommended{a} texlive-pictures{a} tzdata{a} ucf{a} x11-common{a} xdg-utils{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf ant-optional curl dbus dvisvgm fonts-dejavu-extra fonts-droid-fallback libarchive-cpio-perl libatk-wrapper-java-jni libfile-mimeinfo-perl libglib2.0-data libltdl-dev libmail-sendmail-perl libnet-dbus-perl libx11-protocol-perl libxt-dev lmodern lynx mesa-vulkan-drivers ruby shared-mime-info texlive-fonts-recommended texlive-plain-generic tk wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 172 newly installed, 0 to remove and 0 not upgraded. Need to get 282 MB of archives. After unpacking 845 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-8+deb11u1 [149 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 poppler-data all 0.4.10-1 [1602 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libpython3.9-minimal i386 3.9.2-1 [801 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2+deb11u5 [101 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 python3.9-minimal i386 3.9.2-1 [1956 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 python3-minimal i386 3.9.2-3 [38.2 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 media-types all 4.0.0 [30.3 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 tzdata all 2021a-1+deb11u10 [286 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 libmpdec3 i386 2.5.1-1 [91.9 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 readline-common all 8.1-1 [73.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 libreadline8 i386 8.1-1 [173 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 libpython3.9-stdlib i386 3.9.2-1 [1703 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 python3.9 i386 3.9.2-1 [466 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 libpython3-stdlib i386 3.9.2-3 [21.4 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 python3 i386 3.9.2-3 [37.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 ucf all 3.0043 [74.0 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 tex-common all 6.16 [53.7 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 openssl i386 1.1.1w-0+deb11u1 [869 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 ca-certificates all 20210119 [158 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3+deb11u1 [273 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3+deb11u1 [135 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3+deb11u1 [69.2 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 libnspr4 i386 2:4.29-1 [122 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 libnss3 i386 2:3.61-1+deb11u3 [1385 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 ca-certificates-java all 20190909+deb11u1 [15.9 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 java-common all 0.72 [14.5 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 libavahi-common-data i386 0.8-5+deb11u2 [124 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 libavahi-common3 i386 0.8-5+deb11u2 [60.4 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 libdbus-1-3 i386 1.12.28-0+deb11u1 [236 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 libavahi-client3 i386 0.8-5+deb11u2 [64.6 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 libcups2 i386 2.3.3op2-3+deb11u6 [367 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 liblcms2-2 i386 2.12~rc1-2 [161 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libjpeg62-turbo i386 1:2.0.6-4 [160 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 libpng16-16 i386 1.6.37-3 [303 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 libfreetype6 i386 2.10.4+dfsg-1+deb11u1 [430 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 fonts-dejavu-core all 2.37-2 [1069 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 fonts-urw-base35 all 20200910-1 [6367 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 fontconfig-config all 2.13.1-4.2 [281 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 libfontconfig1 i386 2.13.1-4.2 [358 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 libasound2-data all 1.2.4-1.1 [38.2 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 libasound2 i386 1.2.4-1.1 [379 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 libglib2.0-0 i386 2.66.8-1 [1437 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 libharfbuzz0b i386 2.7.4-1 [1490 kB] Get: 52 http://deb.debian.org/debian bullseye/main i386 libpcsclite1 i386 1.9.1-1 [61.7 kB] Get: 53 http://deb.debian.org/debian bullseye/main i386 openjdk-11-jre-headless i386 11.0.20+8-1~deb11u1 [38.2 MB] Get: 54 http://deb.debian.org/debian bullseye/main i386 default-jre-headless i386 2:1.11-72 [10.9 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 ant all 1.10.9-4 [2118 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 57 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 58 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 59 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 60 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 61 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 62 http://deb.debian.org/debian bullseye/main i386 cup all 0.11b-20160615-2 [155 kB] Get: 63 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 64 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 65 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 66 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 67 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 68 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 69 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 70 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 71 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 72 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-7 [8775 kB] Get: 73 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7+deb11u4 [728 kB] Get: 74 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 75 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 76 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 77 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 78 http://deb.debian.org/debian bullseye/main i386 libglvnd0 i386 1.3.2-1 [44.1 kB] Get: 79 http://deb.debian.org/debian bullseye/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 80 http://deb.debian.org/debian bullseye/main i386 libmd0 i386 1.0.3-3 [28.9 kB] Get: 81 http://deb.debian.org/debian bullseye/main i386 libbsd0 i386 0.11.3-1+deb11u1 [111 kB] Get: 82 http://deb.debian.org/debian bullseye/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 83 http://deb.debian.org/debian bullseye/main i386 libxcb1 i386 1.14-3 [144 kB] Get: 84 http://deb.debian.org/debian bullseye/main i386 libx11-data all 2:1.7.2-1+deb11u1 [311 kB] Get: 85 http://deb.debian.org/debian bullseye/main i386 libx11-6 i386 2:1.7.2-1+deb11u1 [796 kB] Get: 86 http://deb.debian.org/debian bullseye/main i386 libdrm-common all 2.4.104-1 [14.9 kB] Get: 87 http://deb.debian.org/debian bullseye/main i386 libdrm2 i386 2.4.104-1 [44.3 kB] Get: 88 http://deb.debian.org/debian bullseye/main i386 libglapi-mesa i386 20.3.5-1 [71.9 kB] Get: 89 http://deb.debian.org/debian bullseye/main i386 libx11-xcb1 i386 2:1.7.2-1+deb11u1 [203 kB] Get: 90 http://deb.debian.org/debian bullseye/main i386 libxcb-dri2-0 i386 1.14-3 [103 kB] Get: 91 http://deb.debian.org/debian bullseye/main i386 libxcb-dri3-0 i386 1.14-3 [103 kB] Get: 92 http://deb.debian.org/debian bullseye/main i386 libxcb-glx0 i386 1.14-3 [120 kB] Get: 93 http://deb.debian.org/debian bullseye/main i386 libxcb-present0 i386 1.14-3 [101 kB] Get: 94 http://deb.debian.org/debian bullseye/main i386 libxcb-shm0 i386 1.14-3 [102 kB] Get: 95 http://deb.debian.org/debian bullseye/main i386 libxcb-sync1 i386 1.14-3 [105 kB] Get: 96 http://deb.debian.org/debian bullseye/main i386 libxcb-xfixes0 i386 1.14-3 [105 kB] Get: 97 http://deb.debian.org/debian bullseye/main i386 libxdamage1 i386 1:1.1.5-2 [15.9 kB] Get: 98 http://deb.debian.org/debian bullseye/main i386 libxext6 i386 2:1.3.3-1.1 [55.2 kB] Get: 99 http://deb.debian.org/debian bullseye/main i386 libxfixes3 i386 1:5.0.3-2 [22.6 kB] Get: 100 http://deb.debian.org/debian bullseye/main i386 libxshmfence1 i386 1.3-1 [8976 B] Get: 101 http://deb.debian.org/debian bullseye/main i386 libxxf86vm1 i386 1:1.1.4-1+b2 [21.7 kB] Get: 102 http://deb.debian.org/debian bullseye/main i386 libdrm-amdgpu1 i386 2.4.104-1 [31.5 kB] Get: 103 http://deb.debian.org/debian bullseye/main i386 libpciaccess0 i386 0.16-1 [55.7 kB] Get: 104 http://deb.debian.org/debian bullseye/main i386 libdrm-intel1 i386 2.4.104-1 [74.5 kB] Get: 105 http://deb.debian.org/debian bullseye/main i386 libdrm-nouveau2 i386 2.4.104-1 [28.5 kB] Get: 106 http://deb.debian.org/debian bullseye/main i386 libdrm-radeon1 i386 2.4.104-1 [31.4 kB] Get: 107 http://deb.debian.org/debian bullseye/main i386 libedit2 i386 3.1-20191231-2+b1 [101 kB] Get: 108 http://deb.debian.org/debian bullseye/main i386 libz3-4 i386 4.8.10-1 [7737 kB] Get: 109 http://deb.debian.org/debian bullseye/main i386 libllvm11 i386 1:11.0.1-2 [17.7 MB] Get: 110 http://deb.debian.org/debian bullseye/main i386 libsensors-config all 1:3.6.0-7 [32.3 kB] Get: 111 http://deb.debian.org/debian bullseye/main i386 libsensors5 i386 1:3.6.0-7 [53.2 kB] Get: 112 http://deb.debian.org/debian bullseye/main i386 libvulkan1 i386 1.2.162.0-1 [110 kB] Get: 113 http://deb.debian.org/debian bullseye/main i386 libgl1-mesa-dri i386 20.3.5-1 [9948 kB] Get: 114 http://deb.debian.org/debian bullseye/main i386 libglx-mesa0 i386 20.3.5-1 [195 kB] Get: 115 http://deb.debian.org/debian bullseye/main i386 libglx0 i386 1.3.2-1 [39.1 kB] Get: 116 http://deb.debian.org/debian bullseye/main i386 libgl1 i386 1.3.2-1 [83.6 kB] Get: 117 http://deb.debian.org/debian bullseye/main i386 libgif7 i386 5.1.9-2 [46.5 kB] Get: 118 http://deb.debian.org/debian bullseye/main i386 libxi6 i386 2:1.7.10-1 [85.1 kB] Get: 119 http://deb.debian.org/debian bullseye/main i386 libxrender1 i386 1:0.9.10-1 [34.1 kB] Get: 120 http://deb.debian.org/debian bullseye/main i386 x11-common all 1:7.7+22 [252 kB] Get: 121 http://deb.debian.org/debian bullseye/main i386 libxtst6 i386 2:1.2.3-1 [28.3 kB] Get: 122 http://deb.debian.org/debian bullseye/main i386 openjdk-11-jre i386 11.0.20+8-1~deb11u1 [195 kB] Get: 123 http://deb.debian.org/debian bullseye/main i386 default-jre i386 2:1.11-72 [1044 B] Get: 124 http://deb.debian.org/debian bullseye/main i386 openjdk-11-jdk-headless i386 11.0.20+8-1~deb11u1 [70.9 MB] Get: 125 http://deb.debian.org/debian bullseye/main i386 default-jdk-headless i386 2:1.11-72 [1100 B] Get: 126 http://deb.debian.org/debian bullseye/main i386 openjdk-11-jdk i386 11.0.20+8-1~deb11u1 [2052 kB] Get: 127 http://deb.debian.org/debian bullseye/main i386 default-jdk i386 2:1.11-72 [1052 B] Get: 128 http://deb.debian.org/debian bullseye/main i386 fonts-lmodern all 2.004.5-6.1 [4540 kB] Get: 129 http://deb.debian.org/debian bullseye/main i386 libgs9-common all 9.53.3~dfsg-7+deb11u6 [735 kB] Get: 130 http://deb.debian.org/debian bullseye/main i386 libidn11 i386 1.33-3 [117 kB] Get: 131 http://deb.debian.org/debian bullseye/main i386 libijs-0.35 i386 0.35-15 [16.9 kB] Get: 132 http://deb.debian.org/debian bullseye/main i386 libjbig2dec0 i386 0.19-2 [69.9 kB] Get: 133 http://deb.debian.org/debian bullseye/main i386 libopenjp2-7 i386 2.4.0-3 [179 kB] Get: 134 http://deb.debian.org/debian bullseye/main i386 libpaper1 i386 1.1.28+b1 [21.7 kB] Get: 135 http://deb.debian.org/debian bullseye/main i386 libdeflate0 i386 1.7-1 [48.4 kB] Get: 136 http://deb.debian.org/debian bullseye/main i386 libjbig0 i386 2.1-3.1+b2 [31.5 kB] Get: 137 http://deb.debian.org/debian bullseye/main i386 libwebp6 i386 0.6.1-2.1+deb11u2 [269 kB] Get: 138 http://deb.debian.org/debian bullseye/main i386 libtiff5 i386 4.2.0-1+deb11u4 [305 kB] Get: 139 http://deb.debian.org/debian bullseye/main i386 libgs9 i386 9.53.3~dfsg-7+deb11u6 [2365 kB] Get: 140 http://deb.debian.org/debian bullseye/main i386 ghostscript i386 9.53.3~dfsg-7+deb11u6 [98.4 kB] Get: 141 http://deb.debian.org/debian bullseye/main i386 jflex all 1.7.0-2 [1702 kB] Get: 142 http://deb.debian.org/debian bullseye/main i386 libapache-pom-java all 18-1 [4676 B] Get: 143 http://deb.debian.org/debian bullseye/main i386 libpixman-1-0 i386 0.40.0-1.1~deb11u1 [545 kB] Get: 144 http://deb.debian.org/debian bullseye/main i386 libxcb-render0 i386 1.14-3 [112 kB] Get: 145 http://deb.debian.org/debian bullseye/main i386 libcairo2 i386 1.16.0-5 [746 kB] Get: 146 http://deb.debian.org/debian bullseye/main i386 libcommons-parent-java all 43-1 [10.8 kB] Get: 147 http://deb.debian.org/debian bullseye/main i386 libcommons-logging-java all 1.2-2 [62.2 kB] Get: 148 http://deb.debian.org/debian bullseye/main i386 libfontbox-java all 1:1.8.16-2 [211 kB] Get: 149 http://deb.debian.org/debian bullseye/main i386 libice6 i386 2:1.0.10-1 [60.8 kB] Get: 150 http://deb.debian.org/debian bullseye/main i386 libkpathsea6 i386 2020.20200327.54578-7+deb11u1 [176 kB] Get: 151 http://deb.debian.org/debian bullseye/main i386 libpaper-utils i386 1.1.28+b1 [18.6 kB] Get: 152 http://deb.debian.org/debian bullseye/main i386 libpdfbox-java all 1:1.8.16-2 [5205 kB] Get: 153 http://deb.debian.org/debian bullseye/main i386 libptexenc1 i386 2020.20200327.54578-7+deb11u1 [65.2 kB] Get: 154 http://deb.debian.org/debian bullseye/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB] Get: 155 http://deb.debian.org/debian bullseye/main i386 libsynctex2 i386 2020.20200327.54578-7+deb11u1 [86.1 kB] Get: 156 http://deb.debian.org/debian bullseye/main i386 libteckit0 i386 2.5.10+ds1-3 [277 kB] Get: 157 http://deb.debian.org/debian bullseye/main i386 libtexlua53 i386 2020.20200327.54578-7+deb11u1 [146 kB] Get: 158 http://deb.debian.org/debian bullseye/main i386 libtexluajit2 i386 2020.20200327.54578-7+deb11u1 [284 kB] Get: 159 http://deb.debian.org/debian bullseye/main i386 libxt6 i386 1:1.2.0-1 [195 kB] Get: 160 http://deb.debian.org/debian bullseye/main i386 libxmu6 i386 2:1.1.2-2+b3 [62.8 kB] Get: 161 http://deb.debian.org/debian bullseye/main i386 libxpm4 i386 1:3.5.12-1.1~deb11u1 [51.2 kB] Get: 162 http://deb.debian.org/debian bullseye/main i386 libxaw7 i386 2:1.0.13-1.1 [210 kB] Get: 163 http://deb.debian.org/debian bullseye/main i386 libzzip-0-13 i386 0.13.62-3.3+deb11u1 [57.7 kB] Get: 164 http://deb.debian.org/debian bullseye/main i386 preview-latex-style all 12.2-1 [201 kB] Get: 165 http://deb.debian.org/debian bullseye/main i386 t1utils i386 1.41-4 [62.3 kB] Get: 166 http://deb.debian.org/debian bullseye/main i386 texlive-binaries i386 2020.20200327.54578-7+deb11u1 [10.1 MB] Get: 167 http://deb.debian.org/debian bullseye/main i386 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 168 http://deb.debian.org/debian bullseye/main i386 texlive-base all 2020.20210202-3 [20.8 MB] Get: 169 http://deb.debian.org/debian bullseye/main i386 texlive-latex-base all 2020.20210202-3 [1120 kB] Get: 170 http://deb.debian.org/debian bullseye/main i386 texlive-latex-recommended all 2020.20210202-3 [14.5 MB] Get: 171 http://deb.debian.org/debian bullseye/main i386 texlive-pictures all 2020.20210202-3 [6743 kB] Get: 172 http://deb.debian.org/debian bullseye/main i386 texlive-latex-extra all 2020.20210202-3 [13.7 MB] Fetched 282 MB in 5s (59.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17763 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8+deb11u1_i386.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../1-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../3-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package poppler-data. Preparing to unpack .../5-poppler-data_0.4.10-1_all.deb ... Unpacking poppler-data (0.4.10-1) ... Selecting previously unselected package libpython3.9-minimal:i386. Preparing to unpack .../6-libpython3.9-minimal_3.9.2-1_i386.deb ... Unpacking libpython3.9-minimal:i386 (3.9.2-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../7-libexpat1_2.2.10-2+deb11u5_i386.deb ... Unpacking libexpat1:i386 (2.2.10-2+deb11u5) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../8-python3.9-minimal_3.9.2-1_i386.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:i386 (3.9.2-1) ... Setting up libexpat1:i386 (2.2.10-2+deb11u5) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19164 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_i386.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package tzdata. Preparing to unpack .../2-tzdata_2021a-1+deb11u10_all.deb ... Unpacking tzdata (2021a-1+deb11u10) ... Selecting previously unselected package libmpdec3:i386. Preparing to unpack .../3-libmpdec3_2.5.1-1_i386.deb ... Unpacking libmpdec3:i386 (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:i386. Preparing to unpack .../5-libreadline8_8.1-1_i386.deb ... Unpacking libreadline8:i386 (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:i386. Preparing to unpack .../6-libpython3.9-stdlib_3.9.2-1_i386.deb ... Unpacking libpython3.9-stdlib:i386 (3.9.2-1) ... 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Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libsensors-config (1:3.6.0-7) ... Setting up libmagic1:i386 (1:5.39-3+deb11u1) ... Setting up libdeflate0:i386 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up libzzip-0-13:i386 (0.13.62-3.3+deb11u1) ... Setting up file (1:5.39-3+deb11u1) ... Setting up fonts-urw-base35 (20200910-1) ... Setting up libjbig0:i386 (2.1-3.1+b2) ... Setting up poppler-data (0.4.10-1) ... Setting up tzdata (2021a-1+deb11u10) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Feb 16 03:14:55 UTC 2025. Universal Time is now: Sun Feb 16 03:14:55 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libasound2-data (1.2.4-1.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libz3-4:i386 (4.8.10-1) ... Setting up libjpeg62-turbo:i386 (1:2.0.6-4) ... 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Setting up libxcb1:i386 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up libxcb-xfixes0:i386 (1.14-3) ... Setting up libpdfbox-java (1:1.8.16-2) ... Setting up libtool (2.4.6-15) ... Setting up libxcb-render0:i386 (1.14-3) ... Setting up libxcb-glx0:i386 (1.14-3) ... Setting up libedit2:i386 (3.1-20191231-2+b1) ... Setting up libreadline8:i386 (8.1-1) ... Setting up libcommons-parent-java (43-1) ... Setting up libavahi-common3:i386 (0.8-5+deb11u2) ... Setting up libcommons-logging-java (1.2-2) ... Setting up m4 (1.4.18-5) ... Setting up libnss3:i386 (2:3.61-1+deb11u3) ... Setting up libxcb-shm0:i386 (1.14-3) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxcb-present0:i386 (1.14-3) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libllvm11:i386 (1:11.0.1-2) ... Setting up libptexenc1:i386 (2020.20200327.54578-7+deb11u1) ... Setting up libfreetype6:i386 (2.10.4+dfsg-1+deb11u1) ... Setting up libxcb-sync1:i386 (1.14-3) ... Setting up ucf (3.0043) ... Setting up autoconf (2.69-14) ... Setting up libxcb-dri2-0:i386 (1.14-3) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up libdrm2:i386 (2.4.104-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libx11-6:i386 (2:1.7.2-1+deb11u1) ... Setting up libharfbuzz0b:i386 (2.7.4-1) ... Setting up libsm6:i386 (2:1.2.3-1) ... Setting up libavahi-client3:i386 (0.8-5+deb11u2) ... Setting up libpython3.9-stdlib:i386 (3.9.2-1) ... Setting up libpython3-stdlib:i386 (3.9.2-3) ... Setting up libdrm-amdgpu1:i386 (2.4.104-1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:i386 (1.14-3) ... Setting up libpaper1:i386 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up libx11-xcb1:i386 (2:1.7.2-1+deb11u1) ... Setting up libdrm-nouveau2:i386 (2.4.104-1) ... Setting up libxdamage1:i386 (1:1.1.5-2) ... Setting up libxpm4:i386 (1:3.5.12-1.1~deb11u1) ... Setting up libxrender1:i386 (1:0.9.10-1) ... Setting up libdrm-radeon1:i386 (2.4.104-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libdrm-intel1:i386 (2.4.104-1) ... Setting up libgl1-mesa-dri:i386 (20.3.5-1) ... Setting up libxext6:i386 (2:1.3.3-1.1) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxxf86vm1:i386 (1:1.1.4-1+b2) ... Setting up dh-autoreconf (20) ... Setting up tex-common (6.16) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libxfixes3:i386 (1:5.0.3-2) ... Setting up libxt6:i386 (1:1.2.0-1) ... Setting up libcups2:i386 (2.3.3op2-3+deb11u6) ... Setting up libfontconfig1:i386 (2.13.1-4.2) ... Setting up python3.9 (3.9.2-1) ... Setting up libxmu6:i386 (2:1.1.2-2+b3) ... Setting up libglx-mesa0:i386 (20.3.5-1) ... Setting up libgs9:i386 (9.53.3~dfsg-7+deb11u6) ... Setting up libxi6:i386 (2:1.7.10-1) ... Setting up libglx0:i386 (1.3.2-1) ... Setting up libxtst6:i386 (2:1.2.3-1) ... Setting up preview-latex-style (12.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up libxaw7:i386 (2:1.0.13-1.1) ... Setting up ghostscript (9.53.3~dfsg-7+deb11u6) ... Setting up libcairo2:i386 (1.16.0-5) ... Setting up libgl1:i386 (1.3.2-1) ... Setting up texlive-binaries (2020.20200327.54578-7+deb11u1) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2020.20210202-3) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up texlive-latex-base (2020.20210202-3) ... Setting up texlive-latex-recommended (2020.20210202-3) ... Setting up texlive-pictures (2020.20210202-3) ... Setting up texlive-latex-extra (2020.20210202-3) ... Setting up default-jre-headless (2:1.11-72) ... Setting up openjdk-11-jre-headless:i386 (11.0.20+8-1~deb11u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode OpenJDK Client VM warning: Ignoring option PermSize; support was removed in 8.0 Setting up openjdk-11-jre:i386 (11.0.20+8-1~deb11u1) ... 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Setting up default-jdk-headless (2:1.11-72) ... Setting up ant (1.10.9-4) ... Setting up openjdk-11-jdk:i386 (11.0.20+8-1~deb11u1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-i386/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up ca-certificates-java (20190909+deb11u1) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:DigiCert_Global_Root_G3.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:DST_Root_CA_X3.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:GTS_Root_R1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:EC-ACC.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:ISRG_Root_X1.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Izenpe.com.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:AffirmTrust_Networking.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:ACCVRAIZ1.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:GTS_Root_R2.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:GTS_Root_R4.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Certigna_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TrustCor_ECA-1.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Secure_Global_CA.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:SecureTrust_CA.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:SecureSign_RootCA11.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:GTS_Root_R3.pem done. Setting up cup (0.11b-20160615-2) ... Setting up jflex (1.7.0-2) ... Setting up default-jdk (2:1.11-72) ... Processing triggers for libc-bin (2.31-13+deb11u6) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Processing triggers for tex-common (6.16) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/weka-3.6.14/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../weka_3.6.14-2_source.changes dpkg-buildpackage: info: source package weka dpkg-buildpackage: info: source version 3.6.14-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Emmanuel Bourg dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean dh_auto_clean ant clean Buildfile: /build/reproducible-path/weka-3.6.14/build.xml init_all: [tstamp] Honouring environment variable SOURCE_DATE_EPOCH which has been set to 1612794021 clean: [delete] Deleting directory /build/reproducible-path/weka-3.6.14/doc BUILD SUCCESSFUL Total time: 0 seconds dh_clean debian/rules build dh build dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/weka-3.6.14' dh_auto_build -- exejar docs ant -Duser.name debian exejar docs Buildfile: /build/reproducible-path/weka-3.6.14/build.xml init_all: [tstamp] Honouring environment variable SOURCE_DATE_EPOCH which has been set to 1612794021 init_compile: [mkdir] Created dir: /build/reproducible-path/weka-3.6.14/build/classes compile: [javac] Using javac -source 1.5 is no longer supported, switching to 6 [javac] Using javac -target 1.5 is no longer supported, switching to 6 [javac] Compiling 1053 source files to /build/reproducible-path/weka-3.6.14/build/classes [javac] warning: [options] bootstrap class path not set in conjunction with -source 6 [javac] warning: [options] source value 6 is obsolete and will be removed in a future release [javac] warning: [options] target value 1.6 is obsolete and will be removed in a future release [javac] warning: [options] To suppress warnings about obsolete options, use -Xlint:-options. [javac] Note: Some input files use or override a deprecated API. [javac] Note: Recompile with -Xlint:deprecation for details. [javac] Note: Some input files use unchecked or unsafe operations. [javac] Note: Recompile with -Xlint:unchecked for details. [javac] 4 warnings [copy] Copying 505 files to /build/reproducible-path/weka-3.6.14/build/classes init_dist: [mkdir] Created dir: /build/reproducible-path/weka-3.6.14/dist exejar: [jar] Building jar: /build/reproducible-path/weka-3.6.14/dist/weka.jar init_all: [tstamp] Honouring environment variable SOURCE_DATE_EPOCH which has been set to 1612794021 docs: [mkdir] Created dir: /build/reproducible-path/weka-3.6.14/doc [javadoc] Generating Javadoc [javadoc] Debian build on Java 9+ detected: Adding the --ignore-source-errors option [javadoc] Debian build on Java 9+ detected: Adding the -Xdoclint:none option [javadoc] Javadoc execution [javadoc] Loading source files for package weka.associations... [javadoc] Loading source files for package weka.associations.gsp... [javadoc] Loading source files for package weka.associations.tertius... [javadoc] Loading source files for package weka.attributeSelection... [javadoc] Loading source files for package weka.classifiers... [javadoc] Loading source files for package weka.classifiers.bayes... [javadoc] Loading source files for package weka.classifiers.bayes.blr... [javadoc] Loading source files for package weka.classifiers.bayes.net... [javadoc] Loading source files for package weka.classifiers.bayes.net.estimate... [javadoc] Loading source files for package weka.classifiers.bayes.net.search... [javadoc] Loading source files for package weka.classifiers.bayes.net.search.ci... [javadoc] Loading source files for package weka.classifiers.bayes.net.search.fixed... [javadoc] Loading source files for package weka.classifiers.bayes.net.search.global... [javadoc] Loading source files for package weka.classifiers.bayes.net.search.local... [javadoc] Loading source files for package weka.classifiers.evaluation... [javadoc] Loading source files for package weka.classifiers.functions... [javadoc] Loading source files for package weka.classifiers.functions.neural... [javadoc] Loading source files for package weka.classifiers.functions.pace... [javadoc] Loading source files for package weka.classifiers.functions.supportVector... [javadoc] Loading source files for package weka.classifiers.lazy... [javadoc] Loading source files for package weka.classifiers.lazy.kstar... [javadoc] Loading source files for package weka.classifiers.meta... [javadoc] Loading source files for package weka.classifiers.meta.nestedDichotomies... [javadoc] Loading source files for package weka.classifiers.mi... [javadoc] Loading source files for package weka.classifiers.mi.supportVector... [javadoc] Loading source files for package weka.classifiers.misc... [javadoc] Loading source files for package weka.classifiers.pmml.consumer... [javadoc] Loading source files for package weka.classifiers.rules... [javadoc] Loading source files for package weka.classifiers.rules.part... [javadoc] Loading source files for package weka.classifiers.trees... [javadoc] Loading source files for package weka.classifiers.trees.adtree... [javadoc] Loading source files for package weka.classifiers.trees.ft... [javadoc] Loading source files for package weka.classifiers.trees.j48... [javadoc] Loading source files for package weka.classifiers.trees.lmt... [javadoc] Loading source files for package weka.classifiers.trees.m5... [javadoc] Loading source files for package weka.classifiers.xml... [javadoc] Loading source files for package weka.clusterers... [javadoc] Loading source files for package weka.clusterers.forOPTICSAndDBScan.DataObjects... [javadoc] Loading source files for package weka.clusterers.forOPTICSAndDBScan.Databases... [javadoc] Loading source files for package weka.clusterers.forOPTICSAndDBScan.OPTICS_GUI... [javadoc] Loading source files for package weka.clusterers.forOPTICSAndDBScan.Utils... [javadoc] Loading source files for package weka.core... [javadoc] Loading source files for package weka.core.converters... [javadoc] Loading source files for package weka.core.logging... [javadoc] Loading source files for package weka.core.mathematicalexpression... [javadoc] Loading source files for package weka.core.matrix... [javadoc] Loading source files for package weka.core.neighboursearch... [javadoc] Loading source files for package weka.core.neighboursearch.balltrees... [javadoc] Loading source files for package weka.core.neighboursearch.covertrees... [javadoc] Loading source files for package weka.core.neighboursearch.kdtrees... [javadoc] Loading source files for package weka.core.pmml... [javadoc] Loading source files for package weka.core.stemmers... [javadoc] Loading source files for package weka.core.tokenizers... [javadoc] Loading source files for package weka.core.xml... [javadoc] Loading source files for package weka.datagenerators... [javadoc] Loading source files for package weka.datagenerators.classifiers.classification... [javadoc] Loading source files for package weka.datagenerators.classifiers.regression... [javadoc] Loading source files for package weka.datagenerators.clusterers... [javadoc] Loading source files for package weka.estimators... [javadoc] Loading source files for package weka.experiment... [javadoc] Loading source files for package weka.experiment.xml... [javadoc] Loading source files for package weka.filters... [javadoc] Loading source files for package weka.filters.supervised.attribute... [javadoc] Loading source files for package weka.filters.supervised.instance... [javadoc] Loading source files for package weka.filters.unsupervised.attribute... [javadoc] Loading source files for package weka.filters.unsupervised.instance... [javadoc] Loading source files for package weka.filters.unsupervised.instance.subsetbyexpression... [javadoc] Loading source files for package weka.gui... [javadoc] Loading source files for package weka.gui.arffviewer... [javadoc] Loading source files for package weka.gui.beans... [javadoc] Loading source files for package weka.gui.beans.xml... [javadoc] Loading source files for package weka.gui.boundaryvisualizer... [javadoc] Loading source files for package weka.gui.experiment... [javadoc] Loading source files for package weka.gui.explorer... [javadoc] Loading source files for package weka.gui.graphvisualizer... [javadoc] Loading source files for package weka.gui.hierarchyvisualizer... [javadoc] Loading source files for package weka.gui.sql... [javadoc] Loading source files for package weka.gui.sql.event... [javadoc] Loading source files for package weka.gui.streams... [javadoc] Loading source files for package weka.gui.treevisualizer... [javadoc] Loading source files for package weka.gui.visualize... [javadoc] Loading source files for package weka.gui.visualize.plugins... [javadoc] Constructing Javadoc information... [javadoc] Standard Doclet version 11.0.20 [javadoc] Building tree for all the packages and classes... [javadoc] /build/reproducible-path/weka-3.6.14/src/main/java/weka/associations/AprioriItemSet.java:94: warning - invalid usage of tag & [javadoc] /build/reproducible-path/weka-3.6.14/src/main/java/weka/associations/AprioriItemSet.java:116: warning - invalid usage of tag & [javadoc] /build/reproducible-path/weka-3.6.14/src/main/java/weka/attributeSelection/LFSMethods.java:144: warning - invalid usage of tag > [javadoc] /build/reproducible-path/weka-3.6.14/src/main/java/weka/attributeSelection/LFSMethods.java:144: warning - invalid usage of tag > [javadoc] /build/reproducible-path/weka-3.6.14/src/main/java/weka/attributeSelection/LFSMethods.java:329: warning - invalid usage of tag > [javadoc] /build/reproducible-path/weka-3.6.14/src/main/java/weka/attributeSelection/LFSMethods.java:329: warning - invalid usage of tag > [javadoc] /build/reproducible-path/weka-3.6.14/src/main/java/weka/attributeSelection/LFSMethods.java:658: warning - @param argument "gr" is not a parameter name. [javadoc] /build/reproducible-path/weka-3.6.14/src/main/java/weka/attributeSelection/LinearForwardSelection.java:257: warning - invalid usage of tag < [javadoc] /build/reproducible-path/weka-3.6.14/src/main/java/weka/attributeSelection/LinearForwardSelection.java:257: warning - invalid usage of tag > [javadoc] /build/reproducible-path/weka-3.6.14/src/main/java/weka/attributeSelection/LinearForwardSelection.java:274: warning - invalid usage of tag < [javadoc] /build/reproducible-path/weka-3.6.14/src/main/java/weka/attributeSelection/LinearForwardSelection.java:274: warning - invalid usage of tag > [javadoc] /build/reproducible-path/weka-3.6.14/src/main/java/weka/attributeSelection/LinearForwardSelection.java:594: warning - @param argument "d" is not a parameter name. [javadoc] /build/reproducible-path/weka-3.6.14/src/main/java/weka/attributeSelection/LinearForwardSelection.java:737: warning - @param argument "ASEvaluator" is not a parameter name. 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[javadoc] 100 warnings BUILD SUCCESSFUL Total time: 29 seconds ( cd wekadocs/manual && \ latex manual.tex ; latex manual.tex ; latex manual.tex ; \ dvipdf manual.dvi ) This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=latex) restricted \write18 enabled. entering extended mode (./manual.tex LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-01-09> xparse <2020-03-03> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/epsfig.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/dvips.def)))) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hdvips.def (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pdfmark.def (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty)))) (./hyphenation.tex) (./extensions.tex) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-dvips.def) No file manual.aux. 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(./commandline.tex [7] Overfull \hbox (1.64569pt too wide) in paragraph at lines 46--46 []\OT1/cmtt/m/n/7 % Any relation to real weather is purely coincidental.[] Overfull \hbox (20.43309pt too wide) in paragraph at lines 39--54 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 56--70 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 72--87 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 89--104 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 106--120 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 122--141 [] Underfull \vbox (badness 1616) has occurred while \output is active [8] Overfull \hbox (16.8051pt too wide) in paragraph at lines 155--156 \OT1/cmtt/m/n/10 converters.CSVLoader\OT1/cmr/m/n/10 , which can be used to im- port C45 datasets and comma/tab- [9] Overfull \hbox (63.24817pt too wide) in paragraph at lines 166--167 \OT1/cmr/m/n/10 Any learn-ing al-go-rithm in WEKA is de-rived from the ab-strac t \OT1/cmtt/m/n/10 weka.classifiers.Classifier [10] [11] [12] Overfull \hbox (2.46945pt too wide) in paragraph at lines 375--376 []\OT1/cmtt/m/n/10 meta.ClassificationViaRegression -W functions.LinearRegressi on LaTeX Warning: Citation `platt98' on page 13 undefined on input line 377. [13] Overfull \hbox (20.43309pt too wide) in paragraph at lines 391--418 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 420--435 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 437--472 [] Underfull \vbox (badness 10000) has occurred while \output is active [14] Overfull \hbox (20.43309pt too wide) in paragraph at lines 474--511 [] [15] Overfull \hbox (0.61818pt too wide) in paragraph at lines 522--523 []\OT1/cmr/m/n/10 The \OT1/cmr/m/it/10 F-Measure \OT1/cmr/m/n/10 is sim-ply 2*P re-ci-sion*Recall/(Precision+Recall), a com-bined Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 0 diaporthe-stem-canker 0.9999672587892333 diaporthe-stem-can ker[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 1 diaporthe-stem-canker 0.9999992614503429 diaporthe-stem-can ker[] Overfull \hbox (6.6621pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 2 diaporthe-stem-canker 0.999998948559035 diaporthe-stem-cank er[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 3 diaporthe-stem-canker 0.9999998441238833 diaporthe-stem-can ker[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 4 diaporthe-stem-canker 0.9999989997681132 diaporthe-stem-can ker[] Overfull \hbox (2.9433pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 5 rhizoctonia-root-rot 0.9999999395928124 rhizoctonia-root-ro t[] Overfull \hbox (2.9433pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 7 rhizoctonia-root-rot 0.9999994386283236 rhizoctonia-root-ro t[] Underfull \hbox (badness 1953) in paragraph at lines 551--552 \OT1/cmr/m/n/10 dicted class value, the con-fi- Overfull \hbox (48.88585pt too wide) in paragraph at lines 533--555 [] Overfull \hbox (48.88585pt too wide) in paragraph at lines 557--580 [] Overfull \hbox (26.73993pt too wide) in paragraph at lines 592--593 \OT1/cmr/m/n/10 Dividing by the num-ber of in-stances in the test set, i.e. \OT 1/cmtt/m/n/10 wc -l < soybean-test.preds [16] (./includes/learning_curves.tex Overfull \hbox (67.78633pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.StratifiedRemoveFol ds -N 4 -F 1 -S $run -c last -i ../$f -o $run/t_$f[] Overfull \hbox (78.94272pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.StratifiedRemoveFol ds -N 4 -F 1 -S $run -V -c last -i ../$f -o $run/t0$f[] Overfull \hbox (38.03596pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.Resample -S 0 -Z 83 -c last -i $run/t$nr$f -o $run/t$nrp1$f[] [17]) Overfull \hbox (82.66151pt too wide) in paragraph at lines 663--663 [] \OT1/cmtt/m/n/7 -M "weka.classifiers.meta.ClassificationViaRegression -W weka.classifiers.functions.LinearRegression -- -S 1" \[] ) [18] [19] [20] Chapter 2. (./launching.tex [21] LaTeX Warning: Citation `wekawiki' on page 22 undefined on input line 85. Overfull \hbox (9.861pt too wide) in paragraph at lines 86--87 []\OT1/cmr/bx/n/10 Weka on Source-forge \OT1/cmr/m/n/10 WEKA's project home-pag e on Source-forge.net. LaTeX Warning: Citation `mainextensions' on page 22 undefined on input line 98. [22] LaTeX Warning: Citation `witten' on page 23 undefined on input line 108. ) [23] [24] Chapter 3. (./simplecli.tex [25] [26] Overfull \hbox (67.06445pt too wide) in paragraph at lines 92--94 \OT1/cmr/m/n/10 with a dot (Unix/Linux: \OT1/cmtt/m/n/10 ./some/other/path/file \OT1/cmr/m/n/10 ; Win-dows: .$\OMS/cmsy/m/n/10 n$\OT1/cmr/m/n/10 Some$\OMS/cmsy /m/n/10 n$\OT1/cmr/m/n/10 Other$\OMS/cmsy/m/n/10 n$\OT1/cmr/m/n/10 Path$\OMS/cm sy/m/n/10 n$\OT1/cmr/m/n/10 file). ) [27] [28] Chapter 4. (./explorer.tex LaTeX Warning: Citation `explorertabs' on page 29 undefined on input line 52. 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[51] [52] [53] Underfull \vbox (badness 10000) has occurred while \output is active [54] [55] [56] Underfull \vbox (badness 7704) has occurred while \output is active [57] [58] [59] Underfull \vbox (badness 10000) has occurred while \output is active [60] Overfull \hbox (74.99634pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Key_Scheme {weka.classifiers.rules.ZeroR,weka.cl assifiers.trees.J48}[] Overfull \hbox (38.24666pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Key_Scheme_version_ID {48055541465867954,-217733 168393644444}[] [61] Overfull \hbox (1.49698pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Summary {'Number of leaves: 3\nSize of the tree: 5\n',[] Overfull \hbox (48.74657pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 iris,1,weka.classifiers.rules.ZeroR,,48055541465867954,2005 1221.033,99,51,[] Overfull \hbox (69.74638pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 17,34,0,33.333333,66.666667,0,0,0.444444,0.471405,100,100,8 0.833088,80.833088,[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 0,1.584963,1.584963,0,0,0,0,1,17,1,34,0,0,0,0,0.333333,1,0. 5,0.5,0,0,?,?,?,?[] [62] [63] Underfull \vbox (badness 10000) has occurred while \output is active [64] Underfull \vbox (badness 10000) has occurred while \output is active [65] [66] [67] Overfull \hbox (38.24666pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 ClassifierSplitEvaluator: weka.classifiers.trees.J48 -C 0.25 -M 2(version[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 Correctly Classified Instances 47 92. 1569 %[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 Incorrectly Classified Instances 4 7. 8431 %[] [68] [69] [70] Overfull \hbox (0.2135pt too wide) in paragraph at lines 584--585 []\OT1/cmr/m/n/10 As with the other Re-sult-Pro-duc-ers, ad-di-tional schemes c an be de-fined. When Underfull \vbox (badness 10000) has occurred while \output is active [71] Underfull \vbox (badness 10000) has occurred while \output is active [72] [73] Underfull \hbox (badness 10000) in paragraph at lines 605--610 Overfull \hbox (34.37631pt too wide) in paragraph at lines 613--614 [] [74] [75] Overfull \hbox (8.24261pt too wide) in paragraph at lines 656--657 [] [76] LaTeX Warning: Citation `hsql' on page 77 undefined on input line 667. LaTeX Warning: Citation `mysql' on page 77 undefined on input line 667. Overfull \hbox (17.30408pt too wide) in paragraph at lines 686--687 []\OT1/cmr/m/n/10 Additional jar archives, i.e., JDBC drivers, are stored in \O T1/cmtt/m/n/10 /home/johndoe/jars\OT1/cmr/m/n/10 . LaTeX Warning: Citation `subversion' on page 77 undefined on input line 690. [77] LaTeX Warning: Citation `subversion' on page 78 undefined on input line 733. 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[81] [82] Underfull \vbox (badness 10000) has occurred while \output is active [83] [84] [85] LaTeX Warning: Citation `bengio' on page 86 undefined on input line 934. LaTeX Warning: Citation `witten' on page 86 undefined on input line 934. Underfull \vbox (badness 10000) has occurred while \output is active [86] ) [87] [88] Chapter 6. (./knowledgeflow.tex [89] [90] [91] [92] LaTeX Warning: Reference `exampleroc' on page 93 undefined on input line 132. Overfull \hbox (36.43697pt too wide) in paragraph at lines 133--135 []\OT1/cmr/m/it/10 ClassifierPerformanceEvaluator \OT1/cmr/m/n/10 - eval-u-ate the per-for-mance of batch trained/tested Overfull \hbox (35.54247pt too wide) in paragraph at lines 137--139 []\OT1/cmr/m/it/10 ClustererPerformanceEvaluator \OT1/cmr/m/n/10 - eval-u-ate t he per-for-mance of batch trained/tested [93] [94] [95] [96] LaTeX Warning: Citation `multipleroc' on page 97 undefined on input line 265. 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(./arffviewer.tex [103] [104] [105] [106] ) [107] [108] Chapter 8. (./bayesnet.tex [109] LaTeX Warning: Reference `eq.infer' on page 110 undefined on input line 93. [110] Underfull \vbox (badness 2103) has occurred while \output is active [111] LaTeX Warning: Reference `sec.estimate' on page 112 undefined on input line 178 . LaTeX Warning: Citation `Moore' on page 112 undefined on input line 181. Overfull \hbox (1.83237pt too wide) in paragraph at lines 180--185 \OT1/cmr/m/n/10 ent from the ADTree clas-si-fier al-go-rithm from \OT1/cmtt/m/n /10 weka.classifiers.tree.ADTree\OT1/cmr/m/n/10 . [112] [113] LaTeX Warning: Citation `bouck1995' on page 114 undefined on input line 252. LaTeX Warning: Citation `CooperHerskovits1992' on page 114 undefined on input l ine 281. LaTeX Warning: Citation `heckerman95' on page 114 undefined on input line 287. LaTeX Warning: Citation `CooperHerskovits1992' on page 114 undefined on input l ine 294. 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If missing, a cross-validation will b e performed on the[] [122] Overfull \hbox (14.09583pt too wide) in paragraph at lines 597--597 [] \OT1/cmtt/m/n/9 Retrieves the options from the XML-data instead of th e command line.[] [123] Overfull \hbox (57.99673pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 Use tournament selection (true) or maximum subpopul atin (false).[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 after a network structure is learned. 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This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 784--784 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 When determining whether an edge exists a search is performed[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 for a set Z that separates the nodes. MaxCardinalit y determines[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 the maximum size of the set Z. This greatly influen ces the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 Use tournament selection (true) or maximum subpopul atin (false).[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] [127] Overfull \hbox (31.74696pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [128] Overfull \hbox (42.24687pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [129] Overfull \hbox (42.24687pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (10.74715pt too wide) in paragraph at lines 961--961 [] \OT1/cmtt/m/n/10 Name of file containing network structure in BIF fo rmat[] [130] [131] Overfull \hbox (641.9914pt too wide) in paragraph at lines 1043--1043 []\OT1/cmtt/m/n/10 Scheme: weka.classifiers.bayes.BayesNet -D -B iris.xml -Q weka.classifiers.bayes.net.search.local.K2 -- -P 2 -S BAYES -E weka.classif iers.bayes.net.estimate.SimpleEstimator -- -A 0.5[] Overfull \hbox (106.49606pt too wide) in paragraph at lines 1061--1061 []\OT1/cmtt/m/n/10 Relation: iris-weka.filters.unsupervised.attribute.Discr etize-B2-M-1.0-Rfirst-last[] LaTeX Warning: Citation `Moore' on page 132 undefined on input line 1062. [132] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1123--1123 []\OT1/cmtt/m/n/10 Correctly Classified Instances 116 77. 3333 %[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1123--1123 []\OT1/cmtt/m/n/10 Incorrectly Classified Instances 34 22. 6667 %[] [133] [134] Underfull \hbox (badness 10000) in paragraph at lines 1181--1191 [135] Overfull \hbox (109.99007pt too wide) in paragraph at lines 1199--1200 [] Underfull \vbox (badness 4569) has occurred while \output is active [136] LaTeX Warning: Citation `cozman' on page 137 undefined on input line 1230. Overfull \hbox (31.52597pt too wide) in paragraph at lines 1232--1244 \OT1/cmr/m/n/10 vari-ables are dis-cretized us-ing the \OT1/cmtt/m/n/10 weka.fi lters.supervised.attribute.Discretize Underfull \vbox (badness 10000) has occurred while \output is active [137] [138] Underfull \hbox (badness 10000) in paragraph at lines 1298--1308 Overfull \hbox (5.15332pt too wide) in paragraph at lines 1316--1319 []\OT1/cmr/m/n/10 The Gen-er-ate Net-work menu al-lows gen-er-a-tion of a com-p lete ran-dom Bayesian [139] [140] LaTeX Warning: Citation `lauritzen' on page 141 undefined on input line 1368. Overfull \hbox (17.96149pt too wide) in paragraph at lines 1375--1376 [] Underfull \vbox (badness 10000) has occurred while \output is active [141] Overfull \hbox (11.45515pt too wide) in paragraph at lines 1409--1410 [] [142] [143] [144] Underfull \vbox (badness 1675) has occurred while \output is active [145] [146] [147] Overfull \hbox (76.10909pt too wide) in paragraph at lines 1570--1576 []\OT1/cmr/m/n/10 Create a class that de-rives from \OT1/cmtt/m/n/10 weka.class ifiers.bayes.net.search.SearchAlgorithm\OT1/cmr/m/n/10 . Overfull \hbox (6.74959pt too wide) in paragraph at lines 1570--1576 \OT1/cmr/m/n/10 validation based, you prob-a-bly want to de-rive from \OT1/cmtt /m/n/10 ScoreSearchAlgorithm\OT1/cmr/m/n/10 , Overfull \hbox (56.55356pt too wide) in paragraph at lines 1570--1576 \OT1/cmtt/m/n/10 CISearchAlgorithm \OT1/cmr/m/n/10 or \OT1/cmtt/m/n/10 CVSearch Algorithm \OT1/cmr/m/n/10 in-stead of de-riv-ing from \OT1/cmtt/m/n/10 SearchAl gorithm Overfull \hbox (29.2748pt too wide) in paragraph at lines 1577--1582 \OT1/cmtt/m/n/10 public void buildStructure(BayesNet bayesNet, Instances instan ces)\OT1/cmr/m/n/10 . Overfull \hbox (6.05424pt too wide) in paragraph at lines 1577--1582 \OT1/cmr/m/n/10 You can ac-cess the par-entsets us-ing \OT1/cmtt/m/n/10 bayesNe t.getParentSet(iAttribute) Overfull \hbox (10.74715pt too wide) in paragraph at lines 1583--1587 \OT1/cmtt/m/n/10 bayesNet.getParentSet(iAttribute).AddParent(iParent, instances ) Overfull \hbox (36.44255pt too wide) in paragraph at lines 1588--1596 []\OT1/cmr/m/n/10 Alternatively, im-ple-ment \OT1/cmtt/m/n/10 public void searc h(BayesNet bayesNet, Instances Overfull \hbox (2.57175pt too wide) in paragraph at lines 1617--1621 \OT1/cmtt/m/n/10 weka.classifiers.bayes.net.estimate.BayesNetEstimator\OT1/cmr/ m/n/10 . Let's say Overfull \hbox (29.2748pt too wide) in paragraph at lines 1622--1627 \OT1/cmtt/m/n/10 public void updateClassifier(BayesNet bayesNet, Instance insta nce)\OT1/cmr/m/n/10 , Overfull \hbox (31.74696pt too wide) in paragraph at lines 1622--1627 \OT1/cmtt/m/n/10 public double[] distributionForInstance(BayesNet bayesNet, Ins tance [148] Overfull \hbox (7.02576pt too wide) in paragraph at lines 1644--1648 \OT1/cmr/m/n/10 Use the class \OT1/cmtt/m/n/10 weka.filters.unsupervised.attrib ute.Discretize \OT1/cmr/m/n/10 to dis-cretize Overfull \hbox (27.74675pt too wide) in paragraph at lines 1644--1648 \OT1/cmtt/m/n/10 java weka.filters.unsupervised.attribute.Discretize -B 3 -i in file.arff Overfull \hbox (1.49698pt too wide) in paragraph at lines 1655--1659 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -B -N 10 -A 9 -C Overfull \hbox (1.49698pt too wide) in paragraph at lines 1661--1665 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -N 15 -A 20 -C 3 Overfull \hbox (22.4968pt too wide) in paragraph at lines 1667--1671 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -F alarm.xml -M 1000 [149] [150] Overfull \hbox (5.66734pt too wide) in paragraph at lines 1731--1735 []\OT1/cmr/m/n/10 Only leave-one-out, k-fold and cu-mu-la-tive cross-validation are im-ple-mented. Overfull \hbox (8.08392pt too wide) in paragraph at lines 1731--1735 \OT1/cmr/m/n/10 These im-ple-men-ta-tions can be made more ef-fi-cient and othe r cross-validation ) [151] [152] [153] [154] Chapter 9. (./arff.tex Overfull \hbox (6.74693pt too wide) in paragraph at lines 41--41 [] \OT1/cmtt/m/n/10 % (b) Donor: Michael Marshall (MARSHALL%PLU@io.arc.na sa.gov)[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 41--41 [] \OT1/cmtt/m/n/10 @ATTRIBUTE class {Iris-setosa,Iris-versicolor,Iris- virginica}[] [155] (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [156] Overfull \hbox (2.27603pt too wide) in paragraph at lines 116--117 \OT1/cmr/m/n/10 pos-si-ble val-ues: $\OML/cmm/m/it/10 <$\OT1/cmtt/m/n/10 nomina l-name1$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , $\OML/cmm/m/it/10 <$\OT1/cmtt/m/n /10 nominal-name2$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , $\OML/cmm/m/it/10 <$\OT 1/cmtt/m/n/10 nominal-name3$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , [157] [158] [159]) [160] Chapter 10. (./xrff.tex [161] Overfull \hbox (80.24629pt too wide) in paragraph at lines 127--127 [] \OT1/cmtt/m/n/10 [] [162] [163] [164]) [165] [166] Chapter 11. (./converters.tex [167] Overfull \hbox (10.74715pt too wide) in paragraph at lines 70--70 [] \OT1/cmtt/m/n/10 java weka.core.converters.CSVSaver -i iris.arff -o iris .csv[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 99--99 [] \OT1/cmtt/m/n/10 java weka.core.converters.DatabaseLoader -Q "select * fro m employee"[] [168] Overfull \hbox (15.9971pt too wide) in paragraph at lines 104--104 [] \OT1/cmtt/m/n/10 java weka.core.converters.DatabaseSaver -i iris.arff -T iris[] ) [169] [170] Chapter 12. (./stemmers.tex Overfull \hbox (68.33246pt too wide) in paragraph at lines 29--30 \OT1/cmr/m/n/10 Weka con-tains a wrap-per class for the Snow-ball (home-page: [ ][][][]) [171] Overfull \hbox (46.33209pt too wide) in paragraph at lines 49--50 []\OT1/cmr/m/n/10 within the String-ToWord-Vec-tor (pack-age \OT1/cmtt/m/n/10 w eka.filters.unsupervised.attribute\OT1/cmr/m/n/10 ) Overfull \hbox (4.85867pt too wide) in paragraph at lines 73--74 \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 GenericObjectEditor.props\OT1/cmr/m/n/10 / \OT1/cmtt/m/n/10 GenericPropertiesCreator.props \OT1/cmr/m/n/10 file ) [172] Chapter 13. (./databases.tex Overfull \hbox (9.77429pt too wide) in paragraph at lines 37--38 []\OT1/cmtt/m/n/10 DatabaseUtils.props.mssqlserver2005 \OT1/cmr/m/n/10 - MS SQL Server 2005 ($\OML/cmm/m/it/10 >\OT1/cmr/m/n/10 =$3.4.11, Overfull \hbox (9.10817pt too wide) in paragraph at lines 39--41 []\OT1/cmtt/m/n/10 DatabaseUtils.props.odbc \OT1/cmr/m/n/10 - ODBC ac-cess via Sun's ODBC/JDBC bridge, Underfull \hbox (badness 10000) in paragraph at lines 46--47 Underfull \hbox (badness 10000) in paragraph at lines 48--49 [173] [174] Overfull \hbox (89.10794pt too wide) in paragraph at lines 103--108 \OT1/cmtt/m/n/10 jdbc:postgresql://server.my.domain:5432/MyDatabase?user=$\OML/ cmm/m/it/10 <$\OT1/cmtt/m/n/10 ...$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 &passwor d=$\OML/cmm/m/it/10 <$\OT1/cmtt/m/n/10 ...$\OML/cmm/m/it/10 >$ Underfull \vbox (badness 3679) has occurred while \output is active [175] [176] Overfull \hbox (27.9972pt too wide) in paragraph at lines 183--185 [][][][] Overfull \hbox (0.8047pt too wide) in paragraph at lines 201--202 \OT1/cmr/m/n/10 com-mand \OT1/cmtt/m/n/10 java weka.core.SystemInfo \OT1/cmr/m/ n/10 and check whether the prop- ) [177] [178] Chapter 14. (./windows_databases.tex [179] [180]) [181] [182] [183] [184] Chapter 15. (./research.tex Overfull \hbox (31.02701pt too wide) in paragraph at lines 32--33 \OT1/cmr/m/n/10 ter-face it is now easy to ex-tract all the pa-per ref-er-ences via \OT1/cmtt/m/n/10 weka.core.ClassDiscovery [185] (./includes/get_wekatechinfo.tex [186] Overfull \hbox (90.0991pt too wide) in paragraph at lines 124--124 []\OT1/cmtt/m/n/7 TECHINFOHANDLERS=`$JAVA weka.core.ClassDiscovery $TECHINFOHAN DLER $PACKAGES | grep "\. weka" | sed s/".*weka"/weka/g`[] )) [187] [188] Chapter 16. (./using_api.tex Underfull \hbox (badness 10000) in paragraph at lines 35--40 [189] LaTeX Warning: Citation `wekawiki' on page 190 undefined on input line 108. LaTeX Warning: Citation `wekaexamples' on page 190 undefined on input line 111. Overfull \hbox (3.8326pt too wide) in paragraph at lines 104--113 \OT1/cmr/m/n/10 support-vector ma-chine clas-si-fier \OT1/cmr/m/it/10 SMO \OT1/ cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 weka.classifiers.functions\OT1/cmr/m/n/10 ) [190] Overfull \hbox (8.05441pt too wide) in paragraph at lines 125--130 \OT1/cmr/m/n/10 method, it is best to have a look at the \OT1/cmtt/m/n/10 setOp tions(String[]) \OT1/cmr/m/n/10 and \OT1/cmtt/m/n/10 getOptions() Overfull \hbox (6.08145pt too wide) in paragraph at lines 140--148 []\OT1/cmr/m/n/10 A \OT1/cmtt/m/n/10 SelectedTag \OT1/cmr/m/n/10 gets con-struc ted us-ing the ar-ray of all pos-si-ble \OT1/cmtt/m/n/10 weka.core.Tag Overfull \hbox (11.99689pt too wide) in paragraph at lines 156--156 [] \OT1/cmtt/m/n/10 setEvaluation(new SelectedTag(EVALUATION_CC, TAGS_EVALU ATION));[] [191] LaTeX Warning: Reference `databases' on page 192 undefined on input line 168. LaTeX Warning: Citation `wekaexamples' on page 192 undefined on input line 174. Overfull \hbox (1.93398pt too wide) in paragraph at lines 178--183 \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 attribute(int) \OT1/cmr/m/n/10 method. Thi s method re-turns \OT1/cmtt/m/n/10 weka.core.Attribute Overfull \hbox (27.33139pt too wide) in paragraph at lines 203--206 []\OT1/cmr/m/n/10 The \OT1/cmtt/m/n/10 DataSource \OT1/cmr/m/n/10 class (in-ner class of the \OT1/cmtt/m/n/10 weka.core.converters.ConverterUtils [192] Underfull \hbox (badness 10000) in paragraph at lines 246--249 Overfull \hbox (3.25064pt too wide) in paragraph at lines 299--301 \OT1/cmr/m/n/10 loaded into mem-ory and then pro-vided row-by-row (``pseudo-inc remental''). [193] [194] LaTeX Warning: Citation `wekaexamples' on page 195 undefined on input line 319. Overfull \hbox (21.69957pt too wide) in paragraph at lines 318--321 \OT1/cmr/m/n/10 The class \OT1/cmtt/m/n/10 wekaexamples.core.CreateInstances \O T1/cmr/m/n/10 of the \OT1/cmr/m/it/10 Weka Ex-am-ples \OT1/cmr/m/n/10 collectio n[[]] Overfull \hbox (41.44293pt too wide) in paragraph at lines 332--335 \OT1/cmr/m/n/10 For all of the dif-fer-ent at-tribute types, WEKA uses the same class, \OT1/cmtt/m/n/10 weka.core.Attribute\OT1/cmr/m/n/10 , Overfull \hbox (0.24724pt too wide) in paragraph at lines 351--351 []\OT1/cmtt/m/n/10 Attribute date = new Attribute("name_of_attr", "yyyy-MM-dd" );[] Overfull \hbox (36.99692pt too wide) in paragraph at lines 372--372 []\OT1/cmtt/m/n/10 Attribute string = new Attribute("name_of_attr", (FastVecto r) null);[] Underfull \vbox (badness 10000) has occurred while \output is active [195] Overfull \vbox (28.493pt too high) has occurred while \output is active [196] Overfull \hbox (21.24706pt too wide) in paragraph at lines 390--390 []\OT1/cmtt/m/n/10 Attribute relational = new Attribute("name_of_attr", rel_st ruct);[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 408--408 [] \OT1/cmtt/m/n/10 Instances dataset = new Instances("Test-dataset", attribu tes, 0);[] Overfull \hbox (9.12917pt too wide) in paragraph at lines 418--421 \OT1/cmr/m/n/10 to it, row by row. There are ba-si-cally two con-struc-tors of the \OT1/cmtt/m/n/10 weka.core.Instance Overfull \hbox (12.8311pt too wide) in paragraph at lines 422--426 []\OT1/cmtt/m/n/10 Instance(double weight, double[] attValues) \OT1/cmr/m/n/10 -- gen-er-ates an \OT1/cmtt/m/n/10 Instance Overfull \vbox (34.59024pt too high) has occurred while \output is active [197] Overfull \hbox (21.24706pt too wide) in paragraph at lines 468--468 []\OT1/cmtt/m/n/10 values[3] = data.attribute(3).addStringValue("This is a str ing");[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 480--480 []\OT1/cmtt/m/n/10 Instances dataRel = new Instances(data.attribute(4).relatio n(),0);[] [198] Overfull \hbox (24.165pt too wide) in paragraph at lines 501--504 \OT1/cmr/m/n/10 Simply gen-er-at-ing an ARFF file is achieved us-ing the static \OT1/cmtt/m/n/10 DataGenerator.makeData Overfull \hbox (28.96251pt too wide) in paragraph at lines 501--504 \OT1/cmr/m/n/10 method. In or-der to write to a file, the gen-er-a-tor needs to have a \OT1/cmtt/m/n/10 java.io.PrintWriter Overfull \hbox (6.74693pt too wide) in paragraph at lines 520--520 [] \OT1/cmtt/m/n/10 new java.io.BufferedWriter(new java.io.FileWriter("rdg1.ar ff")));[] [199] LaTeX Warning: Reference `api_filtering' on page 200 undefined on input line 56 9. Overfull \hbox (20.5538pt too wide) in paragraph at lines 567--570 []\OT1/cmr/m/n/10 Using the \OT1/cmtt/m/n/10 Randomize \OT1/cmr/m/n/10 fil-ter (pack-age \OT1/cmtt/m/n/10 weka.filters.unsupervised.instance\OT1/cmr/m/n/10 ). [200] LaTeX Warning: Citation `wekaexamples' on page 201 undefined on input line 650. [201] Overfull \hbox (22.4968pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 remove.setInputFormat(data); // inform filter abo ut dataset[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 // **AFTER** setting options[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 Instances newData = Filter.useFilter(data, remove); // ap ply filter[] Overfull \hbox (18.08133pt too wide) in paragraph at lines 672--677 \OT1/cmr/m/n/10 A com-mon trap to fall into is set-ting op-tions \OT1/cmr/bx/n/ 10 af-ter \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 setInputFormat(Instances) Overfull \hbox (5.97029pt too wide) in paragraph at lines 689--693 \OT1/cmr/m/n/10 with the \OT1/cmtt/m/n/10 Standardize \OT1/cmr/m/n/10 fil-ter ( pack-age \OT1/cmtt/m/n/10 weka.filters.unsupervised.attribute\OT1/cmr/m/n/10 ): [202] Overfull \hbox (17.5531pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 like \OT1/cmtt/m/n/10 FilteredClassifier \OT1/cmr/m/n/10 (pack- age \OT1/cmtt/m/n/10 weka.classifiers.meta\OT1/cmr/m/n/10 ), \OT1/cmtt/m/n/10 F ilteredClusterer Overfull \hbox (12.72011pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 weka.clusterers\OT1/cmr/m/n/10 ), \O T1/cmtt/m/n/10 FilteredAssociator \OT1/cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 we ka.associations\OT1/cmr/m/n/10 ) Overfull \hbox (27.16393pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 and \OT1/cmtt/m/n/10 FilteredAttributeEval\OT1/cmr/m/n/10 /\OT1 /cmtt/m/n/10 FilteredSubsetEval \OT1/cmr/m/n/10 (in \OT1/cmtt/m/n/10 weka.attri buteSelection\OT1/cmr/m/n/10 ). LaTeX Warning: Reference `api_classification' on page 203 undefined on input li ne 729. [203] LaTeX Warning: Citation `wekaexamples' on page 204 undefined on input line 780. LaTeX Warning: Reference `api_loading_data' on page 204 undefined on input line 823. Overfull \hbox (20.1095pt too wide) in paragraph at lines 817--824 \OT1/cmr/m/n/10 All in-cre-men-tal clas-si-fiers in WEKA im-ple-ment the in-ter -face \OT1/cmtt/m/n/10 UpdateableClassifier Overfull \hbox (5.91695pt too wide) in paragraph at lines 831--833 []\OT1/cmr/m/it/10 update \OT1/cmr/m/n/10 the model row-by-row, by call-ing the \OT1/cmtt/m/n/10 updateClassifier(Instance) [204] [205] Overfull \hbox (21.05566pt too wide) in paragraph at lines 872--874 \OT1/cmr/m/n/10 The eval-u-a-tion step, in-clud-ing col-lec-tion of statis-tics , is per-formed by the \OT1/cmtt/m/n/10 Evaluation LaTeX Warning: Reference `api_randomizing_data' on page 206 undefined on input line 890. [206] Overfull \hbox (11.99689pt too wide) in paragraph at lines 910--910 [] \OT1/cmtt/m/n/10 System.out.println(eval.toSummaryString("\nResults\n\n", false));[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 940--940 [] \OT1/cmtt/m/n/10 System.out.println(eval.toSummaryString("\nResults\n\n", false));[] [207] Overfull \hbox (11.55396pt too wide) in paragraph at lines 950--952 []\OT1/cmtt/m/n/10 toClassDetailsString \OT1/cmr/m/n/10 -- out-puts TP/FP rates , pre-ci-sion, re-call, F-measure, Overfull \hbox (0.47084pt too wide) in paragraph at lines 952--954 []\OT1/cmtt/m/n/10 toCumulativeMarginDistributionString \OT1/cmr/m/n/10 -- out- puts the cu-mu-la-tive mar- [208] LaTeX Warning: Reference `api_filtering_onthefly' on page 209 undefined on inpu t line 996. Overfull \hbox (27.74675pt too wide) in paragraph at lines 1017--1017 [] \OT1/cmtt/m/n/10 Instances unlabeled = DataSource.read("/some/where/unlabe led.arff");[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 1017--1017 [] \OT1/cmtt/m/n/10 double clsLabel = tree.classifyInstance(unlabeled.insta nce(i));[] Overfull \hbox (6.74693pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 double[] dist = cls.distributionForInstance(test.instan ce(i));[] Overfull \hbox (53.99652pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 System.out.print(test.instance(i).toString(test.classIn dex()) + " - ");[] Overfull \hbox (27.74675pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 System.out.print(test.classAttribute().value((int) pred ) + " - ");[] [209] LaTeX Warning: Citation `wekaexamples' on page 210 undefined on input line 1069 . Overfull \hbox (12.30984pt too wide) in paragraph at lines 1083--1087 []\OT1/cmr/m/it/10 build the model \OT1/cmr/m/n/10 with train-ing data -- call- ing the \OT1/cmtt/m/n/10 buildClusterer(Instances) Overfull \hbox (0.94284pt too wide) in paragraph at lines 1104--1108 \OT1/cmr/m/n/10 Incremental clus-ter-ers in WEKA im-ple-ment the in-ter-face \O T1/cmtt/m/n/10 UpdateableClusterer Overfull \hbox (13.7781pt too wide) in paragraph at lines 1112--1114 []\OT1/cmr/m/it/10 update \OT1/cmr/m/n/10 the model row-by-row by call-ing the the \OT1/cmtt/m/n/10 updateClusterer(Instance) Underfull \vbox (badness 10000) has occurred while \output is active [210] Overfull \vbox (79.67348pt too high) has occurred while \output is active [211] [212] Overfull \hbox (59.24648pt too wide) in paragraph at lines 1160--1160 [] \OT1/cmtt/m/n/10 System.out.println(ClusterEvaluation.evaluateClusterer(new EM(), options));[] Overfull \hbox (53.99652pt too wide) in paragraph at lines 1195--1195 [] \OT1/cmtt/m/n/10 DensityBasedClusterer clusterer = new ... // the clust erer to evaluate[] Overfull \hbox (64.49643pt too wide) in paragraph at lines 1195--1195 [] \OT1/cmtt/m/n/10 new Random(1)); // and rando m number generator[] [213] Overfull \hbox (0.24724pt too wide) in paragraph at lines 1222--1222 [] \OT1/cmtt/m/n/10 filter.setAttributeIndices("" + (data.classIndex() + 1) );[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 1222--1222 [] \OT1/cmtt/m/n/10 Instances dataClusterer = Filter.useFilter(data, filter );[] [214] Overfull \hbox (3.69315pt too wide) in paragraph at lines 1247--1249 []\OT1/cmtt/m/n/10 clusterInstance(Instance) \OT1/cmr/m/n/10 -- de-ter-mines th e clus-ter the \OT1/cmtt/m/n/10 Instance \OT1/cmr/m/n/10 would Overfull \hbox (6.74693pt too wide) in paragraph at lines 1276--1276 [] \OT1/cmtt/m/n/10 int cluster = clusterer.clusterInstance(dataset2.instan ce(i));[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 1276--1276 [] \OT1/cmtt/m/n/10 double[] dist = clusterer.distributionForInstance(datas et2.instance(i));[] [215] Underfull \hbox (badness 10000) in paragraph at lines 1285--1290 Overfull \hbox (3.35565pt too wide) in paragraph at lines 1293--1298 []\OT1/cmr/m/it/10 single at-tribute eval-u-a-tors \OT1/cmr/m/n/10 -- per-form eval-u-a-tions on sin-gle at-tributes. These LaTeX Warning: Citation `wekaexamples' on page 216 undefined on input line 1339 . [216] Overfull \hbox (64.49643pt too wide) in paragraph at lines 1378--1378 [] \OT1/cmtt/m/n/10 AttributeSelectedClassifier classifier = new AttributeSel ectedClassifier();[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 1378--1378 [] \OT1/cmtt/m/n/10 evaluation.crossValidateModel(classifier, data, 10, new R andom(1));[] [217] Overfull \hbox (27.4348pt too wide) in paragraph at lines 1383--1388 \OT1/cmr/m/n/10 train-ing a clas-si-fier, then the fil-ter ap-proach is the rig ht one. The \OT1/cmtt/m/n/10 AttributeSelection [218] [219] LaTeX Warning: Reference `api_loading_data' on page 220 undefined on input line 1459. LaTeX Warning: Citation `wekaexamples' on page 220 undefined on input line 1462 . Overfull \hbox (50.86061pt too wide) in paragraph at lines 1465--1470 \OT1/cmr/m/n/10 ing the data or use an ex-plicit con-verter (all savers are lo- cated in the \OT1/cmtt/m/n/10 weka.core.converters Overfull \hbox (22.94261pt too wide) in paragraph at lines 1471--1474 []\OT1/cmr/m/n/10 Use the \OT1/cmtt/m/n/10 DataSink \OT1/cmr/m/n/10 class (in-n er class of \OT1/cmtt/m/n/10 weka.core.converters.ConverterUtils\OT1/cmr/m/n/10 ), [220] [221] LaTeX Warning: Citation `wekaexamples' on page 222 undefined on input line 1562 . Overfull \hbox (34.02615pt too wide) in paragraph at lines 1575--1578 \OT1/cmr/m/n/10 tions, us-ing the \OT1/cmtt/m/n/10 ThresholdCurve \OT1/cmr/m/n/ 10 class (pack-age \OT1/cmtt/m/n/10 weka.classifiers.evaluation\OT1/cmr/m/n/10 ). Overfull \hbox (30.6928pt too wide) in paragraph at lines 1580--1583 \OT1/cmr/m/n/10 in-stance of the \OT1/cmtt/m/n/10 ThresholdVisualizePanel \OT1/ cmr/m/n/10 class (pack-age \OT1/cmtt/m/n/10 weka.gui.visualize\OT1/cmr/m/n/10 ) . Overfull \hbox (5.4972pt too wide) in paragraph at lines 1594--1594 []\OT1/cmtt/m/n/10 Instances curve = tc.getCurve(eval.predictions(), classInde x);[] Overfull \hbox (15.9971pt too wide) in paragraph at lines 1610--1610 [] \OT1/cmtt/m/n/10 Utils.doubleToString(ThresholdCurve.getROCArea(curve),4)+ ")");[] [222] LaTeX Warning: Citation `dotformat' on page 223 undefined on input line 1641. Overfull \hbox (1.49698pt too wide) in paragraph at lines 1665--1665 [] \OT1/cmtt/m/n/10 JFrame jf = new JFrame("Weka Classifier Tree Visualizer: J48");[] [223] LaTeX Warning: Citation `dotformat' on page 224 undefined on input line 1673. LaTeX Warning: Citation `cozman' on page 224 undefined on input line 1674. [224] [225] Overfull \hbox (17.24684pt too wide) in paragraph at lines 1778--1778 [] \OT1/cmtt/m/n/10 Object o[] = SerializationHelper.readAll("/some/where/j48 .model");[] ) [226] Chapter 17. (./extending.tex LaTeX Warning: Reference `genericobjecteditor' on page 227 undefined on input l ine 35. [227] (./extending_classifier.tex Underfull \vbox (badness 10000) has occurred while \output is active [228] Overfull \vbox (64.17354pt too high) has occurred while \output is active [229] [230] [231] Overfull \hbox (6.74693pt too wide) in paragraph at lines 192--192 [] \OT1/cmtt/m/n/10 result.addAll(Arrays.asList(super.getOptions())); // sup erclass[] LaTeX Warning: Reference `classifier_capabilities' on page 232 undefined on inp ut line 200. Overfull \hbox (30.47186pt too wide) in paragraph at lines 227--231 \OT1/cmr/m/n/10 re-turns the class prob-a-bil-i-ties ar-ray of the pre-dic-tion for the given \OT1/cmtt/m/n/10 weka.core.Instance [232] Overfull \hbox (42.88777pt too wide) in paragraph at lines 232--243 \OT1/cmr/m/n/10 bel in-dex based on the prob-a-bil-i-ties ar-ray that the \OT1/ cmtt/m/n/10 distributionForInstance(Instance) [233] [234] [235] Underfull \hbox (badness 10000) in paragraph at lines 360--374 Overfull \hbox (0.55939pt too wide) in paragraph at lines 390--397 []\OT1/cmr/m/it/10 multi-instance clas-si-fiers \OT1/cmr/m/n/10 -- in or-der to sig-nal that the spe-cial multi-instance Overfull \hbox (5.27605pt too wide) in paragraph at lines 390--397 \OT1/cmr/m/n/10 instance, \OT1/cmtt/m/n/10 weka.core.MultiInstanceCapabilitiesH andler\OT1/cmr/m/n/10 , which re-turns [236] Overfull \hbox (5.08153pt too wide) in paragraph at lines 441--446 \OT1/cmr/m/n/10 in case of de-scen-dants of the \OT1/cmtt/m/n/10 weka.classifie r.MultipleClassifiersCombiner\OT1/cmr/m/n/10 , Overfull \hbox (14.09583pt too wide) in paragraph at lines 461--461 [] \OT1/cmtt/m/n/9 result.enable(Capability.NOMINAL_CLASS); // only nominal classes allowed[] [237] Overfull \vbox (104.0pt too high) has occurred while \output is active [238] [239] Overfull \hbox (17.24684pt too wide) in paragraph at lines 603--603 [] \OT1/cmtt/m/n/10 weka.core.CheckOptionHandler -W classname [-- additional pa rameters][] Overfull \hbox (59.46141pt too wide) in paragraph at lines 640--645 \OT1/cmr/m/n/10 class. The su-per-class for clas-si-fier unit tests is \OT1/cmt t/m/n/10 weka.classifiers.AbstractClassifierTest\OT1/cmr/m/n/10 . ) [240] (./extending_filter.tex LaTeX Warning: Reference `filter_capabilities' on page 241 undefined on input l ine 63. LaTeX Warning: Reference `filter_optionhandling' on page 241 undefined on input line 66. Overfull \hbox (26.02608pt too wide) in paragraph at lines 63--67 \OT1/cmtt/m/n/10 weka.filters.Filter \OT1/cmr/m/n/10 su-per-class does not im-p le-ment the \OT1/cmtt/m/n/10 weka.core.OptionHandler [241] [242] Overfull \hbox (34.38815pt too wide) in paragraph at lines 125--132 \OT1/cmr/m/n/10 de-ter-mine what the out-put for-mat will be (and set if via \O T1/cmtt/m/n/10 setOutputFormat(Instances)\OT1/cmr/m/n/10 ) [243] (./includes/BatchFilter.tex) [244] (./includes/BatchFilter2.tex) [245] (./includes/BatchFilter3.tex) Overfull \vbox (68.45831pt too high) has occurred while \output is active [246] (./includes/StreamFilter.tex) [247] LaTeX Warning: Reference `filter_revisions' on page 248 undefined on input line 236. LaTeX Warning: Reference `classifier_methods' on page 248 undefined on input li ne 247. LaTeX Warning: Reference `classifier_parameters' on page 248 undefined on input line 248. [248] (./includes/SimpleBatch.tex Overfull \hbox (33.25543pt too wide) in paragraph at lines 45--45 [] \OT1/cmtt/m/n/8 return "A simple batch filter that adds an additional a ttribute 'blah' at the end "[] Overfull \hbox (7.75507pt too wide) in paragraph at lines 45--45 [] \OT1/cmtt/m/n/8 result.enable(Capability.NO_CLASS); //// filter doesn't need class to be set//[] ) [249] LaTeX Warning: Reference `filter_revisions' on page 250 undefined on input line 267. LaTeX Warning: Reference `classifier_methods' on page 250 undefined on input li ne 278. [250] (./includes/SimpleStream.tex Overfull \hbox (7.75507pt too wide) in paragraph at lines 50--50 [] \OT1/cmtt/m/n/8 result.enable(Capability.NO_CLASS); //// filter doesn't need class to be set//[] ) [251] LaTeX Warning: Reference `classifier_capabilities' on page 252 undefined on inp ut line 314. Overfull \hbox (15.32312pt too wide) in paragraph at lines 319--322 \OT1/cmr/m/n/10 bu-tions into ac-count. Must im-ple-ment the \OT1/cmtt/m/n/10 w eka.filters.SupervisedFilter LaTeX Warning: Reference `classifier_javadoc' on page 252 undefined on input li ne 337. Overfull \hbox (0.93573pt too wide) in paragraph at lines 336--338 \OT1/cmr/m/n/10 The Javadoc gen-er-a-tion works the same as with clas-si-fiers. See sec-tion ``Javadoc'' LaTeX Warning: Reference `classifier_revisions' on page 252 undefined on input line 348. [252] Overfull \hbox (17.24684pt too wide) in paragraph at lines 360--360 [] \OT1/cmtt/m/n/10 weka.core.CheckOptionHandler -W classname [-- additional pa rameters][] Overfull \hbox (77.71982pt too wide) in paragraph at lines 386--390 []\OT1/cmr/m/n/10 Here is an ex-am-ple call for \OT1/cmtt/m/n/10 weka.filters.u nsupervised.attribute.ReplaceMissingValues ) [253] (./extending_other_algorithms.tex Overfull \hbox (1.7496pt too wide) in paragraph at lines 36--39 \OT1/cmr/m/n/10 like the \OT1/cmtt/m/n/10 FilteredClusterer \OT1/cmr/m/n/10 tha t fil-ters the data on-the-fly for the base-clusterer. Underfull \hbox (badness 10000) in paragraph at lines 36--39 Overfull \hbox (56.46068pt too wide) in paragraph at lines 50--55 \OT1/cmr/m/n/10 one way or an-other. \OT1/cmtt/m/n/10 RandomizableClusterer\OT1 /cmr/m/n/10 , \OT1/cmtt/m/n/10 RandomizableDensityBasedClusterer [254] LaTeX Warning: Reference `classifier_capabilities' on page 255 undefined on inp ut line 87. Overfull \hbox (3.24855pt too wide) in paragraph at lines 116--118 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.c lusterers.AbstractClustererTest [255] Overfull \hbox (0.3597pt too wide) in paragraph at lines 137--140 \OT1/cmr/m/n/10 The an-ces-tor for all eval-u-a-tors is the \OT1/cmtt/m/n/10 we ka.attributeSelection.ASEvaluation Underfull \hbox (badness 10000) in paragraph at lines 137--140 [256] Overfull \hbox (10.55435pt too wide) in paragraph at lines 189--192 \OT1/cmr/m/n/10 The an-ces-tor for all search al-go-rithms is the \OT1/cmtt/m/n /10 weka.attributeSelection.ASSearch Underfull \hbox (badness 10000) in paragraph at lines 189--192 Overfull \hbox (45.24818pt too wide) in paragraph at lines 216--220 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.a ttributeSelection.AbstractEvaluatorTest [257] Overfull \hbox (5.08264pt too wide) in paragraph at lines 228--235 \OT1/cmr/m/n/10 can also im-ple-ment a meta-associator, de-rived from \OT1/cmtt /m/n/10 SingleAssociatorEnhancer\OT1/cmr/m/n/10 . Overfull \hbox (1.49698pt too wide) in paragraph at lines 258--258 [] \OT1/cmtt/m/n/10 public void buildAssociations(Instances data) throws Excep tion {[] LaTeX Warning: Reference `classifier_capabilities' on page 258 undefined on inp ut line 261. [258] Overfull \hbox (1.49698pt too wide) in paragraph at lines 283--283 [] \OT1/cmtt/m/n/10 AbstractAssociator.runAssociator(new FunkyAssociator(), args);[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 290--290 [] \OT1/cmtt/m/n/10 weka.associations.CheckAssociator -W classname [further op tions][] ) Overfull \hbox (18.99841pt too wide) in paragraph at lines 291--62 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.a ssociations.AbstractAssociatorTest [259] (./extending_explorer.tex Overfull \hbox (11.74733pt too wide) in paragraph at lines 41--44 []\OT1/cmtt/m/n/10 weka.gui.explorer.Explorer.CapabilitiesFilterChangeListener Overfull \hbox (18.02759pt too wide) in paragraph at lines 45--47 []\OT1/cmr/m/n/10 adding the class-name of your class to the Tabs prop-erty in the \OT1/cmtt/m/n/10 Explorer.props LaTeX Warning: Citation `wekaexamples' on page 260 undefined on input line 52. Overfull \hbox (68.49664pt too wide) in paragraph at lines 85--85 [] \OT1/cmtt/m/n/10 /** sends notifications when the set of working instances gets changed*/[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 85--85 [] \OT1/cmtt/m/n/10 protected PropertyChangeSupport m_Support = new PropertyC hangeSupport(this);[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 return "SQL"; // what's displayed as tab-title, e.g., Classify[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 return "Retrieving data from databases"; // the toolti p of the tab[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 /** ignored, since we "generate" data and not receive it */[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 /** PropertyChangeListener which will be notified of valu e changes. */[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 public void addPropertyChangeListener(PropertyChangeListe ner l) {[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 public void removePropertyChangeListener(PropertyChangeLi stener l) {[] [260] Overfull \vbox (91.59024pt too high) has occurred while \output is active [261] Overfull \hbox (31.74696pt too wide) in paragraph at lines 138--138 [] \OT1/cmtt/m/n/10 /** the Load button - makes the data available in the Exp lorer */[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 Instances data = query.retrieveInstances(m_Viewer.g etQuery());[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 // set data in preprocess panel (also notifies of c apabilties changes)[] Overfull \hbox (5.4972pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 getExplorer().getPreprocessPanel().setInstances(dat a);[] Overfull \vbox (69.0pt too high) has occurred while \output is active [262] [263] Overfull \hbox (68.49664pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 /** sends notifications when the set of working instances gets changed*/[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 protected PropertyChangeSupport m_Support = new PropertyC hangeSupport(this);[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 return "DataGeneration"; // what's displayed as tab-ti tle, e.g., Classify[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 return "Generating artificial datasets"; // the toolti p of the tab[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 /** ignored, since we "generate" data and not receive it */[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 /** PropertyChangeListener which will be notified of valu e changes. */[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 public void addPropertyChangeListener(PropertyChangeListe ner l) {[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 public void removePropertyChangeListener(PropertyChangeLi stener l) {[] Overfull \vbox (92.50687pt too high) has occurred while \output is active [264] Overfull \hbox (89.49646pt too wide) in paragraph at lines 269--269 [] \OT1/cmtt/m/n/10 protected GenericObjectEditor m_GeneratorEditor = new Gen ericObjectEditor();[] Overfull \hbox (10.74715pt too wide) in paragraph at lines 269--269 [] \OT1/cmtt/m/n/10 protected JButton m_ButtonGenerate = new JButton("Generat e");[] Overfull \hbox (84.2465pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 DataGenerator generator = (DataGenerator) m_Generator Editor.getValue();[] Overfull \hbox (78.99655pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 String cname = generator.getClass().getName().replace All(".*\\.", "");[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 cmd += " "+Utils.joinOptions(((OptionHandler)genera tor).getOptions());[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 DataGenerator.makeData(generator, generator.getOpti ons());[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 getExplorer(), "Error generating data:\n" + ex.ge tMessage(),[] Overfull \vbox (48.0pt too high) has occurred while \output is active [265] Overfull \hbox (84.2465pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 Instances data = new Instances(new StringReader(m_O utput.getText()));[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 // set data in preprocess panel (also notifies of c apabilties changes)[] Overfull \hbox (5.4972pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 getExplorer().getPreprocessPanel().setInstances(dat a);[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 getExplorer(), "Error generating data:\n" + ex.ge tMessage(),[] Overfull \vbox (81.85202pt too high) has occurred while \output is active [266] LaTeX Warning: Citation `wekawiki' on page 267 undefined on input line 375. Overfull \vbox (57.81944pt too high) has occurred while \output is active [267] LaTeX Warning: Citation `wekaexamples' on page 268 undefined on input line 402. Overfull \hbox (34.60944pt too wide) in paragraph at lines 418--422 \OT1/cmr/m/n/10 home di-rec-tory) un-der the key \OT1/cmtt/m/n/10 weka.gui.visu alize.plugins.VisualizePlugin\OT1/cmr/m/n/10 . [268] [269] LaTeX Warning: Citation `jmathplot' on page 270 undefined on input line 453. )) [270] Chapter 18. (./technical_documentation.tex Underfull \hbox (badness 10000) in paragraph at lines 21--22 [271] Underfull \hbox (badness 10000) in paragraph at lines 81--82 Underfull \hbox (badness 10000) in paragraph at lines 83--84 Underfull \hbox (badness 10000) in paragraph at lines 85--93 Underfull \hbox (badness 10000) in paragraph at lines 94--95 Underfull \hbox (badness 10000) in paragraph at lines 96--97 Underfull \hbox (badness 10000) in paragraph at lines 98--99 Underfull \hbox (badness 10000) in paragraph at lines 104--105 Underfull \hbox (badness 10000) in paragraph at lines 106--107 Overfull \hbox (95.24629pt too wide) in paragraph at lines 114--115 [][][]\OT1/cmtt/m/n/10 export CLASSPATH=$CLASSPATH:/home/johndoe/jars/mysql-con nector-java-5.1.7-bin.jar Overfull \hbox (95.24629pt too wide) in paragraph at lines 120--121 [][][]\OT1/cmtt/m/n/10 setenv CLASSPATH $CLASSPATH:/home/johndoe/jars/mysql-con nector-java-5.1.7-bin.jar [272] Underfull \hbox (badness 10000) in paragraph at lines 141--143 Underfull \hbox (badness 10000) in paragraph at lines 146--147 Underfull \hbox (badness 10000) in paragraph at lines 148--149 Underfull \hbox (badness 10000) in paragraph at lines 150--151 Underfull \hbox (badness 10000) in paragraph at lines 152--154 Underfull \hbox (badness 10000) in paragraph at lines 163--165 Underfull \hbox (badness 10000) in paragraph at lines 170--176 [273] Overfull \hbox (7.98488pt too wide) in paragraph at lines 177--178 \OT1/cmr/m/n/10 Here's once again how you start the Weka Main-GUI \OT1/cmr/bx/n /10 with \OT1/cmr/m/n/10 your cur-rent [][]\OT1/cmtt/m/n/10 CLASSPATH Overfull \hbox (0.24724pt too wide) in paragraph at lines 181--182 [][]\OT1/cmtt/m/n/10 java -Xmx128m -classpath "%CLASSPATH%;weka.jar" weka.gui.M ain Underfull \hbox (badness 10000) in paragraph at lines 187--188 Underfull \hbox (badness 10000) in paragraph at lines 189--190 Underfull \hbox (badness 10000) in paragraph at lines 210--211 Underfull \hbox (badness 10000) in paragraph at lines 212--213 Underfull \hbox (badness 10000) in paragraph at lines 214--215 Overfull \hbox (37.9968pt too wide) in paragraph at lines 216--217 [][][][][] Underfull \hbox (badness 10000) in paragraph at lines 216--217 Underfull \hbox (badness 10000) in paragraph at lines 219--220 [274] Underfull \hbox (badness 10000) in paragraph at lines 223--224 Overfull \hbox (43.24675pt too wide) in paragraph at lines 225--226 [][][][][] Underfull \hbox (badness 10000) in paragraph at lines 245--246 [275] Overfull \hbox (14.55481pt too wide) in paragraph at lines 265--274 \OT1/cmr/m/n/10 run-time (rather than us-ing only those spec-i-fied in the [][] \OT1/cmtt/m/n/10 GenericObjectEditor.props Underfull \hbox (badness 10000) in paragraph at lines 300--306 [276] Overfull \vbox (24.59024pt too high) has occurred while \output is active [277] Underfull \hbox (badness 10000) in paragraph at lines 375--380 Underfull \hbox (badness 10000) in paragraph at lines 381--382 Underfull \hbox (badness 10000) in paragraph at lines 383--384 Underfull \hbox (badness 10000) in paragraph at lines 385--386 Overfull \hbox (3.66528pt too wide) in paragraph at lines 387--390 \OT1/cmr/m/n/10 Where the [][]\OT1/cmtt/m/n/10 []\OT1/cmr/m/n/10 cor-re-s ponds to a key in the [][]\OT1/cmtt/m/n/10 GenericPropertiesCreator.props Overfull \hbox (64.49643pt too wide) in paragraph at lines 412--412 []\OT1/cmtt/m/n/10 # exclude all ResultListeners that also implement the Result Producer interface[] [278] Underfull \hbox (badness 10000) in paragraph at lines 416--427 Overfull \hbox (53.24666pt too wide) in paragraph at lines 428--429 [][][]\OT1/cmtt/m/n/10 java -classpath "/development:/distribution/weka.jar" we ka.gui.GUIChooser Underfull \hbox (badness 10000) in paragraph at lines 428--429 [279] Underfull \hbox (badness 10000) in paragraph at lines 456--457 [280] [281] Underfull \hbox (badness 10000) in paragraph at lines 493--494 Underfull \hbox (badness 10000) in paragraph at lines 495--496 Underfull \hbox (badness 10000) in paragraph at lines 497--498 Underfull \hbox (badness 10000) in paragraph at lines 520--524 [282] Overfull \hbox (17.24684pt too wide) in paragraph at lines 567--567 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 574--577 Underfull \hbox (badness 10000) in paragraph at lines 577--585 [283] Underfull \hbox (badness 10000) in paragraph at lines 586--592 Overfull \hbox (21.24706pt too wide) in paragraph at lines 600--600 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 606--611 Overfull \hbox (26.49701pt too wide) in paragraph at lines 615--615 [] \OT1/cmtt/m/n/10 [] [284] Overfull \hbox (4.64594pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (4.64594pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (32.9956pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (37.72055pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (9.37088pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Underfull \hbox (badness 10000) in paragraph at lines 663--668 [285] Underfull \hbox (badness 10000) in paragraph at lines 722--723 Underfull \hbox (badness 10000) in paragraph at lines 724--725 [286] Overfull \hbox (43.80186pt too wide) in paragraph at lines 749--750 []\OT1/cmr/m/n/10 The DTD for KOML can be found at [][][][] Underfull \hbox (badness 10000) in paragraph at lines 749--750 Underfull \hbox (badness 10000) in paragraph at lines 751--752 Underfull \hbox (badness 10000) in paragraph at lines 753--754 Overfull \hbox (75.44197pt too wide) in paragraph at lines 756--759 \OT1/cmr/m/n/10 put file (see op-tions of [][]\OT1/cmtt/m/n/10 weka.experiment. Experiment []\OT1/cmr/m/n/10 and [][]\OT1/cmtt/m/n/10 weka.experiment.RemoteExp eriment LaTeX Warning: Reference `xml_command_line' on page 287 undefined on input line 787. Underfull \hbox (badness 10000) in paragraph at lines 783--790 Overfull \hbox (3.01225pt too wide) in paragraph at lines 799--805 \OT1/cmr/m/n/10 The GraphVi-su-al-izer ([][]\OT1/cmtt/m/n/10 weka.gui.graphvisu alizer.GraphVisualizer[]\OT1/cmr/m/n/10 ) can save [287] Overfull \hbox (17.24684pt too wide) in paragraph at lines 825--825 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (11.99689pt too wide) in paragraph at lines 825--825 [] \OT1/cmtt/m/n/10 [] LaTeX Warning: Reference `xrff' on page 288 undefined on input line 838. ) [288] Chapter 19. (./other_resources.tex Underfull \hbox (badness 10000) in paragraph at lines 51--56 Underfull \hbox (badness 10000) in paragraph at lines 57--58 [289] Underfull \hbox (badness 10000) in paragraph at lines 65--68 LaTeX Warning: Reference `RunWeka.ini' on page 290 undefined on input line 76. Underfull \hbox (badness 10000) in paragraph at lines 91--93 Underfull \hbox (badness 10000) in paragraph at lines 94--95 Underfull \hbox (badness 10000) in paragraph at lines 106--108 Underfull \vbox (badness 1371) has occurred while \output is active [290] Overfull \hbox (5.99707pt too wide) in paragraph at lines 109--110 [][][]\OT1/cmtt/m/n/10 java weka.core.converters.CSVLoader filename.csv > filen ame.arff Underfull \hbox (badness 10000) in paragraph at lines 109--110 Underfull \hbox (badness 10000) in paragraph at lines 112--114 Underfull \hbox (badness 10000) in paragraph at lines 115--116 Underfull \hbox (badness 10000) in paragraph at lines 123--126 Underfull \hbox (badness 10000) in paragraph at lines 127--128 Overfull \hbox (16.19777pt too wide) in paragraph at lines 132--138 \OT1/cmr/m/n/10 Get-ting [][]\OT1/cmtt/m/n/10 java.lang.NoClassDefFoundError [] \OT1/cmr/m/n/10 ex-cep-tions? Most likely your \OT1/cmr/bx/n/10 CLASS- Underfull \hbox (badness 10000) in paragraph at lines 132--138 Underfull \hbox (badness 10000) in paragraph at lines 139--140 Underfull \hbox (badness 10000) in paragraph at lines 141--142 Underfull \hbox (badness 10000) in paragraph at lines 143--144 [291] Underfull \hbox (badness 10000) in paragraph at lines 145--148 Underfull \hbox (badness 10000) in paragraph at lines 149--150 LaTeX Warning: Reference `CLASSPATH' on page 292 undefined on input line 151. Underfull \hbox (badness 10000) in paragraph at lines 159--162 [292] Overfull \hbox (69.74638pt too wide) in paragraph at lines 236--236 []\OT1/cmtt/m/n/10 /usr/share/themes/Mist/gtk-2.0/gtkrc:48: Engine "mist" is un supported, ignoring[] Overfull \hbox (153.74565pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at weka.gui.explorer.PreprocessPanel.addPropertyChang eListener(PreprocessPanel.java:519)[] Overfull \hbox (95.99615pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at javax.swing.plaf.synth.SynthPanelUI.installListene rs(SynthPanelUI.java:49)[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at javax.swing.plaf.synth.SynthPanelUI.installUI(Synt hPanelUI.java:38)[] Underfull \hbox (badness 10000) in paragraph at lines 245--247 Underfull \hbox (badness 10000) in paragraph at lines 248--249 Underfull \hbox (badness 10000) in paragraph at lines 250--251 Underfull \hbox (badness 10000) in paragraph at lines 252--253 Underfull \hbox (badness 10000) in paragraph at lines 255--256 [293] Underfull \hbox (badness 10000) in paragraph at lines 257--258 LaTeX Warning: Reference `GUIChooserButNotExplorer' on page 294 undefined on in put line 260. Overfull \hbox (9.16362pt too wide) in paragraph at lines 264--265 []\OT1/cmr/m/n/10 Java VM op-tions ([][][][]) ) (./bibliography.tex [294] Underfull \hbox (badness 3514) in paragraph at lines 31--35 []\OT1/cmr/m/it/10 Weka Ex-am-ples \OT1/cmr/m/n/10 -- A col-lec-tion of ex-am-p le classes, as part of Underfull \hbox (badness 5119) in paragraph at lines 31--35 \OT1/cmr/m/n/10 an ANT project, in-cluded in the WEKA snap-shots (avail-able Underfull \hbox (badness 10000) in paragraph at lines 31--35 \OT1/cmr/m/n/10 for down-load on the home-page) or di-rectly from sub-ver-sion Overfull \hbox (64.80228pt too wide) in paragraph at lines 31--35 [][][][] Underfull \vbox (badness 10000) has occurred while \output is active [295] Overfull \vbox (45.33775pt too high) has occurred while \output is active [296] Overfull \hbox (22.2144pt too wide) in paragraph at lines 103--106 []\OT1/cmr/m/n/9 Cozman. See [][][][] ) [297] (./manual.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. Package rerunfilecheck Warning: File `manual.out' has changed. (rerunfilecheck) Rerun to get outlines right (rerunfilecheck) or use package `bookmark'. ) (see the transcript file for additional information) Output written on manual.dvi (297 pages, 793488 bytes). Transcript written on manual.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=latex) restricted \write18 enabled. entering extended mode (./manual.tex LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-01-09> xparse <2020-03-03> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/epsfig.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/dvips.def)))) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hdvips.def (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pdfmark.def (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty)))) (./hyphenation.tex) (./extensions.tex) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-dvips.def) (./manual.aux) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./manual.out) (./manual.out) [1] Underfull \hbox (badness 10000) in paragraph at lines 42--49 Underfull \hbox (badness 10000) in paragraph at lines 42--49 Underfull \hbox (badness 10000) in paragraph at lines 42--49 \OT1/cmr/m/n/10 This man-ual is li-censed un-der the GNU Gen-eral Pub-lic Li-ce nse Underfull \hbox (badness 4279) in paragraph at lines 42--49 \OT1/cmr/m/n/10 ver-sion 2. More in-for-ma-tion about this li-cense can be foun d at [2] (./manual.toc [3] [4] [5] [6] [7] [8]) [9] [10] [11] [12] Chapter 1. (./commandline.tex [13] Overfull \hbox (1.64569pt too wide) in paragraph at lines 46--46 []\OT1/cmtt/m/n/7 % Any relation to real weather is purely coincidental.[] Overfull \hbox (20.43309pt too wide) in paragraph at lines 39--54 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 56--70 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 72--87 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 89--104 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 106--120 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 122--141 [] Underfull \vbox (badness 1616) has occurred while \output is active [14] Overfull \hbox (16.8051pt too wide) in paragraph at lines 155--156 \OT1/cmtt/m/n/10 converters.CSVLoader\OT1/cmr/m/n/10 , which can be used to im- port C45 datasets and comma/tab- [15] Overfull \hbox (63.24817pt too wide) in paragraph at lines 166--167 \OT1/cmr/m/n/10 Any learn-ing al-go-rithm in WEKA is de-rived from the ab-strac t \OT1/cmtt/m/n/10 weka.classifiers.Classifier [16] [17] [18] Overfull \hbox (2.46945pt too wide) in paragraph at lines 375--376 []\OT1/cmtt/m/n/10 meta.ClassificationViaRegression -W functions.LinearRegressi on [19] Overfull \hbox (20.43309pt too wide) in paragraph at lines 391--418 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 420--435 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 437--472 [] Underfull \vbox (badness 10000) has occurred while \output is active [20] Overfull \hbox (20.43309pt too wide) in paragraph at lines 474--511 [] [21] Overfull \hbox (0.61818pt too wide) in paragraph at lines 522--523 []\OT1/cmr/m/n/10 The \OT1/cmr/m/it/10 F-Measure \OT1/cmr/m/n/10 is sim-ply 2*P re-ci-sion*Recall/(Precision+Recall), a com-bined Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 0 diaporthe-stem-canker 0.9999672587892333 diaporthe-stem-can ker[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 1 diaporthe-stem-canker 0.9999992614503429 diaporthe-stem-can ker[] Overfull \hbox (6.6621pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 2 diaporthe-stem-canker 0.999998948559035 diaporthe-stem-cank er[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 3 diaporthe-stem-canker 0.9999998441238833 diaporthe-stem-can ker[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 4 diaporthe-stem-canker 0.9999989997681132 diaporthe-stem-can ker[] Overfull \hbox (2.9433pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 5 rhizoctonia-root-rot 0.9999999395928124 rhizoctonia-root-ro t[] Overfull \hbox (2.9433pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 7 rhizoctonia-root-rot 0.9999994386283236 rhizoctonia-root-ro t[] Underfull \hbox (badness 1953) in paragraph at lines 551--552 \OT1/cmr/m/n/10 dicted class value, the con-fi- Overfull \hbox (48.88585pt too wide) in paragraph at lines 533--555 [] Overfull \hbox (48.88585pt too wide) in paragraph at lines 557--580 [] Overfull \hbox (26.73993pt too wide) in paragraph at lines 592--593 \OT1/cmr/m/n/10 Dividing by the num-ber of in-stances in the test set, i.e. \OT 1/cmtt/m/n/10 wc -l < soybean-test.preds [22] (./includes/learning_curves.tex Overfull \hbox (67.78633pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.StratifiedRemoveFol ds -N 4 -F 1 -S $run -c last -i ../$f -o $run/t_$f[] Overfull \hbox (78.94272pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.StratifiedRemoveFol ds -N 4 -F 1 -S $run -V -c last -i ../$f -o $run/t0$f[] Overfull \hbox (38.03596pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.Resample -S 0 -Z 83 -c last -i $run/t$nr$f -o $run/t$nrp1$f[] [23]) Overfull \hbox (82.66151pt too wide) in paragraph at lines 663--663 [] \OT1/cmtt/m/n/7 -M "weka.classifiers.meta.ClassificationViaRegression -W weka.classifiers.functions.LinearRegression -- -S 1" \[] ) [24] [25] [26] Chapter 2. (./launching.tex [27] Overfull \hbox (9.861pt too wide) in paragraph at lines 86--87 []\OT1/cmr/bx/n/10 Weka on Source-forge \OT1/cmr/m/n/10 WEKA's project home-pag e on Source-forge.net. [28]) [29] [30] Chapter 3. (./simplecli.tex [31] [32] Overfull \hbox (67.06445pt too wide) in paragraph at lines 92--94 \OT1/cmr/m/n/10 with a dot (Unix/Linux: \OT1/cmtt/m/n/10 ./some/other/path/file \OT1/cmr/m/n/10 ; Win-dows: .$\OMS/cmsy/m/n/10 n$\OT1/cmr/m/n/10 Some$\OMS/cmsy /m/n/10 n$\OT1/cmr/m/n/10 Other$\OMS/cmsy/m/n/10 n$\OT1/cmr/m/n/10 Path$\OMS/cm sy/m/n/10 n$\OT1/cmr/m/n/10 file). ) [33] [34] Chapter 4. (./explorer.tex [35] [36] [37] [38] [39] Underfull \hbox (badness 10000) in paragraph at lines 298--308 [40] [41] [42] [43] [44] [45] [46] [47] [48] Underfull \hbox (badness 10000) in paragraph at lines 657--666 [49] [50]) [51] [52] Chapter 5. (./experimenter.tex [53] [54] Underfull \vbox (badness 1082) has occurred while \output is active [55] [56] [57] [58] [59] Underfull \vbox (badness 10000) has occurred while \output is active [60] [61] [62] Underfull \vbox (badness 7704) has occurred while \output is active [63] [64] [65] Underfull \vbox (badness 10000) has occurred while \output is active [66] Overfull \hbox (74.99634pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Key_Scheme {weka.classifiers.rules.ZeroR,weka.cl assifiers.trees.J48}[] Overfull \hbox (38.24666pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Key_Scheme_version_ID {48055541465867954,-217733 168393644444}[] [67] Overfull \hbox (1.49698pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Summary {'Number of leaves: 3\nSize of the tree: 5\n',[] Overfull \hbox (48.74657pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 iris,1,weka.classifiers.rules.ZeroR,,48055541465867954,2005 1221.033,99,51,[] Overfull \hbox (69.74638pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 17,34,0,33.333333,66.666667,0,0,0.444444,0.471405,100,100,8 0.833088,80.833088,[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 0,1.584963,1.584963,0,0,0,0,1,17,1,34,0,0,0,0,0.333333,1,0. 5,0.5,0,0,?,?,?,?[] [68] [69] Underfull \vbox (badness 10000) has occurred while \output is active [70] Underfull \vbox (badness 10000) has occurred while \output is active [71] [72] [73] Overfull \hbox (38.24666pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 ClassifierSplitEvaluator: weka.classifiers.trees.J48 -C 0.25 -M 2(version[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 Correctly Classified Instances 47 92. 1569 %[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 Incorrectly Classified Instances 4 7. 8431 %[] [74] [75] [76] Overfull \hbox (0.2135pt too wide) in paragraph at lines 584--585 []\OT1/cmr/m/n/10 As with the other Re-sult-Pro-duc-ers, ad-di-tional schemes c an be de-fined. When Underfull \vbox (badness 10000) has occurred while \output is active [77] Underfull \vbox (badness 10000) has occurred while \output is active [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 605--610 Overfull \hbox (34.37631pt too wide) in paragraph at lines 613--614 [] [80] [81] Overfull \hbox (8.24261pt too wide) in paragraph at lines 656--657 [] [82] Overfull \hbox (17.30408pt too wide) in paragraph at lines 686--687 []\OT1/cmr/m/n/10 Additional jar archives, i.e., JDBC drivers, are stored in \O T1/cmtt/m/n/10 /home/johndoe/jars\OT1/cmr/m/n/10 . [83] Overfull \hbox (12.8892pt too wide) in paragraph at lines 737--738 []\OT1/cmr/m/n/10 Create a script, called \OT1/cmtt/m/n/10 /home/johndoe/remote []engine/startRemoteEngine\OT1/cmr/m/n/10 , Overfull \hbox (22.24724pt too wide) in paragraph at lines 745--745 [] \OT1/cmtt/m/n/10 -classpath /home/johndoe/jars/hsqldb.jar:remoteEngine.jar \[] Overfull \hbox (16.99728pt too wide) in paragraph at lines 753--753 [] \OT1/cmtt/m/n/10 -classpath /home/johndoe/jars/mysql.jar:remoteEngine.jar \[] [84] Overfull \hbox (75.70413pt too wide) in paragraph at lines 778--779 []\OT1/cmr/m/n/10 Edit this file and change the "\OT1/cmtt/m/n/9 jdbcURL=jdbc:h sqldb:hsql://server[]name/database[]name\OT1/cmr/m/n/9 " Overfull \hbox (11.41405pt too wide) in paragraph at lines 778--779 \OT1/cmr/m/n/9 server (e.g., \OT1/cmtt/m/n/9 jdbcURL=jdbc:hsqldb:hsql://dodo.co mpany.com/experiment\OT1/cmr/m/n/9 ). Overfull \hbox (89.44553pt too wide) in paragraph at lines 785--785 [] \OT1/cmtt/m/n/9 -cp /home/johndoe/jars/hsqldb.jar:remoteEngine.jar:/home/j ohndoe/weka/weka.jar \[] Overfull \hbox (70.97919pt too wide) in paragraph at lines 791--792 []\OT1/cmr/m/n/10 Edit this file and change the "\OT1/cmtt/m/n/9 jdbcURL=jdbc:m ysql://server[]name:3306/database[]name\OT1/cmr/m/n/9 " Overfull \hbox (84.72058pt too wide) in paragraph at lines 798--798 [] \OT1/cmtt/m/n/9 -cp /home/johndoe/jars/mysql.jar:remoteEngine.jar:/home/jo hndoe/weka/weka.jar \[] [85] Overfull \hbox (10.74715pt too wide) in paragraph at lines 832--833 []\OT1/cmtt/m/n/10 01:13:19: RemoteExperiment (//blabla.company.com/RemoteEngin e) Overfull \hbox (9.27715pt too wide) in paragraph at lines 832--833 \OT1/cmtt/m/n/10 java.sql.SQLException: Table already exists: EXPERIMENT[]INDEX Overfull \hbox (2.55719pt too wide) in paragraph at lines 832--833 \OT1/cmtt/m/n/10 LONGVARCHAR, Experiment[]setup LONGVARCHAR, Result[]table INT )] Overfull \hbox (5.4972pt too wide) in paragraph at lines 834--835 \OT1/cmtt/m/n/10 (//blabla.company.com/RemoteEngine) (sub)experiment (datataset Overfull \hbox (5.4972pt too wide) in paragraph at lines 834--835 \OT1/cmtt/m/n/10 vineyard.arff) failed : java.sql.SQLException: Table already Overfull \hbox (11.5871pt too wide) in paragraph at lines 834--835 \OT1/cmtt/m/n/10 Experiment[]index ( Experiment[]type LONGVARCHAR, Experiment[] setup [86] [87] [88] Underfull \vbox (badness 10000) has occurred while \output is active [89] [90] [91] Underfull \vbox (badness 10000) has occurred while \output is active [92] ) [93] [94] Chapter 6. (./knowledgeflow.tex [95] [96] [97] [98] Overfull \hbox (36.43697pt too wide) in paragraph at lines 133--135 []\OT1/cmr/m/it/10 ClassifierPerformanceEvaluator \OT1/cmr/m/n/10 - eval-u-ate the per-for-mance of batch trained/tested Overfull \hbox (35.54247pt too wide) in paragraph at lines 137--139 []\OT1/cmr/m/it/10 ClustererPerformanceEvaluator \OT1/cmr/m/n/10 - eval-u-ate t he per-for-mance of batch trained/tested [99] [100] [101] [102] Overfull \hbox (11.53027pt too wide) in paragraph at lines 268--269 [] [103] [104] Overfull \hbox (24.88557pt too wide) in paragraph at lines 359--360 [] [105] [106] Overfull \hbox (1.07347pt too wide) in paragraph at lines 435--453 \OT1/cmr/m/n/10 mech-a-nism. Plu-g-ins are in-stalled in a di-rec-tory called [ ][]\OT1/cmtt/m/n/10 .knowledgeFlow/plugins Overfull \hbox (69.74638pt too wide) in paragraph at lines 475--475 []\OT1/cmtt/m/n/10 cygnus:~ mhall$ jar tvf /Users/mhall/.knowledgeFlow/plugins/ kettle/kettleKF.jar[] Overfull \hbox (38.24666pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 2812 Wed Feb 20 14:01:20 NZDT 2008 weka/gui/beans/icons/Ke ttleInput.gif[] Overfull \hbox (85.49625pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 2812 Wed Feb 20 14:01:18 NZDT 2008 weka/gui/beans/icons/Ke ttleInput_animated.gif[] Overfull \hbox (17.24684pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 1839 Wed Feb 20 13:59:08 NZDT 2008 weka/gui/beans/KettleIn put.class[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 174 Tue Feb 19 15:27:24 NZDT 2008 weka/gui/beans/KettleIn putBeanInfo.class[] Overfull \hbox (48.74657pt too wide) in paragraph at lines 475--475 []\OT1/cmtt/m/n/10 cygnus:~ mhall$ more /Users/mhall/.knowledgeFlow/plugins/ket tle/Beans.props[] ) [107] [108] Chapter 7. (./arffviewer.tex [109] [110] [111] [112] ) [113] [114] Chapter 8. (./bayesnet.tex [115] [116] Underfull \vbox (badness 2103) has occurred while \output is active [117] Overfull \hbox (13.24905pt too wide) in paragraph at lines 180--185 \OT1/cmr/m/n/10 fer-ent from the ADTree clas-si-fier al-go-rithm from \OT1/cmtt /m/n/10 weka.classifiers.tree.ADTree\OT1/cmr/m/n/10 . [118] [119] [120] Underfull \hbox (badness 10000) in paragraph at lines 331--336 [121] Underfull \hbox (badness 10000) in paragraph at lines 352--356 Underfull \hbox (badness 10000) in paragraph at lines 361--376 [122] Overfull \hbox (38.44424pt too wide) has occurred while \output is active \OT1/cmr/m/sl/10 8.3. CONDITIONAL INDEPENDENCE TEST BASED STRUCTURE LEARNING \ OT1/cmr/m/n/10 123 [123] Overfull \hbox (106.49606pt too wide) in paragraph at lines 426--426 [] \OT1/cmtt/m/n/10 Rule 5: if no edges are directed then take a rand om one (first we can find)[] Underfull \hbox (badness 10000) in paragraph at lines 434--442 [124] Underfull \vbox (badness 1867) has occurred while \output is active [125] [126] [127] Overfull \hbox (28.27066pt too wide) in paragraph at lines 597--597 [] \OT1/cmtt/m/n/9 Sets test file. If missing, a cross-validation will b e performed on the[] [128] Overfull \hbox (14.09583pt too wide) in paragraph at lines 597--597 [] \OT1/cmtt/m/n/9 Retrieves the options from the XML-data instead of th e command line.[] [129] Overfull \hbox (57.99673pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 Use tournament selection (true) or maximum subpopul atin (false).[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 678--678 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 678--678 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 678--678 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [130] Overfull \hbox (42.24687pt too wide) in paragraph at lines 699--699 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 699--699 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 699--699 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 720--720 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 720--720 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 720--720 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [131] Overfull \hbox (42.24687pt too wide) in paragraph at lines 738--738 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 738--738 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 738--738 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 764--764 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 764--764 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 764--764 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 774--774 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 774--774 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 774--774 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [132] Overfull \hbox (42.24687pt too wide) in paragraph at lines 784--784 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 784--784 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 784--784 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 When determining whether an edge exists a search is performed[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 for a set Z that separates the nodes. MaxCardinalit y determines[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 the maximum size of the set Z. This greatly influen ces the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 Use tournament selection (true) or maximum subpopul atin (false).[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] [133] Overfull \hbox (31.74696pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [134] Overfull \hbox (42.24687pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [135] Overfull \hbox (42.24687pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (10.74715pt too wide) in paragraph at lines 961--961 [] \OT1/cmtt/m/n/10 Name of file containing network structure in BIF fo rmat[] [136] [137] Overfull \hbox (641.9914pt too wide) in paragraph at lines 1043--1043 []\OT1/cmtt/m/n/10 Scheme: weka.classifiers.bayes.BayesNet -D -B iris.xml -Q weka.classifiers.bayes.net.search.local.K2 -- -P 2 -S BAYES -E weka.classif iers.bayes.net.estimate.SimpleEstimator -- -A 0.5[] Overfull \hbox (106.49606pt too wide) in paragraph at lines 1061--1061 []\OT1/cmtt/m/n/10 Relation: iris-weka.filters.unsupervised.attribute.Discr etize-B2-M-1.0-Rfirst-last[] [138] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1123--1123 []\OT1/cmtt/m/n/10 Correctly Classified Instances 116 77. 3333 %[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1123--1123 []\OT1/cmtt/m/n/10 Incorrectly Classified Instances 34 22. 6667 %[] [139] [140] Underfull \hbox (badness 10000) in paragraph at lines 1181--1191 [141] Overfull \hbox (109.99007pt too wide) in paragraph at lines 1199--1200 [] Underfull \vbox (badness 4569) has occurred while \output is active [142] Overfull \hbox (31.52597pt too wide) in paragraph at lines 1232--1244 \OT1/cmr/m/n/10 vari-ables are dis-cretized us-ing the \OT1/cmtt/m/n/10 weka.fi lters.supervised.attribute.Discretize Underfull \vbox (badness 10000) has occurred while \output is active [143] [144] Underfull \hbox (badness 10000) in paragraph at lines 1298--1308 Overfull \hbox (5.15332pt too wide) in paragraph at lines 1316--1319 []\OT1/cmr/m/n/10 The Gen-er-ate Net-work menu al-lows gen-er-a-tion of a com-p lete ran-dom Bayesian [145] [146] Overfull \hbox (17.96149pt too wide) in paragraph at lines 1375--1376 [] Underfull \vbox (badness 10000) has occurred while \output is active [147] Overfull \hbox (11.45515pt too wide) in paragraph at lines 1409--1410 [] [148] [149] [150] Underfull \vbox (badness 1675) has occurred while \output is active [151] [152] [153] Overfull \hbox (76.10909pt too wide) in paragraph at lines 1570--1576 []\OT1/cmr/m/n/10 Create a class that de-rives from \OT1/cmtt/m/n/10 weka.class ifiers.bayes.net.search.SearchAlgorithm\OT1/cmr/m/n/10 . Overfull \hbox (6.74959pt too wide) in paragraph at lines 1570--1576 \OT1/cmr/m/n/10 validation based, you prob-a-bly want to de-rive from \OT1/cmtt /m/n/10 ScoreSearchAlgorithm\OT1/cmr/m/n/10 , Overfull \hbox (56.55356pt too wide) in paragraph at lines 1570--1576 \OT1/cmtt/m/n/10 CISearchAlgorithm \OT1/cmr/m/n/10 or \OT1/cmtt/m/n/10 CVSearch Algorithm \OT1/cmr/m/n/10 in-stead of de-riv-ing from \OT1/cmtt/m/n/10 SearchAl gorithm Overfull \hbox (29.2748pt too wide) in paragraph at lines 1577--1582 \OT1/cmtt/m/n/10 public void buildStructure(BayesNet bayesNet, Instances instan ces)\OT1/cmr/m/n/10 . Overfull \hbox (6.05424pt too wide) in paragraph at lines 1577--1582 \OT1/cmr/m/n/10 You can ac-cess the par-entsets us-ing \OT1/cmtt/m/n/10 bayesNe t.getParentSet(iAttribute) Overfull \hbox (10.74715pt too wide) in paragraph at lines 1583--1587 \OT1/cmtt/m/n/10 bayesNet.getParentSet(iAttribute).AddParent(iParent, instances ) Overfull \hbox (36.44255pt too wide) in paragraph at lines 1588--1596 []\OT1/cmr/m/n/10 Alternatively, im-ple-ment \OT1/cmtt/m/n/10 public void searc h(BayesNet bayesNet, Instances Overfull \hbox (2.57175pt too wide) in paragraph at lines 1617--1621 \OT1/cmtt/m/n/10 weka.classifiers.bayes.net.estimate.BayesNetEstimator\OT1/cmr/ m/n/10 . Let's say Overfull \hbox (29.2748pt too wide) in paragraph at lines 1622--1627 \OT1/cmtt/m/n/10 public void updateClassifier(BayesNet bayesNet, Instance insta nce)\OT1/cmr/m/n/10 , Overfull \hbox (31.74696pt too wide) in paragraph at lines 1622--1627 \OT1/cmtt/m/n/10 public double[] distributionForInstance(BayesNet bayesNet, Ins tance [154] Overfull \hbox (7.02576pt too wide) in paragraph at lines 1644--1648 \OT1/cmr/m/n/10 Use the class \OT1/cmtt/m/n/10 weka.filters.unsupervised.attrib ute.Discretize \OT1/cmr/m/n/10 to dis-cretize Overfull \hbox (27.74675pt too wide) in paragraph at lines 1644--1648 \OT1/cmtt/m/n/10 java weka.filters.unsupervised.attribute.Discretize -B 3 -i in file.arff Overfull \hbox (1.49698pt too wide) in paragraph at lines 1655--1659 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -B -N 10 -A 9 -C Overfull \hbox (1.49698pt too wide) in paragraph at lines 1661--1665 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -N 15 -A 20 -C 3 Overfull \hbox (22.4968pt too wide) in paragraph at lines 1667--1671 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -F alarm.xml -M 1000 [155] [156] Overfull \hbox (5.66734pt too wide) in paragraph at lines 1731--1735 []\OT1/cmr/m/n/10 Only leave-one-out, k-fold and cu-mu-la-tive cross-validation are im-ple-mented. Overfull \hbox (8.08392pt too wide) in paragraph at lines 1731--1735 \OT1/cmr/m/n/10 These im-ple-men-ta-tions can be made more ef-fi-cient and othe r cross-validation ) [157] [158] [159] [160] Chapter 9. (./arff.tex Overfull \hbox (6.74693pt too wide) in paragraph at lines 41--41 [] \OT1/cmtt/m/n/10 % (b) Donor: Michael Marshall (MARSHALL%PLU@io.arc.na sa.gov)[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 41--41 [] \OT1/cmtt/m/n/10 @ATTRIBUTE class {Iris-setosa,Iris-versicolor,Iris- virginica}[] [161] (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [162] Overfull \hbox (2.27603pt too wide) in paragraph at lines 116--117 \OT1/cmr/m/n/10 pos-si-ble val-ues: $\OML/cmm/m/it/10 <$\OT1/cmtt/m/n/10 nomina l-name1$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , $\OML/cmm/m/it/10 <$\OT1/cmtt/m/n /10 nominal-name2$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , $\OML/cmm/m/it/10 <$\OT 1/cmtt/m/n/10 nominal-name3$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , [163] [164] [165]) [166] Chapter 10. (./xrff.tex [167] Overfull \hbox (80.24629pt too wide) in paragraph at lines 127--127 [] \OT1/cmtt/m/n/10 [] [168] [169] [170]) [171] [172] Chapter 11. (./converters.tex [173] Overfull \hbox (10.74715pt too wide) in paragraph at lines 70--70 [] \OT1/cmtt/m/n/10 java weka.core.converters.CSVSaver -i iris.arff -o iris .csv[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 99--99 [] \OT1/cmtt/m/n/10 java weka.core.converters.DatabaseLoader -Q "select * fro m employee"[] [174] Overfull \hbox (15.9971pt too wide) in paragraph at lines 104--104 [] \OT1/cmtt/m/n/10 java weka.core.converters.DatabaseSaver -i iris.arff -T iris[] ) [175] [176] Chapter 12. (./stemmers.tex Overfull \hbox (68.33246pt too wide) in paragraph at lines 29--30 \OT1/cmr/m/n/10 Weka con-tains a wrap-per class for the Snow-ball (home-page: [ ][][][]) [177] Overfull \hbox (46.33209pt too wide) in paragraph at lines 49--50 []\OT1/cmr/m/n/10 within the String-ToWord-Vec-tor (pack-age \OT1/cmtt/m/n/10 w eka.filters.unsupervised.attribute\OT1/cmr/m/n/10 ) Overfull \hbox (4.85867pt too wide) in paragraph at lines 73--74 \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 GenericObjectEditor.props\OT1/cmr/m/n/10 / \OT1/cmtt/m/n/10 GenericPropertiesCreator.props \OT1/cmr/m/n/10 file ) [178] Chapter 13. (./databases.tex Overfull \hbox (9.77429pt too wide) in paragraph at lines 37--38 []\OT1/cmtt/m/n/10 DatabaseUtils.props.mssqlserver2005 \OT1/cmr/m/n/10 - MS SQL Server 2005 ($\OML/cmm/m/it/10 >\OT1/cmr/m/n/10 =$3.4.11, Overfull \hbox (9.10817pt too wide) in paragraph at lines 39--41 []\OT1/cmtt/m/n/10 DatabaseUtils.props.odbc \OT1/cmr/m/n/10 - ODBC ac-cess via Sun's ODBC/JDBC bridge, Underfull \hbox (badness 10000) in paragraph at lines 46--47 Underfull \hbox (badness 10000) in paragraph at lines 48--49 [179] [180] Overfull \hbox (89.10794pt too wide) in paragraph at lines 103--108 \OT1/cmtt/m/n/10 jdbc:postgresql://server.my.domain:5432/MyDatabase?user=$\OML/ cmm/m/it/10 <$\OT1/cmtt/m/n/10 ...$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 &passwor d=$\OML/cmm/m/it/10 <$\OT1/cmtt/m/n/10 ...$\OML/cmm/m/it/10 >$ Underfull \vbox (badness 3679) has occurred while \output is active [181] [182] Overfull \hbox (27.9972pt too wide) in paragraph at lines 183--185 [][][][] Overfull \hbox (0.8047pt too wide) in paragraph at lines 201--202 \OT1/cmr/m/n/10 com-mand \OT1/cmtt/m/n/10 java weka.core.SystemInfo \OT1/cmr/m/ n/10 and check whether the prop- ) [183] [184] Chapter 14. (./windows_databases.tex [185] [186]) [187] [188] [189] [190] Chapter 15. (./research.tex Overfull \hbox (31.02701pt too wide) in paragraph at lines 32--33 \OT1/cmr/m/n/10 ter-face it is now easy to ex-tract all the pa-per ref-er-ences via \OT1/cmtt/m/n/10 weka.core.ClassDiscovery [191] (./includes/get_wekatechinfo.tex [192] Overfull \hbox (90.0991pt too wide) in paragraph at lines 124--124 []\OT1/cmtt/m/n/7 TECHINFOHANDLERS=`$JAVA weka.core.ClassDiscovery $TECHINFOHAN DLER $PACKAGES | grep "\. weka" | sed s/".*weka"/weka/g`[] )) [193] [194] Chapter 16. (./using_api.tex Underfull \hbox (badness 10000) in paragraph at lines 35--40 [195] Overfull \hbox (3.8326pt too wide) in paragraph at lines 104--113 \OT1/cmr/m/n/10 support-vector ma-chine clas-si-fier \OT1/cmr/m/it/10 SMO \OT1/ cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 weka.classifiers.functions\OT1/cmr/m/n/10 ) [196] Overfull \hbox (8.05441pt too wide) in paragraph at lines 125--130 \OT1/cmr/m/n/10 method, it is best to have a look at the \OT1/cmtt/m/n/10 setOp tions(String[]) \OT1/cmr/m/n/10 and \OT1/cmtt/m/n/10 getOptions() Overfull \hbox (6.08145pt too wide) in paragraph at lines 140--148 []\OT1/cmr/m/n/10 A \OT1/cmtt/m/n/10 SelectedTag \OT1/cmr/m/n/10 gets con-struc ted us-ing the ar-ray of all pos-si-ble \OT1/cmtt/m/n/10 weka.core.Tag Overfull \hbox (11.99689pt too wide) in paragraph at lines 156--156 [] \OT1/cmtt/m/n/10 setEvaluation(new SelectedTag(EVALUATION_CC, TAGS_EVALU ATION));[] [197] Overfull \hbox (1.93398pt too wide) in paragraph at lines 178--183 \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 attribute(int) \OT1/cmr/m/n/10 method. Thi s method re-turns \OT1/cmtt/m/n/10 weka.core.Attribute Overfull \hbox (27.33139pt too wide) in paragraph at lines 203--206 []\OT1/cmr/m/n/10 The \OT1/cmtt/m/n/10 DataSource \OT1/cmr/m/n/10 class (in-ner class of the \OT1/cmtt/m/n/10 weka.core.converters.ConverterUtils [198] Underfull \hbox (badness 10000) in paragraph at lines 246--249 Overfull \hbox (3.25064pt too wide) in paragraph at lines 299--301 \OT1/cmr/m/n/10 loaded into mem-ory and then pro-vided row-by-row (``pseudo-inc remental''). [199] [200] Overfull \hbox (21.26906pt too wide) in paragraph at lines 318--321 \OT1/cmr/m/n/10 The class \OT1/cmtt/m/n/10 wekaexamples.core.CreateInstances \O T1/cmr/m/n/10 of the \OT1/cmr/m/it/10 Weka Ex-am-ples \OT1/cmr/m/n/10 collectio n[[]] Overfull \hbox (41.44293pt too wide) in paragraph at lines 332--335 \OT1/cmr/m/n/10 For all of the dif-fer-ent at-tribute types, WEKA uses the same class, \OT1/cmtt/m/n/10 weka.core.Attribute\OT1/cmr/m/n/10 , Overfull \hbox (0.24724pt too wide) in paragraph at lines 351--351 []\OT1/cmtt/m/n/10 Attribute date = new Attribute("name_of_attr", "yyyy-MM-dd" );[] Overfull \hbox (36.99692pt too wide) in paragraph at lines 372--372 []\OT1/cmtt/m/n/10 Attribute string = new Attribute("name_of_attr", (FastVecto r) null);[] Underfull \vbox (badness 10000) has occurred while \output is active [201] Overfull \vbox (28.493pt too high) has occurred while \output is active [202] Overfull \hbox (21.24706pt too wide) in paragraph at lines 390--390 []\OT1/cmtt/m/n/10 Attribute relational = new Attribute("name_of_attr", rel_st ruct);[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 408--408 [] \OT1/cmtt/m/n/10 Instances dataset = new Instances("Test-dataset", attribu tes, 0);[] Overfull \hbox (9.12917pt too wide) in paragraph at lines 418--421 \OT1/cmr/m/n/10 to it, row by row. There are ba-si-cally two con-struc-tors of the \OT1/cmtt/m/n/10 weka.core.Instance Overfull \hbox (12.8311pt too wide) in paragraph at lines 422--426 []\OT1/cmtt/m/n/10 Instance(double weight, double[] attValues) \OT1/cmr/m/n/10 -- gen-er-ates an \OT1/cmtt/m/n/10 Instance Overfull \vbox (34.59024pt too high) has occurred while \output is active [203] Overfull \hbox (21.24706pt too wide) in paragraph at lines 468--468 []\OT1/cmtt/m/n/10 values[3] = data.attribute(3).addStringValue("This is a str ing");[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 480--480 []\OT1/cmtt/m/n/10 Instances dataRel = new Instances(data.attribute(4).relatio n(),0);[] [204] Overfull \hbox (24.165pt too wide) in paragraph at lines 501--504 \OT1/cmr/m/n/10 Simply gen-er-at-ing an ARFF file is achieved us-ing the static \OT1/cmtt/m/n/10 DataGenerator.makeData Overfull \hbox (28.96251pt too wide) in paragraph at lines 501--504 \OT1/cmr/m/n/10 method. In or-der to write to a file, the gen-er-a-tor needs to have a \OT1/cmtt/m/n/10 java.io.PrintWriter Overfull \hbox (6.74693pt too wide) in paragraph at lines 520--520 [] \OT1/cmtt/m/n/10 new java.io.BufferedWriter(new java.io.FileWriter("rdg1.ar ff")));[] [205] Overfull \hbox (20.5538pt too wide) in paragraph at lines 567--570 []\OT1/cmr/m/n/10 Using the \OT1/cmtt/m/n/10 Randomize \OT1/cmr/m/n/10 fil-ter (pack-age \OT1/cmtt/m/n/10 weka.filters.unsupervised.instance\OT1/cmr/m/n/10 ). [206] [207] Overfull \hbox (22.4968pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 remove.setInputFormat(data); // inform filter abo ut dataset[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 // **AFTER** setting options[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 Instances newData = Filter.useFilter(data, remove); // ap ply filter[] Overfull \hbox (18.08133pt too wide) in paragraph at lines 672--677 \OT1/cmr/m/n/10 A com-mon trap to fall into is set-ting op-tions \OT1/cmr/bx/n/ 10 af-ter \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 setInputFormat(Instances) Overfull \hbox (5.97029pt too wide) in paragraph at lines 689--693 \OT1/cmr/m/n/10 with the \OT1/cmtt/m/n/10 Standardize \OT1/cmr/m/n/10 fil-ter ( pack-age \OT1/cmtt/m/n/10 weka.filters.unsupervised.attribute\OT1/cmr/m/n/10 ): [208] Overfull \hbox (17.5531pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 like \OT1/cmtt/m/n/10 FilteredClassifier \OT1/cmr/m/n/10 (pack- age \OT1/cmtt/m/n/10 weka.classifiers.meta\OT1/cmr/m/n/10 ), \OT1/cmtt/m/n/10 F ilteredClusterer Overfull \hbox (12.72011pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 weka.clusterers\OT1/cmr/m/n/10 ), \O T1/cmtt/m/n/10 FilteredAssociator \OT1/cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 we ka.associations\OT1/cmr/m/n/10 ) Overfull \hbox (27.16393pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 and \OT1/cmtt/m/n/10 FilteredAttributeEval\OT1/cmr/m/n/10 /\OT1 /cmtt/m/n/10 FilteredSubsetEval \OT1/cmr/m/n/10 (in \OT1/cmtt/m/n/10 weka.attri buteSelection\OT1/cmr/m/n/10 ). [209] Overfull \hbox (20.1095pt too wide) in paragraph at lines 817--824 \OT1/cmr/m/n/10 All in-cre-men-tal clas-si-fiers in WEKA im-ple-ment the in-ter -face \OT1/cmtt/m/n/10 UpdateableClassifier Overfull \hbox (5.91695pt too wide) in paragraph at lines 831--833 []\OT1/cmr/m/it/10 update \OT1/cmr/m/n/10 the model row-by-row, by call-ing the \OT1/cmtt/m/n/10 updateClassifier(Instance) [210] [211] Overfull \hbox (21.05566pt too wide) in paragraph at lines 872--874 \OT1/cmr/m/n/10 The eval-u-a-tion step, in-clud-ing col-lec-tion of statis-tics , is per-formed by the \OT1/cmtt/m/n/10 Evaluation [212] Overfull \hbox (11.99689pt too wide) in paragraph at lines 910--910 [] \OT1/cmtt/m/n/10 System.out.println(eval.toSummaryString("\nResults\n\n", false));[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 940--940 [] \OT1/cmtt/m/n/10 System.out.println(eval.toSummaryString("\nResults\n\n", false));[] [213] Overfull \hbox (11.55396pt too wide) in paragraph at lines 950--952 []\OT1/cmtt/m/n/10 toClassDetailsString \OT1/cmr/m/n/10 -- out-puts TP/FP rates , pre-ci-sion, re-call, F-measure, Overfull \hbox (0.47084pt too wide) in paragraph at lines 952--954 []\OT1/cmtt/m/n/10 toCumulativeMarginDistributionString \OT1/cmr/m/n/10 -- out- puts the cu-mu-la-tive mar- [214] Overfull \hbox (27.74675pt too wide) in paragraph at lines 1017--1017 [] \OT1/cmtt/m/n/10 Instances unlabeled = DataSource.read("/some/where/unlabe led.arff");[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 1017--1017 [] \OT1/cmtt/m/n/10 double clsLabel = tree.classifyInstance(unlabeled.insta nce(i));[] Overfull \hbox (6.74693pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 double[] dist = cls.distributionForInstance(test.instan ce(i));[] Overfull \hbox (53.99652pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 System.out.print(test.instance(i).toString(test.classIn dex()) + " - ");[] Overfull \hbox (27.74675pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 System.out.print(test.classAttribute().value((int) pred ) + " - ");[] [215] Overfull \hbox (12.30984pt too wide) in paragraph at lines 1083--1087 []\OT1/cmr/m/it/10 build the model \OT1/cmr/m/n/10 with train-ing data -- call- ing the \OT1/cmtt/m/n/10 buildClusterer(Instances) Overfull \hbox (0.94284pt too wide) in paragraph at lines 1104--1108 \OT1/cmr/m/n/10 Incremental clus-ter-ers in WEKA im-ple-ment the in-ter-face \O T1/cmtt/m/n/10 UpdateableClusterer Overfull \hbox (13.7781pt too wide) in paragraph at lines 1112--1114 []\OT1/cmr/m/it/10 update \OT1/cmr/m/n/10 the model row-by-row by call-ing the the \OT1/cmtt/m/n/10 updateClusterer(Instance) Underfull \vbox (badness 10000) has occurred while \output is active [216] Overfull \vbox (79.67348pt too high) has occurred while \output is active [217] [218] Overfull \hbox (59.24648pt too wide) in paragraph at lines 1160--1160 [] \OT1/cmtt/m/n/10 System.out.println(ClusterEvaluation.evaluateClusterer(new EM(), options));[] Overfull \hbox (53.99652pt too wide) in paragraph at lines 1195--1195 [] \OT1/cmtt/m/n/10 DensityBasedClusterer clusterer = new ... // the clust erer to evaluate[] Overfull \hbox (64.49643pt too wide) in paragraph at lines 1195--1195 [] \OT1/cmtt/m/n/10 new Random(1)); // and rando m number generator[] [219] Overfull \hbox (0.24724pt too wide) in paragraph at lines 1222--1222 [] \OT1/cmtt/m/n/10 filter.setAttributeIndices("" + (data.classIndex() + 1) );[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 1222--1222 [] \OT1/cmtt/m/n/10 Instances dataClusterer = Filter.useFilter(data, filter );[] [220] Overfull \hbox (3.69315pt too wide) in paragraph at lines 1247--1249 []\OT1/cmtt/m/n/10 clusterInstance(Instance) \OT1/cmr/m/n/10 -- de-ter-mines th e clus-ter the \OT1/cmtt/m/n/10 Instance \OT1/cmr/m/n/10 would Overfull \hbox (6.74693pt too wide) in paragraph at lines 1276--1276 [] \OT1/cmtt/m/n/10 int cluster = clusterer.clusterInstance(dataset2.instan ce(i));[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 1276--1276 [] \OT1/cmtt/m/n/10 double[] dist = clusterer.distributionForInstance(datas et2.instance(i));[] [221] Underfull \hbox (badness 10000) in paragraph at lines 1285--1290 Overfull \hbox (3.35565pt too wide) in paragraph at lines 1293--1298 []\OT1/cmr/m/it/10 single at-tribute eval-u-a-tors \OT1/cmr/m/n/10 -- per-form eval-u-a-tions on sin-gle at-tributes. These [222] Overfull \hbox (64.49643pt too wide) in paragraph at lines 1378--1378 [] \OT1/cmtt/m/n/10 AttributeSelectedClassifier classifier = new AttributeSel ectedClassifier();[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 1378--1378 [] \OT1/cmtt/m/n/10 evaluation.crossValidateModel(classifier, data, 10, new R andom(1));[] [223] Overfull \hbox (27.4348pt too wide) in paragraph at lines 1383--1388 \OT1/cmr/m/n/10 train-ing a clas-si-fier, then the fil-ter ap-proach is the rig ht one. The \OT1/cmtt/m/n/10 AttributeSelection [224] [225] Overfull \hbox (50.86061pt too wide) in paragraph at lines 1465--1470 \OT1/cmr/m/n/10 ing the data or use an ex-plicit con-verter (all savers are lo- cated in the \OT1/cmtt/m/n/10 weka.core.converters Overfull \hbox (22.94261pt too wide) in paragraph at lines 1471--1474 []\OT1/cmr/m/n/10 Use the \OT1/cmtt/m/n/10 DataSink \OT1/cmr/m/n/10 class (in-n er class of \OT1/cmtt/m/n/10 weka.core.converters.ConverterUtils\OT1/cmr/m/n/10 ), [226] [227] Overfull \hbox (34.02615pt too wide) in paragraph at lines 1575--1578 \OT1/cmr/m/n/10 tions, us-ing the \OT1/cmtt/m/n/10 ThresholdCurve \OT1/cmr/m/n/ 10 class (pack-age \OT1/cmtt/m/n/10 weka.classifiers.evaluation\OT1/cmr/m/n/10 ). Overfull \hbox (30.6928pt too wide) in paragraph at lines 1580--1583 \OT1/cmr/m/n/10 in-stance of the \OT1/cmtt/m/n/10 ThresholdVisualizePanel \OT1/ cmr/m/n/10 class (pack-age \OT1/cmtt/m/n/10 weka.gui.visualize\OT1/cmr/m/n/10 ) . Overfull \hbox (5.4972pt too wide) in paragraph at lines 1594--1594 []\OT1/cmtt/m/n/10 Instances curve = tc.getCurve(eval.predictions(), classInde x);[] Overfull \hbox (15.9971pt too wide) in paragraph at lines 1610--1610 [] \OT1/cmtt/m/n/10 Utils.doubleToString(ThresholdCurve.getROCArea(curve),4)+ ")");[] [228] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1665--1665 [] \OT1/cmtt/m/n/10 JFrame jf = new JFrame("Weka Classifier Tree Visualizer: J48");[] [229] [230] [231] Overfull \hbox (17.24684pt too wide) in paragraph at lines 1778--1778 [] \OT1/cmtt/m/n/10 Object o[] = SerializationHelper.readAll("/some/where/j48 .model");[] ) [232] Chapter 17. (./extending.tex [233] (./extending_classifier.tex Underfull \vbox (badness 10000) has occurred while \output is active [234] Overfull \vbox (64.17354pt too high) has occurred while \output is active [235] [236] [237] Overfull \hbox (6.74693pt too wide) in paragraph at lines 192--192 [] \OT1/cmtt/m/n/10 result.addAll(Arrays.asList(super.getOptions())); // sup erclass[] Overfull \hbox (30.47186pt too wide) in paragraph at lines 227--231 \OT1/cmr/m/n/10 re-turns the class prob-a-bil-i-ties ar-ray of the pre-dic-tion for the given \OT1/cmtt/m/n/10 weka.core.Instance [238] Overfull \hbox (42.88777pt too wide) in paragraph at lines 232--243 \OT1/cmr/m/n/10 bel in-dex based on the prob-a-bil-i-ties ar-ray that the \OT1/ cmtt/m/n/10 distributionForInstance(Instance) [239] [240] [241] Underfull \hbox (badness 10000) in paragraph at lines 360--374 Overfull \hbox (0.55939pt too wide) in paragraph at lines 390--397 []\OT1/cmr/m/it/10 multi-instance clas-si-fiers \OT1/cmr/m/n/10 -- in or-der to sig-nal that the spe-cial multi-instance Overfull \hbox (5.27605pt too wide) in paragraph at lines 390--397 \OT1/cmr/m/n/10 instance, \OT1/cmtt/m/n/10 weka.core.MultiInstanceCapabilitiesH andler\OT1/cmr/m/n/10 , which re-turns [242] Overfull \hbox (5.08153pt too wide) in paragraph at lines 441--446 \OT1/cmr/m/n/10 in case of de-scen-dants of the \OT1/cmtt/m/n/10 weka.classifie r.MultipleClassifiersCombiner\OT1/cmr/m/n/10 , Overfull \hbox (14.09583pt too wide) in paragraph at lines 461--461 [] \OT1/cmtt/m/n/9 result.enable(Capability.NOMINAL_CLASS); // only nominal classes allowed[] [243] Overfull \vbox (104.0pt too high) has occurred while \output is active [244] [245] Overfull \hbox (17.24684pt too wide) in paragraph at lines 603--603 [] \OT1/cmtt/m/n/10 weka.core.CheckOptionHandler -W classname [-- additional pa rameters][] Overfull \hbox (59.46141pt too wide) in paragraph at lines 640--645 \OT1/cmr/m/n/10 class. The su-per-class for clas-si-fier unit tests is \OT1/cmt t/m/n/10 weka.classifiers.AbstractClassifierTest\OT1/cmr/m/n/10 . ) [246] (./extending_filter.tex Overfull \hbox (26.02608pt too wide) in paragraph at lines 63--67 \OT1/cmtt/m/n/10 weka.filters.Filter \OT1/cmr/m/n/10 su-per-class does not im-p le-ment the \OT1/cmtt/m/n/10 weka.core.OptionHandler [247] [248] Overfull \hbox (34.38815pt too wide) in paragraph at lines 125--132 \OT1/cmr/m/n/10 de-ter-mine what the out-put for-mat will be (and set if via \O T1/cmtt/m/n/10 setOutputFormat(Instances)\OT1/cmr/m/n/10 ) [249] (./includes/BatchFilter.tex) [250] (./includes/BatchFilter2.tex) [251] (./includes/BatchFilter3.tex) Overfull \vbox (68.45831pt too high) has occurred while \output is active [252] (./includes/StreamFilter.tex) [253] [254] (./includes/SimpleBatch.tex Overfull \hbox (33.25543pt too wide) in paragraph at lines 45--45 [] \OT1/cmtt/m/n/8 return "A simple batch filter that adds an additional a ttribute 'blah' at the end "[] Overfull \hbox (7.75507pt too wide) in paragraph at lines 45--45 [] \OT1/cmtt/m/n/8 result.enable(Capability.NO_CLASS); //// filter doesn't need class to be set//[] ) [255] [256] (./includes/SimpleStream.tex Overfull \hbox (7.75507pt too wide) in paragraph at lines 50--50 [] \OT1/cmtt/m/n/8 result.enable(Capability.NO_CLASS); //// filter doesn't need class to be set//[] ) [257] Overfull \hbox (15.32312pt too wide) in paragraph at lines 319--322 \OT1/cmr/m/n/10 bu-tions into ac-count. Must im-ple-ment the \OT1/cmtt/m/n/10 w eka.filters.SupervisedFilter Overfull \hbox (0.93573pt too wide) in paragraph at lines 336--338 \OT1/cmr/m/n/10 The Javadoc gen-er-a-tion works the same as with clas-si-fiers. See sec-tion ``Javadoc'' [258] Overfull \hbox (17.24684pt too wide) in paragraph at lines 360--360 [] \OT1/cmtt/m/n/10 weka.core.CheckOptionHandler -W classname [-- additional pa rameters][] Overfull \hbox (77.71982pt too wide) in paragraph at lines 386--390 []\OT1/cmr/m/n/10 Here is an ex-am-ple call for \OT1/cmtt/m/n/10 weka.filters.u nsupervised.attribute.ReplaceMissingValues ) [259] (./extending_other_algorithms.tex Overfull \hbox (1.7496pt too wide) in paragraph at lines 36--39 \OT1/cmr/m/n/10 like the \OT1/cmtt/m/n/10 FilteredClusterer \OT1/cmr/m/n/10 tha t fil-ters the data on-the-fly for the base-clusterer. Underfull \hbox (badness 10000) in paragraph at lines 36--39 Overfull \hbox (56.46068pt too wide) in paragraph at lines 50--55 \OT1/cmr/m/n/10 one way or an-other. \OT1/cmtt/m/n/10 RandomizableClusterer\OT1 /cmr/m/n/10 , \OT1/cmtt/m/n/10 RandomizableDensityBasedClusterer [260] Overfull \hbox (3.24855pt too wide) in paragraph at lines 116--118 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.c lusterers.AbstractClustererTest [261] Overfull \hbox (0.3597pt too wide) in paragraph at lines 137--140 \OT1/cmr/m/n/10 The an-ces-tor for all eval-u-a-tors is the \OT1/cmtt/m/n/10 we ka.attributeSelection.ASEvaluation Underfull \hbox (badness 10000) in paragraph at lines 137--140 [262] Overfull \hbox (10.55435pt too wide) in paragraph at lines 189--192 \OT1/cmr/m/n/10 The an-ces-tor for all search al-go-rithms is the \OT1/cmtt/m/n /10 weka.attributeSelection.ASSearch Underfull \hbox (badness 10000) in paragraph at lines 189--192 Overfull \hbox (45.24818pt too wide) in paragraph at lines 216--220 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.a ttributeSelection.AbstractEvaluatorTest [263] Overfull \hbox (5.08264pt too wide) in paragraph at lines 228--235 \OT1/cmr/m/n/10 can also im-ple-ment a meta-associator, de-rived from \OT1/cmtt /m/n/10 SingleAssociatorEnhancer\OT1/cmr/m/n/10 . Overfull \hbox (1.49698pt too wide) in paragraph at lines 258--258 [] \OT1/cmtt/m/n/10 public void buildAssociations(Instances data) throws Excep tion {[] [264] Overfull \hbox (1.49698pt too wide) in paragraph at lines 283--283 [] \OT1/cmtt/m/n/10 AbstractAssociator.runAssociator(new FunkyAssociator(), args);[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 290--290 [] \OT1/cmtt/m/n/10 weka.associations.CheckAssociator -W classname [further op tions][] ) Overfull \hbox (18.99841pt too wide) in paragraph at lines 291--62 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.a ssociations.AbstractAssociatorTest [265] (./extending_explorer.tex Overfull \hbox (11.74733pt too wide) in paragraph at lines 41--44 []\OT1/cmtt/m/n/10 weka.gui.explorer.Explorer.CapabilitiesFilterChangeListener Overfull \hbox (18.02759pt too wide) in paragraph at lines 45--47 []\OT1/cmr/m/n/10 adding the class-name of your class to the Tabs prop-erty in the \OT1/cmtt/m/n/10 Explorer.props Overfull \hbox (68.49664pt too wide) in paragraph at lines 85--85 [] \OT1/cmtt/m/n/10 /** sends notifications when the set of working instances gets changed*/[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 85--85 [] \OT1/cmtt/m/n/10 protected PropertyChangeSupport m_Support = new PropertyC hangeSupport(this);[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 return "SQL"; // what's displayed as tab-title, e.g., Classify[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 return "Retrieving data from databases"; // the toolti p of the tab[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 /** ignored, since we "generate" data and not receive it */[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 /** PropertyChangeListener which will be notified of valu e changes. */[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 public void addPropertyChangeListener(PropertyChangeListe ner l) {[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 public void removePropertyChangeListener(PropertyChangeLi stener l) {[] [266] Overfull \vbox (91.59024pt too high) has occurred while \output is active [267] Overfull \hbox (31.74696pt too wide) in paragraph at lines 138--138 [] \OT1/cmtt/m/n/10 /** the Load button - makes the data available in the Exp lorer */[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 Instances data = query.retrieveInstances(m_Viewer.g etQuery());[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 // set data in preprocess panel (also notifies of c apabilties changes)[] Overfull \hbox (5.4972pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 getExplorer().getPreprocessPanel().setInstances(dat a);[] Overfull \vbox (69.0pt too high) has occurred while \output is active [268] [269] Overfull \hbox (68.49664pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 /** sends notifications when the set of working instances gets changed*/[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 protected PropertyChangeSupport m_Support = new PropertyC hangeSupport(this);[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 return "DataGeneration"; // what's displayed as tab-ti tle, e.g., Classify[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 return "Generating artificial datasets"; // the toolti p of the tab[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 /** ignored, since we "generate" data and not receive it */[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 /** PropertyChangeListener which will be notified of valu e changes. */[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 public void addPropertyChangeListener(PropertyChangeListe ner l) {[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 public void removePropertyChangeListener(PropertyChangeLi stener l) {[] Overfull \vbox (92.50687pt too high) has occurred while \output is active [270] Overfull \hbox (89.49646pt too wide) in paragraph at lines 269--269 [] \OT1/cmtt/m/n/10 protected GenericObjectEditor m_GeneratorEditor = new Gen ericObjectEditor();[] Overfull \hbox (10.74715pt too wide) in paragraph at lines 269--269 [] \OT1/cmtt/m/n/10 protected JButton m_ButtonGenerate = new JButton("Generat e");[] Overfull \hbox (84.2465pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 DataGenerator generator = (DataGenerator) m_Generator Editor.getValue();[] Overfull \hbox (78.99655pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 String cname = generator.getClass().getName().replace All(".*\\.", "");[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 cmd += " "+Utils.joinOptions(((OptionHandler)genera tor).getOptions());[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 DataGenerator.makeData(generator, generator.getOpti ons());[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 getExplorer(), "Error generating data:\n" + ex.ge tMessage(),[] Overfull \vbox (48.0pt too high) has occurred while \output is active [271] Overfull \hbox (84.2465pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 Instances data = new Instances(new StringReader(m_O utput.getText()));[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 // set data in preprocess panel (also notifies of c apabilties changes)[] Overfull \hbox (5.4972pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 getExplorer().getPreprocessPanel().setInstances(dat a);[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 getExplorer(), "Error generating data:\n" + ex.ge tMessage(),[] Overfull \vbox (81.85202pt too high) has occurred while \output is active [272] Overfull \vbox (57.81944pt too high) has occurred while \output is active [273] Overfull \hbox (34.60944pt too wide) in paragraph at lines 418--422 \OT1/cmr/m/n/10 home di-rec-tory) un-der the key \OT1/cmtt/m/n/10 weka.gui.visu alize.plugins.VisualizePlugin\OT1/cmr/m/n/10 . [274] [275] )) [276] Chapter 18. (./technical_documentation.tex Underfull \hbox (badness 10000) in paragraph at lines 21--22 [277] Underfull \hbox (badness 10000) in paragraph at lines 81--82 Underfull \hbox (badness 10000) in paragraph at lines 83--84 Underfull \hbox (badness 10000) in paragraph at lines 85--93 Underfull \hbox (badness 10000) in paragraph at lines 94--95 Underfull \hbox (badness 10000) in paragraph at lines 96--97 Underfull \hbox (badness 10000) in paragraph at lines 98--99 Underfull \hbox (badness 10000) in paragraph at lines 104--105 Underfull \hbox (badness 10000) in paragraph at lines 106--107 Overfull \hbox (95.24629pt too wide) in paragraph at lines 114--115 [][][]\OT1/cmtt/m/n/10 export CLASSPATH=$CLASSPATH:/home/johndoe/jars/mysql-con nector-java-5.1.7-bin.jar Overfull \hbox (95.24629pt too wide) in paragraph at lines 120--121 [][][]\OT1/cmtt/m/n/10 setenv CLASSPATH $CLASSPATH:/home/johndoe/jars/mysql-con nector-java-5.1.7-bin.jar [278] Underfull \hbox (badness 10000) in paragraph at lines 141--143 Underfull \hbox (badness 10000) in paragraph at lines 146--147 Underfull \hbox (badness 10000) in paragraph at lines 148--149 Underfull \hbox (badness 10000) in paragraph at lines 150--151 Underfull \hbox (badness 10000) in paragraph at lines 152--154 Underfull \hbox (badness 10000) in paragraph at lines 163--165 Underfull \hbox (badness 10000) in paragraph at lines 170--176 [279] Overfull \hbox (7.98488pt too wide) in paragraph at lines 177--178 \OT1/cmr/m/n/10 Here's once again how you start the Weka Main-GUI \OT1/cmr/bx/n /10 with \OT1/cmr/m/n/10 your cur-rent [][]\OT1/cmtt/m/n/10 CLASSPATH Overfull \hbox (0.24724pt too wide) in paragraph at lines 181--182 [][]\OT1/cmtt/m/n/10 java -Xmx128m -classpath "%CLASSPATH%;weka.jar" weka.gui.M ain Underfull \hbox (badness 10000) in paragraph at lines 187--188 Underfull \hbox (badness 10000) in paragraph at lines 189--190 Underfull \hbox (badness 10000) in paragraph at lines 210--211 Underfull \hbox (badness 10000) in paragraph at lines 212--213 Underfull \hbox (badness 10000) in paragraph at lines 214--215 Overfull \hbox (37.9968pt too wide) in paragraph at lines 216--217 [][][][][] Underfull \hbox (badness 10000) in paragraph at lines 216--217 Underfull \hbox (badness 10000) in paragraph at lines 219--220 [280] Underfull \hbox (badness 10000) in paragraph at lines 223--224 Overfull \hbox (43.24675pt too wide) in paragraph at lines 225--226 [][][][][] Underfull \hbox (badness 10000) in paragraph at lines 245--246 [281] Overfull \hbox (14.55481pt too wide) in paragraph at lines 265--274 \OT1/cmr/m/n/10 run-time (rather than us-ing only those spec-i-fied in the [][] \OT1/cmtt/m/n/10 GenericObjectEditor.props Underfull \hbox (badness 10000) in paragraph at lines 300--306 [282] Overfull \vbox (24.59024pt too high) has occurred while \output is active [283] Underfull \hbox (badness 10000) in paragraph at lines 375--380 Underfull \hbox (badness 10000) in paragraph at lines 381--382 Underfull \hbox (badness 10000) in paragraph at lines 383--384 Underfull \hbox (badness 10000) in paragraph at lines 385--386 Overfull \hbox (3.66528pt too wide) in paragraph at lines 387--390 \OT1/cmr/m/n/10 Where the [][]\OT1/cmtt/m/n/10 []\OT1/cmr/m/n/10 cor-re-s ponds to a key in the [][]\OT1/cmtt/m/n/10 GenericPropertiesCreator.props Overfull \hbox (64.49643pt too wide) in paragraph at lines 412--412 []\OT1/cmtt/m/n/10 # exclude all ResultListeners that also implement the Result Producer interface[] [284] Underfull \hbox (badness 10000) in paragraph at lines 416--427 Overfull \hbox (53.24666pt too wide) in paragraph at lines 428--429 [][][]\OT1/cmtt/m/n/10 java -classpath "/development:/distribution/weka.jar" we ka.gui.GUIChooser Underfull \hbox (badness 10000) in paragraph at lines 428--429 [285] Underfull \hbox (badness 10000) in paragraph at lines 456--457 [286] [287] Underfull \hbox (badness 10000) in paragraph at lines 493--494 Underfull \hbox (badness 10000) in paragraph at lines 495--496 Underfull \hbox (badness 10000) in paragraph at lines 497--498 Underfull \hbox (badness 10000) in paragraph at lines 520--524 [288] Overfull \hbox (17.24684pt too wide) in paragraph at lines 567--567 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 574--577 Underfull \hbox (badness 10000) in paragraph at lines 577--585 [289] Underfull \hbox (badness 10000) in paragraph at lines 586--592 Overfull \hbox (21.24706pt too wide) in paragraph at lines 600--600 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 606--611 Overfull \hbox (26.49701pt too wide) in paragraph at lines 615--615 [] \OT1/cmtt/m/n/10 [] [290] Overfull \hbox (4.64594pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (4.64594pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (32.9956pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (37.72055pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (9.37088pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Underfull \hbox (badness 10000) in paragraph at lines 663--668 [291] Underfull \hbox (badness 10000) in paragraph at lines 722--723 Underfull \hbox (badness 10000) in paragraph at lines 724--725 [292] Overfull \hbox (43.80186pt too wide) in paragraph at lines 749--750 []\OT1/cmr/m/n/10 The DTD for KOML can be found at [][][][] Underfull \hbox (badness 10000) in paragraph at lines 749--750 Underfull \hbox (badness 10000) in paragraph at lines 751--752 Underfull \hbox (badness 10000) in paragraph at lines 753--754 Overfull \hbox (75.44197pt too wide) in paragraph at lines 756--759 \OT1/cmr/m/n/10 put file (see op-tions of [][]\OT1/cmtt/m/n/10 weka.experiment. Experiment []\OT1/cmr/m/n/10 and [][]\OT1/cmtt/m/n/10 weka.experiment.RemoteExp eriment Underfull \hbox (badness 10000) in paragraph at lines 783--790 Overfull \hbox (3.01225pt too wide) in paragraph at lines 799--805 \OT1/cmr/m/n/10 The GraphVi-su-al-izer ([][]\OT1/cmtt/m/n/10 weka.gui.graphvisu alizer.GraphVisualizer[]\OT1/cmr/m/n/10 ) can save [293] Overfull \hbox (17.24684pt too wide) in paragraph at lines 825--825 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (11.99689pt too wide) in paragraph at lines 825--825 [] \OT1/cmtt/m/n/10 [] ) [294] Chapter 19. (./other_resources.tex Underfull \hbox (badness 10000) in paragraph at lines 51--56 Underfull \hbox (badness 10000) in paragraph at lines 57--58 [295] Underfull \hbox (badness 10000) in paragraph at lines 65--68 Underfull \hbox (badness 10000) in paragraph at lines 91--93 Underfull \hbox (badness 10000) in paragraph at lines 94--95 Underfull \hbox (badness 10000) in paragraph at lines 106--108 Underfull \vbox (badness 1371) has occurred while \output is active [296] Overfull \hbox (5.99707pt too wide) in paragraph at lines 109--110 [][][]\OT1/cmtt/m/n/10 java weka.core.converters.CSVLoader filename.csv > filen ame.arff Underfull \hbox (badness 10000) in paragraph at lines 109--110 Underfull \hbox (badness 10000) in paragraph at lines 112--114 Underfull \hbox (badness 10000) in paragraph at lines 115--116 Underfull \hbox (badness 10000) in paragraph at lines 123--126 Underfull \hbox (badness 10000) in paragraph at lines 127--128 Overfull \hbox (16.19777pt too wide) in paragraph at lines 132--138 \OT1/cmr/m/n/10 Get-ting [][]\OT1/cmtt/m/n/10 java.lang.NoClassDefFoundError [] \OT1/cmr/m/n/10 ex-cep-tions? Most likely your \OT1/cmr/bx/n/10 CLASS- Underfull \hbox (badness 10000) in paragraph at lines 132--138 Underfull \hbox (badness 10000) in paragraph at lines 139--140 Underfull \hbox (badness 10000) in paragraph at lines 141--142 Underfull \hbox (badness 10000) in paragraph at lines 143--144 [297] Underfull \hbox (badness 10000) in paragraph at lines 145--148 Underfull \hbox (badness 10000) in paragraph at lines 149--150 Underfull \hbox (badness 10000) in paragraph at lines 159--162 [298] Overfull \hbox (69.74638pt too wide) in paragraph at lines 236--236 []\OT1/cmtt/m/n/10 /usr/share/themes/Mist/gtk-2.0/gtkrc:48: Engine "mist" is un supported, ignoring[] Overfull \hbox (153.74565pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at weka.gui.explorer.PreprocessPanel.addPropertyChang eListener(PreprocessPanel.java:519)[] Overfull \hbox (95.99615pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at javax.swing.plaf.synth.SynthPanelUI.installListene rs(SynthPanelUI.java:49)[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at javax.swing.plaf.synth.SynthPanelUI.installUI(Synt hPanelUI.java:38)[] Underfull \hbox (badness 10000) in paragraph at lines 245--247 Underfull \hbox (badness 10000) in paragraph at lines 248--249 Underfull \hbox (badness 10000) in paragraph at lines 250--251 Underfull \hbox (badness 10000) in paragraph at lines 252--253 Underfull \hbox (badness 10000) in paragraph at lines 255--256 [299] Underfull \hbox (badness 10000) in paragraph at lines 257--258 Overfull \hbox (9.16362pt too wide) in paragraph at lines 264--265 []\OT1/cmr/m/n/10 Java VM op-tions ([][][][]) ) (./bibliography.tex [300] Underfull \hbox (badness 3514) in paragraph at lines 31--35 []\OT1/cmr/m/it/10 Weka Ex-am-ples \OT1/cmr/m/n/10 -- A col-lec-tion of ex-am-p le classes, as part of Underfull \hbox (badness 5119) in paragraph at lines 31--35 \OT1/cmr/m/n/10 an ANT project, in-cluded in the WEKA snap-shots (avail-able Underfull \hbox (badness 10000) in paragraph at lines 31--35 \OT1/cmr/m/n/10 for down-load on the home-page) or di-rectly from sub-ver-sion Overfull \hbox (64.80228pt too wide) in paragraph at lines 31--35 [][][][] Underfull \vbox (badness 10000) has occurred while \output is active [301] Overfull \vbox (45.33775pt too high) has occurred while \output is active [302] Overfull \hbox (22.2144pt too wide) in paragraph at lines 103--106 []\OT1/cmr/m/n/9 Cozman. See [][][][] ) [303] (./manual.aux) LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information) Output written on manual.dvi (303 pages, 966796 bytes). Transcript written on manual.log. This is pdfTeX, Version 3.14159265-2.6-1.40.21 (TeX Live 2020/Debian) (preloaded format=latex) restricted \write18 enabled. entering extended mode (./manual.tex LaTeX2e <2020-10-01> patch level 4 L3 programming layer <2021-01-09> xparse <2020-03-03> (/usr/share/texlive/texmf-dist/tex/latex/base/book.cls Document Class: book 2020/04/10 v1.4m Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/bk10.clo)) (/usr/share/texlive/texmf-dist/tex/latex/graphics/epsfig.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphicx.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/keyval.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics/graphics.sty (/usr/share/texlive/texmf-dist/tex/latex/graphics/trig.sty) (/usr/share/texlive/texmf-dist/tex/latex/graphics-cfg/graphics.cfg) (/usr/share/texlive/texmf-dist/tex/latex/graphics-def/dvips.def)))) (/usr/share/texlive/texmf-dist/tex/latex/wrapfig/wrapfig.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hyperref.sty (/usr/share/texlive/texmf-dist/tex/generic/ltxcmds/ltxcmds.sty) (/usr/share/texlive/texmf-dist/tex/generic/iftex/iftex.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdftexcmds/pdftexcmds.sty (/usr/share/texlive/texmf-dist/tex/generic/infwarerr/infwarerr.sty)) (/usr/share/texlive/texmf-dist/tex/generic/kvsetkeys/kvsetkeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/kvdefinekeys/kvdefinekeys.sty) (/usr/share/texlive/texmf-dist/tex/generic/pdfescape/pdfescape.sty) (/usr/share/texlive/texmf-dist/tex/latex/hycolor/hycolor.sty) (/usr/share/texlive/texmf-dist/tex/latex/letltxmacro/letltxmacro.sty) (/usr/share/texlive/texmf-dist/tex/latex/auxhook/auxhook.sty) (/usr/share/texlive/texmf-dist/tex/latex/kvoptions/kvoptions.sty) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pd1enc.def) (/usr/share/texlive/texmf-dist/tex/generic/intcalc/intcalc.sty) (/usr/share/texlive/texmf-dist/tex/generic/etexcmds/etexcmds.sty) (/usr/share/texlive/texmf-dist/tex/latex/url/url.sty) (/usr/share/texlive/texmf-dist/tex/generic/bitset/bitset.sty (/usr/share/texlive/texmf-dist/tex/generic/bigintcalc/bigintcalc.sty)) (/usr/share/texlive/texmf-dist/tex/latex/base/atbegshi-ltx.sty)) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/hdvips.def (/usr/share/texlive/texmf-dist/tex/latex/hyperref/pdfmark.def (/usr/share/texlive/texmf-dist/tex/latex/rerunfilecheck/rerunfilecheck.sty (/usr/share/texlive/texmf-dist/tex/latex/base/atveryend-ltx.sty) (/usr/share/texlive/texmf-dist/tex/generic/uniquecounter/uniquecounter.sty)))) (./hyphenation.tex) (./extensions.tex) (/usr/share/texlive/texmf-dist/tex/latex/l3backend/l3backend-dvips.def) (./manual.aux) (/usr/share/texlive/texmf-dist/tex/latex/hyperref/nameref.sty (/usr/share/texlive/texmf-dist/tex/latex/refcount/refcount.sty) (/usr/share/texlive/texmf-dist/tex/generic/gettitlestring/gettitlestring.sty)) (./manual.out) (./manual.out) [1] Underfull \hbox (badness 10000) in paragraph at lines 42--49 Underfull \hbox (badness 10000) in paragraph at lines 42--49 Underfull \hbox (badness 10000) in paragraph at lines 42--49 \OT1/cmr/m/n/10 This man-ual is li-censed un-der the GNU Gen-eral Pub-lic Li-ce nse Underfull \hbox (badness 4279) in paragraph at lines 42--49 \OT1/cmr/m/n/10 ver-sion 2. More in-for-ma-tion about this li-cense can be foun d at [2] (./manual.toc [3] [4] [5] [6] [7] [8]) [9] [10] [11] [12] Chapter 1. (./commandline.tex [13] Overfull \hbox (1.64569pt too wide) in paragraph at lines 46--46 []\OT1/cmtt/m/n/7 % Any relation to real weather is purely coincidental.[] Overfull \hbox (20.43309pt too wide) in paragraph at lines 39--54 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 56--70 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 72--87 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 89--104 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 106--120 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 122--141 [] Underfull \vbox (badness 1616) has occurred while \output is active [14] Overfull \hbox (16.8051pt too wide) in paragraph at lines 155--156 \OT1/cmtt/m/n/10 converters.CSVLoader\OT1/cmr/m/n/10 , which can be used to im- port C45 datasets and comma/tab- [15] Overfull \hbox (63.24817pt too wide) in paragraph at lines 166--167 \OT1/cmr/m/n/10 Any learn-ing al-go-rithm in WEKA is de-rived from the ab-strac t \OT1/cmtt/m/n/10 weka.classifiers.Classifier [16] [17] [18] Overfull \hbox (2.46945pt too wide) in paragraph at lines 375--376 []\OT1/cmtt/m/n/10 meta.ClassificationViaRegression -W functions.LinearRegressi on [19] Overfull \hbox (20.43309pt too wide) in paragraph at lines 391--418 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 420--435 [] Overfull \hbox (20.43309pt too wide) in paragraph at lines 437--472 [] Underfull \vbox (badness 10000) has occurred while \output is active [20] Overfull \hbox (20.43309pt too wide) in paragraph at lines 474--511 [] [21] Overfull \hbox (0.61818pt too wide) in paragraph at lines 522--523 []\OT1/cmr/m/n/10 The \OT1/cmr/m/it/10 F-Measure \OT1/cmr/m/n/10 is sim-ply 2*P re-ci-sion*Recall/(Precision+Recall), a com-bined Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 0 diaporthe-stem-canker 0.9999672587892333 diaporthe-stem-can ker[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 1 diaporthe-stem-canker 0.9999992614503429 diaporthe-stem-can ker[] Overfull \hbox (6.6621pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 2 diaporthe-stem-canker 0.999998948559035 diaporthe-stem-cank er[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 3 diaporthe-stem-canker 0.9999998441238833 diaporthe-stem-can ker[] Overfull \hbox (10.38089pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 4 diaporthe-stem-canker 0.9999989997681132 diaporthe-stem-can ker[] Overfull \hbox (2.9433pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 5 rhizoctonia-root-rot 0.9999999395928124 rhizoctonia-root-ro t[] Overfull \hbox (2.9433pt too wide) in paragraph at lines 547--547 []\OT1/cmtt/m/n/7 7 rhizoctonia-root-rot 0.9999994386283236 rhizoctonia-root-ro t[] Underfull \hbox (badness 1953) in paragraph at lines 551--552 \OT1/cmr/m/n/10 dicted class value, the con-fi- Overfull \hbox (48.88585pt too wide) in paragraph at lines 533--555 [] Overfull \hbox (48.88585pt too wide) in paragraph at lines 557--580 [] Overfull \hbox (26.73993pt too wide) in paragraph at lines 592--593 \OT1/cmr/m/n/10 Dividing by the num-ber of in-stances in the test set, i.e. \OT 1/cmtt/m/n/10 wc -l < soybean-test.preds [22] (./includes/learning_curves.tex Overfull \hbox (67.78633pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.StratifiedRemoveFol ds -N 4 -F 1 -S $run -c last -i ../$f -o $run/t_$f[] Overfull \hbox (78.94272pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.StratifiedRemoveFol ds -N 4 -F 1 -S $run -V -c last -i ../$f -o $run/t0$f[] Overfull \hbox (38.03596pt too wide) in paragraph at lines 21--21 [] \OT1/cmtt/m/n/7 java weka.filters.supervised.instance.Resample -S 0 -Z 83 -c last -i $run/t$nr$f -o $run/t$nrp1$f[] [23]) Overfull \hbox (82.66151pt too wide) in paragraph at lines 663--663 [] \OT1/cmtt/m/n/7 -M "weka.classifiers.meta.ClassificationViaRegression -W weka.classifiers.functions.LinearRegression -- -S 1" \[] ) [24] [25] [26] Chapter 2. (./launching.tex [27] Overfull \hbox (9.861pt too wide) in paragraph at lines 86--87 []\OT1/cmr/bx/n/10 Weka on Source-forge \OT1/cmr/m/n/10 WEKA's project home-pag e on Source-forge.net. [28]) [29] [30] Chapter 3. (./simplecli.tex [31] [32] Overfull \hbox (67.06445pt too wide) in paragraph at lines 92--94 \OT1/cmr/m/n/10 with a dot (Unix/Linux: \OT1/cmtt/m/n/10 ./some/other/path/file \OT1/cmr/m/n/10 ; Win-dows: .$\OMS/cmsy/m/n/10 n$\OT1/cmr/m/n/10 Some$\OMS/cmsy /m/n/10 n$\OT1/cmr/m/n/10 Other$\OMS/cmsy/m/n/10 n$\OT1/cmr/m/n/10 Path$\OMS/cm sy/m/n/10 n$\OT1/cmr/m/n/10 file). ) [33] [34] Chapter 4. (./explorer.tex [35] [36] [37] [38] [39] Underfull \hbox (badness 10000) in paragraph at lines 298--308 [40] [41] [42] [43] [44] [45] [46] [47] [48] Underfull \hbox (badness 10000) in paragraph at lines 657--666 [49] [50]) [51] [52] Chapter 5. (./experimenter.tex [53] [54] Underfull \vbox (badness 1082) has occurred while \output is active [55] [56] [57] [58] [59] Underfull \vbox (badness 10000) has occurred while \output is active [60] [61] [62] Underfull \vbox (badness 7704) has occurred while \output is active [63] [64] [65] Underfull \vbox (badness 10000) has occurred while \output is active [66] Overfull \hbox (74.99634pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Key_Scheme {weka.classifiers.rules.ZeroR,weka.cl assifiers.trees.J48}[] Overfull \hbox (38.24666pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Key_Scheme_version_ID {48055541465867954,-217733 168393644444}[] [67] Overfull \hbox (1.49698pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 @attribute Summary {'Number of leaves: 3\nSize of the tree: 5\n',[] Overfull \hbox (48.74657pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 iris,1,weka.classifiers.rules.ZeroR,,48055541465867954,2005 1221.033,99,51,[] Overfull \hbox (69.74638pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 17,34,0,33.333333,66.666667,0,0,0.444444,0.471405,100,100,8 0.833088,80.833088,[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 409--409 [] \OT1/cmtt/m/n/10 0,1.584963,1.584963,0,0,0,0,1,17,1,34,0,0,0,0,0.333333,1,0. 5,0.5,0,0,?,?,?,?[] [68] [69] Underfull \vbox (badness 10000) has occurred while \output is active [70] Underfull \vbox (badness 10000) has occurred while \output is active [71] [72] [73] Overfull \hbox (38.24666pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 ClassifierSplitEvaluator: weka.classifiers.trees.J48 -C 0.25 -M 2(version[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 Correctly Classified Instances 47 92. 1569 %[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 536--536 []\OT1/cmtt/m/n/10 Incorrectly Classified Instances 4 7. 8431 %[] [74] [75] [76] Overfull \hbox (0.2135pt too wide) in paragraph at lines 584--585 []\OT1/cmr/m/n/10 As with the other Re-sult-Pro-duc-ers, ad-di-tional schemes c an be de-fined. When Underfull \vbox (badness 10000) has occurred while \output is active [77] Underfull \vbox (badness 10000) has occurred while \output is active [78] [79] Underfull \hbox (badness 10000) in paragraph at lines 605--610 Overfull \hbox (34.37631pt too wide) in paragraph at lines 613--614 [] [80] [81] Overfull \hbox (8.24261pt too wide) in paragraph at lines 656--657 [] [82] Overfull \hbox (17.30408pt too wide) in paragraph at lines 686--687 []\OT1/cmr/m/n/10 Additional jar archives, i.e., JDBC drivers, are stored in \O T1/cmtt/m/n/10 /home/johndoe/jars\OT1/cmr/m/n/10 . [83] Overfull \hbox (12.8892pt too wide) in paragraph at lines 737--738 []\OT1/cmr/m/n/10 Create a script, called \OT1/cmtt/m/n/10 /home/johndoe/remote []engine/startRemoteEngine\OT1/cmr/m/n/10 , Overfull \hbox (22.24724pt too wide) in paragraph at lines 745--745 [] \OT1/cmtt/m/n/10 -classpath /home/johndoe/jars/hsqldb.jar:remoteEngine.jar \[] Overfull \hbox (16.99728pt too wide) in paragraph at lines 753--753 [] \OT1/cmtt/m/n/10 -classpath /home/johndoe/jars/mysql.jar:remoteEngine.jar \[] [84] Overfull \hbox (75.70413pt too wide) in paragraph at lines 778--779 []\OT1/cmr/m/n/10 Edit this file and change the "\OT1/cmtt/m/n/9 jdbcURL=jdbc:h sqldb:hsql://server[]name/database[]name\OT1/cmr/m/n/9 " Overfull \hbox (11.41405pt too wide) in paragraph at lines 778--779 \OT1/cmr/m/n/9 server (e.g., \OT1/cmtt/m/n/9 jdbcURL=jdbc:hsqldb:hsql://dodo.co mpany.com/experiment\OT1/cmr/m/n/9 ). Overfull \hbox (89.44553pt too wide) in paragraph at lines 785--785 [] \OT1/cmtt/m/n/9 -cp /home/johndoe/jars/hsqldb.jar:remoteEngine.jar:/home/j ohndoe/weka/weka.jar \[] Overfull \hbox (70.97919pt too wide) in paragraph at lines 791--792 []\OT1/cmr/m/n/10 Edit this file and change the "\OT1/cmtt/m/n/9 jdbcURL=jdbc:m ysql://server[]name:3306/database[]name\OT1/cmr/m/n/9 " Overfull \hbox (84.72058pt too wide) in paragraph at lines 798--798 [] \OT1/cmtt/m/n/9 -cp /home/johndoe/jars/mysql.jar:remoteEngine.jar:/home/jo hndoe/weka/weka.jar \[] [85] Overfull \hbox (10.74715pt too wide) in paragraph at lines 832--833 []\OT1/cmtt/m/n/10 01:13:19: RemoteExperiment (//blabla.company.com/RemoteEngin e) Overfull \hbox (9.27715pt too wide) in paragraph at lines 832--833 \OT1/cmtt/m/n/10 java.sql.SQLException: Table already exists: EXPERIMENT[]INDEX Overfull \hbox (2.55719pt too wide) in paragraph at lines 832--833 \OT1/cmtt/m/n/10 LONGVARCHAR, Experiment[]setup LONGVARCHAR, Result[]table INT )] Overfull \hbox (5.4972pt too wide) in paragraph at lines 834--835 \OT1/cmtt/m/n/10 (//blabla.company.com/RemoteEngine) (sub)experiment (datataset Overfull \hbox (5.4972pt too wide) in paragraph at lines 834--835 \OT1/cmtt/m/n/10 vineyard.arff) failed : java.sql.SQLException: Table already Overfull \hbox (11.5871pt too wide) in paragraph at lines 834--835 \OT1/cmtt/m/n/10 Experiment[]index ( Experiment[]type LONGVARCHAR, Experiment[] setup [86] [87] [88] Underfull \vbox (badness 10000) has occurred while \output is active [89] [90] [91] Underfull \vbox (badness 10000) has occurred while \output is active [92] ) [93] [94] Chapter 6. (./knowledgeflow.tex [95] [96] [97] [98] Overfull \hbox (36.43697pt too wide) in paragraph at lines 133--135 []\OT1/cmr/m/it/10 ClassifierPerformanceEvaluator \OT1/cmr/m/n/10 - eval-u-ate the per-for-mance of batch trained/tested Overfull \hbox (35.54247pt too wide) in paragraph at lines 137--139 []\OT1/cmr/m/it/10 ClustererPerformanceEvaluator \OT1/cmr/m/n/10 - eval-u-ate t he per-for-mance of batch trained/tested [99] [100] [101] [102] Overfull \hbox (11.53027pt too wide) in paragraph at lines 268--269 [] [103] [104] Overfull \hbox (24.88557pt too wide) in paragraph at lines 359--360 [] [105] [106] Overfull \hbox (1.07347pt too wide) in paragraph at lines 435--453 \OT1/cmr/m/n/10 mech-a-nism. Plu-g-ins are in-stalled in a di-rec-tory called [ ][]\OT1/cmtt/m/n/10 .knowledgeFlow/plugins Overfull \hbox (69.74638pt too wide) in paragraph at lines 475--475 []\OT1/cmtt/m/n/10 cygnus:~ mhall$ jar tvf /Users/mhall/.knowledgeFlow/plugins/ kettle/kettleKF.jar[] Overfull \hbox (38.24666pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 2812 Wed Feb 20 14:01:20 NZDT 2008 weka/gui/beans/icons/Ke ttleInput.gif[] Overfull \hbox (85.49625pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 2812 Wed Feb 20 14:01:18 NZDT 2008 weka/gui/beans/icons/Ke ttleInput_animated.gif[] Overfull \hbox (17.24684pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 1839 Wed Feb 20 13:59:08 NZDT 2008 weka/gui/beans/KettleIn put.class[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 475--475 [] \OT1/cmtt/m/n/10 174 Tue Feb 19 15:27:24 NZDT 2008 weka/gui/beans/KettleIn putBeanInfo.class[] Overfull \hbox (48.74657pt too wide) in paragraph at lines 475--475 []\OT1/cmtt/m/n/10 cygnus:~ mhall$ more /Users/mhall/.knowledgeFlow/plugins/ket tle/Beans.props[] ) [107] [108] Chapter 7. (./arffviewer.tex [109] [110] [111] [112] ) [113] [114] Chapter 8. (./bayesnet.tex [115] [116] Underfull \vbox (badness 2103) has occurred while \output is active [117] Overfull \hbox (13.24905pt too wide) in paragraph at lines 180--185 \OT1/cmr/m/n/10 fer-ent from the ADTree clas-si-fier al-go-rithm from \OT1/cmtt /m/n/10 weka.classifiers.tree.ADTree\OT1/cmr/m/n/10 . [118] [119] [120] Underfull \hbox (badness 10000) in paragraph at lines 331--336 [121] Underfull \hbox (badness 10000) in paragraph at lines 352--356 Underfull \hbox (badness 10000) in paragraph at lines 361--376 [122] Overfull \hbox (38.44424pt too wide) has occurred while \output is active \OT1/cmr/m/sl/10 8.3. CONDITIONAL INDEPENDENCE TEST BASED STRUCTURE LEARNING \ OT1/cmr/m/n/10 123 [123] Overfull \hbox (106.49606pt too wide) in paragraph at lines 426--426 [] \OT1/cmtt/m/n/10 Rule 5: if no edges are directed then take a rand om one (first we can find)[] Underfull \hbox (badness 10000) in paragraph at lines 434--442 [124] Underfull \vbox (badness 1867) has occurred while \output is active [125] [126] [127] Overfull \hbox (28.27066pt too wide) in paragraph at lines 597--597 [] \OT1/cmtt/m/n/9 Sets test file. If missing, a cross-validation will b e performed on the[] [128] Overfull \hbox (14.09583pt too wide) in paragraph at lines 597--597 [] \OT1/cmtt/m/n/9 Retrieves the options from the XML-data instead of th e command line.[] [129] Overfull \hbox (57.99673pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 Use tournament selection (true) or maximum subpopul atin (false).[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 644--644 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 678--678 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 678--678 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 678--678 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [130] Overfull \hbox (42.24687pt too wide) in paragraph at lines 699--699 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 699--699 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 699--699 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 720--720 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 720--720 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 720--720 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [131] Overfull \hbox (42.24687pt too wide) in paragraph at lines 738--738 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 738--738 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 738--738 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 764--764 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 764--764 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 764--764 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 774--774 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 774--774 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 774--774 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [132] Overfull \hbox (42.24687pt too wide) in paragraph at lines 784--784 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 784--784 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 784--784 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 When determining whether an edge exists a search is performed[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 for a set Z that separates the nodes. MaxCardinalit y determines[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 the maximum size of the set Z. This greatly influen ces the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 799--799 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 Use tournament selection (true) or maximum subpopul atin (false).[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] [133] Overfull \hbox (31.74696pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 829--829 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 849--849 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 869--869 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [134] Overfull \hbox (42.24687pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 893--893 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 914--914 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] [135] Overfull \hbox (42.24687pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 943--943 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (42.24687pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 Applies a Markov Blanket correction to the network structure,[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 after a network structure is learned. This ensures that all[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 956--956 [] \OT1/cmtt/m/n/10 nodes in the network are part of the Markov blanket of the[] Overfull \hbox (10.74715pt too wide) in paragraph at lines 961--961 [] \OT1/cmtt/m/n/10 Name of file containing network structure in BIF fo rmat[] [136] [137] Overfull \hbox (641.9914pt too wide) in paragraph at lines 1043--1043 []\OT1/cmtt/m/n/10 Scheme: weka.classifiers.bayes.BayesNet -D -B iris.xml -Q weka.classifiers.bayes.net.search.local.K2 -- -P 2 -S BAYES -E weka.classif iers.bayes.net.estimate.SimpleEstimator -- -A 0.5[] Overfull \hbox (106.49606pt too wide) in paragraph at lines 1061--1061 []\OT1/cmtt/m/n/10 Relation: iris-weka.filters.unsupervised.attribute.Discr etize-B2-M-1.0-Rfirst-last[] [138] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1123--1123 []\OT1/cmtt/m/n/10 Correctly Classified Instances 116 77. 3333 %[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1123--1123 []\OT1/cmtt/m/n/10 Incorrectly Classified Instances 34 22. 6667 %[] [139] [140] Underfull \hbox (badness 10000) in paragraph at lines 1181--1191 [141] Overfull \hbox (109.99007pt too wide) in paragraph at lines 1199--1200 [] Underfull \vbox (badness 4569) has occurred while \output is active [142] Overfull \hbox (31.52597pt too wide) in paragraph at lines 1232--1244 \OT1/cmr/m/n/10 vari-ables are dis-cretized us-ing the \OT1/cmtt/m/n/10 weka.fi lters.supervised.attribute.Discretize Underfull \vbox (badness 10000) has occurred while \output is active [143] [144] Underfull \hbox (badness 10000) in paragraph at lines 1298--1308 Overfull \hbox (5.15332pt too wide) in paragraph at lines 1316--1319 []\OT1/cmr/m/n/10 The Gen-er-ate Net-work menu al-lows gen-er-a-tion of a com-p lete ran-dom Bayesian [145] [146] Overfull \hbox (17.96149pt too wide) in paragraph at lines 1375--1376 [] Underfull \vbox (badness 10000) has occurred while \output is active [147] Overfull \hbox (11.45515pt too wide) in paragraph at lines 1409--1410 [] [148] [149] [150] Underfull \vbox (badness 1675) has occurred while \output is active [151] [152] [153] Overfull \hbox (76.10909pt too wide) in paragraph at lines 1570--1576 []\OT1/cmr/m/n/10 Create a class that de-rives from \OT1/cmtt/m/n/10 weka.class ifiers.bayes.net.search.SearchAlgorithm\OT1/cmr/m/n/10 . Overfull \hbox (6.74959pt too wide) in paragraph at lines 1570--1576 \OT1/cmr/m/n/10 validation based, you prob-a-bly want to de-rive from \OT1/cmtt /m/n/10 ScoreSearchAlgorithm\OT1/cmr/m/n/10 , Overfull \hbox (56.55356pt too wide) in paragraph at lines 1570--1576 \OT1/cmtt/m/n/10 CISearchAlgorithm \OT1/cmr/m/n/10 or \OT1/cmtt/m/n/10 CVSearch Algorithm \OT1/cmr/m/n/10 in-stead of de-riv-ing from \OT1/cmtt/m/n/10 SearchAl gorithm Overfull \hbox (29.2748pt too wide) in paragraph at lines 1577--1582 \OT1/cmtt/m/n/10 public void buildStructure(BayesNet bayesNet, Instances instan ces)\OT1/cmr/m/n/10 . Overfull \hbox (6.05424pt too wide) in paragraph at lines 1577--1582 \OT1/cmr/m/n/10 You can ac-cess the par-entsets us-ing \OT1/cmtt/m/n/10 bayesNe t.getParentSet(iAttribute) Overfull \hbox (10.74715pt too wide) in paragraph at lines 1583--1587 \OT1/cmtt/m/n/10 bayesNet.getParentSet(iAttribute).AddParent(iParent, instances ) Overfull \hbox (36.44255pt too wide) in paragraph at lines 1588--1596 []\OT1/cmr/m/n/10 Alternatively, im-ple-ment \OT1/cmtt/m/n/10 public void searc h(BayesNet bayesNet, Instances Overfull \hbox (2.57175pt too wide) in paragraph at lines 1617--1621 \OT1/cmtt/m/n/10 weka.classifiers.bayes.net.estimate.BayesNetEstimator\OT1/cmr/ m/n/10 . Let's say Overfull \hbox (29.2748pt too wide) in paragraph at lines 1622--1627 \OT1/cmtt/m/n/10 public void updateClassifier(BayesNet bayesNet, Instance insta nce)\OT1/cmr/m/n/10 , Overfull \hbox (31.74696pt too wide) in paragraph at lines 1622--1627 \OT1/cmtt/m/n/10 public double[] distributionForInstance(BayesNet bayesNet, Ins tance [154] Overfull \hbox (7.02576pt too wide) in paragraph at lines 1644--1648 \OT1/cmr/m/n/10 Use the class \OT1/cmtt/m/n/10 weka.filters.unsupervised.attrib ute.Discretize \OT1/cmr/m/n/10 to dis-cretize Overfull \hbox (27.74675pt too wide) in paragraph at lines 1644--1648 \OT1/cmtt/m/n/10 java weka.filters.unsupervised.attribute.Discretize -B 3 -i in file.arff Overfull \hbox (1.49698pt too wide) in paragraph at lines 1655--1659 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -B -N 10 -A 9 -C Overfull \hbox (1.49698pt too wide) in paragraph at lines 1661--1665 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -N 15 -A 20 -C 3 Overfull \hbox (22.4968pt too wide) in paragraph at lines 1667--1671 \OT1/cmtt/m/n/10 java weka.classifiers.bayes.net.BayesNetGenerator -F alarm.xml -M 1000 [155] [156] Overfull \hbox (5.66734pt too wide) in paragraph at lines 1731--1735 []\OT1/cmr/m/n/10 Only leave-one-out, k-fold and cu-mu-la-tive cross-validation are im-ple-mented. Overfull \hbox (8.08392pt too wide) in paragraph at lines 1731--1735 \OT1/cmr/m/n/10 These im-ple-men-ta-tions can be made more ef-fi-cient and othe r cross-validation ) [157] [158] [159] [160] Chapter 9. (./arff.tex Overfull \hbox (6.74693pt too wide) in paragraph at lines 41--41 [] \OT1/cmtt/m/n/10 % (b) Donor: Michael Marshall (MARSHALL%PLU@io.arc.na sa.gov)[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 41--41 [] \OT1/cmtt/m/n/10 @ATTRIBUTE class {Iris-setosa,Iris-versicolor,Iris- virginica}[] [161] (/usr/share/texlive/texmf-dist/tex/latex/base/ts1cmtt.fd) [162] Overfull \hbox (2.27603pt too wide) in paragraph at lines 116--117 \OT1/cmr/m/n/10 pos-si-ble val-ues: $\OML/cmm/m/it/10 <$\OT1/cmtt/m/n/10 nomina l-name1$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , $\OML/cmm/m/it/10 <$\OT1/cmtt/m/n /10 nominal-name2$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , $\OML/cmm/m/it/10 <$\OT 1/cmtt/m/n/10 nominal-name3$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 , [163] [164] [165]) [166] Chapter 10. (./xrff.tex [167] Overfull \hbox (80.24629pt too wide) in paragraph at lines 127--127 [] \OT1/cmtt/m/n/10 [] [168] [169] [170]) [171] [172] Chapter 11. (./converters.tex [173] Overfull \hbox (10.74715pt too wide) in paragraph at lines 70--70 [] \OT1/cmtt/m/n/10 java weka.core.converters.CSVSaver -i iris.arff -o iris .csv[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 99--99 [] \OT1/cmtt/m/n/10 java weka.core.converters.DatabaseLoader -Q "select * fro m employee"[] [174] Overfull \hbox (15.9971pt too wide) in paragraph at lines 104--104 [] \OT1/cmtt/m/n/10 java weka.core.converters.DatabaseSaver -i iris.arff -T iris[] ) [175] [176] Chapter 12. (./stemmers.tex Overfull \hbox (68.33246pt too wide) in paragraph at lines 29--30 \OT1/cmr/m/n/10 Weka con-tains a wrap-per class for the Snow-ball (home-page: [ ][][][]) [177] Overfull \hbox (46.33209pt too wide) in paragraph at lines 49--50 []\OT1/cmr/m/n/10 within the String-ToWord-Vec-tor (pack-age \OT1/cmtt/m/n/10 w eka.filters.unsupervised.attribute\OT1/cmr/m/n/10 ) Overfull \hbox (4.85867pt too wide) in paragraph at lines 73--74 \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 GenericObjectEditor.props\OT1/cmr/m/n/10 / \OT1/cmtt/m/n/10 GenericPropertiesCreator.props \OT1/cmr/m/n/10 file ) [178] Chapter 13. (./databases.tex Overfull \hbox (9.77429pt too wide) in paragraph at lines 37--38 []\OT1/cmtt/m/n/10 DatabaseUtils.props.mssqlserver2005 \OT1/cmr/m/n/10 - MS SQL Server 2005 ($\OML/cmm/m/it/10 >\OT1/cmr/m/n/10 =$3.4.11, Overfull \hbox (9.10817pt too wide) in paragraph at lines 39--41 []\OT1/cmtt/m/n/10 DatabaseUtils.props.odbc \OT1/cmr/m/n/10 - ODBC ac-cess via Sun's ODBC/JDBC bridge, Underfull \hbox (badness 10000) in paragraph at lines 46--47 Underfull \hbox (badness 10000) in paragraph at lines 48--49 [179] [180] Overfull \hbox (89.10794pt too wide) in paragraph at lines 103--108 \OT1/cmtt/m/n/10 jdbc:postgresql://server.my.domain:5432/MyDatabase?user=$\OML/ cmm/m/it/10 <$\OT1/cmtt/m/n/10 ...$\OML/cmm/m/it/10 >$\OT1/cmtt/m/n/10 &passwor d=$\OML/cmm/m/it/10 <$\OT1/cmtt/m/n/10 ...$\OML/cmm/m/it/10 >$ Underfull \vbox (badness 3679) has occurred while \output is active [181] [182] Overfull \hbox (27.9972pt too wide) in paragraph at lines 183--185 [][][][] Overfull \hbox (0.8047pt too wide) in paragraph at lines 201--202 \OT1/cmr/m/n/10 com-mand \OT1/cmtt/m/n/10 java weka.core.SystemInfo \OT1/cmr/m/ n/10 and check whether the prop- ) [183] [184] Chapter 14. (./windows_databases.tex [185] [186]) [187] [188] [189] [190] Chapter 15. (./research.tex Overfull \hbox (31.02701pt too wide) in paragraph at lines 32--33 \OT1/cmr/m/n/10 ter-face it is now easy to ex-tract all the pa-per ref-er-ences via \OT1/cmtt/m/n/10 weka.core.ClassDiscovery [191] (./includes/get_wekatechinfo.tex [192] Overfull \hbox (90.0991pt too wide) in paragraph at lines 124--124 []\OT1/cmtt/m/n/7 TECHINFOHANDLERS=`$JAVA weka.core.ClassDiscovery $TECHINFOHAN DLER $PACKAGES | grep "\. weka" | sed s/".*weka"/weka/g`[] )) [193] [194] Chapter 16. (./using_api.tex Underfull \hbox (badness 10000) in paragraph at lines 35--40 [195] Overfull \hbox (3.8326pt too wide) in paragraph at lines 104--113 \OT1/cmr/m/n/10 support-vector ma-chine clas-si-fier \OT1/cmr/m/it/10 SMO \OT1/ cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 weka.classifiers.functions\OT1/cmr/m/n/10 ) [196] Overfull \hbox (8.05441pt too wide) in paragraph at lines 125--130 \OT1/cmr/m/n/10 method, it is best to have a look at the \OT1/cmtt/m/n/10 setOp tions(String[]) \OT1/cmr/m/n/10 and \OT1/cmtt/m/n/10 getOptions() Overfull \hbox (6.08145pt too wide) in paragraph at lines 140--148 []\OT1/cmr/m/n/10 A \OT1/cmtt/m/n/10 SelectedTag \OT1/cmr/m/n/10 gets con-struc ted us-ing the ar-ray of all pos-si-ble \OT1/cmtt/m/n/10 weka.core.Tag Overfull \hbox (11.99689pt too wide) in paragraph at lines 156--156 [] \OT1/cmtt/m/n/10 setEvaluation(new SelectedTag(EVALUATION_CC, TAGS_EVALU ATION));[] [197] Overfull \hbox (1.93398pt too wide) in paragraph at lines 178--183 \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 attribute(int) \OT1/cmr/m/n/10 method. Thi s method re-turns \OT1/cmtt/m/n/10 weka.core.Attribute Overfull \hbox (27.33139pt too wide) in paragraph at lines 203--206 []\OT1/cmr/m/n/10 The \OT1/cmtt/m/n/10 DataSource \OT1/cmr/m/n/10 class (in-ner class of the \OT1/cmtt/m/n/10 weka.core.converters.ConverterUtils [198] Underfull \hbox (badness 10000) in paragraph at lines 246--249 Overfull \hbox (3.25064pt too wide) in paragraph at lines 299--301 \OT1/cmr/m/n/10 loaded into mem-ory and then pro-vided row-by-row (``pseudo-inc remental''). [199] [200] Overfull \hbox (21.26906pt too wide) in paragraph at lines 318--321 \OT1/cmr/m/n/10 The class \OT1/cmtt/m/n/10 wekaexamples.core.CreateInstances \O T1/cmr/m/n/10 of the \OT1/cmr/m/it/10 Weka Ex-am-ples \OT1/cmr/m/n/10 collectio n[[]] Overfull \hbox (41.44293pt too wide) in paragraph at lines 332--335 \OT1/cmr/m/n/10 For all of the dif-fer-ent at-tribute types, WEKA uses the same class, \OT1/cmtt/m/n/10 weka.core.Attribute\OT1/cmr/m/n/10 , Overfull \hbox (0.24724pt too wide) in paragraph at lines 351--351 []\OT1/cmtt/m/n/10 Attribute date = new Attribute("name_of_attr", "yyyy-MM-dd" );[] Overfull \hbox (36.99692pt too wide) in paragraph at lines 372--372 []\OT1/cmtt/m/n/10 Attribute string = new Attribute("name_of_attr", (FastVecto r) null);[] Underfull \vbox (badness 10000) has occurred while \output is active [201] Overfull \vbox (28.493pt too high) has occurred while \output is active [202] Overfull \hbox (21.24706pt too wide) in paragraph at lines 390--390 []\OT1/cmtt/m/n/10 Attribute relational = new Attribute("name_of_attr", rel_st ruct);[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 408--408 [] \OT1/cmtt/m/n/10 Instances dataset = new Instances("Test-dataset", attribu tes, 0);[] Overfull \hbox (9.12917pt too wide) in paragraph at lines 418--421 \OT1/cmr/m/n/10 to it, row by row. There are ba-si-cally two con-struc-tors of the \OT1/cmtt/m/n/10 weka.core.Instance Overfull \hbox (12.8311pt too wide) in paragraph at lines 422--426 []\OT1/cmtt/m/n/10 Instance(double weight, double[] attValues) \OT1/cmr/m/n/10 -- gen-er-ates an \OT1/cmtt/m/n/10 Instance Overfull \vbox (34.59024pt too high) has occurred while \output is active [203] Overfull \hbox (21.24706pt too wide) in paragraph at lines 468--468 []\OT1/cmtt/m/n/10 values[3] = data.attribute(3).addStringValue("This is a str ing");[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 480--480 []\OT1/cmtt/m/n/10 Instances dataRel = new Instances(data.attribute(4).relatio n(),0);[] [204] Overfull \hbox (24.165pt too wide) in paragraph at lines 501--504 \OT1/cmr/m/n/10 Simply gen-er-at-ing an ARFF file is achieved us-ing the static \OT1/cmtt/m/n/10 DataGenerator.makeData Overfull \hbox (28.96251pt too wide) in paragraph at lines 501--504 \OT1/cmr/m/n/10 method. In or-der to write to a file, the gen-er-a-tor needs to have a \OT1/cmtt/m/n/10 java.io.PrintWriter Overfull \hbox (6.74693pt too wide) in paragraph at lines 520--520 [] \OT1/cmtt/m/n/10 new java.io.BufferedWriter(new java.io.FileWriter("rdg1.ar ff")));[] [205] Overfull \hbox (20.5538pt too wide) in paragraph at lines 567--570 []\OT1/cmr/m/n/10 Using the \OT1/cmtt/m/n/10 Randomize \OT1/cmr/m/n/10 fil-ter (pack-age \OT1/cmtt/m/n/10 weka.filters.unsupervised.instance\OT1/cmr/m/n/10 ). [206] [207] Overfull \hbox (22.4968pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 remove.setInputFormat(data); // inform filter abo ut dataset[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 // **AFTER** setting options[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 671--671 [] \OT1/cmtt/m/n/10 Instances newData = Filter.useFilter(data, remove); // ap ply filter[] Overfull \hbox (18.08133pt too wide) in paragraph at lines 672--677 \OT1/cmr/m/n/10 A com-mon trap to fall into is set-ting op-tions \OT1/cmr/bx/n/ 10 af-ter \OT1/cmr/m/n/10 the \OT1/cmtt/m/n/10 setInputFormat(Instances) Overfull \hbox (5.97029pt too wide) in paragraph at lines 689--693 \OT1/cmr/m/n/10 with the \OT1/cmtt/m/n/10 Standardize \OT1/cmr/m/n/10 fil-ter ( pack-age \OT1/cmtt/m/n/10 weka.filters.unsupervised.attribute\OT1/cmr/m/n/10 ): [208] Overfull \hbox (17.5531pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 like \OT1/cmtt/m/n/10 FilteredClassifier \OT1/cmr/m/n/10 (pack- age \OT1/cmtt/m/n/10 weka.classifiers.meta\OT1/cmr/m/n/10 ), \OT1/cmtt/m/n/10 F ilteredClusterer Overfull \hbox (12.72011pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 weka.clusterers\OT1/cmr/m/n/10 ), \O T1/cmtt/m/n/10 FilteredAssociator \OT1/cmr/m/n/10 (pack-age \OT1/cmtt/m/n/10 we ka.associations\OT1/cmr/m/n/10 ) Overfull \hbox (27.16393pt too wide) in paragraph at lines 710--721 \OT1/cmr/m/n/10 and \OT1/cmtt/m/n/10 FilteredAttributeEval\OT1/cmr/m/n/10 /\OT1 /cmtt/m/n/10 FilteredSubsetEval \OT1/cmr/m/n/10 (in \OT1/cmtt/m/n/10 weka.attri buteSelection\OT1/cmr/m/n/10 ). [209] Overfull \hbox (20.1095pt too wide) in paragraph at lines 817--824 \OT1/cmr/m/n/10 All in-cre-men-tal clas-si-fiers in WEKA im-ple-ment the in-ter -face \OT1/cmtt/m/n/10 UpdateableClassifier Overfull \hbox (5.91695pt too wide) in paragraph at lines 831--833 []\OT1/cmr/m/it/10 update \OT1/cmr/m/n/10 the model row-by-row, by call-ing the \OT1/cmtt/m/n/10 updateClassifier(Instance) [210] [211] Overfull \hbox (21.05566pt too wide) in paragraph at lines 872--874 \OT1/cmr/m/n/10 The eval-u-a-tion step, in-clud-ing col-lec-tion of statis-tics , is per-formed by the \OT1/cmtt/m/n/10 Evaluation [212] Overfull \hbox (11.99689pt too wide) in paragraph at lines 910--910 [] \OT1/cmtt/m/n/10 System.out.println(eval.toSummaryString("\nResults\n\n", false));[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 940--940 [] \OT1/cmtt/m/n/10 System.out.println(eval.toSummaryString("\nResults\n\n", false));[] [213] Overfull \hbox (11.55396pt too wide) in paragraph at lines 950--952 []\OT1/cmtt/m/n/10 toClassDetailsString \OT1/cmr/m/n/10 -- out-puts TP/FP rates , pre-ci-sion, re-call, F-measure, Overfull \hbox (0.47084pt too wide) in paragraph at lines 952--954 []\OT1/cmtt/m/n/10 toCumulativeMarginDistributionString \OT1/cmr/m/n/10 -- out- puts the cu-mu-la-tive mar- [214] Overfull \hbox (27.74675pt too wide) in paragraph at lines 1017--1017 [] \OT1/cmtt/m/n/10 Instances unlabeled = DataSource.read("/some/where/unlabe led.arff");[] Overfull \hbox (11.99689pt too wide) in paragraph at lines 1017--1017 [] \OT1/cmtt/m/n/10 double clsLabel = tree.classifyInstance(unlabeled.insta nce(i));[] Overfull \hbox (6.74693pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 double[] dist = cls.distributionForInstance(test.instan ce(i));[] Overfull \hbox (53.99652pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 System.out.print(test.instance(i).toString(test.classIn dex()) + " - ");[] Overfull \hbox (27.74675pt too wide) in paragraph at lines 1048--1048 [] \OT1/cmtt/m/n/10 System.out.print(test.classAttribute().value((int) pred ) + " - ");[] [215] Overfull \hbox (12.30984pt too wide) in paragraph at lines 1083--1087 []\OT1/cmr/m/it/10 build the model \OT1/cmr/m/n/10 with train-ing data -- call- ing the \OT1/cmtt/m/n/10 buildClusterer(Instances) Overfull \hbox (0.94284pt too wide) in paragraph at lines 1104--1108 \OT1/cmr/m/n/10 Incremental clus-ter-ers in WEKA im-ple-ment the in-ter-face \O T1/cmtt/m/n/10 UpdateableClusterer Overfull \hbox (13.7781pt too wide) in paragraph at lines 1112--1114 []\OT1/cmr/m/it/10 update \OT1/cmr/m/n/10 the model row-by-row by call-ing the the \OT1/cmtt/m/n/10 updateClusterer(Instance) Underfull \vbox (badness 10000) has occurred while \output is active [216] Overfull \vbox (79.67348pt too high) has occurred while \output is active [217] [218] Overfull \hbox (59.24648pt too wide) in paragraph at lines 1160--1160 [] \OT1/cmtt/m/n/10 System.out.println(ClusterEvaluation.evaluateClusterer(new EM(), options));[] Overfull \hbox (53.99652pt too wide) in paragraph at lines 1195--1195 [] \OT1/cmtt/m/n/10 DensityBasedClusterer clusterer = new ... // the clust erer to evaluate[] Overfull \hbox (64.49643pt too wide) in paragraph at lines 1195--1195 [] \OT1/cmtt/m/n/10 new Random(1)); // and rando m number generator[] [219] Overfull \hbox (0.24724pt too wide) in paragraph at lines 1222--1222 [] \OT1/cmtt/m/n/10 filter.setAttributeIndices("" + (data.classIndex() + 1) );[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 1222--1222 [] \OT1/cmtt/m/n/10 Instances dataClusterer = Filter.useFilter(data, filter );[] [220] Overfull \hbox (3.69315pt too wide) in paragraph at lines 1247--1249 []\OT1/cmtt/m/n/10 clusterInstance(Instance) \OT1/cmr/m/n/10 -- de-ter-mines th e clus-ter the \OT1/cmtt/m/n/10 Instance \OT1/cmr/m/n/10 would Overfull \hbox (6.74693pt too wide) in paragraph at lines 1276--1276 [] \OT1/cmtt/m/n/10 int cluster = clusterer.clusterInstance(dataset2.instan ce(i));[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 1276--1276 [] \OT1/cmtt/m/n/10 double[] dist = clusterer.distributionForInstance(datas et2.instance(i));[] [221] Underfull \hbox (badness 10000) in paragraph at lines 1285--1290 Overfull \hbox (3.35565pt too wide) in paragraph at lines 1293--1298 []\OT1/cmr/m/it/10 single at-tribute eval-u-a-tors \OT1/cmr/m/n/10 -- per-form eval-u-a-tions on sin-gle at-tributes. These [222] Overfull \hbox (64.49643pt too wide) in paragraph at lines 1378--1378 [] \OT1/cmtt/m/n/10 AttributeSelectedClassifier classifier = new AttributeSel ectedClassifier();[] Overfull \hbox (22.4968pt too wide) in paragraph at lines 1378--1378 [] \OT1/cmtt/m/n/10 evaluation.crossValidateModel(classifier, data, 10, new R andom(1));[] [223] Overfull \hbox (27.4348pt too wide) in paragraph at lines 1383--1388 \OT1/cmr/m/n/10 train-ing a clas-si-fier, then the fil-ter ap-proach is the rig ht one. The \OT1/cmtt/m/n/10 AttributeSelection [224] [225] Overfull \hbox (50.86061pt too wide) in paragraph at lines 1465--1470 \OT1/cmr/m/n/10 ing the data or use an ex-plicit con-verter (all savers are lo- cated in the \OT1/cmtt/m/n/10 weka.core.converters Overfull \hbox (22.94261pt too wide) in paragraph at lines 1471--1474 []\OT1/cmr/m/n/10 Use the \OT1/cmtt/m/n/10 DataSink \OT1/cmr/m/n/10 class (in-n er class of \OT1/cmtt/m/n/10 weka.core.converters.ConverterUtils\OT1/cmr/m/n/10 ), [226] [227] Overfull \hbox (34.02615pt too wide) in paragraph at lines 1575--1578 \OT1/cmr/m/n/10 tions, us-ing the \OT1/cmtt/m/n/10 ThresholdCurve \OT1/cmr/m/n/ 10 class (pack-age \OT1/cmtt/m/n/10 weka.classifiers.evaluation\OT1/cmr/m/n/10 ). Overfull \hbox (30.6928pt too wide) in paragraph at lines 1580--1583 \OT1/cmr/m/n/10 in-stance of the \OT1/cmtt/m/n/10 ThresholdVisualizePanel \OT1/ cmr/m/n/10 class (pack-age \OT1/cmtt/m/n/10 weka.gui.visualize\OT1/cmr/m/n/10 ) . Overfull \hbox (5.4972pt too wide) in paragraph at lines 1594--1594 []\OT1/cmtt/m/n/10 Instances curve = tc.getCurve(eval.predictions(), classInde x);[] Overfull \hbox (15.9971pt too wide) in paragraph at lines 1610--1610 [] \OT1/cmtt/m/n/10 Utils.doubleToString(ThresholdCurve.getROCArea(curve),4)+ ")");[] [228] Overfull \hbox (1.49698pt too wide) in paragraph at lines 1665--1665 [] \OT1/cmtt/m/n/10 JFrame jf = new JFrame("Weka Classifier Tree Visualizer: J48");[] [229] [230] [231] Overfull \hbox (17.24684pt too wide) in paragraph at lines 1778--1778 [] \OT1/cmtt/m/n/10 Object o[] = SerializationHelper.readAll("/some/where/j48 .model");[] ) [232] Chapter 17. (./extending.tex [233] (./extending_classifier.tex Underfull \vbox (badness 10000) has occurred while \output is active [234] Overfull \vbox (64.17354pt too high) has occurred while \output is active [235] [236] [237] Overfull \hbox (6.74693pt too wide) in paragraph at lines 192--192 [] \OT1/cmtt/m/n/10 result.addAll(Arrays.asList(super.getOptions())); // sup erclass[] Overfull \hbox (30.47186pt too wide) in paragraph at lines 227--231 \OT1/cmr/m/n/10 re-turns the class prob-a-bil-i-ties ar-ray of the pre-dic-tion for the given \OT1/cmtt/m/n/10 weka.core.Instance [238] Overfull \hbox (42.88777pt too wide) in paragraph at lines 232--243 \OT1/cmr/m/n/10 bel in-dex based on the prob-a-bil-i-ties ar-ray that the \OT1/ cmtt/m/n/10 distributionForInstance(Instance) [239] [240] [241] Underfull \hbox (badness 10000) in paragraph at lines 360--374 Overfull \hbox (0.55939pt too wide) in paragraph at lines 390--397 []\OT1/cmr/m/it/10 multi-instance clas-si-fiers \OT1/cmr/m/n/10 -- in or-der to sig-nal that the spe-cial multi-instance Overfull \hbox (5.27605pt too wide) in paragraph at lines 390--397 \OT1/cmr/m/n/10 instance, \OT1/cmtt/m/n/10 weka.core.MultiInstanceCapabilitiesH andler\OT1/cmr/m/n/10 , which re-turns [242] Overfull \hbox (5.08153pt too wide) in paragraph at lines 441--446 \OT1/cmr/m/n/10 in case of de-scen-dants of the \OT1/cmtt/m/n/10 weka.classifie r.MultipleClassifiersCombiner\OT1/cmr/m/n/10 , Overfull \hbox (14.09583pt too wide) in paragraph at lines 461--461 [] \OT1/cmtt/m/n/9 result.enable(Capability.NOMINAL_CLASS); // only nominal classes allowed[] [243] Overfull \vbox (104.0pt too high) has occurred while \output is active [244] [245] Overfull \hbox (17.24684pt too wide) in paragraph at lines 603--603 [] \OT1/cmtt/m/n/10 weka.core.CheckOptionHandler -W classname [-- additional pa rameters][] Overfull \hbox (59.46141pt too wide) in paragraph at lines 640--645 \OT1/cmr/m/n/10 class. The su-per-class for clas-si-fier unit tests is \OT1/cmt t/m/n/10 weka.classifiers.AbstractClassifierTest\OT1/cmr/m/n/10 . ) [246] (./extending_filter.tex Overfull \hbox (26.02608pt too wide) in paragraph at lines 63--67 \OT1/cmtt/m/n/10 weka.filters.Filter \OT1/cmr/m/n/10 su-per-class does not im-p le-ment the \OT1/cmtt/m/n/10 weka.core.OptionHandler [247] [248] Overfull \hbox (34.38815pt too wide) in paragraph at lines 125--132 \OT1/cmr/m/n/10 de-ter-mine what the out-put for-mat will be (and set if via \O T1/cmtt/m/n/10 setOutputFormat(Instances)\OT1/cmr/m/n/10 ) [249] (./includes/BatchFilter.tex) [250] (./includes/BatchFilter2.tex) [251] (./includes/BatchFilter3.tex) Overfull \vbox (68.45831pt too high) has occurred while \output is active [252] (./includes/StreamFilter.tex) [253] [254] (./includes/SimpleBatch.tex Overfull \hbox (33.25543pt too wide) in paragraph at lines 45--45 [] \OT1/cmtt/m/n/8 return "A simple batch filter that adds an additional a ttribute 'blah' at the end "[] Overfull \hbox (7.75507pt too wide) in paragraph at lines 45--45 [] \OT1/cmtt/m/n/8 result.enable(Capability.NO_CLASS); //// filter doesn't need class to be set//[] ) [255] [256] (./includes/SimpleStream.tex Overfull \hbox (7.75507pt too wide) in paragraph at lines 50--50 [] \OT1/cmtt/m/n/8 result.enable(Capability.NO_CLASS); //// filter doesn't need class to be set//[] ) [257] Overfull \hbox (15.32312pt too wide) in paragraph at lines 319--322 \OT1/cmr/m/n/10 bu-tions into ac-count. Must im-ple-ment the \OT1/cmtt/m/n/10 w eka.filters.SupervisedFilter Overfull \hbox (0.93573pt too wide) in paragraph at lines 336--338 \OT1/cmr/m/n/10 The Javadoc gen-er-a-tion works the same as with clas-si-fiers. See sec-tion ``Javadoc'' [258] Overfull \hbox (17.24684pt too wide) in paragraph at lines 360--360 [] \OT1/cmtt/m/n/10 weka.core.CheckOptionHandler -W classname [-- additional pa rameters][] Overfull \hbox (77.71982pt too wide) in paragraph at lines 386--390 []\OT1/cmr/m/n/10 Here is an ex-am-ple call for \OT1/cmtt/m/n/10 weka.filters.u nsupervised.attribute.ReplaceMissingValues ) [259] (./extending_other_algorithms.tex Overfull \hbox (1.7496pt too wide) in paragraph at lines 36--39 \OT1/cmr/m/n/10 like the \OT1/cmtt/m/n/10 FilteredClusterer \OT1/cmr/m/n/10 tha t fil-ters the data on-the-fly for the base-clusterer. Underfull \hbox (badness 10000) in paragraph at lines 36--39 Overfull \hbox (56.46068pt too wide) in paragraph at lines 50--55 \OT1/cmr/m/n/10 one way or an-other. \OT1/cmtt/m/n/10 RandomizableClusterer\OT1 /cmr/m/n/10 , \OT1/cmtt/m/n/10 RandomizableDensityBasedClusterer [260] Overfull \hbox (3.24855pt too wide) in paragraph at lines 116--118 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.c lusterers.AbstractClustererTest [261] Overfull \hbox (0.3597pt too wide) in paragraph at lines 137--140 \OT1/cmr/m/n/10 The an-ces-tor for all eval-u-a-tors is the \OT1/cmtt/m/n/10 we ka.attributeSelection.ASEvaluation Underfull \hbox (badness 10000) in paragraph at lines 137--140 [262] Overfull \hbox (10.55435pt too wide) in paragraph at lines 189--192 \OT1/cmr/m/n/10 The an-ces-tor for all search al-go-rithms is the \OT1/cmtt/m/n /10 weka.attributeSelection.ASSearch Underfull \hbox (badness 10000) in paragraph at lines 189--192 Overfull \hbox (45.24818pt too wide) in paragraph at lines 216--220 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.a ttributeSelection.AbstractEvaluatorTest [263] Overfull \hbox (5.08264pt too wide) in paragraph at lines 228--235 \OT1/cmr/m/n/10 can also im-ple-ment a meta-associator, de-rived from \OT1/cmtt /m/n/10 SingleAssociatorEnhancer\OT1/cmr/m/n/10 . Overfull \hbox (1.49698pt too wide) in paragraph at lines 258--258 [] \OT1/cmtt/m/n/10 public void buildAssociations(Instances data) throws Excep tion {[] [264] Overfull \hbox (1.49698pt too wide) in paragraph at lines 283--283 [] \OT1/cmtt/m/n/10 AbstractAssociator.runAssociator(new FunkyAssociator(), args);[] Overfull \hbox (1.49698pt too wide) in paragraph at lines 290--290 [] \OT1/cmtt/m/n/10 weka.associations.CheckAssociator -W classname [further op tions][] ) Overfull \hbox (18.99841pt too wide) in paragraph at lines 291--62 \OT1/cmr/m/n/10 For ju-nit tests, you can sub-class the \OT1/cmtt/m/n/10 weka.a ssociations.AbstractAssociatorTest [265] (./extending_explorer.tex Overfull \hbox (11.74733pt too wide) in paragraph at lines 41--44 []\OT1/cmtt/m/n/10 weka.gui.explorer.Explorer.CapabilitiesFilterChangeListener Overfull \hbox (18.02759pt too wide) in paragraph at lines 45--47 []\OT1/cmr/m/n/10 adding the class-name of your class to the Tabs prop-erty in the \OT1/cmtt/m/n/10 Explorer.props Overfull \hbox (68.49664pt too wide) in paragraph at lines 85--85 [] \OT1/cmtt/m/n/10 /** sends notifications when the set of working instances gets changed*/[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 85--85 [] \OT1/cmtt/m/n/10 protected PropertyChangeSupport m_Support = new PropertyC hangeSupport(this);[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 return "SQL"; // what's displayed as tab-title, e.g., Classify[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 return "Retrieving data from databases"; // the toolti p of the tab[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 /** ignored, since we "generate" data and not receive it */[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 /** PropertyChangeListener which will be notified of valu e changes. */[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 public void addPropertyChangeListener(PropertyChangeListe ner l) {[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 122--122 [] \OT1/cmtt/m/n/10 public void removePropertyChangeListener(PropertyChangeLi stener l) {[] [266] Overfull \vbox (91.59024pt too high) has occurred while \output is active [267] Overfull \hbox (31.74696pt too wide) in paragraph at lines 138--138 [] \OT1/cmtt/m/n/10 /** the Load button - makes the data available in the Exp lorer */[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 Instances data = query.retrieveInstances(m_Viewer.g etQuery());[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 // set data in preprocess panel (also notifies of c apabilties changes)[] Overfull \hbox (5.4972pt too wide) in paragraph at lines 171--171 [] \OT1/cmtt/m/n/10 getExplorer().getPreprocessPanel().setInstances(dat a);[] Overfull \vbox (69.0pt too high) has occurred while \output is active [268] [269] Overfull \hbox (68.49664pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 /** sends notifications when the set of working instances gets changed*/[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 221--221 [] \OT1/cmtt/m/n/10 protected PropertyChangeSupport m_Support = new PropertyC hangeSupport(this);[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 return "DataGeneration"; // what's displayed as tab-ti tle, e.g., Classify[] Overfull \hbox (52.74678pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 return "Generating artificial datasets"; // the toolti p of the tab[] Overfull \hbox (0.24724pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 /** ignored, since we "generate" data and not receive it */[] Overfull \hbox (57.99673pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 /** PropertyChangeListener which will be notified of valu e changes. */[] Overfull \hbox (31.74696pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 public void addPropertyChangeListener(PropertyChangeListe ner l) {[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 253--253 [] \OT1/cmtt/m/n/10 public void removePropertyChangeListener(PropertyChangeLi stener l) {[] Overfull \vbox (92.50687pt too high) has occurred while \output is active [270] Overfull \hbox (89.49646pt too wide) in paragraph at lines 269--269 [] \OT1/cmtt/m/n/10 protected GenericObjectEditor m_GeneratorEditor = new Gen ericObjectEditor();[] Overfull \hbox (10.74715pt too wide) in paragraph at lines 269--269 [] \OT1/cmtt/m/n/10 protected JButton m_ButtonGenerate = new JButton("Generat e");[] Overfull \hbox (84.2465pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 DataGenerator generator = (DataGenerator) m_Generator Editor.getValue();[] Overfull \hbox (78.99655pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 String cname = generator.getClass().getName().replace All(".*\\.", "");[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 cmd += " "+Utils.joinOptions(((OptionHandler)genera tor).getOptions());[] Overfull \hbox (26.49701pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 DataGenerator.makeData(generator, generator.getOpti ons());[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 302--302 [] \OT1/cmtt/m/n/10 getExplorer(), "Error generating data:\n" + ex.ge tMessage(),[] Overfull \vbox (48.0pt too high) has occurred while \output is active [271] Overfull \hbox (84.2465pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 Instances data = new Instances(new StringReader(m_O utput.getText()));[] Overfull \hbox (89.49646pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 // set data in preprocess panel (also notifies of c apabilties changes)[] Overfull \hbox (5.4972pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 getExplorer().getPreprocessPanel().setInstances(dat a);[] Overfull \hbox (47.49683pt too wide) in paragraph at lines 333--333 [] \OT1/cmtt/m/n/10 getExplorer(), "Error generating data:\n" + ex.ge tMessage(),[] Overfull \vbox (81.85202pt too high) has occurred while \output is active [272] Overfull \vbox (57.81944pt too high) has occurred while \output is active [273] Overfull \hbox (34.60944pt too wide) in paragraph at lines 418--422 \OT1/cmr/m/n/10 home di-rec-tory) un-der the key \OT1/cmtt/m/n/10 weka.gui.visu alize.plugins.VisualizePlugin\OT1/cmr/m/n/10 . [274] [275] )) [276] Chapter 18. (./technical_documentation.tex Underfull \hbox (badness 10000) in paragraph at lines 21--22 [277] Underfull \hbox (badness 10000) in paragraph at lines 81--82 Underfull \hbox (badness 10000) in paragraph at lines 83--84 Underfull \hbox (badness 10000) in paragraph at lines 85--93 Underfull \hbox (badness 10000) in paragraph at lines 94--95 Underfull \hbox (badness 10000) in paragraph at lines 96--97 Underfull \hbox (badness 10000) in paragraph at lines 98--99 Underfull \hbox (badness 10000) in paragraph at lines 104--105 Underfull \hbox (badness 10000) in paragraph at lines 106--107 Overfull \hbox (95.24629pt too wide) in paragraph at lines 114--115 [][][]\OT1/cmtt/m/n/10 export CLASSPATH=$CLASSPATH:/home/johndoe/jars/mysql-con nector-java-5.1.7-bin.jar Overfull \hbox (95.24629pt too wide) in paragraph at lines 120--121 [][][]\OT1/cmtt/m/n/10 setenv CLASSPATH $CLASSPATH:/home/johndoe/jars/mysql-con nector-java-5.1.7-bin.jar [278] Underfull \hbox (badness 10000) in paragraph at lines 141--143 Underfull \hbox (badness 10000) in paragraph at lines 146--147 Underfull \hbox (badness 10000) in paragraph at lines 148--149 Underfull \hbox (badness 10000) in paragraph at lines 150--151 Underfull \hbox (badness 10000) in paragraph at lines 152--154 Underfull \hbox (badness 10000) in paragraph at lines 163--165 Underfull \hbox (badness 10000) in paragraph at lines 170--176 [279] Overfull \hbox (7.98488pt too wide) in paragraph at lines 177--178 \OT1/cmr/m/n/10 Here's once again how you start the Weka Main-GUI \OT1/cmr/bx/n /10 with \OT1/cmr/m/n/10 your cur-rent [][]\OT1/cmtt/m/n/10 CLASSPATH Overfull \hbox (0.24724pt too wide) in paragraph at lines 181--182 [][]\OT1/cmtt/m/n/10 java -Xmx128m -classpath "%CLASSPATH%;weka.jar" weka.gui.M ain Underfull \hbox (badness 10000) in paragraph at lines 187--188 Underfull \hbox (badness 10000) in paragraph at lines 189--190 Underfull \hbox (badness 10000) in paragraph at lines 210--211 Underfull \hbox (badness 10000) in paragraph at lines 212--213 Underfull \hbox (badness 10000) in paragraph at lines 214--215 Overfull \hbox (37.9968pt too wide) in paragraph at lines 216--217 [][][][][] Underfull \hbox (badness 10000) in paragraph at lines 216--217 Underfull \hbox (badness 10000) in paragraph at lines 219--220 [280] Underfull \hbox (badness 10000) in paragraph at lines 223--224 Overfull \hbox (43.24675pt too wide) in paragraph at lines 225--226 [][][][][] Underfull \hbox (badness 10000) in paragraph at lines 245--246 [281] Overfull \hbox (14.55481pt too wide) in paragraph at lines 265--274 \OT1/cmr/m/n/10 run-time (rather than us-ing only those spec-i-fied in the [][] \OT1/cmtt/m/n/10 GenericObjectEditor.props Underfull \hbox (badness 10000) in paragraph at lines 300--306 [282] Overfull \vbox (24.59024pt too high) has occurred while \output is active [283] Underfull \hbox (badness 10000) in paragraph at lines 375--380 Underfull \hbox (badness 10000) in paragraph at lines 381--382 Underfull \hbox (badness 10000) in paragraph at lines 383--384 Underfull \hbox (badness 10000) in paragraph at lines 385--386 Overfull \hbox (3.66528pt too wide) in paragraph at lines 387--390 \OT1/cmr/m/n/10 Where the [][]\OT1/cmtt/m/n/10 []\OT1/cmr/m/n/10 cor-re-s ponds to a key in the [][]\OT1/cmtt/m/n/10 GenericPropertiesCreator.props Overfull \hbox (64.49643pt too wide) in paragraph at lines 412--412 []\OT1/cmtt/m/n/10 # exclude all ResultListeners that also implement the Result Producer interface[] [284] Underfull \hbox (badness 10000) in paragraph at lines 416--427 Overfull \hbox (53.24666pt too wide) in paragraph at lines 428--429 [][][]\OT1/cmtt/m/n/10 java -classpath "/development:/distribution/weka.jar" we ka.gui.GUIChooser Underfull \hbox (badness 10000) in paragraph at lines 428--429 [285] Underfull \hbox (badness 10000) in paragraph at lines 456--457 [286] [287] Underfull \hbox (badness 10000) in paragraph at lines 493--494 Underfull \hbox (badness 10000) in paragraph at lines 495--496 Underfull \hbox (badness 10000) in paragraph at lines 497--498 Underfull \hbox (badness 10000) in paragraph at lines 520--524 [288] Overfull \hbox (17.24684pt too wide) in paragraph at lines 567--567 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 574--577 Underfull \hbox (badness 10000) in paragraph at lines 577--585 [289] Underfull \hbox (badness 10000) in paragraph at lines 586--592 Overfull \hbox (21.24706pt too wide) in paragraph at lines 600--600 [] \OT1/cmtt/m/n/10 [] Underfull \hbox (badness 10000) in paragraph at lines 606--611 Overfull \hbox (26.49701pt too wide) in paragraph at lines 615--615 [] \OT1/cmtt/m/n/10 [] [290] Overfull \hbox (4.64594pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (4.64594pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (32.9956pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (37.72055pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Overfull \hbox (9.37088pt too wide) in paragraph at lines 661--661 [] \OT1/cmtt/m/n/9 [] Underfull \hbox (badness 10000) in paragraph at lines 663--668 [291] Underfull \hbox (badness 10000) in paragraph at lines 722--723 Underfull \hbox (badness 10000) in paragraph at lines 724--725 [292] Overfull \hbox (43.80186pt too wide) in paragraph at lines 749--750 []\OT1/cmr/m/n/10 The DTD for KOML can be found at [][][][] Underfull \hbox (badness 10000) in paragraph at lines 749--750 Underfull \hbox (badness 10000) in paragraph at lines 751--752 Underfull \hbox (badness 10000) in paragraph at lines 753--754 Overfull \hbox (75.44197pt too wide) in paragraph at lines 756--759 \OT1/cmr/m/n/10 put file (see op-tions of [][]\OT1/cmtt/m/n/10 weka.experiment. Experiment []\OT1/cmr/m/n/10 and [][]\OT1/cmtt/m/n/10 weka.experiment.RemoteExp eriment Underfull \hbox (badness 10000) in paragraph at lines 783--790 Overfull \hbox (3.01225pt too wide) in paragraph at lines 799--805 \OT1/cmr/m/n/10 The GraphVi-su-al-izer ([][]\OT1/cmtt/m/n/10 weka.gui.graphvisu alizer.GraphVisualizer[]\OT1/cmr/m/n/10 ) can save [293] Overfull \hbox (17.24684pt too wide) in paragraph at lines 825--825 [] \OT1/cmtt/m/n/10 [] Overfull \hbox (11.99689pt too wide) in paragraph at lines 825--825 [] \OT1/cmtt/m/n/10 [] ) [294] Chapter 19. (./other_resources.tex Underfull \hbox (badness 10000) in paragraph at lines 51--56 Underfull \hbox (badness 10000) in paragraph at lines 57--58 [295] Underfull \hbox (badness 10000) in paragraph at lines 65--68 Underfull \hbox (badness 10000) in paragraph at lines 91--93 Underfull \hbox (badness 10000) in paragraph at lines 94--95 Underfull \hbox (badness 10000) in paragraph at lines 106--108 Underfull \vbox (badness 1371) has occurred while \output is active [296] Overfull \hbox (5.99707pt too wide) in paragraph at lines 109--110 [][][]\OT1/cmtt/m/n/10 java weka.core.converters.CSVLoader filename.csv > filen ame.arff Underfull \hbox (badness 10000) in paragraph at lines 109--110 Underfull \hbox (badness 10000) in paragraph at lines 112--114 Underfull \hbox (badness 10000) in paragraph at lines 115--116 Underfull \hbox (badness 10000) in paragraph at lines 123--126 Underfull \hbox (badness 10000) in paragraph at lines 127--128 Overfull \hbox (16.19777pt too wide) in paragraph at lines 132--138 \OT1/cmr/m/n/10 Get-ting [][]\OT1/cmtt/m/n/10 java.lang.NoClassDefFoundError [] \OT1/cmr/m/n/10 ex-cep-tions? Most likely your \OT1/cmr/bx/n/10 CLASS- Underfull \hbox (badness 10000) in paragraph at lines 132--138 Underfull \hbox (badness 10000) in paragraph at lines 139--140 Underfull \hbox (badness 10000) in paragraph at lines 141--142 Underfull \hbox (badness 10000) in paragraph at lines 143--144 [297] Underfull \hbox (badness 10000) in paragraph at lines 145--148 Underfull \hbox (badness 10000) in paragraph at lines 149--150 Underfull \hbox (badness 10000) in paragraph at lines 159--162 [298] Overfull \hbox (69.74638pt too wide) in paragraph at lines 236--236 []\OT1/cmtt/m/n/10 /usr/share/themes/Mist/gtk-2.0/gtkrc:48: Engine "mist" is un supported, ignoring[] Overfull \hbox (153.74565pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at weka.gui.explorer.PreprocessPanel.addPropertyChang eListener(PreprocessPanel.java:519)[] Overfull \hbox (95.99615pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at javax.swing.plaf.synth.SynthPanelUI.installListene rs(SynthPanelUI.java:49)[] Overfull \hbox (59.24648pt too wide) in paragraph at lines 236--236 [] \OT1/cmtt/m/n/10 at javax.swing.plaf.synth.SynthPanelUI.installUI(Synt hPanelUI.java:38)[] Underfull \hbox (badness 10000) in paragraph at lines 245--247 Underfull \hbox (badness 10000) in paragraph at lines 248--249 Underfull \hbox (badness 10000) in paragraph at lines 250--251 Underfull \hbox (badness 10000) in paragraph at lines 252--253 Underfull \hbox (badness 10000) in paragraph at lines 255--256 [299] Underfull \hbox (badness 10000) in paragraph at lines 257--258 Overfull \hbox (9.16362pt too wide) in paragraph at lines 264--265 []\OT1/cmr/m/n/10 Java VM op-tions ([][][][]) ) (./bibliography.tex [300] Underfull \hbox (badness 3514) in paragraph at lines 31--35 []\OT1/cmr/m/it/10 Weka Ex-am-ples \OT1/cmr/m/n/10 -- A col-lec-tion of ex-am-p le classes, as part of Underfull \hbox (badness 5119) in paragraph at lines 31--35 \OT1/cmr/m/n/10 an ANT project, in-cluded in the WEKA snap-shots (avail-able Underfull \hbox (badness 10000) in paragraph at lines 31--35 \OT1/cmr/m/n/10 for down-load on the home-page) or di-rectly from sub-ver-sion Overfull \hbox (64.80228pt too wide) in paragraph at lines 31--35 [][][][] Underfull \vbox (badness 10000) has occurred while \output is active [301] Overfull \vbox (45.33775pt too high) has occurred while \output is active [302] Overfull \hbox (22.2144pt too wide) in paragraph at lines 103--106 []\OT1/cmr/m/n/9 Cozman. See [][][][] ) [303] (./manual.aux) ) (see the transcript file for additional information) Output written on manual.dvi (303 pages, 966808 bytes). Transcript written on manual.log. make[1]: Leaving directory '/build/reproducible-path/weka-3.6.14' dh_auto_test create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/weka-3.6.14' install -m644 -D dist/weka.jar debian/weka/usr/share/java/weka-3.6.14.jar dh_link -pweka /usr/share/java/weka-3.6.14.jar /usr/share/java/weka.jar #main overview page install -m755 -d debian/weka-doc/usr/share/doc/weka-doc install -m644 documentation.css documentation.html weka.gif -t debian/weka-doc/usr/share/doc/weka-doc/ #javadoc cp -r doc debian/weka-doc/usr/share/doc/weka-doc/ #pdf's install -m644 wekadocs/manual/manual.pdf debian/weka-doc/usr/share/doc/weka-doc/WekaManual.pdf make[1]: Leaving directory '/build/reproducible-path/weka-3.6.14' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package weka: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'weka' in '../weka_3.6.14-2_all.deb'. dpkg-deb: building package 'weka-doc' in '../weka-doc_3.6.14-2_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../weka_3.6.14-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4959 and its subdirectories I: Current time: Sat Feb 15 15:17:41 -12 2025 I: pbuilder-time-stamp: 1739675861 Sun Jan 14 20:54:46 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos12-i386.debian.net. Sun Jan 14 20:54:46 UTC 2024 I: Preparing to do remote build '2' on ionos12-i386.debian.net. Sun Jan 14 21:02:07 UTC 2024 I: Deleting $TMPDIR on ionos12-i386.debian.net. Sun Jan 14 21:02:07 UTC 2024 I: weka_3.6.14-2_i386.changes: Format: 1.8 Date: Mon, 08 Feb 2021 15:20:21 +0100 Source: weka Binary: weka weka-doc Architecture: all Version: 3.6.14-2 Distribution: unstable Urgency: medium Maintainer: Debian Java Maintainers Changed-By: Emmanuel Bourg Description: weka - Machine learning algorithms for data mining tasks weka-doc - documentation for the Weka machine learning suite Closes: 981828 Changes: weka (3.6.14-2) unstable; urgency=medium . * Team upload. * Fixed the build failure with OpenJDK 17 (Closes: #981828) * Build with the DH sequencer instead of CDBS * Standards-Version updated to 4.5.1 * Switch to debhelper level 13 * Use salsa.debian.org Vcs-* URLs Checksums-Sha1: 03838aa201eecd31a1b96832b51ee5bfd3c5f366 5479992 weka-doc_3.6.14-2_all.deb 62ad0656ad59e728020b9d5da4dbb517905a286f 6627668 weka_3.6.14-2_all.deb 83764c459f75e4583d6299150bc053164cc9ab7e 9813 weka_3.6.14-2_i386.buildinfo Checksums-Sha256: 7db0467a5fa2a7061b55c9195203de71056340503f04ac6b1be91b995a253de3 5479992 weka-doc_3.6.14-2_all.deb b953ddad162a3be37b433312c1ad8ffd2cd786d244fb5cfd5f1b0dfb4d4eed6c 6627668 weka_3.6.14-2_all.deb f6748fffb05ad97a2b69577f692dd4b03dc23e53c572d6b9478a72ff07c00580 9813 weka_3.6.14-2_i386.buildinfo Files: f90f480356c374baf538c248c8894f28 5479992 doc optional weka-doc_3.6.14-2_all.deb 5895b28bc8a99e8aa3022d51b5e0fedc 6627668 science optional weka_3.6.14-2_all.deb 1d5b91eec57480a044273d0e6063671c 9813 science optional weka_3.6.14-2_i386.buildinfo Sun Jan 14 21:02:08 UTC 2024 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.8oUMLR5T/weka_3.6.14-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.8oUMLR5T/weka_3.6.14-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.8oUMLR5T/weka_3.6.14-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.8oUMLR5T/b1/weka_3.6.14-2_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.8oUMLR5T/b2/weka_3.6.14-2_i386.changes ## close_archive (total time: 0.000s) 0.000s 4 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer ## command (total time: 1.658s) 0.702s 6 calls xz 0.568s 6 calls diff 0.284s 11 calls pdftotext 0.085s 2 calls gzip 0.009s 1 call cmp 0.009s 1 call cmp (external) 0.001s 9 calls cmp (internal) ## compare_files (cumulative) (total time: 33.039s) 6.863s 1 call abc.DotChangesFile 6.814s 1 call abc.DebFile 6.759s 2 calls abc.XzFile 5.979s 1 call abc.DebDataTarFile 3.315s 1 call abc.GzipFile 3.195s 1 call abc.PdfFile 0.072s 1 call abc.TarFile 0.042s 1 call abc.Md5sumsFile ## container_extract (total time: 1.549s) 0.729s 2664 calls diffoscope.comparators.deb.DebTarContainer 0.702s 6 calls diffoscope.comparators.xz.XzContainer 0.085s 2 calls diffoscope.comparators.gzip.GzipContainer 0.027s 8 calls diffoscope.comparators.deb.DebContainer 0.006s 6 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 0.003s) 0.003s 4 calls linediff ## has_same_content_as (total time: 0.011s) 0.010s 2 calls abc.DebFile 0.000s 2 calls abc.Md5sumsFile 0.000s 2 calls abc.TextFile 0.000s 1 call abc.DebDataTarFile 0.000s 2 calls abc.XzFile 0.000s 1 call abc.DotChangesFile 0.000s 1 call abc.TarFile 0.000s 1 call abc.PdfFile 0.000s 1 call abc.GzipFile ## main (total time: 7.468s) 7.338s 2 calls outputs 0.130s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 6 calls diffoscope.comparators.xz.XzContainer 0.000s 4 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 2 calls diffoscope.comparators.gzip.GzipContainer ## output (total time: 0.032s) 0.032s 1 call html 0.001s 1 call text 0.000s 1 call json ## recognizes (total time: 0.286s) 0.137s 12 calls diffoscope.comparators.binary.FilesystemFile 0.067s 578 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.052s 358 calls diffoscope.comparators.utils.archive.ArchiveMember 0.029s 108 calls diffoscope.comparators.debian.DebControlMember 0.000s 10 calls abc.DotChangesFile 0.000s 16 calls abc.Md5sumsFile ## specialize (total time: 0.108s) 0.108s 13 calls specialize Sun Jan 14 21:02:16 UTC 2024 E: weka failed to build reproducibly in bullseye on i386. Sun Jan 14 21:02:16 UTC 2024 E: diffoscope 240 found issues, please check https://tests.reproducible-builds.org/debian/dbd/bullseye/i386/weka_3.6.14-2.diffoscope.html Sun Jan 14 21:02:18 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Jan 14 21:02:18 UTC 2024 I: Submitting 12K b1/weka_3.6.14-2_i386.buildinfo.asc Sun Jan 14 21:02:18 UTC 2024 I: Submitting 12K b2/weka_3.6.14-2_i386.buildinfo.asc Sun Jan 14 21:02:19 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Jan 14 21:02:19 UTC 2024 I: Done submitting .buildinfo files. Sun Jan 14 21:02:19 UTC 2024 I: Removing signed weka_3.6.14-2_i386.buildinfo.asc files: removed './b1/weka_3.6.14-2_i386.buildinfo.asc' removed './b2/weka_3.6.14-2_i386.buildinfo.asc'