Thu Jul 29 23:14:59 UTC 2021 I: starting to build tombo/bullseye/i386 on jenkins on '2021-07-29 23:14' Thu Jul 29 23:14:59 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_8/20119/console.log Thu Jul 29 23:14:59 UTC 2021 I: Downloading source for bullseye/tombo=1.5.1-2 --2021-07-29 23:14:59-- http://cdn-fastly.deb.debian.org/debian/pool/main/t/tombo/tombo_1.5.1-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2292 (2.2K) Saving to: ‘tombo_1.5.1-2.dsc’ 0K .. 100% 138M=0s 2021-07-29 23:14:59 (138 MB/s) - ‘tombo_1.5.1-2.dsc’ saved [2292/2292] Thu Jul 29 23:14:59 UTC 2021 I: tombo_1.5.1-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: tombo Binary: tombo, tombo-doc Architecture: any all Version: 1.5.1-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/nanoporetech/tombo Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/tombo Vcs-Git: https://salsa.debian.org/med-team/tombo.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, cython3, sphinx-doc, python3-sphinx, python3-sphinx-rtd-theme, python3-sphinx-argparse, libjs-mathjax, python3-h5py , python3-mappy , python3-numpy , python3-scipy , python3-tqdm , python3-nose2 Package-List: tombo deb science optional arch=any tombo-doc deb doc optional arch=all Checksums-Sha1: 94f33539552d8c2f7e6c06987fd264400fc17f84 22294835 tombo_1.5.1.orig.tar.gz 2d9159c2bb9b2f95569d21851c460d1112efd729 6344 tombo_1.5.1-2.debian.tar.xz Checksums-Sha256: f5f7ce37baee40b851ea867c2b835e6eae324ef90bdeb23fb931fde3272769a0 22294835 tombo_1.5.1.orig.tar.gz 8991b8857b34f835410d245cdb14bc8411808d383e20182918a9e79f4fe6f8de 6344 tombo_1.5.1-2.debian.tar.xz Files: 3709e4f4d6f4c58ec2d6ae216059929c 22294835 tombo_1.5.1.orig.tar.gz 7d73d7a3e73a3d33ffd2ec912756e76f 6344 tombo_1.5.1-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl8O+C0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFKOw/+NUE3BgnArzWwKGmFK4r4CJ6zcCPRUtV1 iueKGWetLRrgklYtD1/km6kIf7vQfhOqkGi9sfpdcJOjuaMEH+oRogaXdkOCj77O FzULnA0EWyflRKwvkSAdR34Kfi7g4/A/JmoqXZ0Yf66pqrNs2eH2+Yn9G9yKjM+4 sbfHglzTsOUPecyWbQRIuWgBH+1EC6ZaaHy6sC7eAL0JySJdqvA++M5A1gbeAinI CEUq/IYB5wZE7JK4piRmtHcBezXlAYtYWGp7WfCRNmG+FaU159Z+s1FVaCgjW53X 0tJNF8wTaPgJ7bMM/3epgH2Uq8+dc7hEzgaknNnqTBzooL8T6CbOgRoc/IsoG1Vz UYvX7oTIW90H8uk64/54myj8fU+IuxUWcBIuUQI3Irr9QqlxnE2AtHNG6gO8R4bf CX88LSb71XH9aPvMbmJdzvTOEV3CIosJLyNBt2bANf0XbbNuxWkXkKAnNkmUpj92 ywRtDoviB/iPmuy2/+HB+7fTuELHvQWFIOx0fShIFVhRUutKUF0jZmZrOshiy0E4 OmWRPy0BmekPEenCGuoP7tAD+hih9P0CefqTmlLhIfGXEulpDRb5h7YDfsvs58Ft TjPyXYJh1t2jETHgJh/iWnu7+uZe4eWviZhS+VxJJ4aov18U78Lktio4HomnrZ2G Wkvhd9nJrpo= =OPsi -----END PGP SIGNATURE----- Thu Jul 29 23:14:59 UTC 2021 I: Checking whether the package is not for us Thu Jul 29 23:14:59 UTC 2021 I: Starting 1st build on remote node ionos16-i386.debian.net. Thu Jul 29 23:14:59 UTC 2021 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Thu Jul 29 23:16:09 UTC 2021 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Aug 31 17:38:00 -12 2022 I: pbuilder-time-stamp: 1662010680 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [tombo_1.5.1-2.dsc] I: copying [./tombo_1.5.1.orig.tar.gz] I: copying [./tombo_1.5.1-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.xIoJs7_6/trustedkeys.kbx': General error gpgv: Signature made Wed Jul 15 00:35:57 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./tombo_1.5.1-2.dsc dpkg-source: info: extracting tombo in tombo-1.5.1 dpkg-source: info: unpacking tombo_1.5.1.orig.tar.gz dpkg-source: info: unpacking tombo_1.5.1-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_future.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying mathjax.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/30130/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='7a3d03265cb548959b3144096ae8470f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='30130' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.XUh81W84if/pbuilderrc_nBdm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.XUh81W84if/b1 --logfile b1/build.log tombo_1.5.1-2.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos16-i386 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) x86_64 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Jun 21 2021 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Feb 7 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 7 2021 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 2021 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Feb 7 2021 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 7 2021 more -rwsr-xr-x 1 root root 50720 Feb 7 2021 mount -rwxr-xr-x 1 root root 13856 Feb 7 2021 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 2021 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 30 03:46 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Feb 7 2021 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 7 2021 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 7 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/30130/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-setuptools, cython3, sphinx-doc, python3-sphinx, python3-sphinx-rtd-theme, python3-sphinx-argparse, libjs-mathjax, python3-h5py, python3-mappy, python3-numpy, python3-scipy, python3-tqdm, python3-nose2 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on sphinx-doc; however: Package sphinx-doc is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-rtd-theme; however: Package python3-sphinx-rtd-theme is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx-argparse; however: Package python3-sphinx-argparse is not installed. pbuilder-satisfydepends-dummy depends on libjs-mathjax; however: Package libjs-mathjax is not installed. pbuilder-satisfydepends-dummy depends on python3-h5py; however: Package python3-h5py is not installed. pbuilder-satisfydepends-dummy depends on python3-mappy; however: Package python3-mappy is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-tqdm; however: Package python3-tqdm is not installed. pbuilder-satisfydepends-dummy depends on python3-nose2; however: Package python3-nose2 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} docutils-doc{a} dwz{a} file{a} fonts-font-awesome{a} fonts-lato{a} fonts-mathjax{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libhdf5-103-1{a} libhdf5-hl-100{a} libicu67{a} libjs-jquery{a} libjs-mathjax{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} liblzf1{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libsz2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} openssl{a} po-debconf{a} python-babel-localedata{a} python-requests-doc{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-coverage{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-doc{a} python3-docutils{a} python3-h5py{a} python3-h5py-serial{a} python3-idna{a} python3-imagesize{a} python3-jinja2{a} python3-lib2to3{a} python3-mappy{a} python3-markupsafe{a} python3-minimal{a} python3-nose2{a} python3-numpy{a} python3-packaging{a} python3-pkg-resources{a} python3-pygments{a} python3-pyparsing{a} python3-requests{a} python3-roman{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-snowballstemmer{a} python3-sphinx{a} python3-sphinx-argparse{a} python3-sphinx-rtd-theme{a} python3-tqdm{a} python3-tz{a} python3-urllib3{a} python3.9{a} python3.9-dev{a} python3.9-doc{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} sphinx-doc{a} sphinx-rtd-theme-common{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libjs-jquery-isonscreen libjs-jquery-tablesorter libjs-jquery-throttle-debounce libltdl-dev libmail-sendmail-perl libpaper-utils lynx python3-pil wget 0 packages upgraded, 118 newly installed, 0 to remove and 0 not upgraded. Need to get 89.5 MB of archives. After unpacking 398 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 fonts-lato all 2.0-2.1 [2696 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libpython3.9-minimal i386 3.9.2-1 [801 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2 [98.8 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 python3.9-minimal i386 3.9.2-1 [1956 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 python3-minimal i386 3.9.2-3 [38.2 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 media-types all 4.0.0 [30.3 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 libmpdec3 i386 2.5.1-1 [91.9 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 readline-common all 8.1-1 [73.7 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 libreadline8 i386 8.1-1 [173 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 libpython3.9-stdlib i386 3.9.2-1 [1703 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 python3.9 i386 3.9.2-1 [466 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 libpython3-stdlib i386 3.9.2-3 [21.4 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 python3 i386 3.9.2-3 [37.9 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 sgml-base all 1.30 [15.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 openssl i386 1.1.1k-1 [860 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 ca-certificates all 20210119 [158 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 cython3 i386 0.29.21-3+b1 [1303 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-7 [8775 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 python3-distutils all 3.9.2-1 [143 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 52 http://deb.debian.org/debian bullseye/main i386 xml-core all 0.18+nmu1 [23.8 kB] Get: 53 http://deb.debian.org/debian bullseye/main i386 docutils-common all 0.16+dfsg-4 [129 kB] Get: 54 http://deb.debian.org/debian bullseye/main i386 docutils-doc all 0.16+dfsg-4 [932 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 57 http://deb.debian.org/debian bullseye/main i386 libaec0 i386 1.0.4-1 [22.6 kB] Get: 58 http://deb.debian.org/debian bullseye/main i386 libblas3 i386 3.9.0-3 [147 kB] Get: 59 http://deb.debian.org/debian bullseye/main i386 libexpat1-dev i386 2.2.10-2 [147 kB] Get: 60 http://deb.debian.org/debian bullseye/main i386 libgfortran5 i386 10.2.1-6 [643 kB] Get: 61 http://deb.debian.org/debian bullseye/main i386 libsz2 i386 1.0.4-1 [6820 B] Get: 62 http://deb.debian.org/debian bullseye/main i386 libhdf5-103-1 i386 1.10.6+repack-4 [1156 kB] Get: 63 http://deb.debian.org/debian bullseye/main i386 libhdf5-hl-100 i386 1.10.6+repack-4 [93.2 kB] Get: 64 http://deb.debian.org/debian bullseye/main i386 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 65 http://deb.debian.org/debian bullseye/main i386 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 66 http://deb.debian.org/debian bullseye/main i386 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 67 http://deb.debian.org/debian bullseye/main i386 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 68 http://deb.debian.org/debian bullseye/main i386 liblapack3 i386 3.9.0-3 [1960 kB] Get: 69 http://deb.debian.org/debian bullseye/main i386 liblbfgsb0 i386 3.0+dfsg.3-9 [28.4 kB] Get: 70 http://deb.debian.org/debian bullseye/main i386 liblzf1 i386 3.6-3 [9668 B] Get: 71 http://deb.debian.org/debian bullseye/main i386 libpython3.9 i386 3.9.2-1 [1715 kB] Get: 72 http://deb.debian.org/debian bullseye/main i386 libpython3.9-dev i386 3.9.2-1 [3822 kB] Get: 73 http://deb.debian.org/debian bullseye/main i386 libpython3-dev i386 3.9.2-3 [21.7 kB] Get: 74 http://deb.debian.org/debian bullseye/main i386 libpython3-all-dev i386 3.9.2-3 [1068 B] Get: 75 http://deb.debian.org/debian bullseye/main i386 python-babel-localedata all 2.8.0+dfsg.1-7 [4997 kB] Get: 76 http://deb.debian.org/debian bullseye/main i386 python-requests-doc all 2.25.1+dfsg-2 [195 kB] Get: 77 http://deb.debian.org/debian bullseye/main i386 python3-alabaster all 0.7.8-1.1 [18.6 kB] Get: 78 http://deb.debian.org/debian bullseye/main i386 python3-all i386 3.9.2-3 [1060 B] Get: 79 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] Get: 80 http://deb.debian.org/debian bullseye/main i386 python3.9-dev i386 3.9.2-1 [515 kB] Get: 81 http://deb.debian.org/debian bullseye/main i386 python3-dev i386 3.9.2-3 [24.8 kB] Get: 82 http://deb.debian.org/debian bullseye/main i386 python3-all-dev i386 3.9.2-3 [1068 B] Get: 83 http://deb.debian.org/debian bullseye/main i386 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 84 http://deb.debian.org/debian bullseye/main i386 python3-tz all 2021.1-1 [34.8 kB] Get: 85 http://deb.debian.org/debian bullseye/main i386 python3-babel all 2.8.0+dfsg.1-7 [100 kB] Get: 86 http://deb.debian.org/debian bullseye/main i386 python3-certifi all 2020.6.20-1 [151 kB] Get: 87 http://deb.debian.org/debian bullseye/main i386 python3-chardet all 4.0.0-1 [99.0 kB] Get: 88 http://deb.debian.org/debian bullseye/main i386 python3-coverage i386 5.1+dfsg.1-2+b2 [169 kB] Get: 89 http://deb.debian.org/debian bullseye/main i386 python3-decorator all 4.4.2-2 [15.8 kB] Get: 90 http://deb.debian.org/debian bullseye/main i386 python3.9-doc all 3.9.2-1 [10.9 MB] Get: 91 http://deb.debian.org/debian bullseye/main i386 python3-doc all 3.9.2-3 [21.6 kB] Get: 92 http://deb.debian.org/debian bullseye/main i386 python3-roman all 2.0.0-5 [9064 B] Get: 93 http://deb.debian.org/debian bullseye/main i386 python3-docutils all 0.16+dfsg-4 [384 kB] Get: 94 http://deb.debian.org/debian bullseye/main i386 python3-numpy i386 1:1.19.5-1 [3600 kB] Get: 95 http://deb.debian.org/debian bullseye/main i386 python3-six all 1.16.0-1 [17.1 kB] Get: 96 http://deb.debian.org/debian bullseye/main i386 python3-h5py-serial i386 2.10.0-9+b2 [657 kB] Get: 97 http://deb.debian.org/debian bullseye/main i386 python3-h5py all 2.10.0-9 [11.4 kB] Get: 98 http://deb.debian.org/debian bullseye/main i386 python3-idna all 2.10-1 [37.4 kB] Get: 99 http://deb.debian.org/debian bullseye/main i386 python3-imagesize all 1.2.0-2 [5824 B] Get: 100 http://deb.debian.org/debian bullseye/main i386 python3-markupsafe i386 1.1.1-1+b3 [15.3 kB] Get: 101 http://deb.debian.org/debian bullseye/main i386 python3-jinja2 all 2.11.3-1 [114 kB] Get: 102 http://deb.debian.org/debian bullseye/main i386 python3-mappy i386 2.17+dfsg-12+b3 [163 kB] Get: 103 http://deb.debian.org/debian bullseye/main i386 python3-nose2 all 0.9.2-1 [94.1 kB] Get: 104 http://deb.debian.org/debian bullseye/main i386 python3-pyparsing all 2.4.7-1 [109 kB] Get: 105 http://deb.debian.org/debian bullseye/main i386 python3-packaging all 20.9-2 [33.5 kB] Get: 106 http://deb.debian.org/debian bullseye/main i386 python3-pygments all 2.7.1+dfsg-2.1 [657 kB] Get: 107 http://deb.debian.org/debian bullseye/main i386 python3-urllib3 all 1.26.5-1~exp1 [114 kB] Get: 108 http://deb.debian.org/debian bullseye/main i386 python3-requests all 2.25.1+dfsg-2 [69.3 kB] Get: 109 http://deb.debian.org/debian bullseye/main i386 python3-scipy i386 1.6.0-2 [11.9 MB] Get: 110 http://deb.debian.org/debian bullseye/main i386 python3-setuptools all 52.0.0-4 [366 kB] Get: 111 http://deb.debian.org/debian bullseye/main i386 python3-snowballstemmer all 2.1.0-1 [58.7 kB] Get: 112 http://deb.debian.org/debian bullseye/main i386 sphinx-common all 3.4.3-2 [578 kB] Get: 113 http://deb.debian.org/debian bullseye/main i386 python3-sphinx all 3.4.3-2 [545 kB] Get: 114 http://deb.debian.org/debian bullseye/main i386 sphinx-rtd-theme-common all 0.5.1+dfsg-1 [995 kB] Get: 115 http://deb.debian.org/debian bullseye/main i386 python3-sphinx-argparse all 0.2.5-1 [35.9 kB] Get: 116 http://deb.debian.org/debian bullseye/main i386 python3-sphinx-rtd-theme all 0.5.1+dfsg-1 [20.9 kB] Get: 117 http://deb.debian.org/debian bullseye/main i386 python3-tqdm all 4.57.0-2 [93.2 kB] Get: 118 http://deb.debian.org/debian bullseye/main i386 sphinx-doc all 3.4.3-2 [1971 kB] Fetched 89.5 MB in 1s (91.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-7_i386.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../1-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../3-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package fonts-lato. Preparing to unpack .../5-fonts-lato_2.0-2.1_all.deb ... Unpacking fonts-lato (2.0-2.1) ... Selecting previously unselected package libpython3.9-minimal:i386. Preparing to unpack .../6-libpython3.9-minimal_3.9.2-1_i386.deb ... Unpacking libpython3.9-minimal:i386 (3.9.2-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../7-libexpat1_2.2.10-2_i386.deb ... Unpacking libexpat1:i386 (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../8-python3.9-minimal_3.9.2-1_i386.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:i386 (3.9.2-1) ... Setting up libexpat1:i386 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20568 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_i386.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:i386. Preparing to unpack .../2-libmpdec3_2.5.1-1_i386.deb ... Unpacking libmpdec3:i386 (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../3-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:i386. Preparing to unpack .../4-libreadline8_8.1-1_i386.deb ... Unpacking libreadline8:i386 (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:i386. Preparing to unpack .../5-libpython3.9-stdlib_3.9.2-1_i386.deb ... Unpacking libpython3.9-stdlib:i386 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../6-python3.9_3.9.2-1_i386.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../7-libpython3-stdlib_3.9.2-3_i386.deb ... Unpacking libpython3-stdlib:i386 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20989 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_i386.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.30_all.deb ... Unpacking sgml-base (1.30) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_1.1.1k-1_i386.deb ... Unpacking openssl (1.1.1k-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20210119_all.deb ... Unpacking ca-certificates (20210119) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.39-3_i386.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../006-libmagic1_1%3a5.39-3_i386.deb ... Unpacking libmagic1:i386 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.39-3_i386.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.21-4_i386.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../009-libsigsegv2_2.13-1_i386.deb ... Unpacking libsigsegv2:i386 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../010-m4_1.4.18-5_i386.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../011-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../012-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../013-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../014-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package cython3. Preparing to unpack .../015-cython3_0.29.21-3+b1_i386.deb ... Unpacking cython3 (0.29.21-3+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../016-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../017-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../018-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../019-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../020-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../021-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../022-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../023-libelf1_0.183-1_i386.deb ... Unpacking libelf1:i386 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../024-dwz_0.13+20210201-1_i386.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:i386. Preparing to unpack .../025-libicu67_67.1-7_i386.deb ... Unpacking libicu67:i386 (67.1-7) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../026-libxml2_2.9.10+dfsg-6.7_i386.deb ... Unpacking libxml2:i386 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../027-gettext_0.21-4_i386.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../028-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../029-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../030-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../031-python3-lib2to3_3.9.2-1_all.deb ... Unpacking python3-lib2to3 (3.9.2-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../032-python3-distutils_3.9.2-1_all.deb ... Unpacking python3-distutils (3.9.2-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../033-dh-python_4.20201102+nmu1_all.deb ... Unpacking dh-python (4.20201102+nmu1) ... Selecting previously unselected package xml-core. Preparing to unpack .../034-xml-core_0.18+nmu1_all.deb ... Unpacking xml-core (0.18+nmu1) ... Selecting previously unselected package docutils-common. Preparing to unpack .../035-docutils-common_0.16+dfsg-4_all.deb ... Unpacking docutils-common (0.16+dfsg-4) ... Selecting previously unselected package docutils-doc. Preparing to unpack .../036-docutils-doc_0.16+dfsg-4_all.deb ... Unpacking docutils-doc (0.16+dfsg-4) ... Selecting previously unselected package fonts-font-awesome. Preparing to unpack .../037-fonts-font-awesome_5.0.10+really4.7.0~dfsg-4.1_all.deb ... Unpacking fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Selecting previously unselected package fonts-mathjax. Preparing to unpack .../038-fonts-mathjax_2.7.9+dfsg-1_all.deb ... Unpacking fonts-mathjax (2.7.9+dfsg-1) ... Selecting previously unselected package libaec0:i386. Preparing to unpack .../039-libaec0_1.0.4-1_i386.deb ... Unpacking libaec0:i386 (1.0.4-1) ... Selecting previously unselected package libblas3:i386. Preparing to unpack .../040-libblas3_3.9.0-3_i386.deb ... Unpacking libblas3:i386 (3.9.0-3) ... Selecting previously unselected package libexpat1-dev:i386. Preparing to unpack .../041-libexpat1-dev_2.2.10-2_i386.deb ... Unpacking libexpat1-dev:i386 (2.2.10-2) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../042-libgfortran5_10.2.1-6_i386.deb ... Unpacking libgfortran5:i386 (10.2.1-6) ... Selecting previously unselected package libsz2:i386. Preparing to unpack .../043-libsz2_1.0.4-1_i386.deb ... Unpacking libsz2:i386 (1.0.4-1) ... Selecting previously unselected package libhdf5-103-1:i386. Preparing to unpack .../044-libhdf5-103-1_1.10.6+repack-4_i386.deb ... Unpacking libhdf5-103-1:i386 (1.10.6+repack-4) ... Selecting previously unselected package libhdf5-hl-100:i386. Preparing to unpack .../045-libhdf5-hl-100_1.10.6+repack-4_i386.deb ... Unpacking libhdf5-hl-100:i386 (1.10.6+repack-4) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../046-libjs-jquery_3.5.1+dfsg+~3.5.5-7_all.deb ... Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Selecting previously unselected package libjs-mathjax. Preparing to unpack .../047-libjs-mathjax_2.7.9+dfsg-1_all.deb ... Unpacking libjs-mathjax (2.7.9+dfsg-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../048-libjs-underscore_1.9.1~dfsg-3_all.deb ... Unpacking libjs-underscore (1.9.1~dfsg-3) ... Selecting previously unselected package libjs-sphinxdoc. 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Unpacking python3.9-doc (3.9.2-1) ... Selecting previously unselected package python3-doc. Preparing to unpack .../073-python3-doc_3.9.2-3_all.deb ... Unpacking python3-doc (3.9.2-3) ... Selecting previously unselected package python3-roman. Preparing to unpack .../074-python3-roman_2.0.0-5_all.deb ... Unpacking python3-roman (2.0.0-5) ... Selecting previously unselected package python3-docutils. Preparing to unpack .../075-python3-docutils_0.16+dfsg-4_all.deb ... Unpacking python3-docutils (0.16+dfsg-4) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../076-python3-numpy_1%3a1.19.5-1_i386.deb ... Unpacking python3-numpy (1:1.19.5-1) ... Selecting previously unselected package python3-six. Preparing to unpack .../077-python3-six_1.16.0-1_all.deb ... Unpacking python3-six (1.16.0-1) ... Selecting previously unselected package python3-h5py-serial. Preparing to unpack .../078-python3-h5py-serial_2.10.0-9+b2_i386.deb ... Unpacking python3-h5py-serial (2.10.0-9+b2) ... Selecting previously unselected package python3-h5py. Preparing to unpack .../079-python3-h5py_2.10.0-9_all.deb ... Unpacking python3-h5py (2.10.0-9) ... Selecting previously unselected package python3-idna. Preparing to unpack .../080-python3-idna_2.10-1_all.deb ... Unpacking python3-idna (2.10-1) ... Selecting previously unselected package python3-imagesize. Preparing to unpack .../081-python3-imagesize_1.2.0-2_all.deb ... Unpacking python3-imagesize (1.2.0-2) ... Selecting previously unselected package python3-markupsafe. Preparing to unpack .../082-python3-markupsafe_1.1.1-1+b3_i386.deb ... Unpacking python3-markupsafe (1.1.1-1+b3) ... Selecting previously unselected package python3-jinja2. Preparing to unpack .../083-python3-jinja2_2.11.3-1_all.deb ... Unpacking python3-jinja2 (2.11.3-1) ... Selecting previously unselected package python3-mappy. Preparing to unpack .../084-python3-mappy_2.17+dfsg-12+b3_i386.deb ... Unpacking python3-mappy (2.17+dfsg-12+b3) ... Selecting previously unselected package python3-nose2. Preparing to unpack .../085-python3-nose2_0.9.2-1_all.deb ... Unpacking python3-nose2 (0.9.2-1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../086-python3-pyparsing_2.4.7-1_all.deb ... Unpacking python3-pyparsing (2.4.7-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../087-python3-packaging_20.9-2_all.deb ... Unpacking python3-packaging (20.9-2) ... Selecting previously unselected package python3-pygments. Preparing to unpack .../088-python3-pygments_2.7.1+dfsg-2.1_all.deb ... Unpacking python3-pygments (2.7.1+dfsg-2.1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../089-python3-urllib3_1.26.5-1~exp1_all.deb ... Unpacking python3-urllib3 (1.26.5-1~exp1) ... Selecting previously unselected package python3-requests. 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Selecting previously unselected package sphinx-rtd-theme-common. Preparing to unpack .../096-sphinx-rtd-theme-common_0.5.1+dfsg-1_all.deb ... Unpacking sphinx-rtd-theme-common (0.5.1+dfsg-1) ... Selecting previously unselected package python3-sphinx-argparse. Preparing to unpack .../097-python3-sphinx-argparse_0.2.5-1_all.deb ... Unpacking python3-sphinx-argparse (0.2.5-1) ... Selecting previously unselected package python3-sphinx-rtd-theme. Preparing to unpack .../098-python3-sphinx-rtd-theme_0.5.1+dfsg-1_all.deb ... Unpacking python3-sphinx-rtd-theme (0.5.1+dfsg-1) ... Selecting previously unselected package python3-tqdm. Preparing to unpack .../099-python3-tqdm_4.57.0-2_all.deb ... Unpacking python3-tqdm (4.57.0-2) ... Selecting previously unselected package sphinx-doc. Preparing to unpack .../100-sphinx-doc_3.4.3-2_all.deb ... Unpacking sphinx-doc (3.4.3-2) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:i386 (1.5.3-1) ... Setting up fonts-lato (2.0-2.1) ... Setting up fonts-mathjax (2.7.9+dfsg-1) ... Setting up docutils-doc (0.16+dfsg-4) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libjs-mathjax (2.7.9+dfsg-1) ... Setting up libicu67:i386 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:i386 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libaec0:i386 (1.0.4-1) ... Setting up python-babel-localedata (2.8.0+dfsg.1-7) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:i386 (3.9.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libexpat1-dev:i386 (2.2.10-2) ... Setting up liblzf1:i386 (3.6-3) ... Setting up libsigsegv2:i386 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libgfortran5:i386 (10.2.1-6) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libmpdec3:i386 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up sgml-base (1.30) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up openssl (1.1.1k-1) ... Setting up libelf1:i386 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:i386 (2.9.10+dfsg-6.7) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up sphinx-rtd-theme-common (0.5.1+dfsg-1) ... Setting up libsz2:i386 (1.0.4-1) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up liblapack3:i386 (3.9.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libreadline8:i386 (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up python3.9-doc (3.9.2-1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up python-requests-doc (2.25.1+dfsg-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up libhdf5-103-1:i386 (1.10.6+repack-4) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up xml-core (0.18+nmu1) ... Setting up python3-doc (3.9.2-3) ... Setting up libpython3.9-stdlib:i386 (3.9.2-1) ... Setting up libpython3-stdlib:i386 (3.9.2-3) ... Setting up liblbfgsb0:i386 (3.0+dfsg.3-9) ... Setting up libhdf5-hl-100:i386 (1.10.6+repack-4) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up sphinx-doc (3.4.3-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libpython3.9:i386 (3.9.2-1) ... Setting up sphinx-common (3.4.3-2) ... Setting up python3.9 (3.9.2-1) ... Setting up libpython3.9-dev:i386 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-markupsafe (1.1.1-1+b3) ... Setting up python3-tz (2021.1-1) ... Setting up python3-six (1.16.0-1) ... Setting up python3-roman (2.0.0-5) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-jinja2 (2.11.3-1) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-certifi (2020.6.20-1) ... Setting up python3-snowballstemmer (2.1.0-1) ... Setting up python3-idna (2.10-1) ... Setting up cython3 (0.29.21-3+b1) ... Setting up python3-urllib3 (1.26.5-1~exp1) ... Setting up python3.9-dev (3.9.2-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-imagesize (1.2.0-2) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up libpython3-dev:i386 (3.9.2-3) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-babel (2.8.0+dfsg.1-7) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-alabaster (0.7.8-1.1) ... Setting up python3-tqdm (4.57.0-2) ... Setting up python3-all (3.9.2-3) ... Setting up python3-coverage (5.1+dfsg.1-2+b2) ... Setting up python3-mappy (2.17+dfsg-12+b3) ... Setting up python3-nose2 (0.9.2-1) ... Setting up python3-pygments (2.7.1+dfsg-2.1) ... Setting up python3-packaging (20.9-2) ... Setting up python3-chardet (4.0.0-1) ... Setting up libpython3-all-dev:i386 (3.9.2-3) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-all-dev (3.9.2-3) ... Setting up python3-scipy (1.6.0-2) ... Setting up python3-h5py-serial (2.10.0-9+b2) ... Setting up python3-h5py (2.10.0-9) ... Processing triggers for libc-bin (2.31-13) ... Processing triggers for sgml-base (1.30) ... Setting up docutils-common (0.16+dfsg-4) ... Processing triggers for sgml-base (1.30) ... Setting up python3-docutils (0.16+dfsg-4) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-sphinx (3.4.3-2) ... Setting up python3-sphinx-rtd-theme (0.5.1+dfsg-1) ... Setting up python3-sphinx-argparse (0.2.5-1) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/tombo-1.5.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package tombo dpkg-buildpackage: info: source version 1.5.1-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/tombo-1.5.1/.pybuild/cpython3_3.9/build' (and everything under it) 'build/bdist.linux-i386' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/tombo-1.5.1' dh_auto_build I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo copying tombo/_default_parameters.py -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo copying tombo/__main__.py -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo copying tombo/tombo_stats.py -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo copying tombo/resquiggle.py -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo copying tombo/__init__.py -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo copying tombo/_version.py -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo copying tombo/_text_output_commands.py -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo copying tombo/_preprocess.py -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo copying tombo/_option_parsers.py -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo copying tombo/_event_resquiggle.py -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo copying tombo/tombo_helper.py -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo copying tombo/_filter_reads.py -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo copying tombo/_plot_commands.py -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo running egg_info creating ont_tombo.egg-info writing ont_tombo.egg-info/PKG-INFO writing dependency_links to ont_tombo.egg-info/dependency_links.txt writing entry points to ont_tombo.egg-info/entry_points.txt writing requirements to ont_tombo.egg-info/requires.txt writing top-level names to ont_tombo.egg-info/top_level.txt writing manifest file 'ont_tombo.egg-info/SOURCES.txt' reading manifest file 'ont_tombo.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*' under directory 'cython' writing manifest file 'ont_tombo.egg-info/SOURCES.txt' copying tombo/_c_dynamic_programming.pyx -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo copying tombo/_c_helper.pyx -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo creating /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts copying tombo/R_scripts/debugDP.R -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts copying tombo/R_scripts/debugFit.R -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts copying tombo/R_scripts/debugRawDP.R -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts copying tombo/R_scripts/plotGroupComp.R -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts copying tombo/R_scripts/plotKmerDist.R -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts copying tombo/R_scripts/plotModelComp.R -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts copying tombo/R_scripts/plotMotifStats.R -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts copying tombo/R_scripts/plotMultiReadCorr.R -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts copying tombo/R_scripts/plotPerReadStats.R -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts copying tombo/R_scripts/plotROC.R -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts copying tombo/R_scripts/plotROCPerRead.R -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts copying tombo/R_scripts/plotReadCorr.R -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts copying tombo/R_scripts/plotSigMDS.R -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts copying tombo/R_scripts/plotSingleRead.R -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts copying tombo/R_scripts/plotSingleRun.R -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts creating /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/tombo_models copying tombo/tombo_models/tombo.DNA.5mC.model -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/tombo_models copying tombo/tombo_models/tombo.DNA.6mA.model -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/tombo_models copying tombo/tombo_models/tombo.DNA.CpG.model -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/tombo_models copying tombo/tombo_models/tombo.DNA.dam.model -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/tombo_models copying tombo/tombo_models/tombo.DNA.dcm.model -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/tombo_models copying tombo/tombo_models/tombo.DNA.model -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/tombo_models copying tombo/tombo_models/tombo.RNA.180mV.model -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/tombo_models copying tombo/tombo_models/tombo.RNA.200mV.model -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/tombo_models copying tombo/tombo_models/tombo.RNA.5mC.model -> /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/tombo_models running build_ext cythoning tombo/_c_dynamic_programming.pyx to tombo/_c_dynamic_programming.cpp /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/tombo-1.5.1/tombo/_c_dynamic_programming.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning tombo/_c_helper.pyx to tombo/_c_helper.cpp /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/tombo-1.5.1/tombo/_c_helper.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'tombo._c_dynamic_programming' extension creating build creating build/temp.linux-i386-3.9 creating build/temp.linux-i386-3.9/tombo i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/tombo-1.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c tombo/_c_dynamic_programming.cpp -o build/temp.linux-i386-3.9/tombo/_c_dynamic_programming.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from tombo/_c_dynamic_programming.cpp:624: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ tombo/_c_dynamic_programming.cpp: In function 'PyObject* __pyx_pf_5tombo_22_c_dynamic_programming_2c_reg_z_scores(PyObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, PyArrayObject*, __pyx_t_5tombo_22_c_dynamic_programming_DTYPE_INT_t, __pyx_t_5tombo_22_c_dynamic_programming_DTYPE_INT_t, __pyx_t_5tombo_22_c_dynamic_programming_DTYPE_INT_t, __pyx_t_5tombo_22_c_dynamic_programming_DTYPE_INT_t, PyObject*)': tombo/_c_dynamic_programming.cpp:3638:36: warning: '__pyx_v_np_max_half_z_score' may be used uninitialized in this function [-Wmaybe-uninitialized] 3638 | __pyx_t_20 = PyFloat_FromDouble(__pyx_v_np_max_half_z_score); if (unlikely(!__pyx_t_20)) __PYX_ERR(0, 93, __pyx_L1_error) | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/tombo-1.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/tombo/_c_dynamic_programming.o -o /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/_c_dynamic_programming.cpython-39-i386-linux-gnu.so building 'tombo._c_helper' extension i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/tombo-1.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c tombo/_c_helper.cpp -o build/temp.linux-i386-3.9/tombo/_c_helper.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from tombo/_c_helper.cpp:624: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/tombo-1.5.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/tombo/_c_helper.o -o /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/_c_helper.cpython-39-i386-linux-gnu.so sphinx-build -N -bhtml docs docs/build Running Sphinx v3.4.3 Creating file ./tombo.rst. making output directory... done building [mo]: targets for 0 po files that are out of date building [html]: targets for 11 source files that are out of date updating environment: [new config] 11 added, 0 changed, 0 removed reading sources... [ 9%] examples reading sources... [ 18%] filtering reading sources... [ 27%] index reading sources... [ 36%] model_training reading sources... [ 45%] modified_base_detection reading sources... [ 54%] plotting reading sources... [ 63%] resquiggle reading sources... [ 72%] rna reading sources... [ 81%] text_output reading sources... [ 90%] tombo reading sources... [100%] tutorials WARNING: autodoc: failed to import module 'tombo'; the following exception was raised: No module named 'tombo' WARNING: autodoc: failed to import module 'resquiggle' from module 'tombo'; the following exception was raised: No module named 'tombo' WARNING: autodoc: failed to import module 'tombo_helper' from module 'tombo'; the following exception was raised: No module named 'tombo' WARNING: autodoc: failed to import module 'tombo_stats' from module 'tombo'; the following exception was raised: No module named 'tombo' looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [ 9%] examples writing output... [ 18%] filtering writing output... [ 27%] index writing output... [ 36%] model_training writing output... [ 45%] modified_base_detection writing output... [ 54%] plotting writing output... [ 63%] resquiggle writing output... [ 72%] rna writing output... [ 81%] text_output writing output... [ 90%] tombo writing output... [100%] tutorials generating indices... genindex done writing additional pages... search done copying images... [ 4%] _images/testing_method_comparison.png copying images... [ 8%] _images/alt_density_est.png copying images... [ 13%] _images/old_correction_plot.png copying images... [ 17%] _images/outlier_robust_llr.gif copying images... [ 21%] _images/dampened_fraction.png copying images... [ 26%] _images/single_samp.png copying images... [ 30%] _images/sample_comp.png copying images... [ 34%] _images/model_comp.png copying images... [ 39%] _images/alt_model_comp.png copying images... [ 43%] _images/boxplot.png copying images... [ 47%] _images/quantile.png copying images... [ 52%] _images/density.png copying images... [ 56%] _images/pre_read_5mC.png copying images... [ 60%] _images/per_read_do_novo.png copying images... [ 65%] _images/stat_dist.png copying images... [ 69%] _images/kmer_levels.png copying images... [ 73%] _images/roc.png copying images... [ 78%] _images/per_read_stat_dist.png copying images... [ 82%] _images/begin_half_z_scores.png copying images... [ 86%] _images/begin_forward_pass.png copying images... [ 91%] _images/adaptive_half_z_scores.png copying images... [ 95%] _images/adaptive_forward_pass.png copying images... [100%] _images/stat_dist_null.png copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 4 warnings. The HTML pages are in docs/build. make[1]: Leaving directory '/build/tombo-1.5.1' dh_auto_test -O--buildsystem=pybuild I: pybuild base:232: cd /build/tombo-1.5.1/.pybuild/cpython3_3.9/build; python3.9 -m nose2 -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/tombo-1.5.1/debian/tmp running install running build running build_py running egg_info writing ont_tombo.egg-info/PKG-INFO writing dependency_links to ont_tombo.egg-info/dependency_links.txt writing entry points to ont_tombo.egg-info/entry_points.txt writing requirements to ont_tombo.egg-info/requires.txt writing top-level names to ont_tombo.egg-info/top_level.txt reading manifest file 'ont_tombo.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*' under directory 'cython' writing manifest file 'ont_tombo.egg-info/SOURCES.txt' running build_ext skipping 'tombo/_c_dynamic_programming.cpp' Cython extension (up-to-date) skipping 'tombo/_c_helper.cpp' Cython extension (up-to-date) running install_lib creating /build/tombo-1.5.1/debian/tmp/usr creating /build/tombo-1.5.1/debian/tmp/usr/lib creating /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9 creating /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages creating /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo creating /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.DNA.5mC.model -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.DNA.6mA.model -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.RNA.180mV.model -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.DNA.dcm.model -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.DNA.dam.model -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.DNA.CpG.model -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.DNA.model -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.RNA.200mV.model -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/tombo_models/tombo.RNA.5mC.model -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_models copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/_default_parameters.py -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/_c_dynamic_programming.pyx -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo creating /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotSigMDS.R -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotMotifStats.R -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotPerReadStats.R -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotGroupComp.R -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotROC.R -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotModelComp.R -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotReadCorr.R -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts/debugDP.R -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts/debugRawDP.R -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotSingleRun.R -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotKmerDist.R -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts/debugFit.R -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotMultiReadCorr.R -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotROCPerRead.R -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/R_scripts/plotSingleRead.R -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/R_scripts copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/__main__.py -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/_c_helper.pyx -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/tombo_stats.py -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/_c_dynamic_programming.cpython-39-i386-linux-gnu.so -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/resquiggle.py -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/__init__.py -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/_version.py -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/_text_output_commands.py -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/_preprocess.py -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/_option_parsers.py -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/_event_resquiggle.py -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/tombo_helper.py -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/_filter_reads.py -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/_plot_commands.py -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo copying /build/tombo-1.5.1/.pybuild/cpython3_3.9/build/tombo/_c_helper.cpython-39-i386-linux-gnu.so -> /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo byte-compiling /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_default_parameters.py to _default_parameters.cpython-39.pyc byte-compiling /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/__main__.py to __main__.cpython-39.pyc byte-compiling /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_stats.py to tombo_stats.cpython-39.pyc byte-compiling /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/resquiggle.py to resquiggle.cpython-39.pyc byte-compiling /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/__init__.py to __init__.cpython-39.pyc byte-compiling /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_version.py to _version.cpython-39.pyc byte-compiling /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_text_output_commands.py to _text_output_commands.cpython-39.pyc byte-compiling /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_preprocess.py to _preprocess.cpython-39.pyc byte-compiling /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_option_parsers.py to _option_parsers.cpython-39.pyc byte-compiling /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_event_resquiggle.py to _event_resquiggle.cpython-39.pyc byte-compiling /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/tombo_helper.py to tombo_helper.cpython-39.pyc byte-compiling /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_filter_reads.py to _filter_reads.cpython-39.pyc byte-compiling /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/tombo/_plot_commands.py to _plot_commands.cpython-39.pyc running install_egg_info Copying ont_tombo.egg-info to /build/tombo-1.5.1/debian/tmp/usr/lib/python3.9/dist-packages/ont_tombo-1.5.1.egg-info Skipping SOURCES.txt running install_scripts Installing tombo script to /build/tombo-1.5.1/debian/tmp/usr/bin dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_sphinxdoc -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/tombo/usr/share/tombo/scripts/dump_per_read_statistics.py dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild debian/rules override_dh_fixperms make[1]: Entering directory '/build/tombo-1.5.1' dh_fixperms find debian -name "*.model" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/tombo-1.5.1' dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/tombo/usr/lib/python3/dist-packages/tombo/_c_helper.cpython-39-i386-linux-gnu.so was not linked against libpthread.so.0 (it uses none of the library's symbols) dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package tombo-doc: substitution variable ${sphinxdoc:Built-Using} unused, but is defined dpkg-gencontrol: warning: package tombo: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package tombo: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'tombo' in '../tombo_1.5.1-2_i386.deb'. dpkg-deb: building package 'tombo-dbgsym' in '../tombo-dbgsym_1.5.1-2_i386.deb'. dpkg-deb: building package 'tombo-doc' in '../tombo-doc_1.5.1-2_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../tombo_1.5.1-2_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/30130 and its subdirectories I: Current time: Wed Aug 31 17:39:08 -12 2022 I: pbuilder-time-stamp: 1662010748 Thu Jul 29 23:16:10 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos12-i386.debian.net. Thu Jul 29 23:16:10 UTC 2021 I: Preparing to do remote build '2' on ionos12-i386.debian.net. Thu Jul 29 23:24:52 UTC 2021 I: Deleting $TMPDIR on ionos12-i386.debian.net. Thu Jul 29 23:24:53 UTC 2021 I: tombo_1.5.1-2_i386.changes: Format: 1.8 Date: Wed, 15 Jul 2020 13:47:27 +0200 Source: tombo Binary: tombo tombo-dbgsym tombo-doc Architecture: i386 all Version: 1.5.1-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: tombo - identification of modified nucleotides from raw nanopore sequenci tombo-doc - identification of modified nucleotides from raw nanopore sequenci Changes: tombo (1.5.1-2) unstable; urgency=medium . * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. Checksums-Sha1: ff88921a762a045d13c83ed1943a204cb9f50001 357380 tombo-dbgsym_1.5.1-2_i386.deb 061d63b55e2faada7d5c8eedba72590490a961e0 21729816 tombo-doc_1.5.1-2_all.deb 87b6125a8ee541d42b0f416ef350d365c9951781 7863 tombo_1.5.1-2_i386.buildinfo 0e94f16e4d934976105a972f120675d8deb0f3e2 433328 tombo_1.5.1-2_i386.deb Checksums-Sha256: 8bc6d5237a99d810b0bcf010422099a4c9115fe3576ec66ff29c32dc1a885e8f 357380 tombo-dbgsym_1.5.1-2_i386.deb 9ea0835e8cae39cb32928b009b501a95c24026db09c5187599f563b4f5592402 21729816 tombo-doc_1.5.1-2_all.deb efa7362cd650602c63e12fe86502fe83b41ad12ba9b8cbeae6b38f9ac0285934 7863 tombo_1.5.1-2_i386.buildinfo d2101bf6f174bc54cdb42c01c88fb67b088c2c0944d221b3cf0eacd4e0f1e85f 433328 tombo_1.5.1-2_i386.deb Files: 9c9439be3701d19ce972c61d038ce80e 357380 debug optional tombo-dbgsym_1.5.1-2_i386.deb 8fe1607083e2d3c690781c0044a3ddaa 21729816 doc optional tombo-doc_1.5.1-2_all.deb d76c7e8b5d97b70fca811f0a966141eb 7863 science optional tombo_1.5.1-2_i386.buildinfo e73309fffe97973e2987e4b6ba0e9d3e 433328 science optional tombo_1.5.1-2_i386.deb Thu Jul 29 23:24:54 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.XUh81W84if/tombo_1.5.1-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.XUh81W84if/tombo_1.5.1-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.XUh81W84if/tombo_1.5.1-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.XUh81W84if/b1/tombo_1.5.1-2_i386.changes /srv/reproducible-results/rbuild-debian/tmp.XUh81W84if/b2/tombo_1.5.1-2_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.455s) 0.455s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.211s) 0.211s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Thu Jul 29 23:24:56 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Thu Jul 29 23:24:56 UTC 2021 I: tombo from bullseye built successfully and reproducibly on i386. Thu Jul 29 23:24:57 UTC 2021 I: Submitting .buildinfo files to external archives: Thu Jul 29 23:24:57 UTC 2021 I: Submitting 12K b1/tombo_1.5.1-2_i386.buildinfo.asc Thu Jul 29 23:24:58 UTC 2021 I: Submitting 12K b2/tombo_1.5.1-2_i386.buildinfo.asc Thu Jul 29 23:25:00 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jul 29 23:25:00 UTC 2021 I: Done submitting .buildinfo files. Thu Jul 29 23:25:00 UTC 2021 I: Removing signed tombo_1.5.1-2_i386.buildinfo.asc files: removed './b1/tombo_1.5.1-2_i386.buildinfo.asc' removed './b2/tombo_1.5.1-2_i386.buildinfo.asc'