Wed Sep 8 05:30:19 UTC 2021 I: starting to build r-bioc-scater/bullseye/i386 on jenkins on '2021-09-08 05:30' Wed Sep 8 05:30:19 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_4/18475/console.log Wed Sep 8 05:30:19 UTC 2021 I: Downloading source for bullseye/r-bioc-scater=1.18.3+ds-4 --2021-09-08 05:30:20-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/r-bioc-scater/r-bioc-scater_1.18.3%2bds-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2494 (2.4K) Saving to: ‘r-bioc-scater_1.18.3+ds-4.dsc’ 0K .. 100% 119M=0s 2021-09-08 05:30:20 (119 MB/s) - ‘r-bioc-scater_1.18.3+ds-4.dsc’ saved [2494/2494] Wed Sep 8 05:30:20 UTC 2021 I: r-bioc-scater_1.18.3+ds-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: r-bioc-scater Binary: r-bioc-scater Architecture: all Version: 1.18.3+ds-4 Maintainer: Debian R Packages Maintainers Uploaders: Steffen Moeller Homepage: https://bioconductor.org/packages/scater/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-scater Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-scater.git Testsuite: autopkgtest Testsuite-Triggers: r-bioc-destiny, r-bioc-dropletutils, r-cran-nmf, r-cran-pheatmap, r-cran-rtsne, r-cran-testthat, r-cran-uwot Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-singlecellexperiment, r-cran-ggplot2, r-cran-gridextra, r-cran-matrix, r-bioc-biocgenerics, r-bioc-s4vectors, r-bioc-summarizedexperiment, r-bioc-biocneighbors, r-bioc-biocsingular, r-bioc-biocparallel, r-cran-rlang, r-cran-ggbeeswarm, r-cran-viridis, r-bioc-delayedmatrixstats, r-bioc-scuttle Package-List: r-bioc-scater deb gnu-r optional arch=all Checksums-Sha1: d10ec7e93a5e69cddaa392b66c61f1d7d8f16907 233632 r-bioc-scater_1.18.3+ds.orig.tar.xz 87b8b4dee945949ada9e8c6126b6b94d32b3ab6d 2956 r-bioc-scater_1.18.3+ds-4.debian.tar.xz Checksums-Sha256: 48c8da85dedeb1250432f7ad5d79a31ba30cfb1a3b87fe516598799d42949cc3 233632 r-bioc-scater_1.18.3+ds.orig.tar.xz 24615988423e3b92fe68e9326b44290cbec0db7a7bc66730c2967d5c9df4988e 2956 r-bioc-scater_1.18.3+ds-4.debian.tar.xz Files: 95dda3d060c604840f4ce903723183d1 233632 r-bioc-scater_1.18.3+ds.orig.tar.xz 9f964049fa5377540abd136fa8adbd3d 2956 r-bioc-scater_1.18.3+ds-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmAfxIQOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtGovw//SPqQ4nL7ahn6B1SgHcbmPNi7rXuTkvyLOOHv agSfs5nl6oICmBWA5IT8fjRNmzAXezg1drNO6rnHRlFjQjaOWjpe9JBPgdeNs0Ye ud2iuzhq3h+yUPebHptQfWMje5wjXGHiPAvKQBFtktAkVATNDd7Rstx9rzm44BI1 qhlRqLEnFJ89eGYjNF432M9N0jOZV0ES3ywQqeL9EMfVoYgnjSa5VP6LZquTBJEw wKmLks99h563lXznQMFAORTwrZ77tLFbU/cEiUuDcfefVpYC6NDak/joXNYlImQZ ayRavrLQ5A/ayikK3t9bMVyWQI+XPNcn9us39bOxTsYaLbmvrqNc32bZqtFxBCgY Alzhyc3W7G0w4rispH+H6RFKz5+DvLqtu6QVVGBkN9TEXWpTIE0xmd4CjZyZNm6O wOg2nnm6aX59kZ1rx1TUQFRmZCD69SSkMA8eVldwNGypXmNvyCym8x0ILsTp/Fcz 2+hwglQAMeKsjUTwO+qWp0kjmuw3+c07MWQCx2OhnNIwBzsZyKqkKseUDYKku9ga zqFcS22+baI/b7WhEV3omzcHKamVqJbv8MMRn5+0yqa4BMSkutAX0T0o5mMP9XKA Volc6WQolvGAJsZUfOK6u2s3CdINKw1qiyAvHUb6qN7v5HbVmp2ML0OEezPO1Vdd NE0Mt9Y= =yvOt -----END PGP SIGNATURE----- Wed Sep 8 05:30:20 UTC 2021 I: Checking whether the package is not for us Wed Sep 8 05:30:20 UTC 2021 I: Starting 1st build on remote node ionos16-i386.debian.net. Wed Sep 8 05:30:20 UTC 2021 I: Preparing to do remote build '1' on ionos16-i386.debian.net. Wed Sep 8 05:31:48 UTC 2021 I: Deleting $TMPDIR on ionos16-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Oct 10 23:53:20 -12 2022 I: pbuilder-time-stamp: 1665489200 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [r-bioc-scater_1.18.3+ds-4.dsc] I: copying [./r-bioc-scater_1.18.3+ds.orig.tar.xz] I: copying [./r-bioc-scater_1.18.3+ds-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.KbFb502v/trustedkeys.kbx': General error gpgv: Signature made Sat Feb 6 22:44:20 2021 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-scater_1.18.3+ds-4.dsc dpkg-source: info: extracting r-bioc-scater in r-bioc-scater-1.18.3+ds dpkg-source: info: unpacking r-bioc-scater_1.18.3+ds.orig.tar.xz dpkg-source: info: unpacking r-bioc-scater_1.18.3+ds-4.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/32799/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=16' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='0d8b046dddd648318acc14d88d349c35' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='32799' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.tCr1vBFj1D/pbuilderrc_MJG0 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.tCr1vBFj1D/b1 --logfile b1/build.log r-bioc-scater_1.18.3+ds-4.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos16-i386 5.10.0-8-amd64 #1 SMP Debian 5.10.46-4 (2021-08-03) x86_64 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Aug 4 2021 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Jul 28 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Jul 28 2021 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 2021 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Jul 28 2021 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Jul 28 2021 more -rwsr-xr-x 1 root root 50720 Jul 28 2021 mount -rwxr-xr-x 1 root root 13856 Jul 28 2021 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Oct 10 03:46 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Jul 28 2021 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Jul 28 2021 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Jul 28 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/32799/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-singlecellexperiment, r-cran-ggplot2, r-cran-gridextra, r-cran-matrix, r-bioc-biocgenerics, r-bioc-s4vectors, r-bioc-summarizedexperiment, r-bioc-biocneighbors, r-bioc-biocsingular, r-bioc-biocparallel, r-cran-rlang, r-cran-ggbeeswarm, r-cran-viridis, r-bioc-delayedmatrixstats, r-bioc-scuttle dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-singlecellexperiment; however: Package r-bioc-singlecellexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on r-cran-gridextra; however: Package r-cran-gridextra is not installed. pbuilder-satisfydepends-dummy depends on r-cran-matrix; however: Package r-cran-matrix is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics; however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors; however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-summarizedexperiment; however: Package r-bioc-summarizedexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocneighbors; however: Package r-bioc-biocneighbors is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocsingular; however: Package r-bioc-biocsingular is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocparallel; however: Package r-bioc-biocparallel is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rlang; however: Package r-cran-rlang is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggbeeswarm; however: Package r-cran-ggbeeswarm is not installed. pbuilder-satisfydepends-dummy depends on r-cran-viridis; however: Package r-cran-viridis is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-delayedmatrixstats; however: Package r-bioc-delayedmatrixstats is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-scuttle; however: Package r-bioc-scuttle is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gfortran{a} gfortran-10{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} libaec-dev{a} libaec0{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libblosc1{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libcurl3-gnutls{a} libcurl4{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-10-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu67{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre16-3{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix2{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libreadline-dev{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libsnappy1v5{a} libssh2-1{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libsz2{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff5{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp6{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} littler{a} m4{a} man-db{a} openssl{a} pkg-config{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-beachmat{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-biocneighbors{a} r-bioc-biocparallel{a} r-bioc-biocsingular{a} r-bioc-delayedarray{a} r-bioc-delayedmatrixstats{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicranges{a} r-bioc-hdf5array{a} r-bioc-iranges{a} r-bioc-matrixgenerics{a} r-bioc-rhdf5{a} r-bioc-rhdf5filters{a} r-bioc-rhdf5lib{a} r-bioc-s4vectors{a} r-bioc-scuttle{a} r-bioc-singlecellexperiment{a} r-bioc-sparsematrixstats{a} r-bioc-summarizedexperiment{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-assertthat{a} r-cran-beeswarm{a} r-cran-bh{a} r-cran-bitops{a} r-cran-brio{a} r-cran-callr{a} r-cran-cli{a} r-cran-colorspace{a} r-cran-crayon{a} r-cran-desc{a} r-cran-diffobj{a} r-cran-digest{a} r-cran-ellipsis{a} r-cran-evaluate{a} r-cran-fansi{a} r-cran-farver{a} r-cran-formatr{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-ggbeeswarm{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gridextra{a} r-cran-gtable{a} r-cran-irlba{a} r-cran-isoband{a} r-cran-jsonlite{a} r-cran-labeling{a} r-cran-lambda.r{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-mgcv{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-pillar{a} r-cran-pkgbuild{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-pkgload{a} r-cran-praise{a} r-cran-prettyunits{a} r-cran-processx{a} r-cran-ps{a} r-cran-r6{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcpphnsw{a} r-cran-rcurl{a} r-cran-rematch2{a} r-cran-rlang{a} r-cran-rprojroot{a} r-cran-rstudioapi{a} r-cran-rsvd{a} r-cran-scales{a} r-cran-snow{a} r-cran-testthat{a} r-cran-tibble{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-vipor{a} r-cran-viridis{a} r-cran-viridislite{a} r-cran-waldo{a} r-cran-withr{a} readline-common{a} sensible-utils{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage libarchive-cpio-perl libclass-c3-xs-perl libclone-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-bioc-annotate r-bioc-biocstyle r-bioc-rsamtools r-cran-batchjobs r-cran-batchtools r-cran-bit64 r-cran-cliapp r-cran-codetools r-cran-curl r-cran-data.table r-cran-dbi r-cran-devtools r-cran-doparallel r-cran-dplyr r-cran-fnn r-cran-generics r-cran-hexbin r-cran-hms r-cran-knitr r-cran-lubridate r-cran-mapproj r-cran-mockery r-cran-mockr r-cran-plyr r-cran-quantreg r-cran-rmarkdown r-cran-rmpi r-cran-rsqlite r-cran-runit r-cran-sp r-cran-survival r-cran-testit r-cran-vdiffr r-cran-xml2 r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 281 newly installed, 0 to remove and 0 not upgraded. Need to get 200 MB of archives. After unpacking 578 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-8 [149 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 readline-common all 8.1-1 [73.7 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libreadline8 i386 8.1-1 [173 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 openssl i386 1.1.1k-1 [860 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 ca-certificates all 20210119 [158 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 ucf all 3.0043 [74.0 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 dctrl-tools i386 2.24-3 [105 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-7 [8775 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 zip i386 3.0-12 [240 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 unzip i386 6.0-26 [171 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 libpaper1 i386 1.1.28+b1 [21.7 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 libpaper-utils i386 1.1.28+b1 [18.6 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 libblas3 i386 3.9.0-3 [147 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2 [98.8 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 libpng16-16 i386 1.6.37-3 [303 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 libfreetype6 i386 2.10.4+dfsg-1 [429 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 fonts-dejavu-core all 2.37-2 [1069 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 fontconfig-config all 2.13.1-4.2 [281 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 libfontconfig1 i386 2.13.1-4.2 [358 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 libpixman-1-0 i386 0.40.0-1 [545 kB] Get: 52 http://deb.debian.org/debian bullseye/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 53 http://deb.debian.org/debian bullseye/main i386 libmd0 i386 1.0.3-3 [28.9 kB] Get: 54 http://deb.debian.org/debian bullseye/main i386 libbsd0 i386 0.11.3-1 [111 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 libxcb1 i386 1.14-3 [144 kB] Get: 57 http://deb.debian.org/debian bullseye/main i386 libx11-data all 2:1.7.2-1 [311 kB] Get: 58 http://deb.debian.org/debian bullseye/main i386 libx11-6 i386 2:1.7.2-1 [794 kB] Get: 59 http://deb.debian.org/debian bullseye/main i386 libxcb-render0 i386 1.14-3 [112 kB] Get: 60 http://deb.debian.org/debian bullseye/main i386 libxcb-shm0 i386 1.14-3 [102 kB] Get: 61 http://deb.debian.org/debian bullseye/main i386 libxext6 i386 2:1.3.3-1.1 [55.2 kB] Get: 62 http://deb.debian.org/debian bullseye/main i386 libxrender1 i386 1:0.9.10-1 [34.1 kB] Get: 63 http://deb.debian.org/debian bullseye/main i386 libcairo2 i386 1.16.0-5 [746 kB] Get: 64 http://deb.debian.org/debian bullseye/main i386 libsasl2-modules-db i386 2.1.27+dfsg-2.1 [70.0 kB] Get: 65 http://deb.debian.org/debian bullseye/main i386 libsasl2-2 i386 2.1.27+dfsg-2.1 [110 kB] Get: 66 http://deb.debian.org/debian bullseye/main i386 libldap-2.4-2 i386 2.4.57+dfsg-3 [244 kB] Get: 67 http://deb.debian.org/debian bullseye/main i386 libnghttp2-14 i386 1.43.0-1 [85.7 kB] Get: 68 http://deb.debian.org/debian bullseye/main i386 libpsl5 i386 0.21.0-1.2 [57.9 kB] Get: 69 http://deb.debian.org/debian bullseye/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 70 http://deb.debian.org/debian bullseye/main i386 libssh2-1 i386 1.9.0-2 [164 kB] Get: 71 http://deb.debian.org/debian bullseye/main i386 libcurl4 i386 7.74.0-1.3+b1 [372 kB] Get: 72 http://deb.debian.org/debian bullseye/main i386 libglib2.0-0 i386 2.66.8-1 [1437 kB] Get: 73 http://deb.debian.org/debian bullseye/main i386 libjpeg62-turbo i386 1:2.0.6-4 [160 kB] Get: 74 http://deb.debian.org/debian bullseye/main i386 libgfortran5 i386 10.2.1-6 [643 kB] Get: 75 http://deb.debian.org/debian bullseye/main i386 liblapack3 i386 3.9.0-3 [1960 kB] Get: 76 http://deb.debian.org/debian bullseye/main i386 fontconfig i386 2.13.1-4.2 [417 kB] Get: 77 http://deb.debian.org/debian bullseye/main i386 libfribidi0 i386 1.0.8-2 [65.4 kB] Get: 78 http://deb.debian.org/debian bullseye/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB] Get: 79 http://deb.debian.org/debian bullseye/main i386 libharfbuzz0b i386 2.7.4-1 [1490 kB] Get: 80 http://deb.debian.org/debian bullseye/main i386 libthai-data all 0.1.28-3 [170 kB] Get: 81 http://deb.debian.org/debian bullseye/main i386 libdatrie1 i386 0.2.13-1 [44.5 kB] Get: 82 http://deb.debian.org/debian bullseye/main i386 libthai0 i386 0.1.28-3 [55.3 kB] Get: 83 http://deb.debian.org/debian bullseye/main i386 libpango-1.0-0 i386 1.46.2-3 [197 kB] Get: 84 http://deb.debian.org/debian bullseye/main i386 libpangoft2-1.0-0 i386 1.46.2-3 [65.1 kB] Get: 85 http://deb.debian.org/debian bullseye/main i386 libpangocairo-1.0-0 i386 1.46.2-3 [51.9 kB] Get: 86 http://deb.debian.org/debian bullseye/main i386 libtcl8.6 i386 8.6.11+dfsg-1 [1082 kB] Get: 87 http://deb.debian.org/debian bullseye/main i386 libdeflate0 i386 1.7-1 [48.4 kB] Get: 88 http://deb.debian.org/debian bullseye/main i386 libjbig0 i386 2.1-3.1+b2 [31.5 kB] Get: 89 http://deb.debian.org/debian bullseye/main i386 libwebp6 i386 0.6.1-2.1 [269 kB] Get: 90 http://deb.debian.org/debian bullseye/main i386 libtiff5 i386 4.2.0-1 [305 kB] Get: 91 http://deb.debian.org/debian bullseye/main i386 libxft2 i386 2.3.2-2 [58.2 kB] Get: 92 http://deb.debian.org/debian bullseye/main i386 x11-common all 1:7.7+22 [252 kB] Get: 93 http://deb.debian.org/debian bullseye/main i386 libxss1 i386 1:1.2.3-1 [18.1 kB] Get: 94 http://deb.debian.org/debian bullseye/main i386 libtk8.6 i386 8.6.11-2 [825 kB] Get: 95 http://deb.debian.org/debian bullseye/main i386 libice6 i386 2:1.0.10-1 [60.8 kB] Get: 96 http://deb.debian.org/debian bullseye/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB] Get: 97 http://deb.debian.org/debian bullseye/main i386 libxt6 i386 1:1.2.0-1 [195 kB] Get: 98 http://deb.debian.org/debian bullseye/main i386 r-base-core i386 4.0.4-1 [25.1 MB] Get: 99 http://deb.debian.org/debian bullseye/main i386 libgfortran-10-dev i386 10.2.1-6 [705 kB] Get: 100 http://deb.debian.org/debian bullseye/main i386 gfortran-10 i386 10.2.1-6 [9642 kB] Get: 101 http://deb.debian.org/debian bullseye/main i386 gfortran i386 4:10.2.1-1 [1436 B] Get: 102 http://deb.debian.org/debian bullseye/main i386 libblas-dev i386 3.9.0-3 [157 kB] Get: 103 http://deb.debian.org/debian bullseye/main i386 liblapack-dev i386 3.9.0-3 [3759 kB] Get: 104 http://deb.debian.org/debian bullseye/main i386 libncurses6 i386 6.2+20201114-2 [110 kB] Get: 105 http://deb.debian.org/debian bullseye/main i386 libncurses-dev i386 6.2+20201114-2 [373 kB] Get: 106 http://deb.debian.org/debian bullseye/main i386 libncurses5-dev i386 6.2+20201114-2 [932 B] Get: 107 http://deb.debian.org/debian bullseye/main i386 libreadline-dev i386 8.1-1 [161 kB] Get: 108 http://deb.debian.org/debian bullseye/main i386 libjpeg62-turbo-dev i386 1:2.0.6-4 [299 kB] Get: 109 http://deb.debian.org/debian bullseye/main i386 libjpeg-dev i386 1:2.0.6-4 [67.8 kB] Get: 110 http://deb.debian.org/debian bullseye/main i386 libpcre2-16-0 i386 10.36-2 [231 kB] Get: 111 http://deb.debian.org/debian bullseye/main i386 libpcre2-32-0 i386 10.36-2 [219 kB] Get: 112 http://deb.debian.org/debian bullseye/main i386 libpcre2-posix2 i386 10.36-2 [49.2 kB] Get: 113 http://deb.debian.org/debian bullseye/main i386 libpcre2-dev i386 10.36-2 [739 kB] Get: 114 http://deb.debian.org/debian bullseye/main i386 libpcre16-3 i386 2:8.39-13 [258 kB] Get: 115 http://deb.debian.org/debian bullseye/main i386 libpcre32-3 i386 2:8.39-13 [249 kB] Get: 116 http://deb.debian.org/debian bullseye/main i386 libpcrecpp0v5 i386 2:8.39-13 [153 kB] Get: 117 http://deb.debian.org/debian bullseye/main i386 libpcre3-dev i386 2:8.39-13 [656 kB] Get: 118 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] Get: 119 http://deb.debian.org/debian bullseye/main i386 libpng-dev i386 1.6.37-3 [307 kB] Get: 120 http://deb.debian.org/debian bullseye/main i386 libbz2-dev i386 1.0.8-4 [31.3 kB] Get: 121 http://deb.debian.org/debian bullseye/main i386 liblzma-dev i386 5.2.5-2 [240 kB] Get: 122 http://deb.debian.org/debian bullseye/main i386 icu-devtools i386 67.1-7 [209 kB] Get: 123 http://deb.debian.org/debian bullseye/main i386 libicu-dev i386 67.1-7 [9801 kB] Get: 124 http://deb.debian.org/debian bullseye/main i386 libxmuu1 i386 2:1.1.2-2+b3 [24.2 kB] Get: 125 http://deb.debian.org/debian bullseye/main i386 xauth i386 1:1.1-1 [41.2 kB] Get: 126 http://deb.debian.org/debian bullseye/main i386 pkg-config i386 0.29.2-1 [66.3 kB] Get: 127 http://deb.debian.org/debian bullseye/main i386 r-base-dev all 4.0.4-1 [4484 B] Get: 128 http://deb.debian.org/debian bullseye/main i386 libfile-which-perl all 1.23-1 [16.6 kB] Get: 129 http://deb.debian.org/debian bullseye/main i386 libswitch-perl all 2.17-2.1 [20.0 kB] Get: 130 http://deb.debian.org/debian bullseye/main i386 libencode-locale-perl all 1.05-1.1 [13.2 kB] Get: 131 http://deb.debian.org/debian bullseye/main i386 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 132 http://deb.debian.org/debian bullseye/main i386 libhttp-date-perl all 6.05-1 [10.4 kB] Get: 133 http://deb.debian.org/debian bullseye/main i386 libio-html-perl all 1.004-2 [16.1 kB] Get: 134 http://deb.debian.org/debian bullseye/main i386 liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get: 135 http://deb.debian.org/debian bullseye/main i386 liburi-perl all 5.08-1 [90.6 kB] Get: 136 http://deb.debian.org/debian bullseye/main i386 libhttp-message-perl all 6.28-1 [79.6 kB] Get: 137 http://deb.debian.org/debian bullseye/main i386 libparams-util-perl i386 1.102-1+b1 [26.3 kB] Get: 138 http://deb.debian.org/debian bullseye/main i386 libsub-install-perl all 0.928-1.1 [10.8 kB] Get: 139 http://deb.debian.org/debian bullseye/main i386 libdata-optlist-perl all 0.110-1.1 [10.8 kB] Get: 140 http://deb.debian.org/debian bullseye/main i386 libb-hooks-op-check-perl i386 0.22-1+b3 [11.4 kB] Get: 141 http://deb.debian.org/debian bullseye/main i386 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] Get: 142 http://deb.debian.org/debian bullseye/main i386 libdevel-callchecker-perl i386 0.008-1+b2 [15.9 kB] Get: 143 http://deb.debian.org/debian bullseye/main i386 libparams-classify-perl i386 0.015-1+b3 [26.4 kB] Get: 144 http://deb.debian.org/debian bullseye/main i386 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get: 145 http://deb.debian.org/debian bullseye/main i386 libtry-tiny-perl all 0.30-1 [23.3 kB] Get: 146 http://deb.debian.org/debian bullseye/main i386 libmodule-implementation-perl all 0.09-1.1 [12.4 kB] Get: 147 http://deb.debian.org/debian bullseye/main i386 libpackage-stash-perl all 0.39-1 [21.9 kB] Get: 148 http://deb.debian.org/debian bullseye/main i386 libclass-load-perl all 0.25-1 [16.1 kB] Get: 149 http://deb.debian.org/debian bullseye/main i386 libclass-load-xs-perl i386 0.10-1+b5 [14.7 kB] Get: 150 http://deb.debian.org/debian bullseye/main i386 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get: 151 http://deb.debian.org/debian bullseye/main i386 libdevel-globaldestruction-perl all 0.14-1.1 [8312 B] Get: 152 http://deb.debian.org/debian bullseye/main i386 libalgorithm-c3-perl all 0.11-1 [11.7 kB] Get: 153 http://deb.debian.org/debian bullseye/main i386 libclass-c3-perl all 0.35-1 [22.9 kB] Get: 154 http://deb.debian.org/debian bullseye/main i386 libmro-compat-perl all 0.13-1 [12.2 kB] Get: 155 http://deb.debian.org/debian bullseye/main i386 libsub-identify-perl i386 0.14-1+b3 [12.2 kB] Get: 156 http://deb.debian.org/debian bullseye/main i386 libdevel-overloadinfo-perl all 0.005-1 [7212 B] Get: 157 http://deb.debian.org/debian bullseye/main i386 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get: 158 http://deb.debian.org/debian bullseye/main i386 libsub-exporter-perl all 0.987-1 [47.2 kB] Get: 159 http://deb.debian.org/debian bullseye/main i386 libeval-closure-perl all 0.14-1 [11.5 kB] Get: 160 http://deb.debian.org/debian bullseye/main i386 libdist-checkconflicts-perl all 0.11-1.1 [10.2 kB] Get: 161 http://deb.debian.org/debian bullseye/main i386 libmodule-runtime-conflicts-perl all 0.003-1.1 [7156 B] Get: 162 http://deb.debian.org/debian bullseye/main i386 libsub-name-perl i386 0.26-1+b1 [14.1 kB] Get: 163 http://deb.debian.org/debian bullseye/main i386 libpackage-deprecationmanager-perl all 0.17-1.1 [16.6 kB] Get: 164 http://deb.debian.org/debian bullseye/main i386 libpackage-stash-xs-perl i386 0.29-1+b2 [21.2 kB] Get: 165 http://deb.debian.org/debian bullseye/main i386 libmoose-perl i386 2.2014-2 [804 kB] Get: 166 http://deb.debian.org/debian bullseye/main i386 libvariable-magic-perl i386 0.62-1+b3 [46.2 kB] Get: 167 http://deb.debian.org/debian bullseye/main i386 libb-hooks-endofscope-perl all 0.24-1.1 [18.9 kB] Get: 168 http://deb.debian.org/debian bullseye/main i386 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get: 169 http://deb.debian.org/debian bullseye/main i386 libcurl3-gnutls i386 7.74.0-1.3+b1 [368 kB] Get: 170 http://deb.debian.org/debian bullseye/main i386 libwww-curl-perl i386 4.17-7+b1 [63.5 kB] Get: 171 http://deb.debian.org/debian bullseye/main i386 libwww-curl-simple-perl all 0.100191-2 [12.5 kB] Get: 172 http://deb.debian.org/debian bullseye/main i386 dh-r all 20210303 [41.8 kB] Get: 173 http://deb.debian.org/debian bullseye/main i386 hdf5-helpers i386 1.10.6+repack-4 [40.4 kB] Get: 174 http://deb.debian.org/debian bullseye/main i386 libaec0 i386 1.0.4-1 [22.6 kB] Get: 175 http://deb.debian.org/debian bullseye/main i386 libsz2 i386 1.0.4-1 [6820 B] Get: 176 http://deb.debian.org/debian bullseye/main i386 libaec-dev i386 1.0.4-1 [21.5 kB] Get: 177 http://deb.debian.org/debian bullseye/main i386 libsnappy1v5 i386 1.1.8-1 [19.0 kB] Get: 178 http://deb.debian.org/debian bullseye/main i386 libblosc1 i386 1.20.1+ds1-2 [50.5 kB] Get: 179 http://deb.debian.org/debian bullseye/main i386 libboost1.74-dev i386 1.74.0-9 [9534 kB] Get: 180 http://deb.debian.org/debian bullseye/main i386 libboost-dev i386 1.74.0.3 [4548 B] Get: 181 http://deb.debian.org/debian bullseye/main i386 libhdf5-103-1 i386 1.10.6+repack-4 [1156 kB] Get: 182 http://deb.debian.org/debian bullseye/main i386 libhdf5-cpp-103-1 i386 1.10.6+repack-4 [148 kB] Get: 183 http://deb.debian.org/debian bullseye/main i386 libhdf5-fortran-102 i386 1.10.6+repack-4 [114 kB] Get: 184 http://deb.debian.org/debian bullseye/main i386 libhdf5-hl-100 i386 1.10.6+repack-4 [93.2 kB] Get: 185 http://deb.debian.org/debian bullseye/main i386 libhdf5-hl-fortran-100 i386 1.10.6+repack-4 [58.3 kB] Get: 186 http://deb.debian.org/debian bullseye/main i386 libhdf5-hl-cpp-100 i386 1.10.6+repack-4 [38.1 kB] Get: 187 http://deb.debian.org/debian bullseye/main i386 libhdf5-dev i386 1.10.6+repack-4 [2586 kB] Get: 188 http://deb.debian.org/debian bullseye/main i386 r-cran-littler i386 0.3.12-1 [93.0 kB] Get: 189 http://deb.debian.org/debian bullseye/main i386 littler all 0.3.12-1 [15.6 kB] Get: 190 http://deb.debian.org/debian bullseye/main i386 r-bioc-biocgenerics all 0.36.0-1 [648 kB] Get: 191 http://deb.debian.org/debian bullseye/main i386 r-cran-lattice i386 0.20-41-1+b1 [1162 kB] Get: 192 http://deb.debian.org/debian bullseye/main i386 r-cran-matrix i386 1.3-2-1 [3582 kB] Get: 193 http://deb.debian.org/debian bullseye/main i386 r-cran-matrixstats i386 0.58.0-3 [642 kB] Get: 194 http://deb.debian.org/debian bullseye/main i386 r-bioc-matrixgenerics all 1.2.1-4 [288 kB] Get: 195 http://deb.debian.org/debian bullseye/main i386 r-bioc-s4vectors i386 0.28.1-1 [2034 kB] Get: 196 http://deb.debian.org/debian bullseye/main i386 r-bioc-iranges i386 2.24.1-1 [2176 kB] Get: 197 http://deb.debian.org/debian bullseye/main i386 r-bioc-delayedarray i386 0.16.1+dfsg-1 [1800 kB] Get: 198 http://deb.debian.org/debian bullseye/main i386 r-bioc-beachmat i386 2.6.4+ds-1 [96.4 kB] Get: 199 http://deb.debian.org/debian bullseye/main i386 r-bioc-biobase i386 2.50.0-1 [2230 kB] Get: 200 http://deb.debian.org/debian bullseye/main i386 r-cran-pkgkitten all 0.2.1-1 [26.5 kB] Get: 201 http://deb.debian.org/debian bullseye/main i386 r-cran-rcpp i386 1.0.6-1 [2046 kB] Get: 202 http://deb.debian.org/debian bullseye/main i386 r-cran-formatr all 1.7-2 [151 kB] Get: 203 http://deb.debian.org/debian bullseye/main i386 r-cran-lambda.r all 1.2.4-2 [118 kB] Get: 204 http://deb.debian.org/debian bullseye/main i386 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get: 205 http://deb.debian.org/debian bullseye/main i386 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get: 206 http://deb.debian.org/debian bullseye/main i386 r-cran-snow all 1:0.4.3-2 [109 kB] Get: 207 http://deb.debian.org/debian bullseye/main i386 r-cran-bh all 1.74.0-1 [5196 B] Get: 208 http://deb.debian.org/debian bullseye/main i386 r-bioc-biocparallel i386 1.24.1-1 [1142 kB] Get: 209 http://deb.debian.org/debian bullseye/main i386 r-cran-rcpphnsw i386 0.3.0.9001+ds-1 [148 kB] Get: 210 http://deb.debian.org/debian bullseye/main i386 r-bioc-biocneighbors i386 1.8.2+ds-1 [513 kB] Get: 211 http://deb.debian.org/debian bullseye/main i386 r-cran-irlba i386 2.3.3-2 [296 kB] Get: 212 http://deb.debian.org/debian bullseye/main i386 r-cran-rsvd all 1.0.3-3 [6129 kB] Get: 213 http://deb.debian.org/debian bullseye/main i386 r-bioc-biocsingular i386 1.6.0+ds-1 [426 kB] Get: 214 http://deb.debian.org/debian bullseye/main i386 r-bioc-sparsematrixstats i386 1.2.1+dfsg-4 [827 kB] Get: 215 http://deb.debian.org/debian bullseye/main i386 r-bioc-rhdf5lib i386 1.12.1+dfsg-3 [27.7 kB] Get: 216 http://deb.debian.org/debian bullseye/main i386 r-bioc-rhdf5filters i386 1.2.0+dfsg2-1 [22.3 kB] Get: 217 http://deb.debian.org/debian bullseye/main i386 r-bioc-rhdf5 i386 2.34.0+dfsg-1 [553 kB] Get: 218 http://deb.debian.org/debian bullseye/main i386 r-bioc-hdf5array i386 1.18.1-3 [8596 kB] Get: 219 http://deb.debian.org/debian bullseye/main i386 r-bioc-delayedmatrixstats all 1.12.3+ds-1 [414 kB] Get: 220 http://deb.debian.org/debian bullseye/main i386 r-cran-bitops i386 1.0-6-5 [23.8 kB] Get: 221 http://deb.debian.org/debian bullseye/main i386 r-cran-rcurl i386 1.98-1.2-1+b1 [761 kB] Get: 222 http://deb.debian.org/debian bullseye/main i386 r-bioc-genomeinfodbdata all 1.2.4-1 [10.7 MB] Get: 223 http://deb.debian.org/debian bullseye/main i386 r-bioc-genomeinfodb all 1.26.2-2 [3905 kB] Get: 224 http://deb.debian.org/debian bullseye/main i386 r-bioc-zlibbioc all 1.36.0+dfsg-1 [8824 B] Get: 225 http://deb.debian.org/debian bullseye/main i386 r-bioc-xvector i386 0.30.0-1 [622 kB] Get: 226 http://deb.debian.org/debian bullseye/main i386 r-bioc-genomicranges i386 1.42.0+dfsg-1 [1856 kB] Get: 227 http://deb.debian.org/debian bullseye/main i386 r-bioc-summarizedexperiment all 1.20.0+dfsg-1 [1955 kB] Get: 228 http://deb.debian.org/debian bullseye/main i386 r-bioc-singlecellexperiment all 1.12.0+ds-1 [758 kB] Get: 229 http://deb.debian.org/debian bullseye/main i386 r-bioc-scuttle i386 1.0.4+dfsg-5 [371 kB] Get: 230 http://deb.debian.org/debian bullseye/main i386 r-cran-assertthat all 0.2.1-2 [56.5 kB] Get: 231 http://deb.debian.org/debian bullseye/main i386 r-cran-beeswarm all 0.2.3-4 [68.4 kB] Get: 232 http://deb.debian.org/debian bullseye/main i386 r-cran-brio i386 1.1.1-1 [32.2 kB] Get: 233 http://deb.debian.org/debian bullseye/main i386 r-cran-ps i386 1.5.0-1 [277 kB] Get: 234 http://deb.debian.org/debian bullseye/main i386 r-cran-r6 all 2.5.0-1 [104 kB] Get: 235 http://deb.debian.org/debian bullseye/main i386 r-cran-processx i386 3.4.5-1 [297 kB] Get: 236 http://deb.debian.org/debian bullseye/main i386 r-cran-callr all 3.5.1-1 [386 kB] Get: 237 http://deb.debian.org/debian bullseye/main i386 r-cran-glue i386 1.4.2-1 [139 kB] Get: 238 http://deb.debian.org/debian bullseye/main i386 r-cran-cli all 2.3.0-1 [480 kB] Get: 239 http://deb.debian.org/debian bullseye/main i386 r-cran-colorspace i386 2.0-0+dfsg-1 [1661 kB] Get: 240 http://deb.debian.org/debian bullseye/main i386 r-cran-crayon all 1.4.0-1 [143 kB] Get: 241 http://deb.debian.org/debian bullseye/main i386 r-cran-rprojroot all 2.0.2-1 [114 kB] Get: 242 http://deb.debian.org/debian bullseye/main i386 r-cran-desc all 1.2.0-3 [301 kB] Get: 243 http://deb.debian.org/debian bullseye/main i386 r-cran-diffobj i386 0.3.2-1 [1067 kB] Get: 244 http://deb.debian.org/debian bullseye/main i386 r-cran-digest i386 0.6.27-1 [187 kB] Get: 245 http://deb.debian.org/debian bullseye/main i386 r-cran-rlang i386 0.4.10-1 [1191 kB] Get: 246 http://deb.debian.org/debian bullseye/main i386 r-cran-ellipsis i386 0.3.1-1 [31.9 kB] Get: 247 http://deb.debian.org/debian bullseye/main i386 r-cran-evaluate all 0.14-2 [81.1 kB] Get: 248 http://deb.debian.org/debian bullseye/main i386 r-cran-fansi i386 0.4.2-1 [343 kB] Get: 249 http://deb.debian.org/debian bullseye/main i386 r-cran-farver i386 2.0.3-1+b1 [1391 kB] Get: 250 http://deb.debian.org/debian bullseye/main i386 r-cran-gtable all 0.3.0+dfsg-2 [163 kB] Get: 251 http://deb.debian.org/debian bullseye/main i386 r-cran-jsonlite i386 1.7.2+dfsg-1 [450 kB] Get: 252 http://deb.debian.org/debian bullseye/main i386 r-cran-lifecycle all 0.2.0-2 [93.2 kB] Get: 253 http://deb.debian.org/debian bullseye/main i386 r-cran-magrittr i386 2.0.1-1 [198 kB] Get: 254 http://deb.debian.org/debian bullseye/main i386 r-cran-prettyunits all 1.1.1-2 [39.1 kB] Get: 255 http://deb.debian.org/debian bullseye/main i386 r-cran-withr all 2.4.1-1 [210 kB] Get: 256 http://deb.debian.org/debian bullseye/main i386 r-cran-pkgbuild all 1.2.0-1 [146 kB] Get: 257 http://deb.debian.org/debian bullseye/main i386 r-cran-rstudioapi all 0.13-1 [262 kB] Get: 258 http://deb.debian.org/debian bullseye/main i386 r-cran-pkgload i386 1.1.0-1 [168 kB] Get: 259 http://deb.debian.org/debian bullseye/main i386 r-cran-praise all 1.0.0-4 [20.1 kB] Get: 260 http://deb.debian.org/debian bullseye/main i386 r-cran-utf8 i386 1.1.4-2 [133 kB] Get: 261 http://deb.debian.org/debian bullseye/main i386 r-cran-vctrs i386 0.3.6-1 [1120 kB] Get: 262 http://deb.debian.org/debian bullseye/main i386 r-cran-pillar all 1.4.7-1 [227 kB] Get: 263 http://deb.debian.org/debian bullseye/main i386 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 264 http://deb.debian.org/debian bullseye/main i386 r-cran-tibble i386 3.0.6+dfsg-1 [416 kB] Get: 265 http://deb.debian.org/debian bullseye/main i386 r-cran-rematch2 all 2.1.2-2 [46.3 kB] Get: 266 http://deb.debian.org/debian bullseye/main i386 r-cran-waldo all 0.2.3-2 [79.3 kB] Get: 267 http://deb.debian.org/debian bullseye/main i386 r-cran-testthat i386 3.0.1-1 [1465 kB] Get: 268 http://deb.debian.org/debian bullseye/main i386 r-cran-isoband i386 0.2.3-2 [2101 kB] Get: 269 http://deb.debian.org/debian bullseye/main i386 r-cran-mass i386 7.3-53.1-1 [1116 kB] Get: 270 http://deb.debian.org/debian bullseye/main i386 r-cran-nlme i386 3.1.152-1 [2242 kB] Get: 271 http://deb.debian.org/debian bullseye/main i386 r-cran-mgcv i386 1.8-34-1 [3000 kB] Get: 272 http://deb.debian.org/debian bullseye/main i386 r-cran-labeling all 0.4.2-1 [62.7 kB] Get: 273 http://deb.debian.org/debian bullseye/main i386 r-cran-munsell all 0.5.0-2 [236 kB] Get: 274 http://deb.debian.org/debian bullseye/main i386 r-cran-rcolorbrewer all 1.1-2-3 [54.4 kB] Get: 275 http://deb.debian.org/debian bullseye/main i386 r-cran-viridislite all 0.3.0-4 [59.2 kB] Get: 276 http://deb.debian.org/debian bullseye/main i386 r-cran-scales all 1.1.1-1 [557 kB] Get: 277 http://deb.debian.org/debian bullseye/main i386 r-cran-ggplot2 all 3.3.3+dfsg-1 [3158 kB] Get: 278 http://deb.debian.org/debian bullseye/main i386 r-cran-vipor all 0.4.5-3 [4345 kB] Get: 279 http://deb.debian.org/debian bullseye/main i386 r-cran-ggbeeswarm all 0.6.0-3 [1509 kB] Get: 280 http://deb.debian.org/debian bullseye/main i386 r-cran-gridextra all 2.3-3 [1024 kB] Get: 281 http://deb.debian.org/debian bullseye/main i386 r-cran-viridis all 0.5.1-3 [1846 kB] Fetched 200 MB in 2s (89.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-8_i386.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../001-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../003-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../005-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:i386. Preparing to unpack .../006-libreadline8_8.1-1_i386.deb ... Unpacking libreadline8:i386 (8.1-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../007-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package openssl. Preparing to unpack .../008-openssl_1.1.1k-1_i386.deb ... Unpacking openssl (1.1.1k-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../009-ca-certificates_20210119_all.deb ... Unpacking ca-certificates (20210119) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../010-libmagic-mgc_1%3a5.39-3_i386.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../011-libmagic1_1%3a5.39-3_i386.deb ... Unpacking libmagic1:i386 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../012-file_1%3a5.39-3_i386.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../013-gettext-base_0.21-4_i386.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../015-libsigsegv2_2.13-1_i386.deb ... Unpacking libsigsegv2:i386 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.18-5_i386.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../020-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../021-dctrl-tools_2.24-3_i386.deb ... Unpacking dctrl-tools (2.24-3) ... 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Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../028-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../029-libelf1_0.183-1_i386.deb ... Unpacking libelf1:i386 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../030-dwz_0.13+20210201-1_i386.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:i386. Preparing to unpack .../031-libicu67_67.1-7_i386.deb ... Unpacking libicu67:i386 (67.1-7) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../032-libxml2_2.9.10+dfsg-6.7_i386.deb ... Unpacking libxml2:i386 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../033-gettext_0.21-4_i386.deb ... Unpacking gettext (0.21-4) ... 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Setting up liblapack-dev:i386 (3.9.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode Setting up gfortran-10 (10.2.1-6) ... Setting up libdata-optlist-perl (0.110-1.1) ... Setting up ucf (3.0043) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up libhdf5-103-1:i386 (1.10.6+repack-4) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libncurses5-dev:i386 (6.2+20201114-2) ... Setting up libhdf5-cpp-103-1:i386 (1.10.6+repack-4) ... Setting up libcurl4:i386 (7.74.0-1.3+b1) ... Setting up libx11-6:i386 (2:1.7.2-1) ... Setting up libharfbuzz0b:i386 (2.7.4-1) ... Setting up libmro-compat-perl (0.13-1) ... Setting up libsm6:i386 (2:1.2.3-1) ... Setting up libxmuu1:i386 (2:1.1.2-2+b3) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up libhttp-message-perl (6.28-1) ... Setting up libeval-closure-perl (0.14-1) ... Setting up libhdf5-hl-100:i386 (1.10.6+repack-4) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpaper1:i386 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up libxrender1:i386 (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libxext6:i386 (2:1.3.3-1.1) ... Setting up libwww-curl-perl (4.17-7+b1) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:10.2.1-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up dh-autoreconf (20) ... 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Setting up libhdf5-dev (1.10.6+repack-4) ... update-alternatives: using /usr/lib/i386-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/i386-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libpackage-deprecationmanager-perl (0.17-1.1) ... Setting up libdevel-overloadinfo-perl (0.005-1) ... Setting up libclass-load-xs-perl (0.10-1+b5) ... Setting up libpangoft2-1.0-0:i386 (1.46.2-3) ... Setting up libb-hooks-endofscope-perl (0.24-1.1) ... Setting up libpangocairo-1.0-0:i386 (1.46.2-3) ... Setting up libmoose-perl (2.2014-2) ... Setting up r-base-core (4.0.4-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.4.0-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up r-cran-gtable (0.3.0+dfsg-2) ... Setting up r-cran-labeling (0.4.2-1) ... Setting up r-cran-futile.options (1.0.1-3) ... Setting up r-cran-lattice (0.20-41-1+b1) ... Setting up r-cran-ps (1.5.0-1) ... Setting up r-cran-nlme (3.1.152-1) ... 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Setting up r-cran-beeswarm (0.2.3-4) ... Setting up r-cran-digest (0.6.27-1) ... Setting up r-cran-lambda.r (1.2.4-2) ... Setting up r-cran-evaluate (0.14-2) ... Setting up r-cran-prettyunits (1.1.1-2) ... Setting up r-cran-fansi (0.4.2-1) ... Setting up r-bioc-rhdf5lib (1.12.1+dfsg-3) ... Setting up r-cran-mass (7.3-53.1-1) ... Setting up r-cran-snow (1:0.4.3-2) ... Setting up r-cran-glue (1.4.2-1) ... Setting up r-bioc-rhdf5filters (1.2.0+dfsg2-1) ... Setting up r-cran-cli (2.3.0-1) ... Setting up r-cran-lifecycle (0.2.0-2) ... Setting up r-cran-bitops (1.0-6-5) ... Setting up r-cran-rprojroot (2.0.2-1) ... Setting up r-bioc-zlibbioc (1.36.0+dfsg-1) ... Setting up r-bioc-biobase (2.50.0-1) ... Setting up r-cran-jsonlite (1.7.2+dfsg-1) ... Setting up r-cran-rstudioapi (0.13-1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-utf8 (1.1.4-2) ... Setting up r-cran-colorspace (2.0-0+dfsg-1) ... Setting up r-cran-rcolorbrewer (1.1-2-3) ... Setting up r-bioc-s4vectors (0.28.1-1) ... Setting up r-cran-futile.logger (1.4.3-4) ... Setting up r-cran-gridextra (2.3-3) ... Setting up r-cran-matrix (1.3-2-1) ... Setting up r-cran-irlba (2.3.3-2) ... Setting up r-cran-mgcv (1.8-34-1) ... Setting up r-bioc-iranges (2.24.1-1) ... Setting up dh-r (20210303) ... Setting up r-cran-rcurl (1.98-1.2-1+b1) ... Setting up r-bioc-sparsematrixstats (1.2.1+dfsg-4) ... Setting up r-bioc-delayedarray (0.16.1+dfsg-1) ... Setting up r-cran-ellipsis (0.3.1-1) ... Setting up r-bioc-biocparallel (1.24.1-1) ... Setting up r-cran-callr (3.5.1-1) ... Setting up r-cran-desc (1.2.0-3) ... Setting up r-bioc-rhdf5 (2.34.0+dfsg-1) ... Setting up r-cran-munsell (0.5.0-2) ... Setting up r-cran-rsvd (1.0.3-3) ... Setting up r-bioc-genomeinfodb (1.26.2-2) ... Setting up r-cran-scales (1.1.1-1) ... Setting up r-bioc-beachmat (2.6.4+ds-1) ... Setting up r-bioc-xvector (0.30.0-1) ... Setting up r-cran-pkgbuild (1.2.0-1) ... Setting up r-bioc-biocneighbors (1.8.2+ds-1) ... Setting up r-cran-vctrs (0.3.6-1) ... Setting up r-cran-pillar (1.4.7-1) ... Setting up r-bioc-hdf5array (1.18.1-3) ... Setting up r-cran-pkgload (1.1.0-1) ... Setting up r-bioc-biocsingular (1.6.0+ds-1) ... Setting up r-bioc-genomicranges (1.42.0+dfsg-1) ... Setting up r-cran-tibble (3.0.6+dfsg-1) ... Setting up r-bioc-delayedmatrixstats (1.12.3+ds-1) ... Setting up r-bioc-summarizedexperiment (1.20.0+dfsg-1) ... Setting up r-cran-rematch2 (2.1.2-2) ... Setting up r-cran-waldo (0.2.3-2) ... Setting up r-bioc-singlecellexperiment (1.12.0+ds-1) ... Setting up r-cran-testthat (3.0.1-1) ... Setting up r-cran-isoband (0.2.3-2) ... Setting up r-bioc-scuttle (1.0.4+dfsg-5) ... Setting up r-cran-ggplot2 (3.3.3+dfsg-1) ... Setting up r-cran-viridis (0.5.1-3) ... Setting up r-cran-ggbeeswarm (0.6.0-3) ... Processing triggers for libc-bin (2.31-13) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/r-bioc-scater-1.18.3+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-scater_1.18.3+ds-4_source.changes dpkg-buildpackage: info: source package r-bioc-scater dpkg-buildpackage: info: source version 1.18.3+ds-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install -O--buildsystem=R I: R packages needed for DEP8: testthat, destiny, uwot, nmf, rtsne, dropletutils, pheatmap I: R Package: scater Version: 1.18.3 I: Building using R version 4.0.4-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Sun, 07 Feb 2021 11:34:46 +0100 mkdir -p /build/r-bioc-scater-1.18.3\+ds/debian/r-bioc-scater/usr/lib/R/site-library R CMD INSTALL -l /build/r-bioc-scater-1.18.3\+ds/debian/r-bioc-scater/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 07 Feb 2021 11:34:46 +0100'" * installing *source* package 'scater' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (scater) I: Using r-bioc-singlecellexperiment for Depends:SingleCellExperiment I: Using r-cran-ggplot2 for Depends:ggplot2 I: Using r-cran-testthat for Recommends:testthat I: Using r-bioc-destiny for Recommends:destiny I: Using r-cran-uwot for Recommends:uwot I: Using r-cran-nmf for Recommends:nmf I: Using r-cran-rtsne for Recommends:rtsne I: Using r-bioc-dropletutils for Recommends:dropletutils I: Using r-cran-pheatmap for Recommends:pheatmap I: Using r-bioc-biocstyle for Suggests:BiocStyle I: Using r-bioc-biomart for Suggests:biomaRt I: Using r-cran-cowplot for Suggests:cowplot I: Using r-cran-knitr for Suggests:knitr I: Using r-bioc-scrnaseq for Suggests:scRNAseq I: Using r-cran-robustbase for Suggests:robustbase I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-bioc-biobase for Suggests:Biobase I: Using r-cran-gridextra for Imports:gridExtra I: Using r-cran-matrix for Imports:Matrix I: Using r-bioc-biocgenerics for Imports:BiocGenerics I: Using r-bioc-s4vectors for Imports:S4Vectors I: Using r-bioc-summarizedexperiment for Imports:SummarizedExperiment I: Using r-bioc-delayedarray for Imports:DelayedArray I: Using r-bioc-delayedmatrixstats for Imports:DelayedMatrixStats I: Using r-bioc-biocneighbors for Imports:BiocNeighbors I: Using r-bioc-biocsingular for Imports:BiocSingular I: Using r-bioc-biocparallel for Imports:BiocParallel I: Using r-bioc-scuttle for Imports:scuttle I: Using r-cran-rlang for Imports:rlang I: Using r-cran-ggbeeswarm for Imports:ggbeeswarm I: Using r-cran-viridis for Imports:viridis I: BioConductor API version: r-api-bioc-3.12 I: Use r-bioc-scater as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-scater' in '../r-bioc-scater_1.18.3+ds-4_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../r-bioc-scater_1.18.3+ds-4_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/32799 and its subdirectories I: Current time: Mon Oct 10 23:54:47 -12 2022 I: pbuilder-time-stamp: 1665489287 Wed Sep 8 05:31:48 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Wed Sep 8 05:31:48 UTC 2021 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Wed Sep 8 05:35:41 UTC 2021 I: Deleting $TMPDIR on ionos2-i386.debian.net. Wed Sep 8 05:35:41 UTC 2021 I: r-bioc-scater_1.18.3+ds-4_i386.changes: Format: 1.8 Date: Sun, 07 Feb 2021 11:34:46 +0100 Source: r-bioc-scater Binary: r-bioc-scater Architecture: all Version: 1.18.3+ds-4 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Andreas Tille Description: r-bioc-scater - Single-Cell Analysis Toolkit for Gene Expression Data in R Closes: 982115 Changes: r-bioc-scater (1.18.3+ds-4) unstable; urgency=medium . * Team upload * Skip Testsuite: autopkgtest-pkg-r Closes: #982115 Checksums-Sha1: 837b031c267222c3d06d35d30378f56a33bcf686 534252 r-bioc-scater_1.18.3+ds-4_all.deb ea1d37d1d1e037fe4eead9a154b405dea31bc66b 12573 r-bioc-scater_1.18.3+ds-4_i386.buildinfo Checksums-Sha256: 21d85340c0be62af29b6e13c02dc5d27951358747360ec03618b937096a02d9c 534252 r-bioc-scater_1.18.3+ds-4_all.deb 8200e85ec614a6b97c1fc4cdbb8ca33b1427a77f528b946906ab4b4ca49afbba 12573 r-bioc-scater_1.18.3+ds-4_i386.buildinfo Files: e40234e5e3498f956854566960499128 534252 gnu-r optional r-bioc-scater_1.18.3+ds-4_all.deb 54e69dd99aa46f0456b76b10f2d7a866 12573 gnu-r optional r-bioc-scater_1.18.3+ds-4_i386.buildinfo Wed Sep 8 05:35:52 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.tCr1vBFj1D/r-bioc-scater_1.18.3+ds-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.tCr1vBFj1D/r-bioc-scater_1.18.3+ds-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.tCr1vBFj1D/r-bioc-scater_1.18.3+ds-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.tCr1vBFj1D/b1/r-bioc-scater_1.18.3+ds-4_i386.changes /srv/reproducible-results/rbuild-debian/tmp.tCr1vBFj1D/b2/r-bioc-scater_1.18.3+ds-4_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.306s) 0.306s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.025s) 0.024s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Wed Sep 8 05:36:10 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Wed Sep 8 05:36:10 UTC 2021 I: r-bioc-scater from bullseye built successfully and reproducibly on i386. Wed Sep 8 05:36:11 UTC 2021 I: Submitting .buildinfo files to external archives: Wed Sep 8 05:36:11 UTC 2021 I: Submitting 16K b1/r-bioc-scater_1.18.3+ds-4_i386.buildinfo.asc Wed Sep 8 05:36:12 UTC 2021 I: Submitting 16K b2/r-bioc-scater_1.18.3+ds-4_i386.buildinfo.asc Wed Sep 8 05:36:13 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Sep 8 05:36:13 UTC 2021 I: Done submitting .buildinfo files. Wed Sep 8 05:36:13 UTC 2021 I: Removing signed r-bioc-scater_1.18.3+ds-4_i386.buildinfo.asc files: removed './b1/r-bioc-scater_1.18.3+ds-4_i386.buildinfo.asc' removed './b2/r-bioc-scater_1.18.3+ds-4_i386.buildinfo.asc'