Sat Jan 13 20:06:24 UTC 2024 I: starting to build python-pybedtools/bullseye/i386 on jenkins on '2024-01-13 20:04' Sat Jan 13 20:06:24 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_3/11456/console.log Sat Jan 13 20:06:24 UTC 2024 I: Downloading source for bullseye/python-pybedtools=0.8.0-5 --2024-01-13 20:06:25-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-pybedtools/python-pybedtools_0.8.0-5.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2531 (2.5K) [text/prs.lines.tag] Saving to: ‘python-pybedtools_0.8.0-5.dsc’ 0K .. 100% 271M=0s 2024-01-13 20:06:25 (271 MB/s) - ‘python-pybedtools_0.8.0-5.dsc’ saved [2531/2531] Sat Jan 13 20:06:25 UTC 2024 I: python-pybedtools_0.8.0-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-pybedtools Binary: pybedtools-bin, python3-pybedtools, python-pybedtools-doc Architecture: any all Version: 0.8.0-5 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Steffen Moeller Homepage: https://daler.github.io/pybedtools/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/python-pybedtools Vcs-Git: https://salsa.debian.org/med-team/python-pybedtools.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 12), dh-python, bedtools, cython3, python3-all-dev, python3-setuptools, python3-pysam, python3-matplotlib, python3-nose, python3-numpy, python3-numpydoc, python3-pandas, python3-psutil, python3-pytest, python3-yaml, python3-tk, python3-sphinx, r-base-core, zlib1g-dev Package-List: pybedtools-bin deb python optional arch=all python-pybedtools-doc deb doc optional arch=all python3-pybedtools deb python optional arch=any Checksums-Sha1: a523e0089a648d0b092d533d0c27cf8bfcbb782c 12445206 python-pybedtools_0.8.0.orig.tar.gz 57752a35d6121e5e37b7cd54af5b5e0aa0469408 31588 python-pybedtools_0.8.0-5.debian.tar.xz Checksums-Sha256: f0d9f24135d13d6d02d5c0d1bded771848d3642b00a2d3c3d86b2a1fcd5ce532 12445206 python-pybedtools_0.8.0.orig.tar.gz b68620883a858b19f00f6506593cd6f2c2b63ddbc2cf804d13190b75c3af4248 31588 python-pybedtools_0.8.0-5.debian.tar.xz Files: 87061105699a4e7eb644f3ef58c268a2 12445206 python-pybedtools_0.8.0.orig.tar.gz 76989bbdd36215e7413cb1d2303d57f9 31588 python-pybedtools_0.8.0-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl7A01URHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtG4iQ/8DmIkibf0joA6WrrYVvsxTzctPjSLx2rC OpnnhqkWLU82GlDHJ3JFZlm077uzUBZ+LaGtsSMGL+sNnQrBsBUyrSYsXaSPXq9k bd4CvBGmniNgPaDXgmCRT8HMkiYVBiUOMk5e24Ru+7WxzjdiaG/RVhOD3LWOmqpb IH0QPNNGK4imTjxPPEEViSbV0N96cPrQJzQGZr9uBJf+giHcphieHzGoPOmB4kSi nBgNgLA5rTl+mbN1uCcQ4muD8fyff57BDaoS2mt4oSVG12xT6kuJUfNvDyNCFq+f cmBE5NFcH7bKG3jy5pf4v+3QLp8OK4REICXgwZf5sUfxBhIrXh0fJP0ckh77XOGd AWMdkV362RdDzR+p+n8nlUOfWmu0+lhKZDtoEyjmAwKPgBSzoEaUIrgeGLec/63O U2O9+QfY3xSI+07EH4Szd8XIiG/ZgAdhyI+MoVJZ9xkV/bifaU31RczBkNYdeFFW Re4XJ3SNV/TRFw7SiiIwvVskKFQnTGKY+PuEzpFb7KRasOkguR/OnOy5vduvrJtN +iIZvwUPXUUKis+HoJ7uPsc5edBmDwVlpdnlXHkuGHswMcf0wryUaNYLppapSbpx m2BfVjV1DpAV4ogoHTy45Y3lW8uccMb1CMqcSrPGnfiqrSR3thQC5tAHZ337a5ix l838ue3y3lg= =gvqu -----END PGP SIGNATURE----- Sat Jan 13 20:06:25 UTC 2024 I: Checking whether the package is not for us Sat Jan 13 20:06:25 UTC 2024 I: Starting 1st build on remote node ionos2-i386.debian.net. Sat Jan 13 20:06:25 UTC 2024 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Sat Jan 13 20:09:28 UTC 2024 I: Deleting $TMPDIR on ionos2-i386.debian.net. W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build I: Current time: Sat Jan 13 08:06:28 -12 2024 I: pbuilder-time-stamp: 1705176388 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-pybedtools_0.8.0-5.dsc] I: copying [./python-pybedtools_0.8.0.orig.tar.gz] I: copying [./python-pybedtools_0.8.0-5.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.862CiE1c/trustedkeys.kbx': General error gpgv: Signature made Sun May 17 06:01:57 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-pybedtools_0.8.0-5.dsc dpkg-source: info: extracting python-pybedtools in python-pybedtools-0.8.0 dpkg-source: info: unpacking python-pybedtools_0.8.0.orig.tar.gz dpkg-source: info: unpacking python-pybedtools_0.8.0-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying define_filenotfounderror_python2.patch dpkg-source: info: applying remove_badges_from_documentation.patch dpkg-source: info: applying parseDebianVersions.patch dpkg-source: info: applying add_missing_shebang.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/14097/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='i386' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='14097' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.NvszfHgl/pbuilderrc_xOqr --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.NvszfHgl/b1 --logfile b1/build.log python-pybedtools_0.8.0-5.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/sbin/chroot' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos2-i386 6.1.0-17-686-pae #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) i686 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Mar 27 2022 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Jan 20 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 7 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 7 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep -rwxr-xr-x 1 root root 71928 Jan 20 2022 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 210488 Jan 25 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip -rwxr-xr-x 1 root root 21916 Nov 7 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Jan 20 2022 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Jan 20 2022 more -rwsr-xr-x 1 root root 50720 Jan 20 2022 mount -rwxr-xr-x 1 root root 13856 Jan 20 2022 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 7 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jan 7 09:24 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Jan 20 2022 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 17 2021 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Jan 20 2022 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Jan 20 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 7 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/14097/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-python, bedtools, cython3, python3-all-dev, python3-setuptools, python3-pysam, python3-matplotlib, python3-nose, python3-numpy, python3-numpydoc, python3-pandas, python3-psutil, python3-pytest, python3-yaml, python3-tk, python3-sphinx, r-base-core, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 17763 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on bedtools; however: Package bedtools is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-nose; however: Package python3-nose is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-numpydoc; however: Package python3-numpydoc is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-psutil; however: Package python3-psutil is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-yaml; however: Package python3-yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-tk; however: Package python3-tk is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on r-base-core; however: Package r-base-core is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} blt{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcurl3-gnutls{a} libcurl4{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhts3{a} libice6{a} libicu67{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblcms2-2{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libnghttp2-14{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpsl5{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libsub-override-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff5{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxss1{a} libxt6{a} libyaml-0-2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} openssl{a} po-debconf{a} python-babel-localedata{a} python-matplotlib-data{a} python3{a} python3-alabaster{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-cycler{a} python3-dateutil{a} python3-dev{a} python3-distutils{a} python3-docutils{a} python3-idna{a} python3-imagesize{a} python3-importlib-metadata{a} python3-iniconfig{a} python3-jinja2{a} python3-kiwisolver{a} python3-lib2to3{a} python3-markupsafe{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-nose{a} python3-numpy{a} python3-numpydoc{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-psutil{a} python3-py{a} python3-pygments{a} python3-pyparsing{a} python3-pysam{a} python3-pytest{a} python3-requests{a} python3-roman{a} python3-setuptools{a} python3-six{a} python3-snowballstemmer{a} python3-sphinx{a} python3-tk{a} python3-toml{a} python3-tz{a} python3-urllib3{a} python3-yaml{a} python3-zipp{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} r-base-core{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tk8.6-blt2.5{a} ttf-bitstream-vera{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xdg-utils{a} xml-core{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libfile-mimeinfo-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libx11-protocol-perl lynx publicsuffix python3-bottleneck python3-bs4 python3-html5lib python3-lxml python3-numexpr python3-odf python3-olefile python3-openpyxl python3-scipy python3-tables python3-xlwt r-base-dev r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 188 newly installed, 0 to remove and 0 not upgraded. Need to get 108 MB of archives. After unpacking 358 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-8+deb11u1 [149 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 libpython3.9-minimal i386 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2+deb11u5 [101 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 python3.9-minimal i386 3.9.2-1 [1956 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 python3-minimal i386 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 mailcap all 3.69 [31.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 mime-support all 3.66 [10.9 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 tzdata all 2021a-1+deb11u10 [286 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 libmpdec3 i386 2.5.1-1 [91.9 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 readline-common all 8.1-1 [73.7 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 libreadline8 i386 8.1-1 [173 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 libpython3.9-stdlib i386 3.9.2-1 [1703 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 python3.9 i386 3.9.2-1 [466 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 libpython3-stdlib i386 3.9.2-3 [21.4 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 python3 i386 3.9.2-3 [37.9 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 sgml-base all 1.30 [15.1 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 openssl i386 1.1.1w-0+deb11u1 [869 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 ca-certificates all 20210119 [158 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3+deb11u1 [273 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3+deb11u1 [135 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3+deb11u1 [69.2 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 ucf all 3.0043 [74.0 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 bedtools i386 2.30.0+dfsg-1 [725 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 libtcl8.6 i386 8.6.11+dfsg-1 [1082 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libpng16-16 i386 1.6.37-3 [303 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 libfreetype6 i386 2.10.4+dfsg-1+deb11u1 [430 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 fontconfig-config all 2.13.1-4.2 [281 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 libfontconfig1 i386 2.13.1-4.2 [358 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 libmd0 i386 1.0.3-3 [28.9 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 libbsd0 i386 0.11.3-1+deb11u1 [111 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 libxcb1 i386 1.14-3 [144 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 libx11-data all 2:1.7.2-1+deb11u1 [311 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 libx11-6 i386 2:1.7.2-1+deb11u1 [796 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 libxrender1 i386 1:0.9.10-1 [34.1 kB] Get: 52 http://deb.debian.org/debian bullseye/main i386 libxft2 i386 2.3.2-2 [58.2 kB] Get: 53 http://deb.debian.org/debian bullseye/main i386 libxext6 i386 2:1.3.3-1.1 [55.2 kB] Get: 54 http://deb.debian.org/debian bullseye/main i386 x11-common all 1:7.7+22 [252 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 libxss1 i386 1:1.2.3-1 [18.1 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 libtk8.6 i386 8.6.11-2 [825 kB] Get: 57 http://deb.debian.org/debian bullseye/main i386 tk8.6-blt2.5 i386 2.5.3+dfsg-4.1 [622 kB] Get: 58 http://deb.debian.org/debian bullseye/main i386 blt i386 2.5.3+dfsg-4.1 [14.9 kB] Get: 59 http://deb.debian.org/debian bullseye/main i386 cython3 i386 0.29.21-3+b1 [1303 kB] Get: 60 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 61 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 62 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 63 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 64 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 65 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 66 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 67 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 68 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 69 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-7 [8775 kB] Get: 70 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7+deb11u4 [728 kB] Get: 71 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 72 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 73 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 74 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 75 http://deb.debian.org/debian bullseye/main i386 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 76 http://deb.debian.org/debian bullseye/main i386 python3-distutils all 3.9.2-1 [143 kB] Get: 77 http://deb.debian.org/debian bullseye/main i386 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 78 http://deb.debian.org/debian bullseye/main i386 xml-core all 0.18+nmu1 [23.8 kB] Get: 79 http://deb.debian.org/debian bullseye/main i386 docutils-common all 0.16+dfsg-4 [129 kB] Get: 80 http://deb.debian.org/debian bullseye/main i386 fontconfig i386 2.13.1-4.2 [417 kB] Get: 81 http://deb.debian.org/debian bullseye/main i386 fonts-lyx all 2.3.6-1 [205 kB] Get: 82 http://deb.debian.org/debian bullseye/main i386 libblas3 i386 3.9.0-3+deb11u1 [147 kB] Get: 83 http://deb.debian.org/debian bullseye/main i386 libpixman-1-0 i386 0.40.0-1.1~deb11u1 [545 kB] Get: 84 http://deb.debian.org/debian bullseye/main i386 libxcb-render0 i386 1.14-3 [112 kB] Get: 85 http://deb.debian.org/debian bullseye/main i386 libxcb-shm0 i386 1.14-3 [102 kB] Get: 86 http://deb.debian.org/debian bullseye/main i386 libcairo2 i386 1.16.0-5 [746 kB] Get: 87 http://deb.debian.org/debian bullseye/main i386 libsasl2-modules-db i386 2.1.27+dfsg-2.1+deb11u1 [70.1 kB] Get: 88 http://deb.debian.org/debian bullseye/main i386 libsasl2-2 i386 2.1.27+dfsg-2.1+deb11u1 [110 kB] Get: 89 http://deb.debian.org/debian bullseye/main i386 libldap-2.4-2 i386 2.4.57+dfsg-3+deb11u1 [244 kB] Get: 90 http://deb.debian.org/debian bullseye/main i386 libnghttp2-14 i386 1.43.0-1 [85.7 kB] Get: 91 http://deb.debian.org/debian bullseye/main i386 libpsl5 i386 0.21.0-1.2 [57.9 kB] Get: 92 http://deb.debian.org/debian bullseye/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 93 http://deb.debian.org/debian bullseye/main i386 libssh2-1 i386 1.9.0-2 [164 kB] Get: 94 http://deb.debian.org/debian bullseye/main i386 libcurl3-gnutls i386 7.74.0-1.3+deb11u9 [374 kB] Get: 95 http://deb.debian.org/debian bullseye/main i386 libcurl4 i386 7.74.0-1.3+deb11u9 [377 kB] Get: 96 http://deb.debian.org/debian bullseye/main i386 libdatrie1 i386 0.2.13-1 [44.5 kB] Get: 97 http://deb.debian.org/debian bullseye/main i386 libdeflate0 i386 1.7-1 [48.4 kB] Get: 98 http://deb.debian.org/debian bullseye/main i386 libexpat1-dev i386 2.2.10-2+deb11u5 [149 kB] Get: 99 http://deb.debian.org/debian bullseye/main i386 libfribidi0 i386 1.0.8-2+deb11u1 [65.6 kB] Get: 100 http://deb.debian.org/debian bullseye/main i386 libgfortran5 i386 10.2.1-6 [643 kB] Get: 101 http://deb.debian.org/debian bullseye/main i386 libglib2.0-0 i386 2.66.8-1 [1437 kB] Get: 102 http://deb.debian.org/debian bullseye/main i386 libgraphite2-3 i386 1.3.14-1 [84.0 kB] Get: 103 http://deb.debian.org/debian bullseye/main i386 libharfbuzz0b i386 2.7.4-1 [1490 kB] Get: 104 http://deb.debian.org/debian bullseye/main i386 libhts3 i386 1.11-4 [408 kB] Get: 105 http://deb.debian.org/debian bullseye/main i386 libice6 i386 2:1.0.10-1 [60.8 kB] Get: 106 http://deb.debian.org/debian bullseye/main i386 libimagequant0 i386 2.12.2-1.1 [32.4 kB] Get: 107 http://deb.debian.org/debian bullseye/main i386 libjbig0 i386 2.1-3.1+b2 [31.5 kB] Get: 108 http://deb.debian.org/debian bullseye/main i386 libjpeg62-turbo i386 1:2.0.6-4 [160 kB] Get: 109 http://deb.debian.org/debian bullseye/main i386 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 110 http://deb.debian.org/debian bullseye/main i386 libjs-jquery-ui all 1.12.1+dfsg-8+deb11u1 [232 kB] Get: 111 http://deb.debian.org/debian bullseye/main i386 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 112 http://deb.debian.org/debian bullseye/main i386 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 113 http://deb.debian.org/debian bullseye/main i386 liblapack3 i386 3.9.0-3+deb11u1 [1960 kB] Get: 114 http://deb.debian.org/debian bullseye/main i386 liblcms2-2 i386 2.12~rc1-2 [161 kB] Get: 115 http://deb.debian.org/debian bullseye/main i386 libthai-data all 0.1.28-3 [170 kB] Get: 116 http://deb.debian.org/debian bullseye/main i386 libthai0 i386 0.1.28-3 [55.3 kB] Get: 117 http://deb.debian.org/debian bullseye/main i386 libpango-1.0-0 i386 1.46.2-3 [197 kB] Get: 118 http://deb.debian.org/debian bullseye/main i386 libpangoft2-1.0-0 i386 1.46.2-3 [65.1 kB] Get: 119 http://deb.debian.org/debian bullseye/main i386 libpangocairo-1.0-0 i386 1.46.2-3 [51.9 kB] Get: 120 http://deb.debian.org/debian bullseye/main i386 libpaper1 i386 1.1.28+b1 [21.7 kB] Get: 121 http://deb.debian.org/debian bullseye/main i386 libpaper-utils i386 1.1.28+b1 [18.6 kB] Get: 122 http://deb.debian.org/debian bullseye/main i386 libpython3.9 i386 3.9.2-1 [1715 kB] Get: 123 http://deb.debian.org/debian bullseye/main i386 libpython3.9-dev i386 3.9.2-1 [3822 kB] Get: 124 http://deb.debian.org/debian bullseye/main i386 libpython3-dev i386 3.9.2-3 [21.7 kB] Get: 125 http://deb.debian.org/debian bullseye/main i386 libpython3-all-dev i386 3.9.2-3 [1068 B] Get: 126 http://deb.debian.org/debian bullseye/main i386 libsm6 i386 2:1.2.3-1 [35.7 kB] Get: 127 http://deb.debian.org/debian bullseye/main i386 libwebp6 i386 0.6.1-2.1+deb11u2 [269 kB] Get: 128 http://deb.debian.org/debian bullseye/main i386 libtiff5 i386 4.2.0-1+deb11u4 [305 kB] Get: 129 http://deb.debian.org/debian bullseye/main i386 libwebpdemux2 i386 0.6.1-2.1+deb11u2 [88.2 kB] Get: 130 http://deb.debian.org/debian bullseye/main i386 libwebpmux3 i386 0.6.1-2.1+deb11u2 [99.0 kB] Get: 131 http://deb.debian.org/debian bullseye/main i386 libxt6 i386 1:1.2.0-1 [195 kB] Get: 132 http://deb.debian.org/debian bullseye/main i386 libyaml-0-2 i386 0.2.2-1 [51.7 kB] Get: 133 http://deb.debian.org/debian bullseye/main i386 python-babel-localedata all 2.8.0+dfsg.1-7 [4997 kB] Get: 134 http://deb.debian.org/debian bullseye/main i386 python-matplotlib-data all 3.3.4-1 [4153 kB] Get: 135 http://deb.debian.org/debian bullseye/main i386 python3-alabaster all 0.7.8-1.1 [18.6 kB] Get: 136 http://deb.debian.org/debian bullseye/main i386 python3-all i386 3.9.2-3 [1060 B] Get: 137 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2+deb11u2 [194 kB] Get: 138 http://deb.debian.org/debian bullseye/main i386 python3.9-dev i386 3.9.2-1 [515 kB] Get: 139 http://deb.debian.org/debian bullseye/main i386 python3-dev i386 3.9.2-3 [24.8 kB] Get: 140 http://deb.debian.org/debian bullseye/main i386 python3-all-dev i386 3.9.2-3 [1068 B] Get: 141 http://deb.debian.org/debian bullseye/main i386 python3-attr all 20.3.0-1 [52.9 kB] Get: 142 http://deb.debian.org/debian bullseye/main i386 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 143 http://deb.debian.org/debian bullseye/main i386 python3-tz all 2021.1-1 [34.8 kB] Get: 144 http://deb.debian.org/debian bullseye/main i386 python3-babel all 2.8.0+dfsg.1-7 [100 kB] Get: 145 http://deb.debian.org/debian bullseye/main i386 python3-certifi all 2020.6.20-1 [151 kB] Get: 146 http://deb.debian.org/debian bullseye/main i386 python3-chardet all 4.0.0-1 [99.0 kB] Get: 147 http://deb.debian.org/debian bullseye/main i386 python3-six all 1.16.0-2 [17.5 kB] Get: 148 http://deb.debian.org/debian bullseye/main i386 python3-cycler all 0.10.0-3 [8084 B] Get: 149 http://deb.debian.org/debian bullseye/main i386 python3-dateutil all 2.8.1-6 [79.2 kB] Get: 150 http://deb.debian.org/debian bullseye/main i386 python3-roman all 2.0.0-5 [9064 B] Get: 151 http://deb.debian.org/debian bullseye/main i386 python3-docutils all 0.16+dfsg-4 [384 kB] Get: 152 http://deb.debian.org/debian bullseye/main i386 python3-idna all 2.10-1 [37.4 kB] Get: 153 http://deb.debian.org/debian bullseye/main i386 python3-imagesize all 1.2.0-2 [5824 B] Get: 154 http://deb.debian.org/debian bullseye/main i386 python3-more-itertools all 4.2.0-3 [42.7 kB] Get: 155 http://deb.debian.org/debian bullseye/main i386 python3-zipp all 1.0.0-3 [6060 B] Get: 156 http://deb.debian.org/debian bullseye/main i386 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get: 157 http://deb.debian.org/debian bullseye/main i386 python3-iniconfig all 1.1.1-1 [6308 B] Get: 158 http://deb.debian.org/debian bullseye/main i386 python3-markupsafe i386 1.1.1-1+b3 [15.3 kB] Get: 159 http://deb.debian.org/debian bullseye/main i386 python3-jinja2 all 2.11.3-1 [114 kB] Get: 160 http://deb.debian.org/debian bullseye/main i386 python3-kiwisolver i386 1.3.1-1+b1 [58.5 kB] Get: 161 http://deb.debian.org/debian bullseye/main i386 python3-pyparsing all 2.4.7-1 [109 kB] Get: 162 http://deb.debian.org/debian bullseye/main i386 python3-numpy i386 1:1.19.5-1 [3600 kB] Get: 163 http://deb.debian.org/debian bullseye/main i386 python3-pil i386 8.1.2+dfsg-0.3+deb11u1 [445 kB] Get: 164 http://deb.debian.org/debian bullseye/main i386 python3-matplotlib i386 3.3.4-1 [4165 kB] Get: 165 http://deb.debian.org/debian bullseye/main i386 python3-nose all 1.3.7-7 [133 kB] Get: 166 http://deb.debian.org/debian bullseye/main i386 sphinx-common all 3.4.3-2 [578 kB] Get: 167 http://deb.debian.org/debian bullseye/main i386 python3-packaging all 20.9-2 [33.5 kB] Get: 168 http://deb.debian.org/debian bullseye/main i386 python3-pygments all 2.7.1+dfsg-2.1 [657 kB] Get: 169 http://deb.debian.org/debian bullseye/main i386 python3-urllib3 all 1.26.5-1~exp1 [114 kB] Get: 170 http://deb.debian.org/debian bullseye/main i386 python3-requests all 2.25.1+dfsg-2 [69.3 kB] Get: 171 http://deb.debian.org/debian bullseye/main i386 python3-snowballstemmer all 2.1.0-1 [58.7 kB] Get: 172 http://deb.debian.org/debian bullseye/main i386 python3-sphinx all 3.4.3-2 [545 kB] Get: 173 http://deb.debian.org/debian bullseye/main i386 python3-numpydoc all 1.1.0-3 [40.0 kB] Get: 174 http://deb.debian.org/debian bullseye/main i386 python3-pandas-lib i386 1.1.5+dfsg-2 [3182 kB] Get: 175 http://deb.debian.org/debian bullseye/main i386 python3-pandas all 1.1.5+dfsg-2 [2096 kB] Get: 176 http://deb.debian.org/debian bullseye/main i386 python3-pluggy all 0.13.0-6 [22.3 kB] Get: 177 http://deb.debian.org/debian bullseye/main i386 python3-psutil i386 5.8.0-1 [185 kB] Get: 178 http://deb.debian.org/debian bullseye/main i386 python3-py all 1.10.0-1 [94.2 kB] Get: 179 http://deb.debian.org/debian bullseye/main i386 python3-pysam i386 0.15.4+ds-3+b2 [1571 kB] Get: 180 http://deb.debian.org/debian bullseye/main i386 python3-toml all 0.10.1-1 [15.9 kB] Get: 181 http://deb.debian.org/debian bullseye/main i386 python3-pytest all 6.0.2-2 [211 kB] Get: 182 http://deb.debian.org/debian bullseye/main i386 python3-setuptools all 52.0.0-4 [366 kB] Get: 183 http://deb.debian.org/debian bullseye/main i386 python3-tk i386 3.9.2-1 [101 kB] Get: 184 http://deb.debian.org/debian bullseye/main i386 python3-yaml i386 5.3.1-5 [127 kB] Get: 185 http://deb.debian.org/debian bullseye/main i386 zip i386 3.0-12 [240 kB] Get: 186 http://deb.debian.org/debian bullseye/main i386 unzip i386 6.0-26+deb11u1 [172 kB] Get: 187 http://deb.debian.org/debian bullseye/main i386 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 188 http://deb.debian.org/debian bullseye/main i386 r-base-core i386 4.0.4-1 [25.1 MB] Fetched 108 MB in 12s (9026 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17763 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8+deb11u1_i386.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../1-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. 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Setting up libbrotli1:i386 (1.0.9-2+b2) ... Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libnghttp2-14:i386 (1.43.0-1) ... Setting up libmagic1:i386 (1:5.39-3+deb11u1) ... Setting up libdeflate0:i386 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3+deb11u1) ... Setting up libjbig0:i386 (2.1-3.1+b2) ... Setting up python-babel-localedata (2.8.0+dfsg.1-7) ... Setting up libsasl2-modules-db:i386 (2.1.27+dfsg-2.1+deb11u1) ... Setting up tzdata (2021a-1+deb11u10) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Jan 13 20:07:10 UTC 2024. Universal Time is now: Sat Jan 13 20:07:10 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-12) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:i386 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libexpat1-dev:i386 (2.2.10-2+deb11u5) ... Setting up libjpeg62-turbo:i386 (1:2.0.6-4) ... Setting up libx11-data (2:1.7.2-1+deb11u1) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libsigsegv2:i386 (2.13-1) ... Setting up libfribidi0:i386 (1.0.8-2+deb11u1) ... Setting up libimagequant0:i386 (2.12.2-1.1) ... Setting up libpng16-16:i386 (1.6.37-3) ... Setting up libtcl8.6:i386 (8.6.11+dfsg-1) ... Setting up autopoint (0.21-4) ... Setting up libwebp6:i386 (0.6.1-2.1+deb11u2) ... Setting up libsasl2-2:i386 (2.1.27+dfsg-2.1+deb11u1) ... Setting up libgfortran5:i386 (10.2.1-6) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-2+deb11u2) ... Setting up libmd0:i386 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libmpdec3:i386 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libthai-data (0.1.28-3) ... Setting up libssh2-1:i386 (1.9.0-2) ... Setting up sgml-base (1.30) ... Setting up libtiff5:i386 (4.2.0-1+deb11u4) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up python-matplotlib-data (3.3.4-1) ... Setting up openssl (1.1.1w-0+deb11u1) ... Setting up libwebpmux3:i386 (0.6.1-2.1+deb11u2) ... Setting up libbsd0:i386 (0.11.3-1+deb11u1) ... Setting up mailcap (3.69) ... Setting up libelf1:i386 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:i386 (2.9.10+dfsg-6.7+deb11u4) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up bedtools (2.30.0+dfsg-1) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libice6:i386 (2:1.0.10-1) ... Setting up libxdmcp6:i386 (1:1.1.2-3) ... Setting up liblapack3:i386 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up libxcb1:i386 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.6-15) ... Setting up libxcb-render0:i386 (1.14-3) ... Setting up libwebpdemux2:i386 (0.6.1-2.1+deb11u2) ... Setting up libreadline8:i386 (8.1-1) ... Setting up libldap-2.4-2:i386 (2.4.57+dfsg-3+deb11u1) ... Setting up m4 (1.4.18-5) ... Setting up libcurl3-gnutls:i386 (7.74.0-1.3+deb11u9) ... Setting up libxcb-shm0:i386 (1.14-3) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libthai0:i386 (0.1.28-3) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libjs-jquery-ui (1.12.1+dfsg-8+deb11u1) ... Setting up libfreetype6:i386 (2.10.4+dfsg-1+deb11u1) ... Setting up ucf (3.0043) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up xml-core (0.18+nmu1) ... Setting up libcurl4:i386 (7.74.0-1.3+deb11u9) ... Setting up libx11-6:i386 (2:1.7.2-1+deb11u1) ... Setting up libharfbuzz0b:i386 (2.7.4-1) ... Setting up libsm6:i386 (2:1.2.3-1) ... Setting up libpython3.9-stdlib:i386 (3.9.2-1) ... Setting up libpython3-stdlib:i386 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpaper1:i386 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up libhts3:i386 (1.11-4) ... Setting up libxrender1:i386 (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:i386 (2:1.3.3-1.1) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libpython3.9:i386 (3.9.2-1) ... Setting up sphinx-common (3.4.3-2) ... Setting up libxt6:i386 (1:1.2.0-1) ... Setting up libxss1:i386 (1:1.2.3-1) ... Setting up libfontconfig1:i386 (2.13.1-4.2) ... Setting up python3.9 (3.9.2-1) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libxft2:i386 (2.3.2-2) ... Setting up libtk8.6:i386 (8.6.11-2) ... Setting up libpango-1.0-0:i386 (1.46.2-3) ... Setting up libpython3.9-dev:i386 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-markupsafe (1.1.1-1+b3) ... Setting up libcairo2:i386 (1.16.0-5) ... Setting up python3-psutil (5.8.0-1) ... Setting up python3-tz (2021.1-1) ... Setting up python3-six (1.16.0-2) ... Setting up python3-pil:i386 (8.1.2+dfsg-0.3+deb11u1) ... Setting up python3-roman (2.0.0-5) ... Setting up python3-jinja2 (2.11.3-1) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-certifi (2020.6.20-1) ... Setting up python3-snowballstemmer (2.1.0-1) ... Setting up python3-cycler (0.10.0-3) ... Setting up python3-kiwisolver (1.3.1-1+b1) ... Setting up python3-idna (2.10-1) ... Setting up cython3 (0.29.21-3+b1) ... Setting up python3-toml (0.10.1-1) ... Setting up python3-urllib3 (1.26.5-1~exp1) ... Setting up python3.9-dev (3.9.2-1) ... Setting up python3-dateutil (2.8.1-6) ... Setting up libpangoft2-1.0-0:i386 (1.46.2-3) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up libpangocairo-1.0-0:i386 (1.46.2-3) ... Setting up python3-imagesize (1.2.0-2) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-iniconfig (1.1.1-1) ... Setting up python3-attr (20.3.0-1) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-4.1) ... Setting up python3-pysam (0.15.4+ds-3+b2) ... Setting up libpython3-dev:i386 (3.9.2-3) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-py (1.10.0-1) ... Setting up python3-babel (2.8.0+dfsg.1-7) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-alabaster (0.7.8-1.1) ... Setting up blt (2.5.3+dfsg-4.1) ... Setting up python3-all (3.9.2-3) ... Setting up python3-yaml (5.3.1-5) ... Setting up python3-tk:i386 (3.9.2-1) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-nose (1.3.7-7) ... Setting up python3-pygments (2.7.1+dfsg-2.1) ... Setting up python3-packaging (20.9-2) ... Setting up python3-chardet (4.0.0-1) ... Setting up libpython3-all-dev:i386 (3.9.2-3) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-requests (2.25.1+dfsg-2) ... Setting up r-base-core (4.0.4-1) ... Creating config file /etc/R/Renviron with new version Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-all-dev (3.9.2-3) ... Setting up python3-matplotlib (3.3.4-1) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up python3-pandas-lib:i386 (1.1.5+dfsg-2) ... Setting up python3-pandas (1.1.5+dfsg-2) ... Setting up python3-pluggy (0.13.0-6) ... Setting up python3-pytest (6.0.2-2) ... Processing triggers for libc-bin (2.31-13+deb11u6) ... Processing triggers for sgml-base (1.30) ... Setting up docutils-common (0.16+dfsg-4) ... Processing triggers for sgml-base (1.30) ... Setting up python3-docutils (0.16+dfsg-4) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-sphinx (3.4.3-2) ... Setting up python3-numpydoc (1.1.0-3) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-pybedtools-0.8.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-pybedtools_0.8.0-5_source.changes dpkg-buildpackage: info: source package python-pybedtools dpkg-buildpackage: info: source version 0.8.0-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with python3,sphinxdoc --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/python-pybedtools-0.8.0' /bin/rm -rf fakehome .eggs .pybuild /bin/rm -rf debian/python3-pybedtools debian/files /bin/rm -rf pybedtools.egg-info /bin/rm -rf pybedtools/scripts/__pycache__/ /bin/rm -rf pybedtools/contrib/__pycache__/ /bin/rm -rf pybedtools/__pycache__/ find pybedtools -name "*.so" -o -name "*.o" | xargs -r rm rm -rf build /bin/rm -rf pybedtools/cbedtools.cpp pybedtools/featurefuncs.cpp find docs/source/autodocs/ -name "*.rst" | xargs -r /bin/rm # dh_auto_clean make[1]: Leaving directory '/build/reproducible-path/python-pybedtools-0.8.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3,sphinxdoc --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/python-pybedtools-0.8.0' python3 setup.py cythonize running cythonize /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/reproducible-path/python-pybedtools-0.8.0/pybedtools/cbedtools.pxd tree = Parsing.p_module(s, pxd, full_module_name) /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/reproducible-path/python-pybedtools-0.8.0/pybedtools/featurefuncs.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling pybedtools/cbedtools.pyx because it changed. Compiling pybedtools/featurefuncs.pyx because it changed. [1/2] Cythonizing pybedtools/cbedtools.pyx [2/2] Cythonizing pybedtools/featurefuncs.pyx dh_auto_build I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/helpers.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/stats.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/paths.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/bedtool.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/parallel.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/filenames.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/settings.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/version.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/__main__.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/logger.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/genome_registry.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/__init__.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools creating /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_scripts.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_issues.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_cbedtools.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_contrib.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_iter.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_gzip_support.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_len_leak.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test1.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/__init__.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/regression_tests.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/tfuncs.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_helpers.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test creating /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/venn_maker.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/bigwig.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/bigbed.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/long_range_interaction.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/plotting.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/__init__.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib copying pybedtools/contrib/intersection_matrix.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib creating /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/annotate.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/peak_pie.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/venn_mpl.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/venn_gchart.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/py_ms_example.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/__init__.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/intron_exon_reads.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts copying pybedtools/scripts/intersection_matrix.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts creating /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/__init__.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data running egg_info creating pybedtools.egg-info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt writing manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' writing manifest file 'pybedtools.egg-info/SOURCES.txt' copying pybedtools/cbedtools.cpp -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/featurefuncs.cpp -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools creating /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include copying pybedtools/include/bedFile.cpp -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include copying pybedtools/include/bedFile.h -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include copying pybedtools/include/fileType.cpp -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include copying pybedtools/include/fileType.h -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include copying pybedtools/include/gzstream.cpp -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include copying pybedtools/include/gzstream.h -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include copying pybedtools/include/lineFileUtilities.h -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include copying pybedtools/test/data/a.links.html -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/small.bam -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test.fa -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/v.vcf -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg38-problem.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/venn.c.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/y.bam -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/bedpe.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.50.200.bam.bai -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.gff -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg38-base.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.igv_script -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/snps.bed.gz -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/164.gtf -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/venn.b.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/hg19.gff -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.50.200.bam -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_peaks.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/vcf-stderr-test.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.sorted.bam.bai -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.1.100.bam -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/bedpe2.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/1000genomes-example.vcf -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.gff.gz -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/democonfig.yaml -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/x.bam -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/x.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/reads.bam -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.1.100.bam.bai -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/issue_121.bam -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.bam -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_bedpe.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/tag_test2.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.othersort.bam -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/tag_test1.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/small.fastq -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/vcf-stderr-test.vcf -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/gdc.sorted.bam -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/mm9.bed12 -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test_tsses.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/m1.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/expand_test.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/exons.gff -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/test.fa.fai -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/d.gff -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/c.gff -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/b.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/a.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/multibamcov_test.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data copying pybedtools/featurefuncs.pyx -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/_Window.pyx -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/cbedtools.pyx -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/cbedtools.pxd -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools copying pybedtools/test/gchart-expected.png -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/mpl-expected.png -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/prevent_open_file_regression -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_cases.yaml -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_merge215.yaml -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_merge227.yaml -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_shuffle215.yaml -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/test/test_shuffle227.yaml -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test copying pybedtools/scripts/pybedtools -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts creating /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts/examples copying pybedtools/scripts/examples/pbt_plotting_example.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts/examples running build_ext building 'pybedtools.cbedtools' extension creating build creating build/temp.linux-i386-3.9 creating build/temp.linux-i386-3.9/pybedtools creating build/temp.linux-i386-3.9/pybedtools/include i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/cbedtools.cpp -o build/temp.linux-i386-3.9/pybedtools/cbedtools.o i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/bedFile.cpp -o build/temp.linux-i386-3.9/pybedtools/include/bedFile.o i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/fileType.cpp -o build/temp.linux-i386-3.9/pybedtools/include/fileType.o i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/gzstream.cpp -o build/temp.linux-i386-3.9/pybedtools/include/gzstream.o i686-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/pybedtools/cbedtools.o build/temp.linux-i386-3.9/pybedtools/include/bedFile.o build/temp.linux-i386-3.9/pybedtools/include/fileType.o build/temp.linux-i386-3.9/pybedtools/include/gzstream.o -lstdc++ -lz -o /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/cbedtools.cpython-39-i386-linux-gnu.so building 'pybedtools.featurefuncs' extension i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/featurefuncs.cpp -o build/temp.linux-i386-3.9/pybedtools/featurefuncs.o i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/bedFile.cpp -o build/temp.linux-i386-3.9/pybedtools/include/bedFile.o i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/fileType.cpp -o build/temp.linux-i386-3.9/pybedtools/include/fileType.o i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/gzstream.cpp -o build/temp.linux-i386-3.9/pybedtools/include/gzstream.o i686-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/pybedtools/featurefuncs.o build/temp.linux-i386-3.9/pybedtools/include/bedFile.o build/temp.linux-i386-3.9/pybedtools/include/fileType.o build/temp.linux-i386-3.9/pybedtools/include/gzstream.o -lstdc++ -lz -o /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/featurefuncs.cpython-39-i386-linux-gnu.so running build_scripts creating build/scripts-3.9 copying and adjusting pybedtools/scripts/venn_gchart.py -> build/scripts-3.9 copying and adjusting pybedtools/scripts/venn_mpl.py -> build/scripts-3.9 copying and adjusting pybedtools/scripts/annotate.py -> build/scripts-3.9 copying and adjusting pybedtools/scripts/peak_pie.py -> build/scripts-3.9 copying and adjusting pybedtools/scripts/intersection_matrix.py -> build/scripts-3.9 copying and adjusting pybedtools/scripts/intron_exon_reads.py -> build/scripts-3.9 copying and adjusting pybedtools/scripts/examples/pbt_plotting_example.py -> build/scripts-3.9 copying pybedtools/scripts/pybedtools -> build/scripts-3.9 changing mode of build/scripts-3.9/venn_gchart.py from 644 to 755 changing mode of build/scripts-3.9/venn_mpl.py from 644 to 755 changing mode of build/scripts-3.9/annotate.py from 644 to 755 changing mode of build/scripts-3.9/peak_pie.py from 644 to 755 changing mode of build/scripts-3.9/intersection_matrix.py from 644 to 755 changing mode of build/scripts-3.9/intron_exon_reads.py from 644 to 755 changing mode of build/scripts-3.9/pbt_plotting_example.py from 644 to 755 changing mode of build/scripts-3.9/pybedtools from 644 to 755 python3 setup.py develop --user running develop running egg_info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' writing manifest file 'pybedtools.egg-info/SOURCES.txt' running build_ext building 'pybedtools.cbedtools' extension creating build/temp.linux-i686-3.9 creating build/temp.linux-i686-3.9/pybedtools creating build/temp.linux-i686-3.9/pybedtools/include i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/cbedtools.cpp -o build/temp.linux-i686-3.9/pybedtools/cbedtools.o i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/bedFile.cpp -o build/temp.linux-i686-3.9/pybedtools/include/bedFile.o i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/fileType.cpp -o build/temp.linux-i686-3.9/pybedtools/include/fileType.o i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/gzstream.cpp -o build/temp.linux-i686-3.9/pybedtools/include/gzstream.o i686-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-3.9/pybedtools/cbedtools.o build/temp.linux-i686-3.9/pybedtools/include/bedFile.o build/temp.linux-i686-3.9/pybedtools/include/fileType.o build/temp.linux-i686-3.9/pybedtools/include/gzstream.o -lstdc++ -lz -o /build/reproducible-path/python-pybedtools-0.8.0/pybedtools/cbedtools.cpython-39-i386-linux-gnu.so building 'pybedtools.featurefuncs' extension i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/featurefuncs.cpp -o build/temp.linux-i686-3.9/pybedtools/featurefuncs.o i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/bedFile.cpp -o build/temp.linux-i686-3.9/pybedtools/include/bedFile.o i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/fileType.cpp -o build/temp.linux-i686-3.9/pybedtools/include/fileType.o i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Ipybedtools/include/ -I/usr/include/python3.9 -c pybedtools/include/gzstream.cpp -o build/temp.linux-i686-3.9/pybedtools/include/gzstream.o i686-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/python-pybedtools-0.8.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i686-3.9/pybedtools/featurefuncs.o build/temp.linux-i686-3.9/pybedtools/include/bedFile.o build/temp.linux-i686-3.9/pybedtools/include/fileType.o build/temp.linux-i686-3.9/pybedtools/include/gzstream.o -lstdc++ -lz -o /build/reproducible-path/python-pybedtools-0.8.0/pybedtools/featurefuncs.cpython-39-i386-linux-gnu.so Creating /build/reproducible-path/python-pybedtools-0.8.0/fakehome/.local/lib/python3.9/site-packages/pybedtools.egg-link (link to .) Adding pybedtools 0.8.0 to easy-install.pth file Installing venn_gchart.py script to /build/reproducible-path/python-pybedtools-0.8.0/fakehome/.local/bin Installing venn_mpl.py script to /build/reproducible-path/python-pybedtools-0.8.0/fakehome/.local/bin Installing annotate.py script to /build/reproducible-path/python-pybedtools-0.8.0/fakehome/.local/bin Installing peak_pie.py script to /build/reproducible-path/python-pybedtools-0.8.0/fakehome/.local/bin Installing intersection_matrix.py script to /build/reproducible-path/python-pybedtools-0.8.0/fakehome/.local/bin Installing intron_exon_reads.py script to /build/reproducible-path/python-pybedtools-0.8.0/fakehome/.local/bin Installing pbt_plotting_example.py script to /build/reproducible-path/python-pybedtools-0.8.0/fakehome/.local/bin Installing pybedtools script to /build/reproducible-path/python-pybedtools-0.8.0/fakehome/.local/bin Installed /build/reproducible-path/python-pybedtools-0.8.0 Processing dependencies for pybedtools==0.8.0 Searching for six==1.16.0 Best match: six 1.16.0 Adding six 1.16.0 to easy-install.pth file Using /usr/lib/python3/dist-packages Searching for pysam==0.15.4 Best match: pysam 0.15.4 Adding pysam 0.15.4 to easy-install.pth file Using /usr/lib/python3/dist-packages Finished processing dependencies for pybedtools==0.8.0 python3 setup.py build_sphinx running build_sphinx Running Sphinx v3.4.3 making output directory... done [autosummary] generating autosummary for: 3-brief-examples.rst, FAQs.rst, autodoc_source.rst, changes.rst, create-a-bedtool-tutorial.rst, default-arguments.rst, each.rst, filtering.rst, flow-of-commands.rst, history.rst, ..., topical-create-a-bedtool.rst, topical-design-principles.rst, topical-documentation-contents.rst, topical-genome.rst, topical-iterators.rst, topical-low-level-ops.rst, topical-random.rst, topical-saving.rst, topical-wrapping.rst, tutorial-contents.rst [autosummary] generating autosummary for: /build/reproducible-path/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.absolute_distance.rst, /build/reproducible-path/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.all_hits.rst, /build/reproducible-path/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.annotate.rst, /build/reproducible-path/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.any_hits.rst, /build/reproducible-path/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.as_intervalfile.rst, /build/reproducible-path/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.at.rst, /build/reproducible-path/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_bed.rst, /build/reproducible-path/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.bam_to_fastq.rst, /build/reproducible-path/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.bed6.rst, /build/reproducible-path/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.bedtool.BedTool.bedpe_to_bam.rst, ..., /build/reproducible-path/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.scripts.venn_gchart.rst, /build/reproducible-path/python-pybedtools-0.8.0/docs/source/autodocs/pybedtools.scripts.venn_mpl.rst, /build/reproducible-path/python-pybedtools-0.8.0/docs/source/pybedtools.featurefuncs.add_color.rst, /build/reproducible-path/python-pybedtools-0.8.0/docs/source/pybedtools.featurefuncs.bedgraph_scale.rst, /build/reproducible-path/python-pybedtools-0.8.0/docs/source/pybedtools.featurefuncs.extend_fields.rst, /build/reproducible-path/python-pybedtools-0.8.0/docs/source/pybedtools.featurefuncs.five_prime.rst, /build/reproducible-path/python-pybedtools-0.8.0/docs/source/pybedtools.featurefuncs.greater_than.rst, /build/reproducible-path/python-pybedtools-0.8.0/docs/source/pybedtools.featurefuncs.less_than.rst, /build/reproducible-path/python-pybedtools-0.8.0/docs/source/pybedtools.featurefuncs.normalized_to_length.rst, /build/reproducible-path/python-pybedtools-0.8.0/docs/source/pybedtools.featurefuncs.three_prime.rst building [mo]: targets for 0 po files that are out of date building [html]: targets for 48 source files that are out of date updating environment: [new config] 163 added, 0 changed, 0 removed reading sources... 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The HTML pages are in build/sphinx/html. make[1]: Leaving directory '/build/reproducible-path/python-pybedtools-0.8.0' dh_auto_test -O--buildsystem=pybuild create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_installdirs -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools running install running build running build_py copying pybedtools/version.py -> /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools running egg_info writing pybedtools.egg-info/PKG-INFO writing dependency_links to pybedtools.egg-info/dependency_links.txt writing requirements to pybedtools.egg-info/requires.txt writing top-level names to pybedtools.egg-info/top_level.txt reading manifest file 'pybedtools.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'pybedtools' warning: no previously-included files matching '__pycache__' found under directory '*' warning: no previously-included files matching '*.py[co]' found under directory '*' writing manifest file 'pybedtools.egg-info/SOURCES.txt' running build_ext running build_scripts running install_lib creating /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools creating /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr creating /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib creating /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9 creating /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages creating /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools creating /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_merge227.yaml -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_scripts.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_issues.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_shuffle227.yaml -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test creating /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/a.links.html -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/small.bam -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/test.fa -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/v.vcf -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/hg38-problem.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/venn.c.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/y.bam -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/bedpe.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.50.200.bam.bai -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.gff -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/hg38-base.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/a.igv_script -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/snps.bed.gz -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/164.gtf -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/Cp190_Mbn2_Bushey_2009.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/venn.b.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/hg19.gff -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.50.200.bam -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/test_peaks.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/vcf-stderr-test.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.sorted.bam.bai -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/BEAF_Mbn2_Bushey_2009.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.1.100.bam -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/Cp190_Kc_Bushey_2009.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/bedpe2.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/1000genomes-example.vcf -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.gff.gz -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/democonfig.yaml -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/SuHw_Mbn2_Bushey_2009.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/x.bam -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/x.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/reads.bam -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.1.100.bam.bai -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/issue_121.bam -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.bam -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/test_bedpe.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/tag_test2.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.othersort.bam -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/tag_test1.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/small.fastq -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/CTCF_Kc_Bushey_2009.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/vcf-stderr-test.vcf -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/gdc.sorted.bam -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/SuHw_Kc_Bushey_2009.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/mm9.bed12 -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/test_tsses.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/__init__.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/m1.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/expand_test.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/exons.gff -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M.gff.gz -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/test.fa.fai -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/BEAF_Kc_Bushey_2009.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/rmsk.hg18.chr21.small.bed.gz -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/d.gff -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/c.gff -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/b.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/dm3-chr2L-5M-invalid.gff.gz -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/a.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/multibamcov_test.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/data/CTCF_Mbn2_Bushey_2009.bed -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_shuffle215.yaml -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_merge215.yaml -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/prevent_open_file_regression -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_cbedtools.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_contrib.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_iter.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/gchart-expected.png -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_gzip_support.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/mpl-expected.png -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_len_leak.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_cases.yaml -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test1.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/__init__.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/regression_tests.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/tfuncs.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/test/test_helpers.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/featurefuncs.pyx -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools creating /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts/annotate.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts/peak_pie.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts/pybedtools -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts/venn_mpl.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts/venn_gchart.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts creating /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts/examples copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts/examples/pbt_plotting_example.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts/examples copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts/py_ms_example.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts/__init__.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts/intron_exon_reads.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/scripts/intersection_matrix.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/helpers.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/cbedtools.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/stats.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/paths.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/bedtool.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/parallel.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools creating /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib/venn_maker.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib/bigwig.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib/bigbed.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib/long_range_interaction.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib/plotting.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib/__init__.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/contrib/intersection_matrix.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/filenames.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/settings.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/featurefuncs.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/_Window.pyx -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/version.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/__main__.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools creating /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/include copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include/fileType.cpp -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/include copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include/bedFile.cpp -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/include copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include/gzstream.cpp -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/include copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include/lineFileUtilities.h -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/include copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include/bedFile.h -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/include copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include/fileType.h -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/include copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/include/gzstream.h -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/include copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/logger.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/genome_registry.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/cbedtools.pxd -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/cbedtools.pyx -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/cbedtools.cpp -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/__init__.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools copying /build/reproducible-path/python-pybedtools-0.8.0/.pybuild/cpython3_3.9_pybedtools/build/pybedtools/featurefuncs.cpp -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test_scripts.py to test_scripts.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test_issues.py to test_issues.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/data/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test_cbedtools.py to test_cbedtools.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test_contrib.py to test_contrib.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test_iter.py to test_iter.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test_gzip_support.py to test_gzip_support.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test_len_leak.py to test_len_leak.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test1.py to test1.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/regression_tests.py to regression_tests.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/tfuncs.py to tfuncs.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/test/test_helpers.py to test_helpers.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts/annotate.py to annotate.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts/peak_pie.py to peak_pie.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts/venn_mpl.py to venn_mpl.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts/venn_gchart.py to venn_gchart.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts/examples/pbt_plotting_example.py to pbt_plotting_example.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts/py_ms_example.py to py_ms_example.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts/intron_exon_reads.py to intron_exon_reads.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/scripts/intersection_matrix.py to intersection_matrix.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/helpers.py to helpers.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/stats.py to stats.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/paths.py to paths.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/bedtool.py to bedtool.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/parallel.py to parallel.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib/venn_maker.py to venn_maker.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib/bigwig.py to bigwig.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib/bigbed.py to bigbed.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib/long_range_interaction.py to long_range_interaction.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib/plotting.py to plotting.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/contrib/intersection_matrix.py to intersection_matrix.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/filenames.py to filenames.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/settings.py to settings.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/version.py to version.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/__main__.py to __main__.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/logger.py to logger.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/genome_registry.py to genome_registry.cpython-39.pyc byte-compiling /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools/__init__.py to __init__.cpython-39.pyc running install_egg_info Copying pybedtools.egg-info to /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/lib/python3.9/dist-packages/pybedtools-0.8.0.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin copying build/scripts-3.9/annotate.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin copying build/scripts-3.9/peak_pie.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin copying build/scripts-3.9/pbt_plotting_example.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin copying build/scripts-3.9/pybedtools -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin copying build/scripts-3.9/venn_mpl.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin copying build/scripts-3.9/venn_gchart.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin copying build/scripts-3.9/intron_exon_reads.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin copying build/scripts-3.9/intersection_matrix.py -> /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin changing mode of /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin/annotate.py to 755 changing mode of /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin/peak_pie.py to 755 changing mode of /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin/pbt_plotting_example.py to 755 changing mode of /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin/pybedtools to 755 changing mode of /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin/venn_mpl.py to 755 changing mode of /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin/venn_gchart.py to 755 changing mode of /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin/intron_exon_reads.py to 755 changing mode of /build/reproducible-path/python-pybedtools-0.8.0/debian/python3-pybedtools/usr/bin/intersection_matrix.py to 755 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/python-pybedtools-0.8.0' dh_install rm -f debian/python3-pybedtools/usr/lib/python3*/dist-packages/pybedtools/test/prevent_open_file_regression mkdir -p debian/pybedtools-bin/usr/bin mkdir -p debian/pybedtools-bin/usr/share/doc/pybedtools-bin/examples mv debian/python3-pybedtools/usr/bin/*example* debian/pybedtools-bin/usr/share/doc/pybedtools-bin/examples mv debian/python3-pybedtools/usr/bin/* debian/pybedtools-bin/usr/bin/ rm -fr debian/python3-pybedtools/usr/bin make[1]: Leaving directory '/build/reproducible-path/python-pybedtools-0.8.0' dh_installdocs -O--buildsystem=pybuild dh_installdocs: warning: Cannot auto-detect main package for python-pybedtools-doc. If the default is wrong, please use --doc-main-package dh_sphinxdoc -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installexamples: warning: Cannot auto-detect main package for python-pybedtools-doc. If the default is wrong, please use --doc-main-package dh_python3 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild debian/rules override_dh_fixperms-arch make[1]: Entering directory '/build/reproducible-path/python-pybedtools-0.8.0' dh_fixperms -a chmod -x debian/*/usr/lib/python3/dist-packages/pybedtools/scripts/pybedtools make[1]: Leaving directory '/build/reproducible-path/python-pybedtools-0.8.0' dh_fixperms -O--buildsystem=pybuild -Npython3-pybedtools dh_missing -O--buildsystem=pybuild dh_dwz -O--buildsystem=pybuild dh_strip -O--buildsystem=pybuild dh_makeshlibs -O--buildsystem=pybuild dh_shlibdeps -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-pybedtools: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'pybedtools-bin' in '../pybedtools-bin_0.8.0-5_all.deb'. dpkg-deb: building package 'python3-pybedtools' in '../python3-pybedtools_0.8.0-5_i386.deb'. dpkg-deb: building package 'python3-pybedtools-dbgsym' in '../python3-pybedtools-dbgsym_0.8.0-5_i386.deb'. dpkg-deb: building package 'python-pybedtools-doc' in '../python-pybedtools-doc_0.8.0-5_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-pybedtools_0.8.0-5_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/14097 and its subdirectories I: Current time: Sat Jan 13 08:09:27 -12 2024 I: pbuilder-time-stamp: 1705176567 Sat Jan 13 20:11:29 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Sat Jan 13 20:11:29 UTC 2024 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Sat Jan 13 20:14:11 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. Sat Jan 13 20:14:12 UTC 2024 I: python-pybedtools_0.8.0-5_i386.changes: Format: 1.8 Date: Sun, 17 May 2020 07:51:43 +0200 Source: python-pybedtools Binary: pybedtools-bin python-pybedtools-doc python3-pybedtools python3-pybedtools-dbgsym Architecture: all i386 Version: 0.8.0-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: pybedtools-bin - Scripts produced for pybedtools python-pybedtools-doc - Documentation for pybedtools library python3-pybedtools - Python 3 wrapper around BEDTools for bioinformatics work Closes: 960746 Changes: python-pybedtools (0.8.0-5) unstable; urgency=medium . * Fix binary-all build Closes: #960746 Checksums-Sha1: 1a477f83cde47fb288d225040946cde5ca26df0a 13000 pybedtools-bin_0.8.0-5_all.deb 95220ad6b41b634299f260366f2dcc8ec9050d99 297384 python-pybedtools-doc_0.8.0-5_all.deb 426beec5ffc312471b70bcf1778c9b2d177fe998 10961 python-pybedtools_0.8.0-5_i386.buildinfo 88bf27adf2ae1b25ea4c16178511a8a8b2e93af2 1111080 python3-pybedtools-dbgsym_0.8.0-5_i386.deb 1d2823c8bd21bb0b60a2fcd81f478e54d6f01f16 12139188 python3-pybedtools_0.8.0-5_i386.deb Checksums-Sha256: 2ab43cc6f426f0fd5b1efc4fbaa44d22840442e8348b9e13c1c34a560c4ac759 13000 pybedtools-bin_0.8.0-5_all.deb c24ae5e9e70db81885e71d9bf58683f647c2a49eb86c185ed81deed26f3365ff 297384 python-pybedtools-doc_0.8.0-5_all.deb 663c1f29fc166811ec9af52afbe7f2d49ae43906c7203acbebccaf4933fae39e 10961 python-pybedtools_0.8.0-5_i386.buildinfo e723cfe0d7f3a19a65c75e01b2bd831907bda6fc360836e7a6f0b4df313a860a 1111080 python3-pybedtools-dbgsym_0.8.0-5_i386.deb 5374f55bf9b004d83c342f52ece34c5b43f4f652f7245bfe2b3c346bf4a00a49 12139188 python3-pybedtools_0.8.0-5_i386.deb Files: 9c12bf04996966e5140bf9ca5d4c0ecc 13000 python optional pybedtools-bin_0.8.0-5_all.deb 72947efc9cf4f6a56c657b577b89cf13 297384 doc optional python-pybedtools-doc_0.8.0-5_all.deb f760d13c8dd9f1007732d0ec4ad71bec 10961 python optional python-pybedtools_0.8.0-5_i386.buildinfo 364d1a2f8429504a4cb5a144a37c35ab 1111080 debug optional python3-pybedtools-dbgsym_0.8.0-5_i386.deb 1ba71989ebea6e4421f0024c9842fbe8 12139188 python optional python3-pybedtools_0.8.0-5_i386.deb Sat Jan 13 20:14:12 UTC 2024 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.NvszfHgl/python-pybedtools_0.8.0-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.NvszfHgl/python-pybedtools_0.8.0-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.NvszfHgl/python-pybedtools_0.8.0-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.NvszfHgl/b1/python-pybedtools_0.8.0-5_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.NvszfHgl/b2/python-pybedtools_0.8.0-5_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.378s) 0.378s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.131s) 0.130s 12 calls diffoscope.comparators.binary.FilesystemFile 0.000s 10 calls abc.DotChangesFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Sat Jan 13 20:14:13 UTC 2024 I: diffoscope 240 found no differences in the changes files, and a .buildinfo file also exists. Sat Jan 13 20:14:13 UTC 2024 I: python-pybedtools from bullseye built successfully and reproducibly on i386. Sat Jan 13 20:14:15 UTC 2024 I: Submitting .buildinfo files to external archives: Sat Jan 13 20:14:15 UTC 2024 I: Submitting 12K b1/python-pybedtools_0.8.0-5_i386.buildinfo.asc Sat Jan 13 20:14:17 UTC 2024 I: Submitting 12K b2/python-pybedtools_0.8.0-5_i386.buildinfo.asc Sat Jan 13 20:14:18 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Jan 13 20:14:18 UTC 2024 I: Done submitting .buildinfo files. Sat Jan 13 20:14:18 UTC 2024 I: Removing signed python-pybedtools_0.8.0-5_i386.buildinfo.asc files: removed './b1/python-pybedtools_0.8.0-5_i386.buildinfo.asc' removed './b2/python-pybedtools_0.8.0-5_i386.buildinfo.asc'