Tue Oct 5 15:29:07 UTC 2021 I: starting to build python-intervaltree-bio/bullseye/i386 on jenkins on '2021-10-05 15:29' Tue Oct 5 15:29:07 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_7/17430/console.log Tue Oct 5 15:29:07 UTC 2021 I: Downloading source for bullseye/python-intervaltree-bio=1.0.1-4 --2021-10-05 15:29:07-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-intervaltree-bio/python-intervaltree-bio_1.0.1-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2283 (2.2K) Saving to: ‘python-intervaltree-bio_1.0.1-4.dsc’ 0K .. 100% 45.2M=0s 2021-10-05 15:29:07 (45.2 MB/s) - ‘python-intervaltree-bio_1.0.1-4.dsc’ saved [2283/2283] Tue Oct 5 15:29:07 UTC 2021 I: python-intervaltree-bio_1.0.1-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-intervaltree-bio Binary: python3-intervaltree-bio Architecture: all Version: 1.0.1-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/konstantint/intervaltree-bio Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/python-intervaltree-bio Vcs-Git: https://salsa.debian.org/med-team/python-intervaltree-bio.git Testsuite: autopkgtest Testsuite-Triggers: python3-pytest, quilt Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-intervaltree, python3-pytest Package-List: python3-intervaltree-bio deb python optional arch=all Checksums-Sha1: 42bd07c6bb5f8ecb859a27774991cc7f0b09f8fa 7673 python-intervaltree-bio_1.0.1.orig.tar.gz 9d2ca4d9540cc9a9e6524f56700f7775a6dc2135 18264012 python-intervaltree-bio_1.0.1-4.debian.tar.xz Checksums-Sha256: e419c2561627bd6a44f9481f052c43ec244ee69682d6690743b7b447da4997ae 7673 python-intervaltree-bio_1.0.1.orig.tar.gz 11f5b591530148c7efd0846024d7a41fac9e6c568c7b332a6ef2ce551051129a 18264012 python-intervaltree-bio_1.0.1-4.debian.tar.xz Files: 2f2728780ead61700e2b6b4398a46791 7673 python-intervaltree-bio_1.0.1.orig.tar.gz 6b1c5ce3abf1ce11aa7bf05e229f8b92 18264012 python-intervaltree-bio_1.0.1-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl97M34UHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafFkMg//eLjeWHA/CW4SygEgzIumIntogMOI AnzbaBFoID9ifc7Cm44H3W0tda4VUqtyxzkBCE5Yal4nL+1ad8EXj79GuCOSMqOP 0WNOEvKjAVW2lGI1Vv9UV8Lb/r8NPRSblmHF1qhebibafJY6PEGgnTetJ2cUqVv2 2VN6NQBOzg1sdmUnUB9UuK3C/4Vwr1hSdhI8OpWdN/4F9gKaenh6e3GaiV0w3qKs /a9/CI4DJ4Bviq1hh4S0ppCf8OSmOZP1nJoJmKp3/N9ezESojYE2fJy35CVAJTT9 h6FZgTpniQv2tQwkkujmBUPAdMFhL/GPq/YSd9uOG7Dpgqtpnsj3PCi/445SXgV5 f099zzLPkfitoCrW+I0aveU/7IHObrAz5MpDCZVmj4BDTPg8kCuBbw4lREELVuUJ W7kYk7TUbQ03s79oeCVwF1G5chU/X+fuEK6oYU+eSxAOmWeGeVTSP9CRmZOGGfCN nxlRkz5vwHdF5UTT9xv/N4m/6J6bGbMOpQ5D+6M/d4dYnI9O+B5eZK4KyBnU7dc9 jlw0KLFDES0gABBNPSkCzt88gajEp+hefS8r0tBtz0AX/yGekeLZ6BWOwJuF6nLm za9C+3GuU1KS96FOWlPzVdABWiJ8lUwidyUitFhsqXuS5YoBfl1ARjPr54cKXAs/ cZ+q2dKneZQi9W0= =LHto -----END PGP SIGNATURE----- Tue Oct 5 15:29:07 UTC 2021 I: Checking whether the package is not for us Tue Oct 5 15:29:07 UTC 2021 I: Starting 1st build on remote node ionos12-i386.debian.net. Tue Oct 5 15:29:07 UTC 2021 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Tue Oct 5 15:30:47 UTC 2021 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Oct 5 03:29:09 -12 2021 I: pbuilder-time-stamp: 1633447749 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-intervaltree-bio_1.0.1-4.dsc] I: copying [./python-intervaltree-bio_1.0.1.orig.tar.gz] I: copying [./python-intervaltree-bio_1.0.1-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.sROhhV2l/trustedkeys.kbx': General error gpgv: Signature made Mon Oct 5 02:53:50 2020 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-intervaltree-bio_1.0.1-4.dsc dpkg-source: info: extracting python-intervaltree-bio in python-intervaltree-bio-1.0.1 dpkg-source: info: unpacking python-intervaltree-bio_1.0.1.orig.tar.gz dpkg-source: info: unpacking python-intervaltree-bio_1.0.1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying offline-test-data.patch dpkg-source: info: applying disable-doctests.patch dpkg-source: info: applying setup-cfg-deprecation.patch dpkg-source: info: applying 0001-Replace-all-.search-calls-with-.overlap-in-tests-and.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/8510/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='4bb129dd867e45b585c6354677ac2d07' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='8510' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.JHqwgwHntY/pbuilderrc_xGUk --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.JHqwgwHntY/b1 --logfile b1/build.log python-intervaltree-bio_1.0.1-4.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos12-i386 5.10.0-8-686-pae #1 SMP Debian 5.10.46-5 (2021-09-23) i686 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Aug 4 08:25 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 2021 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Jul 28 07:09 more -rwsr-xr-x 1 root root 50720 Jul 28 07:09 mount -rwxr-xr-x 1 root root 13856 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 20 21:26 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Jul 28 07:09 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Jul 28 07:09 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/8510/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-intervaltree, python3-pytest dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-intervaltree; however: Package python3-intervaltree is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libpipeline1{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-attr{a} python3-distutils{a} python3-importlib-metadata{a} python3-iniconfig{a} python3-intervaltree{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pyparsing{a} python3-pytest{a} python3-setuptools{a} python3-six{a} python3-sortedcontainers{a} python3-toml{a} python3-zipp{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pygments wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 25.6 MB of archives. After unpacking 95.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-8 [149 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 libpython3.9-minimal i386 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2 [98.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 python3.9-minimal i386 3.9.2-1 [1956 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 python3-minimal i386 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libmpdec3 i386 2.5.1-1 [91.9 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 libreadline8 i386 8.1-1 [173 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 libpython3.9-stdlib i386 3.9.2-1 [1703 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 python3.9 i386 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 libpython3-stdlib i386 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 python3 i386 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-7 [8775 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 python3-distutils all 3.9.2-1 [143 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 python3-all i386 3.9.2-3 [1060 B] Get: 48 http://deb.debian.org/debian bullseye/main i386 python3-attr all 20.3.0-1 [52.9 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 python3-six all 1.16.0-2 [17.5 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 python3-more-itertools all 4.2.0-3 [42.7 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 python3-zipp all 1.0.0-3 [6060 B] Get: 52 http://deb.debian.org/debian bullseye/main i386 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get: 53 http://deb.debian.org/debian bullseye/main i386 python3-iniconfig all 1.1.1-1 [6308 B] Get: 54 http://deb.debian.org/debian bullseye/main i386 python3-sortedcontainers all 2.1.0-2 [31.4 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 python3-intervaltree all 3.0.2-1.1 [26.3 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 python3-pyparsing all 2.4.7-1 [109 kB] Get: 57 http://deb.debian.org/debian bullseye/main i386 python3-packaging all 20.9-2 [33.5 kB] Get: 58 http://deb.debian.org/debian bullseye/main i386 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 59 http://deb.debian.org/debian bullseye/main i386 python3-pluggy all 0.13.0-6 [22.3 kB] Get: 60 http://deb.debian.org/debian bullseye/main i386 python3-py all 1.10.0-1 [94.2 kB] Get: 61 http://deb.debian.org/debian bullseye/main i386 python3-toml all 0.10.1-1 [15.9 kB] Get: 62 http://deb.debian.org/debian bullseye/main i386 python3-pytest all 6.0.2-2 [211 kB] Get: 63 http://deb.debian.org/debian bullseye/main i386 python3-setuptools all 52.0.0-4 [366 kB] Fetched 25.6 MB in 0s (67.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. 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Setting up libelf1:i386 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:i386 (2.9.10+dfsg-6.7) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libreadline8:i386 (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libpython3.9-stdlib:i386 (3.9.2-1) ... Setting up libpython3-stdlib:i386 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up python3.9 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-sortedcontainers (2.1.0-2) ... Setting up python3-six (1.16.0-2) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-toml (0.10.1-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-iniconfig (1.1.1-1) ... Setting up python3-attr (20.3.0-1) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-intervaltree (3.0.2-1.1) ... Setting up python3-py (1.10.0-1) ... Setting up python3-all (3.9.2-3) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-packaging (20.9-2) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up python3-pluggy (0.13.0-6) ... Setting up python3-pytest (6.0.2-2) ... Processing triggers for libc-bin (2.31-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-intervaltree-bio-1.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-intervaltree-bio_1.0.1-4_source.changes dpkg-buildpackage: info: source package python-intervaltree-bio dpkg-buildpackage: info: source version 1.0.1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/python-intervaltree-bio-1.0.1/.pybuild/cpython3_3.9_intervaltree-bio/build' (and everything under it) 'build/bdist.linux-i386' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/python-intervaltree-bio-1.0.1/.pybuild/cpython3_3.9_intervaltree-bio/build/intervaltree_bio copying intervaltree_bio/__init__.py -> /build/python-intervaltree-bio-1.0.1/.pybuild/cpython3_3.9_intervaltree-bio/build/intervaltree_bio running egg_info creating intervaltree_bio.egg-info writing intervaltree_bio.egg-info/PKG-INFO writing dependency_links to intervaltree_bio.egg-info/dependency_links.txt writing requirements to intervaltree_bio.egg-info/requires.txt writing top-level names to intervaltree_bio.egg-info/top_level.txt writing manifest file 'intervaltree_bio.egg-info/SOURCES.txt' reading manifest file 'intervaltree_bio.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'intervaltree_bio.egg-info/SOURCES.txt' debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-intervaltree-bio-1.0.1' dh_auto_test -- --test-args " --verbose --datadir /build/python-intervaltree-bio-1.0.1/debian/data" I: pybuild base:232: cd /build/python-intervaltree-bio-1.0.1/.pybuild/cpython3_3.9_intervaltree-bio/build; python3.9 -m pytest --verbose --datadir /build/python-intervaltree-bio-1.0.1/debian/data ============================= test session starts ============================== platform linux -- Python 3.9.2, pytest-6.0.2, py-1.10.0, pluggy-0.13.0 -- /usr/bin/python3.9 cachedir: .pytest_cache rootdir: /build/python-intervaltree-bio-1.0.1, configfile: setup.cfg collecting ... collected 4 items tests/genomeintervaltree_test.py::test_knownGene[file:/build/python-intervaltree-bio-1.0.1/debian/data/] PASSED [ 25%] tests/genomeintervaltree_test.py::test_ensGene[file:/build/python-intervaltree-bio-1.0.1/debian/data/] PASSED [ 50%] tests/genomeintervaltree_test.py::test_refGene[file:/build/python-intervaltree-bio-1.0.1/debian/data/] PASSED [ 75%] tests/pickle_test.py::test_pickling PASSED [100%] =============================== warnings summary =============================== .pybuild/cpython3_3.9_intervaltree-bio/build/tests/genomeintervaltree_test.py::test_knownGene[file:///build/python-intervaltree-bio-1.0.1/debian/data/] .pybuild/cpython3_3.9_intervaltree-bio/build/tests/genomeintervaltree_test.py::test_ensGene[file:///build/python-intervaltree-bio-1.0.1/debian/data/] /build/python-intervaltree-bio-1.0.1/.pybuild/cpython3_3.9_intervaltree-bio/build/intervaltree_bio/__init__.py:73: UserWarning: Interval with reversed coordinates (begin >= end) detected when reading data. Interval was automatically fixed to point interval [begin, begin+1). warnings.warn("Interval with reversed coordinates (begin >= end) detected when reading data. Interval was automatically fixed to point interval [begin, begin+1).") -- Docs: https://docs.pytest.org/en/stable/warnings.html =================== 4 passed, 2 warnings in 60.83s (0:01:00) =================== make[1]: Leaving directory '/build/python-intervaltree-bio-1.0.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/python-intervaltree-bio-1.0.1/debian/python3-intervaltree-bio running install running build running build_py running egg_info writing intervaltree_bio.egg-info/PKG-INFO writing dependency_links to intervaltree_bio.egg-info/dependency_links.txt writing requirements to intervaltree_bio.egg-info/requires.txt writing top-level names to intervaltree_bio.egg-info/top_level.txt reading manifest file 'intervaltree_bio.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'intervaltree_bio.egg-info/SOURCES.txt' running install_lib creating /build/python-intervaltree-bio-1.0.1/debian/python3-intervaltree-bio/usr creating /build/python-intervaltree-bio-1.0.1/debian/python3-intervaltree-bio/usr/lib creating /build/python-intervaltree-bio-1.0.1/debian/python3-intervaltree-bio/usr/lib/python3.9 creating /build/python-intervaltree-bio-1.0.1/debian/python3-intervaltree-bio/usr/lib/python3.9/dist-packages creating /build/python-intervaltree-bio-1.0.1/debian/python3-intervaltree-bio/usr/lib/python3.9/dist-packages/intervaltree_bio copying /build/python-intervaltree-bio-1.0.1/.pybuild/cpython3_3.9_intervaltree-bio/build/intervaltree_bio/__init__.py -> /build/python-intervaltree-bio-1.0.1/debian/python3-intervaltree-bio/usr/lib/python3.9/dist-packages/intervaltree_bio creating /build/python-intervaltree-bio-1.0.1/debian/python3-intervaltree-bio/usr/lib/python3.9/dist-packages/intervaltree_bio/__pycache__ copying /build/python-intervaltree-bio-1.0.1/.pybuild/cpython3_3.9_intervaltree-bio/build/intervaltree_bio/__pycache__/__init__.cpython-39.pyc -> /build/python-intervaltree-bio-1.0.1/debian/python3-intervaltree-bio/usr/lib/python3.9/dist-packages/intervaltree_bio/__pycache__ byte-compiling /build/python-intervaltree-bio-1.0.1/debian/python3-intervaltree-bio/usr/lib/python3.9/dist-packages/intervaltree_bio/__init__.py to __init__.cpython-39.pyc running install_egg_info Copying intervaltree_bio.egg-info to /build/python-intervaltree-bio-1.0.1/debian/python3-intervaltree-bio/usr/lib/python3.9/dist-packages/intervaltree_bio-1.0.1.egg-info Skipping SOURCES.txt running install_scripts dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-intervaltree-bio' in '../python3-intervaltree-bio_1.0.1-4_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-intervaltree-bio_1.0.1-4_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/8510 and its subdirectories I: Current time: Tue Oct 5 03:30:46 -12 2021 I: pbuilder-time-stamp: 1633447846 Tue Oct 5 15:30:47 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Tue Oct 5 15:30:47 UTC 2021 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Tue Oct 5 15:31:49 UTC 2021 I: Deleting $TMPDIR on ionos16-i386.debian.net. Tue Oct 5 15:31:50 UTC 2021 I: python-intervaltree-bio_1.0.1-4_i386.changes: Format: 1.8 Date: Mon, 05 Oct 2020 18:44:27 +0530 Source: python-intervaltree-bio Binary: python3-intervaltree-bio Architecture: all Version: 1.0.1-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: python3-intervaltree-bio - Interval tree convenience classes for genomic data -- Python 3 li Closes: 920545 Changes: python-intervaltree-bio (1.0.1-4) unstable; urgency=medium . * Team Upload. [ Olivier Sallou ] * d/tests/control Ignore .pc directory for autopkgtest (Closes: #920545). . [ Afif Elghraoui ] * Remove myself from Uploaders . [ Andreas Tille ] * Add myself to Uploaders * debhelper-compat 12 * Standards-Version: 4.5.0 * Remove trailing whitespace in debian/changelog * Explicitly Depends: python3-intervaltree * Make sure only offline tests are done . [ Nilesh Patra ] * Fix autopkgtests (Closes: #920545) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. Checksums-Sha1: 470d83028178402b1aaaeecd3f469797c042873f 5713 python-intervaltree-bio_1.0.1-4_i386.buildinfo 4ec80fbfc760a7ea2131f3f0e38d66d5d16164c6 8640 python3-intervaltree-bio_1.0.1-4_all.deb Checksums-Sha256: 08601a85b139c14444bf274e8d9c1cc978f792ae862eb9d904f87c21ad54b969 5713 python-intervaltree-bio_1.0.1-4_i386.buildinfo dc6109ada5631ecb71fd33f0b5690e23865f7b016d0c27cf732b6c93202fce91 8640 python3-intervaltree-bio_1.0.1-4_all.deb Files: 528b55dff6571875c3bd3fe2f3c3a840 5713 python optional python-intervaltree-bio_1.0.1-4_i386.buildinfo 318f66f8f119eab1428fc8123f87591b 8640 python optional python3-intervaltree-bio_1.0.1-4_all.deb Tue Oct 5 15:31:51 UTC 2021 I: will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.JHqwgwHntY/python-intervaltree-bio_1.0.1-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.JHqwgwHntY/python-intervaltree-bio_1.0.1-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.JHqwgwHntY/python-intervaltree-bio_1.0.1-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.JHqwgwHntY/b1/python-intervaltree-bio_1.0.1-4_i386.changes /srv/reproducible-results/rbuild-debian/tmp.JHqwgwHntY/b2/python-intervaltree-bio_1.0.1-4_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.262s) 0.262s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.018s) 0.018s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Tue Oct 5 15:31:52 UTC 2021 I: found no differences in the changes files, and a .buildinfo file also exists. Tue Oct 5 15:31:52 UTC 2021 I: python-intervaltree-bio from bullseye built successfully and reproducibly on i386. Tue Oct 5 15:31:53 UTC 2021 I: Submitting .buildinfo files to external archives: Tue Oct 5 15:31:53 UTC 2021 I: Submitting 8.0K b1/python-intervaltree-bio_1.0.1-4_i386.buildinfo.asc Tue Oct 5 15:31:54 UTC 2021 I: Submitting 8.0K b2/python-intervaltree-bio_1.0.1-4_i386.buildinfo.asc Tue Oct 5 15:31:54 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Oct 5 15:31:54 UTC 2021 I: Done submitting .buildinfo files. Tue Oct 5 15:31:54 UTC 2021 I: Removing signed python-intervaltree-bio_1.0.1-4_i386.buildinfo.asc files: removed './b1/python-intervaltree-bio_1.0.1-4_i386.buildinfo.asc' removed './b2/python-intervaltree-bio_1.0.1-4_i386.buildinfo.asc'