Fri Jun 11 11:42:58 UTC 2021 I: starting to build python-freecontact/bullseye/i386 on jenkins on '2021-06-11 11:42' Fri Jun 11 11:42:58 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_6/15290/console.log Fri Jun 11 11:42:58 UTC 2021 I: Downloading source for bullseye/python-freecontact=1.1-5 --2021-06-11 11:42:58-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-freecontact/python-freecontact_1.1-5.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2224 (2.2K) Saving to: ‘python-freecontact_1.1-5.dsc’ 0K .. 100% 150M=0s 2021-06-11 11:42:58 (150 MB/s) - ‘python-freecontact_1.1-5.dsc’ saved [2224/2224] Fri Jun 11 11:42:59 UTC 2021 I: python-freecontact_1.1-5.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-freecontact Binary: python3-freecontact Architecture: any Version: 1.1-5 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille , Alexandre Mestiashvili Homepage: https://rostlab.org/owiki/index.php/FreeContact Standards-Version: 4.4.0 Vcs-Browser: https://salsa.debian.org/med-team/python-freecontact Vcs-Git: https://salsa.debian.org/med-team/python-freecontact.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 12), dh-python, libboost-python-dev, libfreecontact-dev, python3-all-dev Package-List: python3-freecontact deb python optional arch=any Checksums-Sha1: 18a0f44daa9d1a10cdcce0e48cf7b0d914228868 65968 python-freecontact_1.1.orig.tar.gz 730e85a822375df9501904e6bead86e983a7e86f 3976 python-freecontact_1.1-5.debian.tar.xz Checksums-Sha256: 895e06aa9f7878f7fff34b8f851ee361967a3cc1f3b441de32dbcbf1f31aaa85 65968 python-freecontact_1.1.orig.tar.gz 222bdf44f55da6d3a8a2b6d38500b5cf7af98963c446273f34cbceeb6fe41a8d 3976 python-freecontact_1.1-5.debian.tar.xz Files: 17a99d6514c125b4005f0cd494ae81a4 65968 python-freecontact_1.1.orig.tar.gz 02c1ea9846bc30ea59fb3c5172ffec94 3976 python-freecontact_1.1-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl1vdDgRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFdbxAAhdB1PyMj5hqR5zk4NbETD7BT/iZ6FiX3 k7FKclQLLDDLxzUOhTOfEE5vaJ4pk9bir3ecBJME5jN3Kd7+HpXjgTXDlCjV59/O nCi8S9u7WKMBHI6p+xpoIgSqHIdEpUlrNvVOxDgrpzwm51k8cJcsac+L1vPhzw+j ZLethaJYZdWvCyWT+u4ojFP0ubB949YMOk0gjOFzjpTcOSQIgAYOXg1y7Oct9hrh c1xN9eCHbCORakAoyWiIUvYykhlWS4p3794CXwifM991RXguAL6F4aH32IWpcwWT mjZPIqYRxxX4rPc0O/qFpJcCxJkBGlZ7AjZoJMJKVSgdqIZhtaqJxYo5kMYnYnYD eq35tJu5Au//xu1Q7Gl+3zXpFqVD1Hoh12NPJ5HTq2ur3BkZT85JcJB101IyjNeI xbpPkYva2QCXy208ysd6EVHKOdfCPfnQJKg+GbsPnCkqD41AYT8gbejzoHzm6u4R aEJaNtvjPpJrIAkrBmBYWbkrff0F1XO16Zt/Cn81vHKoPRAI5+A0vTLeZwCgzFAv yoEbtBa/lT58vK5sL67vLdVDOK2HVfBxxz1E+fSv4K/YQOsbbQXzOOHkQxrGkROQ eymshwlV6W/Q4uGvN+Qsun7ahJxkjnDpeWhVzxhYOBvRGlDutppiwDAgFNp1gp7X HXPoCFKV3P0= =Ky2d -----END PGP SIGNATURE----- Fri Jun 11 11:42:59 UTC 2021 I: Checking whether the package is not for us Fri Jun 11 11:42:59 UTC 2021 I: Starting 1st build on remote node ionos6-i386.debian.net. Fri Jun 11 11:42:59 UTC 2021 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Fri Jun 11 11:43:43 UTC 2021 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jul 14 06:05:59 -12 2022 I: pbuilder-time-stamp: 1657821959 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-freecontact_1.1-5.dsc] I: copying [./python-freecontact_1.1.orig.tar.gz] I: copying [./python-freecontact_1.1-5.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.frs4IuxJ/trustedkeys.kbx': General error gpgv: Signature made Tue Sep 3 20:22:16 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-freecontact_1.1-5.dsc dpkg-source: info: extracting python-freecontact in python-freecontact-1.1 dpkg-source: info: unpacking python-freecontact_1.1.orig.tar.gz dpkg-source: info: unpacking python-freecontact_1.1-5.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying py3_test_fixes.patch dpkg-source: info: applying py3_boost.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/23905/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=18' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='f19d53a031894944adfd133de0ced563' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='23905' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.altiO3nkMo/pbuilderrc_9iDa --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.altiO3nkMo/b1 --logfile b1/build.log python-freecontact_1.1-5.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos6-i386 4.19.0-16-amd64 #1 SMP Debian 4.19.181-1 (2021-03-19) x86_64 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Feb 24 2021 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Feb 7 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 7 2021 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 2021 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Feb 7 2021 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 7 2021 more -rwsr-xr-x 1 root root 50720 Feb 7 2021 mount -rwxr-xr-x 1 root root 13856 Feb 7 2021 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Feb 24 2021 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 14 03:47 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Feb 7 2021 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 7 2021 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 7 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/23905/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-python, libboost-python-dev, libfreecontact-dev, python3-all-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on libfreecontact-dev; however: Package libfreecontact-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libboost-python-dev{a} libboost-python1.74-dev{a} libboost-python1.74.0{a} libboost1.74-dev{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfreecontact-dev{a} libfreecontact0v5{a} libgfortran5{a} libicu67{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 68 newly installed, 0 to remove and 0 not upgraded. Need to get 44.4 MB of archives. After unpacking 274 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 libpython3.9-minimal i386 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2 [98.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 python3.9-minimal i386 3.9.2-1 [1956 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 python3-minimal i386 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libmpdec3 i386 2.5.1-1 [91.9 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 libreadline8 i386 8.1-1 [173 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 libpython3.9-stdlib i386 3.9.2-1 [1703 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 python3.9 i386 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 libpython3-stdlib i386 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 python3 i386 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-6 [8776 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 python3-distutils all 3.9.2-1 [143 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 libblas3 i386 3.9.0-3 [147 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 libboost1.74-dev i386 1.74.0-9 [9534 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 libboost-python1.74.0 i386 1.74.0-9 [319 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 libpython3.9 i386 3.9.2-1 [1715 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 libexpat1-dev i386 2.2.10-2 [147 kB] Get: 52 http://deb.debian.org/debian bullseye/main i386 libpython3.9-dev i386 3.9.2-1 [3822 kB] Get: 53 http://deb.debian.org/debian bullseye/main i386 libpython3-dev i386 3.9.2-3 [21.7 kB] Get: 54 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 python3.9-dev i386 3.9.2-1 [515 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 57 http://deb.debian.org/debian bullseye/main i386 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 58 http://deb.debian.org/debian bullseye/main i386 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 59 http://deb.debian.org/debian bullseye/main i386 python3-dev i386 3.9.2-3 [24.8 kB] Get: 60 http://deb.debian.org/debian bullseye/main i386 libboost-python1.74-dev i386 1.74.0-9 [344 kB] Get: 61 http://deb.debian.org/debian bullseye/main i386 libboost-python-dev i386 1.74.0.3 [4632 B] Get: 62 http://deb.debian.org/debian bullseye/main i386 libgfortran5 i386 10.2.1-6 [643 kB] Get: 63 http://deb.debian.org/debian bullseye/main i386 liblapack3 i386 3.9.0-3 [1960 kB] Get: 64 http://deb.debian.org/debian bullseye/main i386 libfreecontact0v5 i386 1.0.21-9 [63.7 kB] Get: 65 http://deb.debian.org/debian bullseye/main i386 libfreecontact-dev i386 1.0.21-9 [72.3 kB] Get: 66 http://deb.debian.org/debian bullseye/main i386 libpython3-all-dev i386 3.9.2-3 [1068 B] Get: 67 http://deb.debian.org/debian bullseye/main i386 python3-all i386 3.9.2-3 [1060 B] Get: 68 http://deb.debian.org/debian bullseye/main i386 python3-all-dev i386 3.9.2-3 [1068 B] Fetched 44.4 MB in 1s (67.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. 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Setting up libsigsegv2:i386 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libgfortran5:i386 (10.2.1-6) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libmpdec3:i386 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libboost-python1.74.0 (1.74.0-9) ... Setting up libelf1:i386 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:i386 (2.9.10+dfsg-6.7) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up liblapack3:i386 (3.9.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.21-4) ... Setting up libfreecontact0v5:i386 (1.0.21-9) ... Setting up libtool (2.4.6-15) ... Setting up libreadline8:i386 (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libpython3.9-stdlib:i386 (3.9.2-1) ... Setting up libpython3-stdlib:i386 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfreecontact-dev (1.0.21-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libpython3.9:i386 (3.9.2-1) ... Setting up python3.9 (3.9.2-1) ... Setting up libpython3.9-dev:i386 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3.9-dev (3.9.2-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up libpython3-dev:i386 (3.9.2-3) ... Setting up python3-all (3.9.2-3) ... Setting up libpython3-all-dev:i386 (3.9.2-3) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-all-dev (3.9.2-3) ... Setting up libboost-python1.74-dev (1.74.0-9) ... Setting up libboost-python-dev (1.74.0.3) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/python-freecontact-1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package python-freecontact dpkg-buildpackage: info: source version 1.1-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 dpkg-source: info: using options from python-freecontact-1.1/debian/source/options: --single-debian-patch fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild --builddirectory=/build/python-freecontact-1.1/builddir dh_auto_clean -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_auto_clean: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --clean -i python{version} -p 3.9 I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/python-freecontact-1.1/.pybuild/cpython3_3.9_freecontact/build' (and everything under it) 'build/bdist.linux-i386' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_clean -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-freecontact.substvars debian/files rm -fr -- debian/python3-freecontact/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules build dh build --with python3 --buildsystem=pybuild --builddirectory=/build/python-freecontact-1.1/builddir dh_update_autotools_config -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_autoreconf -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_auto_configure -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_auto_configure: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --configure -i python{version} -p 3.9 I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_auto_build: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --build -i python{version} -p 3.9 I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_ext building 'freecontact' extension creating build creating build/temp.linux-i386-3.9 creating build/temp.linux-i386-3.9/src i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-freecontact-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c src/freecontact.cpp -o build/temp.linux-i386-3.9/src/freecontact.o In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/python/converter/shared_ptr_to_python.hpp:12, from /usr/include/boost/python/converter/arg_to_python.hpp:15, from /usr/include/boost/python/call.hpp:15, from /usr/include/boost/python/object_core.hpp:14, from /usr/include/boost/python/args.hpp:22, from /usr/include/boost/python.hpp:11, from src/freecontact.cpp:17: /usr/include/boost/bind.hpp:36:1: note: '#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.' 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/detail/iterator.hpp:13:1: note: '#pragma message: This header is deprecated. Use instead.' 13 | BOOST_HEADER_DEPRECATED("") | ^~~~~~~~~~~~~~~~~~~~~~~ src/freecontact.cpp: In function 'void input_parset_t(boost::python::dict&, freecontact::parset_t&)': src/freecontact.cpp:157:38: warning: '*((void*)& +12)' may be used uninitialized in this function [-Wmaybe-uninitialized] 157 | if(__kw.has_key("rho")) __ps.rho = bp::extract(__kw["rho"]); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/freecontact.cpp:153:58: warning: '*((void*)& +12)' may be used uninitialized in this function [-Wmaybe-uninitialized] 153 | if(__kw.has_key("shrink_lambda")) __ps.shrink_lambda = bp::extract(__kw["shrink_lambda"]); | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/freecontact.cpp:151:56: warning: '*((void*)& +12)' may be used uninitialized in this function [-Wmaybe-uninitialized] 151 | if(__kw.has_key("pscnt_weight")) __ps.pscnt_weight = bp::extract(__kw["pscnt_weight"]); | ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/freecontact.cpp:150:50: warning: '*((void*)& +12)' may be used uninitialized in this function [-Wmaybe-uninitialized] 150 | if(__kw.has_key("pseudocnt")) __ps.pseudocnt = bp::extract(__kw["pseudocnt"]); | ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/freecontact.cpp:147:42: warning: '*((void*)& +12)' may be used uninitialized in this function [-Wmaybe-uninitialized] 147 | if(__kw.has_key("gapth")) __ps.gapth = bp::extract(__kw["gapth"]); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/freecontact.cpp:146:46: warning: '*((void*)& +12)' may be used uninitialized in this function [-Wmaybe-uninitialized] 146 | if(__kw.has_key("density")) __ps.density = bp::extract(__kw["density"]); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/freecontact.cpp:144:46: warning: '*((void*)& +12)' may be used uninitialized in this function [-Wmaybe-uninitialized] 144 | if(__kw.has_key("clustpc")) __ps.clustpc = bp::extract(__kw["clustpc"]); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/freecontact.cpp: In function 'freq_vec_t input_freq_vec_t(const boost::python::list&)': src/freecontact.cpp:105:64: warning: '*((void*)& +12)' may be used uninitialized in this function [-Wmaybe-uninitialized] 105 | for(size_t i = 0, i_e = len(__aliw); i < i_e; ++i) aliw[i] = bp::extract(__aliw[i]); i686-linux-gnu-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-freecontact-1.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/src/freecontact.o -lfreecontact -lboost_python39 -o /build/python-freecontact-1.1/.pybuild/cpython3_3.9_freecontact/build/freecontact.cpython-39-i386-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/python-freecontact-1.1' PYBUILD_SYSTEM=custom \ PYBUILD_TEST_ARGS="{interpreter} /build/python-freecontact-1.1/test/test01.py" \ dh_auto_test dh_auto_test: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --test -i python{version} -p 3.9 I: pybuild base:232: python3.9 /build/python-freecontact-1.1/test/test01.py ..will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 seq weight loop for 1000 seqs took 0.044743 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.032225 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936355, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 3.38367 secs, inverted matrix (incl LUf) in 10.2312 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034737713 collected apc_mean[fro] = 3.35437752887409 all done in 10.446 secs . ---------------------------------------------------------------------- Ran 3 tests in 10.453s OK  !!!Skipping the rest of the tests for python3.9, need to be fixed! make[1]: Leaving directory '/build/python-freecontact-1.1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3 --buildsystem=pybuild --builddirectory=/build/python-freecontact-1.1/builddir dh_testroot -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_prep -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir rm -f -- debian/python3-freecontact.substvars rm -fr -- debian/.debhelper/generated/python3-freecontact/ debian/python3-freecontact/ debian/tmp/ dh_auto_install -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -d /build/python-freecontact-1.1/debian/python3-freecontact dh_auto_install: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --install -i python{version} -p 3.9 --dest-dir /build/python-freecontact-1.1/debian/python3-freecontact I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/python-freecontact-1.1/debian/python3-freecontact running install running build running build_ext running install_lib creating /build/python-freecontact-1.1/debian/python3-freecontact/usr creating /build/python-freecontact-1.1/debian/python3-freecontact/usr/lib creating /build/python-freecontact-1.1/debian/python3-freecontact/usr/lib/python3.9 creating /build/python-freecontact-1.1/debian/python3-freecontact/usr/lib/python3.9/dist-packages copying /build/python-freecontact-1.1/.pybuild/cpython3_3.9_freecontact/build/freecontact.cpython-39-i386-linux-gnu.so -> /build/python-freecontact-1.1/debian/python3-freecontact/usr/lib/python3.9/dist-packages running install_egg_info Writing /build/python-freecontact-1.1/debian/python3-freecontact/usr/lib/python3.9/dist-packages/python_freecontact-1.1.egg-info dh_installdocs -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -d debian/python3-freecontact/usr/share/doc/python3-freecontact install -d debian/.debhelper/generated/python3-freecontact install -p -m0644 debian/copyright debian/python3-freecontact/usr/share/doc/python3-freecontact/copyright dh_installchangelogs -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -p -m0644 debian/changelog debian/python3-freecontact/usr/share/doc/python3-freecontact/changelog.Debian install -p -m0644 ./Changes debian/python3-freecontact/usr/share/doc/python3-freecontact/changelog dh_installexamples -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -d debian/python3-freecontact/usr/share/doc/python3-freecontact/examples cp --reflink=auto -a ./examples/demo_1000.aln debian/python3-freecontact/usr/share/doc/python3-freecontact/examples dh_python3 -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir D: dh_python3 dh_python3:161: version: 4.20201102+nmu1 D: dh_python3 dh_python3:162: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild', '-O--builddirectory=/build/python-freecontact-1.1/builddir'] D: dh_python3 dh_python3:163: options: {'guess_deps': True, 'skip_private': False, 'verbose': False, 'arch': None, 'package': None, 'no_package': None, 'compile_all': False, 'vrange': None, 'regexpr': None, 'accept_upstream_versions': False, 'depends': None, 'depends_section': None, 'recommends': None, 'recommends_section': None, 'suggests': None, 'suggests_section': None, 'requires': None, 'shebang': None, 'ignore_shebangs': False, 'clean_dbg_pkg': True, 'no_ext_rename': False, 'no_shebang_rewrite': False, 'O': '--builddirectory=/build/python-freecontact-1.1/builddir'} D: dh_python3 dh_python3:164: args: [] D: dh_python3 dh_python3:165: supported Python versions: 3.9 (default=3.9) D: dh_python3 debhelper:152: source=python-freecontact, binary packages=['python3-freecontact'] D: dh_python3 dh_python3:183: processing package python3-freecontact... D: dh_python3 fs:49: moving files from debian/python3-freecontact/usr/lib/python3.9/dist-packages to debian/python3-freecontact/usr/lib/python3/dist-packages/ D: dh_python3 fs:260: package python3-freecontact details = {'requires.txt': set(), 'egg-info': {'debian/python3-freecontact/usr/lib/python3/dist-packages/python_freecontact-1.1.egg-info'}, 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': False, 'ext_vers': {Version('3.9')}, 'ext_no_version': set()} D: dh_python3 depends:117: generating dependencies for package python3-freecontact D: dh_python3 depends:275: D={'python3 (<< 3.10)', 'python3 (>= 3.9~)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installinit -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_installsystemduser -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_perl -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_link -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_strip_nondeterminism -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_compress -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir cd debian/python3-freecontact chmod a-x usr/share/doc/python3-freecontact/changelog usr/share/doc/python3-freecontact/changelog.Debian gzip -9nf usr/share/doc/python3-freecontact/changelog usr/share/doc/python3-freecontact/changelog.Debian cd '/build/python-freecontact-1.1' dh_fixperms -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir find debian/python3-freecontact -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/python3-freecontact ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-freecontact/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-freecontact/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-freecontact/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-freecontact -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-freecontact/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_dwz -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dwz -- debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-39-i386-linux-gnu.so dh_strip -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e5 objcopy --only-keep-debug --compress-debug-sections debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-39-i386-linux-gnu.so debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e5/54dc1ada682c0c8b0b8b69843dbd11ad437e07.debug chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e5/54dc1ada682c0c8b0b8b69843dbd11ad437e07.debug chown 0:0 -- debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e5/54dc1ada682c0c8b0b8b69843dbd11ad437e07.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-39-i386-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e5/54dc1ada682c0c8b0b8b69843dbd11ad437e07.debug debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-39-i386-linux-gnu.so install -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/share/doc ln -s python3-freecontact debian/.debhelper/python3-freecontact/dbgsym-root/usr/share/doc/python3-freecontact-dbgsym dh_makeshlibs -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir rm -f debian/python3-freecontact/DEBIAN/shlibs dh_shlibdeps -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir install -d debian/python3-freecontact/DEBIAN dpkg-shlibdeps -Tdebian/python3-freecontact.substvars debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-39-i386-linux-gnu.so dh_installdeb -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dh_gencontrol -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir echo misc:Depends= >> debian/python3-freecontact.substvars echo misc:Pre-Depends= >> debian/python3-freecontact.substvars install -d debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-freecontact -ldebian/changelog -Tdebian/python3-freecontact.substvars -Pdebian/.debhelper/python3-freecontact/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=python3-freecontact-dbgsym "-DDepends=python3-freecontact (= \${binary:Version})" "-DDescription=debug symbols for python3-freecontact" -DBuild-Ids=e554dc1ada682c0c8b0b8b69843dbd11ad437e07 -DSection=debug -UMulti-Arch -UReplaces -UBreaks dpkg-gencontrol: warning: package python3-freecontact: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-freecontact: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN/control chown 0:0 -- debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-freecontact -ldebian/changelog -Tdebian/python3-freecontact.substvars -Pdebian/python3-freecontact dpkg-gencontrol: warning: package python3-freecontact: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-freecontact: substitution variable ${python3:Versions} unused, but is defined chmod 0644 -- debian/python3-freecontact/DEBIAN/control chown 0:0 -- debian/python3-freecontact/DEBIAN/control dh_md5sums -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir cd debian/python3-freecontact >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-freecontact/DEBIAN/md5sums chown 0:0 -- debian/python3-freecontact/DEBIAN/md5sums cd debian/.debhelper/python3-freecontact/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN/md5sums chown 0:0 -- debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild -O--builddirectory=/build/python-freecontact-1.1/builddir dpkg-deb --build debian/python3-freecontact .. dpkg-deb --build debian/.debhelper/python3-freecontact/dbgsym-root .. dpkg-deb: building package 'python3-freecontact' in '../python3-freecontact_1.1-5_i386.deb'. dpkg-deb: building package 'python3-freecontact-dbgsym' in '../python3-freecontact-dbgsym_1.1-5_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-freecontact_1.1-5_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-freecontact-1.1/debian/source/options: --single-debian-patch dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/23905 and its subdirectories I: Current time: Thu Jul 14 06:06:41 -12 2022 I: pbuilder-time-stamp: 1657822001 Fri Jun 11 11:43:44 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos12-i386.debian.net. Fri Jun 11 11:43:44 UTC 2021 I: Preparing to do remote build '2' on ionos12-i386.debian.net. Fri Jun 11 11:49:30 UTC 2021 I: Deleting $TMPDIR on ionos12-i386.debian.net. Fri Jun 11 11:49:30 UTC 2021 I: python-freecontact_1.1-5_i386.changes: Format: 1.8 Date: Wed, 04 Sep 2019 10:13:14 +0200 Source: python-freecontact Binary: python3-freecontact python3-freecontact-dbgsym Architecture: i386 Version: 1.1-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: python3-freecontact - fast protein contact predictor - binding for Python3 Closes: 937765 Changes: python-freecontact (1.1-5) unstable; urgency=medium . * Drop Python2 support (normalise package description since only one binary package is remaining) Closes: #937765 * debhelper-compat 12 * Standards-Version: 4.4.0 * Respect DEB_BUILD_OPTIONS in override_dh_auto_test target * Remove obsolete fields Name, Contact from debian/upstream/metadata. Checksums-Sha1: 5976c921971e94aa908fafe789ce12d303b988d0 6139 python-freecontact_1.1-5_i386.buildinfo 1e0fbfa959e249bfa49f19ddda7b1a1edba6bdf0 436300 python3-freecontact-dbgsym_1.1-5_i386.deb 53f1ffd455e4fa5956c296fe79d7c67be147fdad 75032 python3-freecontact_1.1-5_i386.deb Checksums-Sha256: 3a83510e6e84218286e852c48d76d08950ba82731aa688ae963bb89c6dab6050 6139 python-freecontact_1.1-5_i386.buildinfo 41da61959ba57050bff0ceff0bc017f191384ccfe52e85088abfa4b33d14b91a 436300 python3-freecontact-dbgsym_1.1-5_i386.deb 90edd622a7b272d28db0aec6148aab72bc7e8ee469d3efa15bf8453b6b095cff 75032 python3-freecontact_1.1-5_i386.deb Files: dcbb2517fde0a3e2344699c7a30a98b5 6139 python optional python-freecontact_1.1-5_i386.buildinfo 974bcd4b25ac58326f712b9458005d96 436300 debug optional python3-freecontact-dbgsym_1.1-5_i386.deb a02625d07b916707171833f467e0dcd2 75032 python optional python3-freecontact_1.1-5_i386.deb Fri Jun 11 11:49:32 UTC 2021 I: diffoscope 172 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.altiO3nkMo/python-freecontact_1.1-5.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.altiO3nkMo/python-freecontact_1.1-5.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.altiO3nkMo/python-freecontact_1.1-5.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.altiO3nkMo/b1/python-freecontact_1.1-5_i386.changes /srv/reproducible-results/rbuild-debian/tmp.altiO3nkMo/b2/python-freecontact_1.1-5_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.265s) 0.265s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.023s) 0.023s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Fri Jun 11 11:49:33 UTC 2021 I: diffoscope 172 found no differences in the changes files, and a .buildinfo file also exists. Fri Jun 11 11:49:33 UTC 2021 I: python-freecontact from bullseye built successfully and reproducibly on i386. Fri Jun 11 11:49:34 UTC 2021 I: Submitting .buildinfo files to external archives: Fri Jun 11 11:49:34 UTC 2021 I: Submitting 8.0K b1/python-freecontact_1.1-5_i386.buildinfo.asc Fri Jun 11 11:49:35 UTC 2021 I: Submitting 8.0K b2/python-freecontact_1.1-5_i386.buildinfo.asc Fri Jun 11 11:49:36 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jun 11 11:49:36 UTC 2021 I: Done submitting .buildinfo files. Fri Jun 11 11:49:36 UTC 2021 I: Removing signed python-freecontact_1.1-5_i386.buildinfo.asc files: removed './b1/python-freecontact_1.1-5_i386.buildinfo.asc' removed './b2/python-freecontact_1.1-5_i386.buildinfo.asc'