Mon May 31 18:10:41 UTC 2021 I: starting to build python-bx/bullseye/i386 on jenkins on '2021-05-31 18:10' Mon May 31 18:10:41 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_10/10415/console.log Mon May 31 18:10:41 UTC 2021 I: Downloading source for bullseye/python-bx=0.8.9-1 --2021-05-31 18:10:42-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/python-bx/python-bx_0.8.9-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2182 (2.1K) Saving to: ‘python-bx_0.8.9-1.dsc’ 0K .. 100% 11.8M=0s 2021-05-31 18:10:42 (11.8 MB/s) - ‘python-bx_0.8.9-1.dsc’ saved [2182/2182] Mon May 31 18:10:42 UTC 2021 I: python-bx_0.8.9-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-bx Binary: python3-bx Architecture: any Version: 0.8.9-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Michael R. Crusoe Homepage: https://github.com/bxlab/bx-python Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/python-bx Vcs-Git: https://salsa.debian.org/med-team/python-bx.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-python, zlib1g-dev, python3-setuptools, python3-all-dev:any, python3-lzo, python3-nose , python3-numpy , python3-six, cython3 Package-List: python3-bx deb python optional arch=any Checksums-Sha1: 47293bf5db24d66d5d96070ac1cd329227da9a0c 1651514 python-bx_0.8.9.orig.tar.gz 34a9e80bb5df1f23552b98c71fcb486a7dfb692d 9332 python-bx_0.8.9-1.debian.tar.xz Checksums-Sha256: b7794220170af14bd4062cebd77ce56cb4c3ac6412fe197c2155aa5dc47ef6c9 1651514 python-bx_0.8.9.orig.tar.gz c79f40427d6cb9673b6a48651cfb641937cd5bbae716c09f07f99d54fe51f4e7 9332 python-bx_0.8.9-1.debian.tar.xz Files: a18f0bc03a6a9f39b365b3634633ee2c 1651514 python-bx_0.8.9.orig.tar.gz c8829fc1db21e236cf399c798886935b 9332 python-bx_0.8.9-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJHBAEBCAAxFiEEhMGXeonn7+0+XKYuL9i+2sAg7tEFAmA2vPgTHG1vZWxsZXJA ZGViaWFuLm9yZwAKCRAv2L7awCDu0TC+D/9QA84D3xv1uymRi2LkX2Qh05asXjTX /4wy4HMMuaaTtzpaFal39VyYTh5AIakiqrI9Hvy7mvcU+luytzr5N0ARwh9XKvcy 6r215PxvnzBQiPXLZOW5CagqkOpmjA0Dgrua70XZYBSEGKI54RNeI07CppauKTw6 9mwJeZS3sH1AvSLfAOnizbl4ClDHWhlI0JYWTEBqQE5v4eWNEoR6SzNASW8P+zke avW7ass8iTWB2cwbtKT20SAHHgllevQi60kvScMV8EMyqZtmWpuS43zhlmbd4bki iPc6h3c5ZQOuYS6xligBugPJQyYoQQYsciXjQOloXQ19EEJrhh41+ew6BhkfgL5i O71TC3HyuX8s3O95r8FxS2k66IwJd9zCayZqWigD7kW3+3Hvxh2Q9kDWM9/7tjFo /Mr1xKL0r+TUpgiBcJazQHgKl/l5W2T4qKbBRa510wR+TsxzR9TP3JCu9UUHtQCW gYEkUEZr4qF8ll15tvTLn6kr4DBjuIMFvxPnmnsTZZ3XvyDmTWrCHUHp3JWA/VIa 91ub3nNDJquR3vdDF8ImMiuW/Yq358UZdwLLA/+QVT1YtFN/gzIiGyuFpcB7G984 sczWh/u8UccNjL4iEw4M6Vx/XVzP3LiXcm0BVdC5psbb635Bi+RqQo1CFOl/uEIn frpDSGnFXztewg== =fgdA -----END PGP SIGNATURE----- Mon May 31 18:10:42 UTC 2021 I: Checking whether the package is not for us Mon May 31 18:10:42 UTC 2021 I: Starting 1st build on remote node ionos6-i386.debian.net. Mon May 31 18:10:42 UTC 2021 I: Preparing to do remote build '1' on ionos6-i386.debian.net. Mon May 31 18:12:20 UTC 2021 I: Deleting $TMPDIR on ionos6-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jul 3 12:33:43 -12 2022 I: pbuilder-time-stamp: 1656894823 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [python-bx_0.8.9-1.dsc] I: copying [./python-bx_0.8.9.orig.tar.gz] I: copying [./python-bx_0.8.9-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.rZWO9FpM/trustedkeys.kbx': General error gpgv: Signature made Wed Feb 24 08:54:16 2021 -12 gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./python-bx_0.8.9-1.dsc dpkg-source: info: extracting python-bx in python-bx-0.8.9 dpkg-source: info: unpacking python-bx_0.8.9.orig.tar.gz dpkg-source: info: unpacking python-bx_0.8.9-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying shebang.patch dpkg-source: info: applying no-download.patch dpkg-source: info: applying fix_BIN_OFFSETS_MAX I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/34213/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=18' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='fa6bb3414bd6408b8ac38effe016270c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='34213' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.afHx06P971/pbuilderrc_NcOR --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.afHx06P971/b1 --logfile b1/build.log python-bx_0.8.9-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://85.184.249.68:3128' I: uname -a Linux ionos6-i386 4.19.0-16-amd64 #1 SMP Debian 4.19.181-1 (2021-03-19) x86_64 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Feb 24 2021 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Feb 7 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 7 2021 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 2021 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Feb 7 2021 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 7 2021 more -rwsr-xr-x 1 root root 50720 Feb 7 2021 mount -rwxr-xr-x 1 root root 13856 Feb 7 2021 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Feb 24 2021 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jun 28 02:13 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Feb 7 2021 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 2021 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 7 2021 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 7 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/34213/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, zlib1g-dev, python3-setuptools, python3-all-dev:any, python3-lzo, python3-nose, python3-numpy, python3-six, cython3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19674 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev:any. pbuilder-satisfydepends-dummy depends on python3-lzo; however: Package python3-lzo is not installed. pbuilder-satisfydepends-dummy depends on python3-nose; however: Package python3-nose is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-six; however: Package python3-six is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu67{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblzo2-2{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-lzo{a} python3-minimal{a} python3-nose{a} python3-numpy{a} python3-pkg-resources{a} python3-setuptools{a} python3-six{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 70 newly installed, 0 to remove and 0 not upgraded. Need to get 39.9 MB of archives. After unpacking 158 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 libpython3.9-minimal i386 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2 [98.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 python3.9-minimal i386 3.9.2-1 [1956 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 python3-minimal i386 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libmpdec3 i386 2.5.1-1 [91.9 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 libreadline8 i386 8.1-1 [173 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 libpython3.9-stdlib i386 3.9.2-1 [1703 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 python3.9 i386 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 libpython3-stdlib i386 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 python3 i386 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 cython3 i386 0.29.21-3+b1 [1303 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-6 [8776 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 python3-distutils all 3.9.2-1 [143 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 libblas3 i386 3.9.0-3 [147 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 libexpat1-dev i386 2.2.10-2 [147 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 libgfortran5 i386 10.2.1-6 [643 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 52 http://deb.debian.org/debian bullseye/main i386 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 53 http://deb.debian.org/debian bullseye/main i386 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 54 http://deb.debian.org/debian bullseye/main i386 liblapack3 i386 3.9.0-3 [1960 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 liblzo2-2 i386 2.10-2 [59.7 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 libpython3.9 i386 3.9.2-1 [1715 kB] Get: 57 http://deb.debian.org/debian bullseye/main i386 libpython3.9-dev i386 3.9.2-1 [3822 kB] Get: 58 http://deb.debian.org/debian bullseye/main i386 libpython3-dev i386 3.9.2-3 [21.7 kB] Get: 59 http://deb.debian.org/debian bullseye/main i386 libpython3-all-dev i386 3.9.2-3 [1068 B] Get: 60 http://deb.debian.org/debian bullseye/main i386 python3-all i386 3.9.2-3 [1060 B] Get: 61 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] Get: 62 http://deb.debian.org/debian bullseye/main i386 python3.9-dev i386 3.9.2-1 [515 kB] Get: 63 http://deb.debian.org/debian bullseye/main i386 python3-dev i386 3.9.2-3 [24.8 kB] Get: 64 http://deb.debian.org/debian bullseye/main i386 python3-all-dev i386 3.9.2-3 [1068 B] Get: 65 http://deb.debian.org/debian bullseye/main i386 python3-lzo i386 1.12-3+b4 [7632 B] Get: 66 http://deb.debian.org/debian bullseye/main i386 python3-pkg-resources all 52.0.0-3 [189 kB] Get: 67 http://deb.debian.org/debian bullseye/main i386 python3-nose all 1.3.7-7 [133 kB] Get: 68 http://deb.debian.org/debian bullseye/main i386 python3-numpy i386 1:1.19.5-1 [3600 kB] Get: 69 http://deb.debian.org/debian bullseye/main i386 python3-setuptools all 52.0.0-3 [441 kB] Get: 70 http://deb.debian.org/debian bullseye/main i386 python3-six all 1.16.0-1 [17.1 kB] Fetched 39.9 MB in 0s (90.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19674 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-7_i386.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../1-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../3-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:i386. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_i386.deb ... Unpacking libpython3.9-minimal:i386 (3.9.2-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../6-libexpat1_2.2.10-2_i386.deb ... Unpacking libexpat1:i386 (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_i386.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:i386 (3.9.2-1) ... Setting up libexpat1:i386 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20541 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_i386.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:i386. Preparing to unpack .../2-libmpdec3_2.5.1-1_i386.deb ... Unpacking libmpdec3:i386 (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../3-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:i386. Preparing to unpack .../4-libreadline8_8.1-1_i386.deb ... Unpacking libreadline8:i386 (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:i386. Preparing to unpack .../5-libpython3.9-stdlib_3.9.2-1_i386.deb ... Unpacking libpython3.9-stdlib:i386 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../6-python3.9_3.9.2-1_i386.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../7-libpython3-stdlib_3.9.2-3_i386.deb ... Unpacking libpython3-stdlib:i386 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20962 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_i386.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.39-3_i386.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../03-libmagic1_1%3a5.39-3_i386.deb ... Unpacking libmagic1:i386 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.39-3_i386.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-4_i386.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../06-libsigsegv2_2.13-1_i386.deb ... Unpacking libsigsegv2:i386 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../07-m4_1.4.18-5_i386.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../08-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../09-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../10-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../11-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package cython3. Preparing to unpack .../12-cython3_0.29.21-3+b1_i386.deb ... Unpacking cython3 (0.29.21-3+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../13-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../14-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../15-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../16-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../17-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../18-libfile-stripnondeterminism-perl_1.11.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.11.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../19-dh-strip-nondeterminism_1.11.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.11.0-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../20-libelf1_0.183-1_i386.deb ... Unpacking libelf1:i386 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../21-dwz_0.13+20210201-1_i386.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:i386. Preparing to unpack .../22-libicu67_67.1-6_i386.deb ... Unpacking libicu67:i386 (67.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../23-libxml2_2.9.10+dfsg-6.7_i386.deb ... Unpacking libxml2:i386 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../24-gettext_0.21-4_i386.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../25-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../26-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../27-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../28-python3-lib2to3_3.9.2-1_all.deb ... Unpacking python3-lib2to3 (3.9.2-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../29-python3-distutils_3.9.2-1_all.deb ... Unpacking python3-distutils (3.9.2-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../30-dh-python_4.20201102+nmu1_all.deb ... Unpacking dh-python (4.20201102+nmu1) ... Selecting previously unselected package libblas3:i386. Preparing to unpack .../31-libblas3_3.9.0-3_i386.deb ... Unpacking libblas3:i386 (3.9.0-3) ... Selecting previously unselected package libexpat1-dev:i386. Preparing to unpack .../32-libexpat1-dev_2.2.10-2_i386.deb ... Unpacking libexpat1-dev:i386 (2.2.10-2) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../33-libgfortran5_10.2.1-6_i386.deb ... Unpacking libgfortran5:i386 (10.2.1-6) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../34-libjs-jquery_3.5.1+dfsg+~3.5.5-7_all.deb ... Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../35-libjs-underscore_1.9.1~dfsg-3_all.deb ... Unpacking libjs-underscore (1.9.1~dfsg-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../36-libjs-sphinxdoc_3.4.3-2_all.deb ... Unpacking libjs-sphinxdoc (3.4.3-2) ... Selecting previously unselected package liblapack3:i386. Preparing to unpack .../37-liblapack3_3.9.0-3_i386.deb ... Unpacking liblapack3:i386 (3.9.0-3) ... Selecting previously unselected package liblzo2-2:i386. Preparing to unpack .../38-liblzo2-2_2.10-2_i386.deb ... Unpacking liblzo2-2:i386 (2.10-2) ... Selecting previously unselected package libpython3.9:i386. Preparing to unpack .../39-libpython3.9_3.9.2-1_i386.deb ... Unpacking libpython3.9:i386 (3.9.2-1) ... Selecting previously unselected package libpython3.9-dev:i386. Preparing to unpack .../40-libpython3.9-dev_3.9.2-1_i386.deb ... Unpacking libpython3.9-dev:i386 (3.9.2-1) ... Selecting previously unselected package libpython3-dev:i386. Preparing to unpack .../41-libpython3-dev_3.9.2-3_i386.deb ... Unpacking libpython3-dev:i386 (3.9.2-3) ... Selecting previously unselected package libpython3-all-dev:i386. Preparing to unpack .../42-libpython3-all-dev_3.9.2-3_i386.deb ... Unpacking libpython3-all-dev:i386 (3.9.2-3) ... Selecting previously unselected package python3-all. Preparing to unpack .../43-python3-all_3.9.2-3_i386.deb ... Unpacking python3-all (3.9.2-3) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../44-zlib1g-dev_1%3a1.2.11.dfsg-2_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.11.dfsg-2) ... Selecting previously unselected package python3.9-dev. Preparing to unpack .../45-python3.9-dev_3.9.2-1_i386.deb ... Unpacking python3.9-dev (3.9.2-1) ... Selecting previously unselected package python3-dev. Preparing to unpack .../46-python3-dev_3.9.2-3_i386.deb ... Unpacking python3-dev (3.9.2-3) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../47-python3-all-dev_3.9.2-3_i386.deb ... Unpacking python3-all-dev (3.9.2-3) ... Selecting previously unselected package python3-lzo. Preparing to unpack .../48-python3-lzo_1.12-3+b4_i386.deb ... Unpacking python3-lzo (1.12-3+b4) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../49-python3-pkg-resources_52.0.0-3_all.deb ... Unpacking python3-pkg-resources (52.0.0-3) ... Selecting previously unselected package python3-nose. Preparing to unpack .../50-python3-nose_1.3.7-7_all.deb ... Unpacking python3-nose (1.3.7-7) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../51-python3-numpy_1%3a1.19.5-1_i386.deb ... Unpacking python3-numpy (1:1.19.5-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../52-python3-setuptools_52.0.0-3_all.deb ... Unpacking python3-setuptools (52.0.0-3) ... Selecting previously unselected package python3-six. Preparing to unpack .../53-python3-six_1.16.0-1_all.deb ... Unpacking python3-six (1.16.0-1) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:i386 (1.5.3-1) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:i386 (67.1-6) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:i386 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up liblzo2-2:i386 (2.10-2) ... Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:i386 (3.9.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libexpat1-dev:i386 (2.2.10-2) ... Setting up libsigsegv2:i386 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libgfortran5:i386 (10.2.1-6) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libmpdec3:i386 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libelf1:i386 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:i386 (2.9.10+dfsg-6.7) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up liblapack3:i386 (3.9.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libreadline8:i386 (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libpython3.9-stdlib:i386 (3.9.2-1) ... Setting up libpython3-stdlib:i386 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libpython3.9:i386 (3.9.2-1) ... Setting up python3.9 (3.9.2-1) ... Setting up libpython3.9-dev:i386 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-six (1.16.0-1) ... Setting up cython3 (0.29.21-3+b1) ... Setting up python3.9-dev (3.9.2-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-lzo (1.12-3+b4) ... Setting up python3-pkg-resources (52.0.0-3) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up libpython3-dev:i386 (3.9.2-3) ... Setting up python3-setuptools (52.0.0-3) ... Setting up python3-all (3.9.2-3) ... Setting up python3-nose (1.3.7-7) ... Setting up libpython3-all-dev:i386 (3.9.2-3) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-all-dev (3.9.2-3) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/python-bx-0.8.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package python-bx dpkg-buildpackage: info: source version 0.8.9-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steffen Moeller dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/python-bx-0.8.9' dh_auto_clean I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build' (and everything under it) 'build/bdist.linux-i386' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it find -name "*.pyx" | sed 's/pyx$/c/' | xargs rm -f grep -rli "Generated by Cython" lib/ | xargs -r rm rm -rf lib/bx_python.egg-info make[1]: Leaving directory '/build/python-bx-0.8.9' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py copying lib/psyco_full.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build creating /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras copying lib/bx_extras/pyparsing.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras copying lib/bx_extras/stats.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras copying lib/bx_extras/fpconst_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras copying lib/bx_extras/__init__.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras copying lib/bx_extras/pstat.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras copying lib/bx_extras/fpconst.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras copying lib/bx_extras/lrucache.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras creating /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/seqmapping_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/wiggle_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/interval_index_file_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/gene_reader.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/bitset_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/binned_array_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/seqmapping.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/interval_index_file.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/binned_array.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/__init__.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/wiggle.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/bitset_builders.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/bitset_utils.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx copying lib/bx/filter.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx creating /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq copying lib/bx/seq/twobit.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq copying lib/bx/seq/core.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq copying lib/bx/seq/fasta.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq copying lib/bx/seq/qdna_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq copying lib/bx/seq/nib.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq copying lib/bx/seq/twobit_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq copying lib/bx/seq/seq_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq copying lib/bx/seq/fasta_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq copying lib/bx/seq/qdna.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq copying lib/bx/seq/__init__.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq copying lib/bx/seq/nib_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq copying lib/bx/seq/seq.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq creating /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays copying lib/bx/arrays/array_tree_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays copying lib/bx/arrays/__init__.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays creating /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo copying lib/bx/phylo/phast_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo copying lib/bx/phylo/newick.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo copying lib/bx/phylo/__init__.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo copying lib/bx/phylo/newick_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo copying lib/bx/phylo/phast.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo creating /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi copying lib/bx/bbi/bigwig_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi copying lib/bx/bbi/__init__.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi creating /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc copying lib/bx/misc/seeklzop.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc copying lib/bx/misc/binary_file.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc copying lib/bx/misc/readlengths.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc copying lib/bx/misc/filecache.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc copying lib/bx/misc/cdb.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc copying lib/bx/misc/seeklzop_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc copying lib/bx/misc/seekbzip2_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc copying lib/bx/misc/cdb_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc copying lib/bx/misc/filecache_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc copying lib/bx/misc/__init__.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc copying lib/bx/misc/seekbzip2.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc copying lib/bx/misc/bgzf_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc creating /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align copying lib/bx/align/axt.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align copying lib/bx/align/core.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align copying lib/bx/align/score_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align copying lib/bx/align/lav_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align copying lib/bx/align/maf_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align copying lib/bx/align/maf.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align copying lib/bx/align/lav.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align copying lib/bx/align/epo.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align copying lib/bx/align/score.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align copying lib/bx/align/__init__.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align copying lib/bx/align/epo_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align creating /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intseq copying lib/bx/intseq/__init__.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intseq creating /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/tabular copying lib/bx/tabular/__init__.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/tabular copying lib/bx/tabular/io.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/tabular creating /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif copying lib/bx/motif/pwm.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif copying lib/bx/motif/__init__.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif copying lib/bx/motif/pwm_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif creating /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals copying lib/bx/intervals/cluster_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals copying lib/bx/intervals/intersection_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals copying lib/bx/intervals/__init__.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals copying lib/bx/intervals/random_intervals.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals copying lib/bx/intervals/io.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals creating /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm copying lib/bx/pwm/pwm_score_positions.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm copying lib/bx/pwm/pwm_score_maf.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm copying lib/bx/pwm/bed_score_aligned_string.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm copying lib/bx/pwm/position_weight_matrix.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm copying lib/bx/pwm/maf_select_motifs.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm copying lib/bx/pwm/pwm_score_motifs.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm copying lib/bx/pwm/bed_score_aligned_pwm.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm copying lib/bx/pwm/__init__.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm copying lib/bx/pwm/pwm_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm creating /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/cookbook copying lib/bx/cookbook/progress_bar.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/cookbook copying lib/bx/cookbook/argparse.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/cookbook copying lib/bx/cookbook/__init__.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/cookbook copying lib/bx/cookbook/attribute.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/cookbook copying lib/bx/cookbook/doc_optparse.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/cookbook creating /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools copying lib/bx/align/tools/tile.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools copying lib/bx/align/tools/chop.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools copying lib/bx/align/tools/thread.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools copying lib/bx/align/tools/__init__.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools copying lib/bx/align/tools/fuse.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools creating /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask copying lib/bx/align/sitemask/core.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask copying lib/bx/align/sitemask/sitemask_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask copying lib/bx/align/sitemask/quality.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask copying lib/bx/align/sitemask/__init__.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask copying lib/bx/align/sitemask/cpg.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask creating /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/logo copying lib/bx/motif/logo/__init__.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/logo creating /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/io copying lib/bx/motif/io/transfac_tests.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/io copying lib/bx/motif/io/transfac.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/io copying lib/bx/motif/io/__init__.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/io creating /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/coverage.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/quicksect.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/merge.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/complement.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/base_coverage.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/join.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/find_clusters.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/concat.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/__init__.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/intersect.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations copying lib/bx/intervals/operations/subtract.py -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations copying lib/bx/motif/logo/template.ps -> /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/logo Skipping optional fixer: buffer Skipping optional fixer: idioms Skipping optional fixer: set_literal Skipping optional fixer: ws_comma running build_ext cythoning lib/bx/bitset.pyx to lib/bx/bitset.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.9/lib/bx/bitset.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/intervals/intersection.pyx to lib/bx/intervals/intersection.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.9/lib/bx/intervals/intersection.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/align/_core.pyx to lib/bx/align/_core.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.9/lib/bx/align/_core.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/seq/_nib.pyx to lib/bx/seq/_nib.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.9/lib/bx/seq/_nib.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/seq/_twobit.pyx to lib/bx/seq/_twobit.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.9/lib/bx/seq/_twobit.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/_seqmapping.pyx to lib/bx/_seqmapping.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.9/lib/bx/_seqmapping.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/misc/bgzf.pyx to lib/bx/misc/bgzf.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.9/lib/bx/misc/bgzf.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/intervals/cluster.pyx to lib/bx/intervals/cluster.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.9/lib/bx/intervals/cluster.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/pwm/_position_weight_matrix.pyx to lib/bx/pwm/_position_weight_matrix.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.9/lib/bx/pwm/_position_weight_matrix.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/motif/_pwm.pyx to lib/bx/motif/_pwm.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.9/lib/bx/motif/_pwm.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/arrays/array_tree.pyx to lib/bx/arrays/array_tree.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.9/lib/bx/arrays/array_tree.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/bbi/bpt_file.pyx to lib/bx/bbi/bpt_file.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.9/lib/bx/bbi/bpt_file.pxd tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/bbi/cirtree_file.pyx to lib/bx/bbi/cirtree_file.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.9/lib/bx/bbi/cirtree_file.pxd tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/bbi/bbi_file.pyx to lib/bx/bbi/bbi_file.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.9/lib/bx/bbi/bbi_file.pxd tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/bbi/bigwig_file.pyx to lib/bx/bbi/bigwig_file.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.9/lib/bx/bbi/bigwig_file.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/bbi/bigbed_file.pyx to lib/bx/bbi/bigbed_file.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.9/lib/bx/bbi/bigbed_file.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/align/_epo.pyx to lib/bx/align/_epo.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.9/lib/bx/align/_epo.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/arrays/bed.pyx to lib/bx/arrays/bed.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.9/lib/bx/arrays/bed.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/arrays/wiggle.pyx to lib/bx/arrays/wiggle.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.9/lib/bx/arrays/wiggle.pxd tree = Parsing.p_module(s, pxd, full_module_name) warning: lib/bx/arrays/wiggle.pyx:94:20: Unreachable code cythoning lib/bx/align/sitemask/_cpg.pyx to lib/bx/align/sitemask/_cpg.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.9/lib/bx/align/sitemask/_cpg.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/intseq/ngramcount.pyx to lib/bx/intseq/ngramcount.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.9/lib/bx/intseq/ngramcount.pyx tree = Parsing.p_module(s, pxd, full_module_name) cythoning lib/bx/misc/_seekbzip2.pyx to lib/bx/misc/_seekbzip2.c /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:369: FutureWarning: Cython directive 'language_level' not set, using 2 for now (Py2). This will change in a later release! File: /build/python-bx-0.8.9/lib/bx/misc/_seekbzip2.pyx tree = Parsing.p_module(s, pxd, full_module_name) building 'bx.bitset' extension creating build creating build/temp.linux-i386-3.9 creating build/temp.linux-i386-3.9/lib creating build/temp.linux-i386-3.9/lib/bx creating build/temp.linux-i386-3.9/src creating build/temp.linux-i386-3.9/src/kent i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.9 -c lib/bx/bitset.c -o build/temp.linux-i386-3.9/lib/bx/bitset.o i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.9 -c src/binBits.c -o build/temp.linux-i386-3.9/src/binBits.o i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.9 -c src/kent/bits.c -o build/temp.linux-i386-3.9/src/kent/bits.o src/kent/bits.c:9:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=] 9 | static char const rcsid[] = "$Id: bits.c,v 1.20 2008/03/25 16:32:31 angie Exp $"; | ^~~~~ i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/kent -Isrc -I/usr/include/python3.9 -c src/kent/common.c -o build/temp.linux-i386-3.9/src/kent/common.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/lib/bx/bitset.o build/temp.linux-i386-3.9/src/binBits.o build/temp.linux-i386-3.9/src/kent/bits.o build/temp.linux-i386-3.9/src/kent/common.o -o /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bitset.cpython-39-i386-linux-gnu.so building 'bx.intervals.intersection' extension creating build/temp.linux-i386-3.9/lib/bx/intervals i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/intervals/intersection.c -o build/temp.linux-i386-3.9/lib/bx/intervals/intersection.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/lib/bx/intervals/intersection.o -o /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/intersection.cpython-39-i386-linux-gnu.so building 'bx.align._core' extension creating build/temp.linux-i386-3.9/lib/bx/align i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/align/_core.c -o build/temp.linux-i386-3.9/lib/bx/align/_core.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/lib/bx/align/_core.o -o /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/_core.cpython-39-i386-linux-gnu.so building 'bx.seq._nib' extension creating build/temp.linux-i386-3.9/lib/bx/seq i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/seq/_nib.c -o build/temp.linux-i386-3.9/lib/bx/seq/_nib.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/lib/bx/seq/_nib.o -o /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/_nib.cpython-39-i386-linux-gnu.so building 'bx.seq._twobit' extension i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/seq/_twobit.c -o build/temp.linux-i386-3.9/lib/bx/seq/_twobit.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/lib/bx/seq/_twobit.o -o /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/_twobit.cpython-39-i386-linux-gnu.so building 'bx._seqmapping' extension i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/_seqmapping.c -o build/temp.linux-i386-3.9/lib/bx/_seqmapping.o lib/bx/_seqmapping.c: In function ‘__pyx_pf_2bx_11_seqmapping_21CharToIntArrayMapping_6translate’: lib/bx/_seqmapping.c:1797:3: warning: ‘PyObject_AsWriteBuffer’ is deprecated [-Wdeprecated-declarations] 1797 | __pyx_t_1 = PyObject_AsWriteBuffer(__pyx_v_rval, ((void **)(&__pyx_v_t_buf)), (&__pyx_v_t_len)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 52, __pyx_L1_error) | ^~~~~~~~~ In file included from /usr/include/python3.9/Python.h:151, from lib/bx/_seqmapping.c:4: /usr/include/python3.9/abstract.h:354:17: note: declared here 354 | PyAPI_FUNC(int) PyObject_AsWriteBuffer(PyObject *obj, | ^~~~~~~~~~~~~~~~~~~~~~ lib/bx/_seqmapping.c: In function ‘__pyx_pf_2bx_11_seqmapping_21CharToIntArrayMapping_8translate_list’: lib/bx/_seqmapping.c:2000:3: warning: ‘PyObject_AsWriteBuffer’ is deprecated [-Wdeprecated-declarations] 2000 | __pyx_t_7 = PyObject_AsWriteBuffer(__pyx_v_rval, ((void **)(&__pyx_v_t_buf)), (&__pyx_v_t_len)); if (unlikely(__pyx_t_7 == ((int)-1))) __PYX_ERR(0, 75, __pyx_L1_error) | ^~~~~~~~~ In file included from /usr/include/python3.9/Python.h:151, from lib/bx/_seqmapping.c:4: /usr/include/python3.9/abstract.h:354:17: note: declared here 354 | PyAPI_FUNC(int) PyObject_AsWriteBuffer(PyObject *obj, | ^~~~~~~~~~~~~~~~~~~~~~ lib/bx/_seqmapping.c: In function ‘__pyx_pf_2bx_11_seqmapping_15IntToIntMapping_6translate’: lib/bx/_seqmapping.c:3075:3: warning: ‘PyObject_AsReadBuffer’ is deprecated [-Wdeprecated-declarations] 3075 | __pyx_t_1 = PyObject_AsReadBuffer(__pyx_v_src, ((void const **)(&__pyx_v_s_buf)), (&__pyx_v_s_len)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 132, __pyx_L1_error) | ^~~~~~~~~ In file included from /usr/include/python3.9/Python.h:151, from lib/bx/_seqmapping.c:4: /usr/include/python3.9/abstract.h:343:17: note: declared here 343 | PyAPI_FUNC(int) PyObject_AsReadBuffer(PyObject *obj, | ^~~~~~~~~~~~~~~~~~~~~ lib/bx/_seqmapping.c:3176:3: warning: ‘PyObject_AsWriteBuffer’ is deprecated [-Wdeprecated-declarations] 3176 | __pyx_t_1 = PyObject_AsWriteBuffer(__pyx_v_rval, ((void **)(&__pyx_v_t_buf)), (&__pyx_v_t_len)); if (unlikely(__pyx_t_1 == ((int)-1))) __PYX_ERR(0, 137, __pyx_L1_error) | ^~~~~~~~~ In file included from /usr/include/python3.9/Python.h:151, from lib/bx/_seqmapping.c:4: /usr/include/python3.9/abstract.h:354:17: note: declared here 354 | PyAPI_FUNC(int) PyObject_AsWriteBuffer(PyObject *obj, | ^~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/lib/bx/_seqmapping.o -o /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/_seqmapping.cpython-39-i386-linux-gnu.so building 'bx.misc.bgzf' extension creating build/temp.linux-i386-3.9/lib/bx/misc creating build/temp.linux-i386-3.9/src/samtools i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/samtools -I/usr/include/python3.9 -c lib/bx/misc/bgzf.c -o build/temp.linux-i386-3.9/lib/bx/misc/bgzf.o i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/samtools -I/usr/include/python3.9 -c src/samtools/bgzf.c -o build/temp.linux-i386-3.9/src/samtools/bgzf.o src/samtools/bgzf.c: In function ‘cache_block’: src/samtools/bgzf.c:422:40: warning: comparison of integer expressions of different signedness: ‘khint_t’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 422 | if ((kh_size(h) + 1) * MAX_BLOCK_SIZE > fp->cache_size) { | ^ src/samtools/bgzf.c: In function ‘read_block’: src/samtools/bgzf.c:462:15: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 462 | if (count != sizeof(header)) { | ^~ src/samtools/bgzf.c: In function ‘bgzf_close’: src/samtools/bgzf.c:603:8: warning: variable ‘count’ set but not used [-Wunused-but-set-variable] 603 | int count, block_length = deflate_block(fp, 0); | ^~~~~ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/lib/bx/misc/bgzf.o build/temp.linux-i386-3.9/src/samtools/bgzf.o -lz -o /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/bgzf.cpython-39-i386-linux-gnu.so building 'bx.intervals.cluster' extension i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.9 -c lib/bx/intervals/cluster.c -o build/temp.linux-i386-3.9/lib/bx/intervals/cluster.o i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.9 -c src/cluster.c -o build/temp.linux-i386-3.9/src/cluster.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/lib/bx/intervals/cluster.o build/temp.linux-i386-3.9/src/cluster.o -o /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/cluster.cpython-39-i386-linux-gnu.so building 'bx.pwm._position_weight_matrix' extension creating build/temp.linux-i386-3.9/lib/bx/pwm i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.9 -c lib/bx/pwm/_position_weight_matrix.c -o build/temp.linux-i386-3.9/lib/bx/pwm/_position_weight_matrix.o i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.9 -c src/pwm_utils.c -o build/temp.linux-i386-3.9/src/pwm_utils.o src/pwm_utils.c: In function ‘main’: src/pwm_utils.c:11:27: warning: implicit declaration of function ‘strlen’ [-Wimplicit-function-declaration] 11 | int string_size = strlen(argv[1]); | ^~~~~~ src/pwm_utils.c:11:27: warning: incompatible implicit declaration of built-in function ‘strlen’ src/pwm_utils.c:5:1: note: include ‘’ or provide a declaration of ‘strlen’ 4 | #include +++ |+#include 5 | src/pwm_utils.c:12:29: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 12 | if (strlen(argv[2]) != string_size) { | ^~ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/lib/bx/pwm/_position_weight_matrix.o build/temp.linux-i386-3.9/src/pwm_utils.o -o /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/_position_weight_matrix.cpython-39-i386-linux-gnu.so building 'bx.motif._pwm' extension creating build/temp.linux-i386-3.9/lib/bx/motif i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c lib/bx/motif/_pwm.c -o build/temp.linux-i386-3.9/lib/bx/motif/_pwm.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/motif/_pwm.c:608: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:21, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/motif/_pwm.c:608: /usr/lib/python3/dist-packages/numpy/core/include/numpy/__multiarray_api.h:1463:1: warning: ‘_import_array’ defined but not used [-Wunused-function] 1463 | _import_array(void) | ^~~~~~~~~~~~~ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/lib/bx/motif/_pwm.o -o /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/_pwm.cpython-39-i386-linux-gnu.so building 'bx.arrays.array_tree' extension creating build/temp.linux-i386-3.9/lib/bx/arrays i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c lib/bx/arrays/array_tree.c -o build/temp.linux-i386-3.9/lib/bx/arrays/array_tree.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/arrays/array_tree.c:610: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/lib/bx/arrays/array_tree.o -o /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/array_tree.cpython-39-i386-linux-gnu.so building 'bx.bbi.bpt_file' extension creating build/temp.linux-i386-3.9/lib/bx/bbi i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/bbi/bpt_file.c -o build/temp.linux-i386-3.9/lib/bx/bbi/bpt_file.o lib/bx/bbi/bpt_file.c: In function ‘__pyx_pf_2bx_3bbi_8bpt_file_7BPTFile_6find’: lib/bx/bbi/bpt_file.c:2509:27: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare] 2509 | __pyx_t_2 = ((__pyx_t_1 > __pyx_v_self->key_size) != 0); | ^ lib/bx/bbi/bpt_file.c:2540:27: warning: comparison of integer expressions of different signedness: ‘Py_ssize_t’ {aka ‘int’} and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare] 2540 | __pyx_t_2 = ((__pyx_t_1 < __pyx_v_self->key_size) != 0); | ^ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/lib/bx/bbi/bpt_file.o -o /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bpt_file.cpython-39-i386-linux-gnu.so building 'bx.bbi.cirtree_file' extension i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/bbi/cirtree_file.c -o build/temp.linux-i386-3.9/lib/bx/bbi/cirtree_file.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/lib/bx/bbi/cirtree_file.o -o /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/cirtree_file.cpython-39-i386-linux-gnu.so building 'bx.bbi.bbi_file' extension i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c lib/bx/bbi/bbi_file.c -o build/temp.linux-i386-3.9/lib/bx/bbi/bbi_file.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/bbi/bbi_file.c:610: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/lib/bx/bbi/bbi_file.o -o /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bbi_file.cpython-39-i386-linux-gnu.so building 'bx.bbi.bigwig_file' extension i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c lib/bx/bbi/bigwig_file.c -o build/temp.linux-i386-3.9/lib/bx/bbi/bigwig_file.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/bbi/bigwig_file.c:610: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_18BigWigBlockHandler_handle_block’: lib/bx/bbi/bigwig_file.c:3299:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare] 3299 | __pyx_t_11 = ((__pyx_v_s < __pyx_v_self->start) != 0); | ^ lib/bx/bbi/bigwig_file.c:3328:30: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare] 3328 | __pyx_t_11 = ((__pyx_v_e > __pyx_v_self->end) != 0); | ^ lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_29ArrayAccumulatingBlockHandler_handle_interval_value’: lib/bx/bbi/bigwig_file.c:5252:76: warning: comparison of integer expressions of different signedness: ‘int’ and ‘__pyx_t_2bx_3bbi_5types_bits32’ {aka ‘unsigned int’} [-Wsign-compare] 5252 | for (__pyx_v_i = (__pyx_v_s - __pyx_v_self->__pyx_base.start); __pyx_v_i < __pyx_t_2; __pyx_v_i++) { | ^ lib/bx/bbi/bigwig_file.c: In function ‘__pyx_f_2bx_3bbi_11bigwig_file_18BigWigBlockHandler_handle_block’: lib/bx/bbi/bigwig_file.c:3385:18: warning: ‘__pyx_v_val’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3385 | __pyx_t_2 = ((struct __pyx_vtabstruct_2bx_3bbi_11bigwig_file_BigWigBlockHandler *)__pyx_v_self->__pyx_base.__pyx_vtab)->handle_interval_value(__pyx_v_self, __pyx_v_s, __pyx_v_e, __pyx_v_val); if (unlikely(!__pyx_t_2)) __PYX_ERR(0, 75, __pyx_L1_error) | ~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ lib/bx/bbi/bigwig_file.c:3328:51: warning: ‘__pyx_v_e’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3328 | __pyx_t_11 = ((__pyx_v_e > __pyx_v_self->end) != 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ lib/bx/bbi/bigwig_file.c:3299:53: warning: ‘__pyx_v_s’ may be used uninitialized in this function [-Wmaybe-uninitialized] 3299 | __pyx_t_11 = ((__pyx_v_s < __pyx_v_self->start) != 0); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/lib/bx/bbi/bigwig_file.o -o /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bigwig_file.cpython-39-i386-linux-gnu.so building 'bx.bbi.bigbed_file' extension i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c lib/bx/bbi/bigbed_file.c -o build/temp.linux-i386-3.9/lib/bx/bbi/bigbed_file.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/bbi/bigbed_file.c:610: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/lib/bx/bbi/bigbed_file.o -o /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bigbed_file.cpython-39-i386-linux-gnu.so building 'bx.align._epo' extension i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c lib/bx/align/_epo.c -o build/temp.linux-i386-3.9/lib/bx/align/_epo.o In file included from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarraytypes.h:1822, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/ndarrayobject.h:12, from /usr/lib/python3/dist-packages/numpy/core/include/numpy/arrayobject.h:4, from lib/bx/align/_epo.c:610: /usr/lib/python3/dist-packages/numpy/core/include/numpy/npy_1_7_deprecated_api.h:17:2: warning: #warning "Using deprecated NumPy API, disable it with " "#define NPY_NO_DEPRECATED_API NPY_1_7_API_VERSION" [-Wcpp] 17 | #warning "Using deprecated NumPy API, disable it with " \ | ^~~~~~~ lib/bx/align/_epo.c: In function ‘__pyx_f_2bx_5align_4_epo_bed_union’: lib/bx/align/_epo.c:5417:237: warning: comparison of integer expressions of different signedness: ‘__pyx_t_5numpy_uint64_t’ {aka ‘long long unsigned int’} and ‘Py_ssize_t’ {aka ‘int’} [-Wsign-compare] 5417 | __pyx_t_4 = (((*__Pyx_BufPtrStrided2d(__pyx_t_5numpy_uint64_t *, __pyx_pybuffernd_elements.rcbuffer->pybuffer.buf, __pyx_t_11, __pyx_pybuffernd_elements.diminfo[0].strides, __pyx_t_12, __pyx_pybuffernd_elements.diminfo[1].strides)) <= __pyx_v_cen) != 0); | ^~ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/lib/bx/align/_epo.o -o /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/_epo.cpython-39-i386-linux-gnu.so building 'bx.arrays.bed' extension i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/arrays/bed.c -o build/temp.linux-i386-3.9/lib/bx/arrays/bed.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/lib/bx/arrays/bed.o -o /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/bed.cpython-39-i386-linux-gnu.so building 'bx.arrays.wiggle' extension i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/arrays/wiggle.c -o build/temp.linux-i386-3.9/lib/bx/arrays/wiggle.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/lib/bx/arrays/wiggle.o -o /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/wiggle.cpython-39-i386-linux-gnu.so building 'bx.align.sitemask._cpg' extension creating build/temp.linux-i386-3.9/lib/bx/align/sitemask i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/align/sitemask/_cpg.c -o build/temp.linux-i386-3.9/lib/bx/align/sitemask/_cpg.o i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c lib/bx/align/sitemask/find_cpg.c -o build/temp.linux-i386-3.9/lib/bx/align/sitemask/find_cpg.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/lib/bx/align/sitemask/_cpg.o build/temp.linux-i386-3.9/lib/bx/align/sitemask/find_cpg.o -o /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask/_cpg.cpython-39-i386-linux-gnu.so building 'bx.intseq.ngramcount' extension creating build/temp.linux-i386-3.9/lib/bx/intseq i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -I/usr/include/python3.9 -c lib/bx/intseq/ngramcount.c -o build/temp.linux-i386-3.9/lib/bx/intseq/ngramcount.o i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/lib/bx/intseq/ngramcount.o -o /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intseq/ngramcount.cpython-39-i386-linux-gnu.so building 'bx.misc._seekbzip2' extension creating build/temp.linux-i386-3.9/src/bunzip i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/bunzip -I/usr/include/python3.9 -c lib/bx/misc/_seekbzip2.c -o build/temp.linux-i386-3.9/lib/bx/misc/_seekbzip2.o i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc/bunzip -I/usr/include/python3.9 -c src/bunzip/micro-bunzip.c -o build/temp.linux-i386-3.9/src/bunzip/micro-bunzip.o src/bunzip/micro-bunzip.c: In function ‘get_bits’: src/bunzip/micro-bunzip.c:99:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘char’ [-Wsign-compare] 99 | while (bd->inbufBitCount dbufSize) return RETVAL_DATA_ERROR; | ^ src/bunzip/micro-bunzip.c:298:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 298 | while (bd->inbufBitCountmaxLen) { | ^ src/bunzip/micro-bunzip.c:400:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 400 | if(origPtr>=dbufCount) return RETVAL_DATA_ERROR; | ^~ src/bunzip/micro-bunzip.c: In function ‘start_bunzip’: src/bunzip/micro-bunzip.c:629:12: warning: pointer targets in assignment from ‘char *’ to ‘unsigned char *’ differ in signedness [-Wpointer-sign] 629 | bd->inbuf=inbuf; | ^ src/bunzip/micro-bunzip.c: In function ‘get_next_block’: src/bunzip/micro-bunzip.c:129:51: warning: ‘limit’ may be used uninitialized in this function [-Wmaybe-uninitialized] 129 | int dbufCount,nextSym,dbufSize,groupCount,*base,*limit,selector, | ^~~~~ src/bunzip/micro-bunzip.c:129:45: warning: ‘base’ may be used uninitialized in this function [-Wmaybe-uninitialized] 129 | int dbufCount,nextSym,dbufSize,groupCount,*base,*limit,selector, | ^~~~ src/bunzip/micro-bunzip.c:128:21: warning: ‘hufGroup’ may be used uninitialized in this function [-Wmaybe-uninitialized] 128 | struct group_data *hufGroup; | ^~~~~~~~ i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/python-bx-0.8.9=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/lib/bx/misc/_seekbzip2.o build/temp.linux-i386-3.9/src/bunzip/micro-bunzip.o -o /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/_seekbzip2.cpython-39-i386-linux-gnu.so running build_scripts creating build/scripts-3.9 copying and adjusting scripts/maf_filter_max_wc.py -> build/scripts-3.9 copying and adjusting scripts/one_field_per_line.py -> build/scripts-3.9 copying and adjusting scripts/align_print_template.py -> build/scripts-3.9 copying and adjusting scripts/maf_print_chroms.py -> build/scripts-3.9 copying and adjusting scripts/lav_to_maf.py -> build/scripts-3.9 copying and adjusting scripts/maf_truncate.py -> build/scripts-3.9 copying and adjusting scripts/axt_to_fasta.py -> build/scripts-3.9 copying and adjusting scripts/find_in_sorted_file.py -> build/scripts-3.9 copying and adjusting scripts/int_seqs_to_char_strings.py -> build/scripts-3.9 copying and adjusting scripts/prefix_lines.py -> build/scripts-3.9 copying and adjusting scripts/line_select.py -> build/scripts-3.9 copying and adjusting scripts/maf_col_counts.py -> build/scripts-3.9 copying and adjusting scripts/bed_count_by_interval.py -> build/scripts-3.9 copying and adjusting scripts/bed_bigwig_profile.py -> build/scripts-3.9 copying and adjusting scripts/maf_thread_for_species.py -> build/scripts-3.9 copying and adjusting scripts/maf_percent_identity.py -> build/scripts-3.9 copying and adjusting scripts/maf_chunk.py -> build/scripts-3.9 copying and adjusting scripts/bed_merge_overlapping.py -> build/scripts-3.9 copying and adjusting scripts/maf_gap_frequency.py -> build/scripts-3.9 copying and adjusting scripts/axt_extract_ranges.py -> build/scripts-3.9 copying and adjusting scripts/maf_col_counts_all.py -> build/scripts-3.9 copying and adjusting scripts/maf_region_coverage_by_src.py -> build/scripts-3.9 copying and adjusting scripts/maf_mask_cpg.py -> build/scripts-3.9 copying and adjusting scripts/lav_to_axt.py -> build/scripts-3.9 copying and adjusting scripts/maf_tile.py -> build/scripts-3.9 copying and adjusting scripts/maf_extract_chrom_ranges.py -> build/scripts-3.9 copying and adjusting scripts/pretty_table.py -> build/scripts-3.9 copying and adjusting scripts/wiggle_to_simple.py -> build/scripts-3.9 copying and adjusting scripts/maf_gc_content.py -> build/scripts-3.9 copying and adjusting scripts/gene_fourfold_sites.py -> build/scripts-3.9 copying and adjusting scripts/bed_rand_intersect.py -> build/scripts-3.9 copying and adjusting scripts/maf_limit_to_species.py -> build/scripts-3.9 copying and adjusting scripts/bed_subtract_basewise.py -> build/scripts-3.9 copying and adjusting scripts/maf_percent_columns_matching.py -> build/scripts-3.9 copying and adjusting scripts/maf_to_axt.py -> build/scripts-3.9 copying and adjusting scripts/bed_intersect.py -> build/scripts-3.9 copying and adjusting scripts/axt_to_lav.py -> build/scripts-3.9 copying and adjusting scripts/bed_extend_to.py -> build/scripts-3.9 copying and adjusting scripts/bnMapper.py -> build/scripts-3.9 copying and adjusting scripts/table_add_column.py -> build/scripts-3.9 copying and adjusting scripts/maf_build_index.py -> build/scripts-3.9 copying and adjusting scripts/maf_word_frequency.py -> build/scripts-3.9 copying and adjusting scripts/maf_to_fasta.py -> build/scripts-3.9 copying and adjusting scripts/maf_shuffle_columns.py -> build/scripts-3.9 copying and adjusting scripts/bed_coverage.py -> build/scripts-3.9 copying and adjusting scripts/qv_to_bqv.py -> build/scripts-3.9 copying and adjusting scripts/wiggle_to_array_tree.py -> build/scripts-3.9 copying and adjusting scripts/maf_count.py -> build/scripts-3.9 copying and adjusting scripts/aggregate_scores_in_intervals.py -> build/scripts-3.9 copying and adjusting scripts/wiggle_to_binned_array.py -> build/scripts-3.9 copying and adjusting scripts/bed_complement.py -> build/scripts-3.9 copying and adjusting scripts/maf_mapping_word_frequency.py -> build/scripts-3.9 copying and adjusting scripts/mask_quality.py -> build/scripts-3.9 copying and adjusting scripts/nib_chrom_intervals_to_fasta.py -> build/scripts-3.9 copying and adjusting scripts/nib_length.py -> build/scripts-3.9 copying and adjusting scripts/bed_intersect_basewise.py -> build/scripts-3.9 copying and adjusting scripts/maf_to_int_seqs.py -> build/scripts-3.9 copying and adjusting scripts/mMK_bitset.py -> build/scripts-3.9 copying and adjusting scripts/maf_to_concat_fasta.py -> build/scripts-3.9 copying and adjusting scripts/maf_covered_ranges.py -> build/scripts-3.9 copying and adjusting scripts/maf_print_scores.py -> build/scripts-3.9 copying and adjusting scripts/maf_extract_ranges_indexed.py -> build/scripts-3.9 copying and adjusting scripts/maf_covered_regions.py -> build/scripts-3.9 copying and adjusting scripts/interval_join.py -> build/scripts-3.9 copying and adjusting scripts/maf_mean_length_ungapped_piece.py -> build/scripts-3.9 copying and adjusting scripts/table_filter.py -> build/scripts-3.9 copying and adjusting scripts/maf_filter.py -> build/scripts-3.9 copying and adjusting scripts/ucsc_gene_table_to_intervals.py -> build/scripts-3.9 copying and adjusting scripts/maf_split_by_src.py -> build/scripts-3.9 copying and adjusting scripts/maf_extract_ranges.py -> build/scripts-3.9 copying and adjusting scripts/tfloc_summary.py -> build/scripts-3.9 copying and adjusting scripts/axt_to_maf.py -> build/scripts-3.9 copying and adjusting scripts/out_to_chain.py -> build/scripts-3.9 copying and adjusting scripts/bed_count_overlapping.py -> build/scripts-3.9 copying and adjusting scripts/div_snp_table_chr.py -> build/scripts-3.9 copying and adjusting scripts/nib_intervals_to_fasta.py -> build/scripts-3.9 copying and adjusting scripts/maf_interval_alignibility.py -> build/scripts-3.9 copying and adjusting scripts/maf_div_sites.py -> build/scripts-3.9 copying and adjusting scripts/maf_randomize.py -> build/scripts-3.9 copying and adjusting scripts/maf_species_in_all_files.py -> build/scripts-3.9 copying and adjusting scripts/maf_drop_overlapping.py -> build/scripts-3.9 copying and adjusting scripts/interval_count_intersections.py -> build/scripts-3.9 copying and adjusting scripts/lzop_build_offset_table.py -> build/scripts-3.9 copying and adjusting scripts/maf_tile_2bit.py -> build/scripts-3.9 copying and adjusting scripts/bed_coverage_by_interval.py -> build/scripts-3.9 copying and adjusting scripts/bed_build_windows.py -> build/scripts-3.9 copying and adjusting scripts/maf_chop.py -> build/scripts-3.9 copying and adjusting scripts/maf_select.py -> build/scripts-3.9 copying and adjusting scripts/wiggle_to_chr_binned_array.py -> build/scripts-3.9 copying and adjusting scripts/bed_diff_basewise_summary.py -> build/scripts-3.9 copying and adjusting scripts/random_lines.py -> build/scripts-3.9 copying and adjusting scripts/maf_translate_chars.py -> build/scripts-3.9 copying and adjusting scripts/get_scores_in_intervals.py -> build/scripts-3.9 copying and adjusting scripts/maf_tile_2.py -> build/scripts-3.9 changing mode of build/scripts-3.9/maf_filter_max_wc.py from 644 to 755 changing mode of build/scripts-3.9/one_field_per_line.py from 644 to 755 changing mode of build/scripts-3.9/align_print_template.py from 644 to 755 changing mode of build/scripts-3.9/maf_print_chroms.py from 644 to 755 changing mode of build/scripts-3.9/lav_to_maf.py from 644 to 755 changing mode of build/scripts-3.9/maf_truncate.py from 644 to 755 changing mode of build/scripts-3.9/axt_to_fasta.py from 644 to 755 changing mode of build/scripts-3.9/find_in_sorted_file.py from 644 to 755 changing mode of build/scripts-3.9/int_seqs_to_char_strings.py from 644 to 755 changing mode of build/scripts-3.9/prefix_lines.py from 644 to 755 changing mode of build/scripts-3.9/line_select.py from 644 to 755 changing mode of build/scripts-3.9/maf_col_counts.py from 644 to 755 changing mode of build/scripts-3.9/bed_count_by_interval.py from 644 to 755 changing mode of build/scripts-3.9/bed_bigwig_profile.py from 644 to 755 changing mode of build/scripts-3.9/maf_thread_for_species.py from 644 to 755 changing mode of build/scripts-3.9/maf_percent_identity.py from 644 to 755 changing mode of build/scripts-3.9/maf_chunk.py from 644 to 755 changing mode of build/scripts-3.9/bed_merge_overlapping.py from 644 to 755 changing mode of build/scripts-3.9/maf_gap_frequency.py from 644 to 755 changing mode of build/scripts-3.9/axt_extract_ranges.py from 644 to 755 changing mode of build/scripts-3.9/maf_col_counts_all.py from 644 to 755 changing mode of build/scripts-3.9/maf_region_coverage_by_src.py from 644 to 755 changing mode of build/scripts-3.9/maf_mask_cpg.py from 644 to 755 changing mode of build/scripts-3.9/lav_to_axt.py from 644 to 755 changing mode of build/scripts-3.9/maf_tile.py from 644 to 755 changing mode of build/scripts-3.9/maf_extract_chrom_ranges.py from 644 to 755 changing mode of build/scripts-3.9/pretty_table.py from 644 to 755 changing mode of build/scripts-3.9/wiggle_to_simple.py from 644 to 755 changing mode of build/scripts-3.9/maf_gc_content.py from 644 to 755 changing mode of build/scripts-3.9/gene_fourfold_sites.py from 644 to 755 changing mode of build/scripts-3.9/bed_rand_intersect.py from 644 to 755 changing mode of build/scripts-3.9/maf_limit_to_species.py from 644 to 755 changing mode of build/scripts-3.9/bed_subtract_basewise.py from 644 to 755 changing mode of build/scripts-3.9/maf_percent_columns_matching.py from 644 to 755 changing mode of build/scripts-3.9/maf_to_axt.py from 644 to 755 changing mode of build/scripts-3.9/bed_intersect.py from 644 to 755 changing mode of build/scripts-3.9/axt_to_lav.py from 644 to 755 changing mode of build/scripts-3.9/bed_extend_to.py from 644 to 755 changing mode of build/scripts-3.9/bnMapper.py from 644 to 755 changing mode of build/scripts-3.9/table_add_column.py from 644 to 755 changing mode of build/scripts-3.9/maf_build_index.py from 644 to 755 changing mode of build/scripts-3.9/maf_word_frequency.py from 644 to 755 changing mode of build/scripts-3.9/maf_to_fasta.py from 644 to 755 changing mode of build/scripts-3.9/maf_shuffle_columns.py from 644 to 755 changing mode of build/scripts-3.9/bed_coverage.py from 644 to 755 changing mode of build/scripts-3.9/qv_to_bqv.py from 644 to 755 changing mode of build/scripts-3.9/wiggle_to_array_tree.py from 644 to 755 changing mode of build/scripts-3.9/maf_count.py from 644 to 755 changing mode of build/scripts-3.9/aggregate_scores_in_intervals.py from 644 to 755 changing mode of build/scripts-3.9/wiggle_to_binned_array.py from 644 to 755 changing mode of build/scripts-3.9/bed_complement.py from 644 to 755 changing mode of build/scripts-3.9/maf_mapping_word_frequency.py from 644 to 755 changing mode of build/scripts-3.9/mask_quality.py from 644 to 755 changing mode of build/scripts-3.9/nib_chrom_intervals_to_fasta.py from 644 to 755 changing mode of build/scripts-3.9/nib_length.py from 644 to 755 changing mode of build/scripts-3.9/bed_intersect_basewise.py from 644 to 755 changing mode of build/scripts-3.9/maf_to_int_seqs.py from 644 to 755 changing mode of build/scripts-3.9/mMK_bitset.py from 644 to 755 changing mode of build/scripts-3.9/maf_to_concat_fasta.py from 644 to 755 changing mode of build/scripts-3.9/maf_covered_ranges.py from 644 to 755 changing mode of build/scripts-3.9/maf_print_scores.py from 644 to 755 changing mode of build/scripts-3.9/maf_extract_ranges_indexed.py from 644 to 755 changing mode of build/scripts-3.9/maf_covered_regions.py from 644 to 755 changing mode of build/scripts-3.9/interval_join.py from 644 to 755 changing mode of build/scripts-3.9/maf_mean_length_ungapped_piece.py from 644 to 755 changing mode of build/scripts-3.9/table_filter.py from 644 to 755 changing mode of build/scripts-3.9/maf_filter.py from 644 to 755 changing mode of build/scripts-3.9/ucsc_gene_table_to_intervals.py from 644 to 755 changing mode of build/scripts-3.9/maf_split_by_src.py from 644 to 755 changing mode of build/scripts-3.9/maf_extract_ranges.py from 644 to 755 changing mode of build/scripts-3.9/tfloc_summary.py from 644 to 755 changing mode of build/scripts-3.9/axt_to_maf.py from 644 to 755 changing mode of build/scripts-3.9/out_to_chain.py from 644 to 755 changing mode of build/scripts-3.9/bed_count_overlapping.py from 644 to 755 changing mode of build/scripts-3.9/div_snp_table_chr.py from 644 to 755 changing mode of build/scripts-3.9/nib_intervals_to_fasta.py from 644 to 755 changing mode of build/scripts-3.9/maf_interval_alignibility.py from 644 to 755 changing mode of build/scripts-3.9/maf_div_sites.py from 644 to 755 changing mode of build/scripts-3.9/maf_randomize.py from 644 to 755 changing mode of build/scripts-3.9/maf_species_in_all_files.py from 644 to 755 changing mode of build/scripts-3.9/maf_drop_overlapping.py from 644 to 755 changing mode of build/scripts-3.9/interval_count_intersections.py from 644 to 755 changing mode of build/scripts-3.9/lzop_build_offset_table.py from 644 to 755 changing mode of build/scripts-3.9/maf_tile_2bit.py from 644 to 755 changing mode of build/scripts-3.9/bed_coverage_by_interval.py from 644 to 755 changing mode of build/scripts-3.9/bed_build_windows.py from 644 to 755 changing mode of build/scripts-3.9/maf_chop.py from 644 to 755 changing mode of build/scripts-3.9/maf_select.py from 644 to 755 changing mode of build/scripts-3.9/wiggle_to_chr_binned_array.py from 644 to 755 changing mode of build/scripts-3.9/bed_diff_basewise_summary.py from 644 to 755 changing mode of build/scripts-3.9/random_lines.py from 644 to 755 changing mode of build/scripts-3.9/maf_translate_chars.py from 644 to 755 changing mode of build/scripts-3.9/get_scores_in_intervals.py from 644 to 755 changing mode of build/scripts-3.9/maf_tile_2.py from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild pybuild:284: cp -r /build/python-bx-0.8.9/test_data /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/ I: pybuild base:232: cd /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build; python3.9 -m nose -v nose.config: INFO: Ignoring files matching ['^\\.', '^_', '^setup\\.py$'] nose.selector: INFO: /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/array_tree.cpython-39-i386-linux-gnu.so is executable; skipped nose.selector: INFO: /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/bed.cpython-39-i386-linux-gnu.so is executable; skipped nose.selector: INFO: /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/wiggle.cpython-39-i386-linux-gnu.so is executable; skipped nose.selector: INFO: /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bbi_file.cpython-39-i386-linux-gnu.so is executable; skipped nose.selector: INFO: /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bigbed_file.cpython-39-i386-linux-gnu.so is executable; skipped nose.selector: INFO: /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bigwig_file.cpython-39-i386-linux-gnu.so is executable; skipped nose.selector: INFO: /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bpt_file.cpython-39-i386-linux-gnu.so is executable; skipped nose.selector: INFO: /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/cirtree_file.cpython-39-i386-linux-gnu.so is executable; skipped nose.selector: INFO: /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bitset.cpython-39-i386-linux-gnu.so is executable; skipped nose.selector: INFO: /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/cluster.cpython-39-i386-linux-gnu.so is executable; skipped nose.selector: INFO: /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/intersection.cpython-39-i386-linux-gnu.so is executable; skipped nose.selector: INFO: /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intseq/ngramcount.cpython-39-i386-linux-gnu.so is executable; skipped nose.selector: INFO: /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/bgzf.cpython-39-i386-linux-gnu.so is executable; skipped bx.align.sitemask.sitemask_tests.test_cpg_inclusive ... ok bx.align.sitemask.sitemask_tests.test_cpg_restricted ... ok bx.align.sitemask.sitemask_tests.test_non_cpg ... ok test_ci (bx.align.epo_tests.TestBed) ... ok test_elem_u (bx.align.epo_tests.TestBed) ... ok test_make_chain (bx.align.epo_tests.TestEpo) ... ok test_out (bx.align.epo_tests.TestEpo) ... ok test_rem_dash (bx.align.epo_tests.TestEpo) ... ok testReader (bx.align.lav_tests.lavTestCase) ... ok bx.align.maf_tests.test_reader ... ok bx.align.maf_tests.test_writer ... ok bx.align.maf_tests.test_slice ... ok bx.align.maf_tests.test_with_synteny ... ok bx.align.maf_tests.test_write_with_synteny ... ok test_accumulate (bx.align.score_tests.BasicTests) ... ok test_align (bx.align.score_tests.BasicTests) ... ok test_asymm_scoring (bx.align.score_tests.BasicTests) ... ok test_nonsymm_scoring (bx.align.score_tests.BasicTests) ... ok test_scoring_text (bx.align.score_tests.BasicTests) ... ok test_big (bx.arrays.array_tree_tests.TestArrayTree) ... ok test_get_frequencies (bx.arrays.array_tree_tests.TestArrayTree) ... ok test_get_leaf (bx.arrays.array_tree_tests.TestArrayTree) ... ok test_get_summary (bx.arrays.array_tree_tests.TestArrayTree) ... ok test_higher_level_than_tree (bx.arrays.array_tree_tests.TestArrayTree) ... ok test_wrong_dictkey (bx.arrays.array_tree_tests.TestArrayTree) ... ok test_get_leaf (bx.bbi.bigwig_tests.TestBigWig) ... ok test_get_summary (bx.bbi.bigwig_tests.TestBigWig) ... ok test_wrong_nochrom (bx.bbi.bigwig_tests.TestBigWig) ... ok Test summaries line 0: chr1 10000 20000 10 mean -0.175576 -0.05 ... ok Test summaries line 1: chr1 10000 20000 10 min -2.525 -3.84387 ... ok Test summaries line 2: chr1 10000 20000 10 max 0.0508425 0.289 ... ok Test summaries line 3: chr1 10000 20000 10 std 0.700141 0.52916 ... ok Test summaries line 4: chr1 10000 12000 10 mean n/a n/a n/a n/a ... /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bigwig_tests.py:80: RuntimeWarning: invalid value encountered in true_divide print(sd.sum_data / sd.valid_count) /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bigwig_tests.py:82: RuntimeWarning: invalid value encountered in true_divide assert allclose(sd.sum_data / sd.valid_count, values) ok Test summaries line 5: chr1 10000 12000 10 min n/a n/a n/a n/a ... ok Test summaries line 6: chr1 10000 12000 10 max n/a n/a n/a n/a ... ok Test summaries line 7: chr1 10000 12000 10 std n/a n/a n/a n/a ... ok Test summaries line 8: chr1 10000 20000 100 mean n/a n/a n/a n/ ... ok Test summaries line 9: chr1 10000 20000 100 min n/a n/a n/a n/a ... ok Test summaries line 10: chr1 10000 20000 100 max n/a n/a n/a n/a ... ok Test summaries line 11: chr1 10000 20000 100 std n/a n/a n/a n/a ... ok Test summaries line 12: chr1 10000 12000 100 mean n/a n/a n/a n/ ... ok Test summaries line 13: chr1 10000 12000 100 min n/a n/a n/a n/a ... ok Test summaries line 14: chr1 10000 12000 100 max n/a n/a n/a n/a ... ok Test summaries line 15: chr1 10000 12000 100 std n/a n/a n/a n/a ... ok Test summaries line 16: chr1 10000 20000 1000 mean n/a n/a n/a n ... ok Test summaries line 17: chr1 10000 20000 1000 min n/a n/a n/a n/ ... ok Test summaries line 18: chr1 10000 20000 1000 max n/a n/a n/a n/ ... ok Test summaries line 19: chr1 10000 20000 1000 std n/a n/a n/a n/ ... ok Test summaries line 20: chr1 10000 12000 1000 mean n/a n/a n/a n ... ok Test summaries line 21: chr1 10000 12000 1000 min n/a n/a n/a n/ ... ok Test summaries line 22: chr1 10000 12000 1000 max n/a n/a n/a n/ ... ok Test summaries line 23: chr1 10000 12000 1000 std n/a n/a n/a n/ ... ok test_another (bx.intervals.cluster_tests.TestCluster) ... ok test_distance (bx.intervals.cluster_tests.TestCluster) ... ok test_duplicates (bx.intervals.cluster_tests.TestCluster) ... ok test_easymerge (bx.intervals.cluster_tests.TestCluster) ... ok test_hardmerge (bx.intervals.cluster_tests.TestCluster) ... ok test_large_sorted (bx.intervals.cluster_tests.TestCluster) ... ok test_larger (bx.intervals.cluster_tests.TestCluster) ... ok test_merge_case (bx.intervals.cluster_tests.TestCluster) ... ok test_merge_left_right (bx.intervals.cluster_tests.TestCluster) ... ok test_minregions (bx.intervals.cluster_tests.TestCluster) ... ok test_none (bx.intervals.cluster_tests.TestCluster) ... ok test_startbeforeend (bx.intervals.cluster_tests.TestCluster) ... ok test_trivial (bx.intervals.cluster_tests.TestCluster) ... ok test_empty (bx.intervals.intersection_tests.IntervalTreeTest) ... ok test_find (bx.intervals.intersection_tests.IntervalTreeTest) ... ok test_public_interval (bx.intervals.intersection_tests.IntervalTreeTest) ... ok test_traverse (bx.intervals.intersection_tests.IntervalTreeTest) ... ok test_count (bx.intervals.intersection_tests.LotsaTestCase) ... ok test_find (bx.intervals.intersection_tests.LotsaTestCase) ... ok test_max_dist (bx.intervals.intersection_tests.LotsaTestCase) ... ok test_left (bx.intervals.intersection_tests.NeighborTestCase) ... ok test_right (bx.intervals.intersection_tests.NeighborTestCase) ... ok test_toomany (bx.intervals.intersection_tests.NeighborTestCase) ... ok test_downstream (bx.intervals.intersection_tests.UpDownStreamTestCase) ... ok test_n (bx.intervals.intersection_tests.UpDownStreamTestCase) ... ok test_upstream (bx.intervals.intersection_tests.UpDownStreamTestCase) ... ok bx.misc.bgzf_tests.test_bgzf ... ok bx.misc.cdb_tests.test ... ok bx.motif.io.transfac_tests.test_reader ... ok bx.motif.pwm_tests.test_create ... ok bx.motif.pwm_tests.test_scoring ... ok bx.motif.pwm_tests.test_scoring_with_gaps ... ok check tree parsing 0 ... ok check tree parsing 1 ... ok check tree parsing 2 ... ok check tree parsing 3 ... ok check tree parsing 4 ... ok check tree parsing 5 ... ok check tree parsing 6 ... ok check tree parsing 7 ... ok bx.phylo.phast_tests.test_parser ... ok testReader (bx.pwm.pwm_tests.PWMTestCase) ... ok test_get (bx.seq.fasta_tests.FASTATestCase) ... ok test_get (bx.seq.nib_tests.NIBTestCase) ... ok test_get (bx.seq.qdna_tests.QDNATestCase) ... ok test_get_fasta (bx.seq.seq_tests.SEQTestCase) ... ok test_get_nib (bx.seq.seq_tests.SEQTestCase) ... ok test_get_qdna (bx.seq.seq_tests.SEQTestCase) ... ok test_get_reader (bx.seq.seq_tests.SEQTestCase) ... ok Nose test generator ... ok Nose test generator ... ok Nose test generator ... ok bx.binned_array_tests.test_simple ... ok bx.binned_array_tests.test_file ... ok bx.binned_array_tests.test_file_lzo ... ok bx.binned_array_tests.test_binned_array_writer ... ok test_access (bx.bitset_tests.BinnedBitSetTests) ... ok test_and (bx.bitset_tests.BinnedBitSetTests) ... ok test_count (bx.bitset_tests.BinnedBitSetTests) ... ok test_find (bx.bitset_tests.BinnedBitSetTests) ... ok test_not (bx.bitset_tests.BinnedBitSetTests) ... ok test_or (bx.bitset_tests.BinnedBitSetTests) ... ok test_overflow_access (bx.bitset_tests.BinnedBitSetTests) ... ok test_overflow_create (bx.bitset_tests.BinnedBitSetTests) ... ok test_range_access (bx.bitset_tests.BinnedBitSetTests) ... ok test_access (bx.bitset_tests.BitSetTests) ... ok test_and (bx.bitset_tests.BitSetTests) ... ok test_count (bx.bitset_tests.BitSetTests) ... ok test_find (bx.bitset_tests.BitSetTests) ... ok test_not (bx.bitset_tests.BitSetTests) ... ok test_or (bx.bitset_tests.BitSetTests) ... ok test_overflow_access (bx.bitset_tests.BitSetTests) ... ok test_overflow_create (bx.bitset_tests.BitSetTests) ... ok test_range_access (bx.bitset_tests.BitSetTests) ... ok bx.interval_index_file_tests.test_offsets ... ok bx.interval_index_file_tests.test_interval_index_file ... ok bx.interval_index_file_tests.test_zero ... ok test_interval_reader (bx.wiggle_tests.TestWiggleReader) ... ok test_reader (bx.wiggle_tests.TestWiggleReader) ... ok bx_extras.fpconst_tests.test_all ... ok nose.selector: INFO: /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/bbi_tests/make_expectation.sh is executable; skipped ---------------------------------------------------------------------- Ran 132 tests in 8.508s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/python-bx-0.8.9/debian/python3-bx running install running build running build_py running build_ext skipping 'lib/bx/bitset.c' Cython extension (up-to-date) skipping 'lib/bx/intervals/intersection.c' Cython extension (up-to-date) skipping 'lib/bx/align/_core.c' Cython extension (up-to-date) skipping 'lib/bx/seq/_nib.c' Cython extension (up-to-date) skipping 'lib/bx/seq/_twobit.c' Cython extension (up-to-date) skipping 'lib/bx/_seqmapping.c' Cython extension (up-to-date) skipping 'lib/bx/misc/bgzf.c' Cython extension (up-to-date) skipping 'lib/bx/intervals/cluster.c' Cython extension (up-to-date) skipping 'lib/bx/pwm/_position_weight_matrix.c' Cython extension (up-to-date) skipping 'lib/bx/motif/_pwm.c' Cython extension (up-to-date) skipping 'lib/bx/arrays/array_tree.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bpt_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/cirtree_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bbi_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bigwig_file.c' Cython extension (up-to-date) skipping 'lib/bx/bbi/bigbed_file.c' Cython extension (up-to-date) skipping 'lib/bx/align/_epo.c' Cython extension (up-to-date) skipping 'lib/bx/arrays/bed.c' Cython extension (up-to-date) skipping 'lib/bx/arrays/wiggle.c' Cython extension (up-to-date) skipping 'lib/bx/align/sitemask/_cpg.c' Cython extension (up-to-date) skipping 'lib/bx/intseq/ngramcount.c' Cython extension (up-to-date) skipping 'lib/bx/misc/_seekbzip2.c' Cython extension (up-to-date) running build_scripts running install_lib creating /build/python-bx-0.8.9/debian/python3-bx/usr creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9 creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/psyco_full.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras/__pycache__/pyparsing.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras/__pycache__/lrucache.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras/__pycache__/fpconst_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras/__pycache__/fpconst.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras/pyparsing.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras/stats.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras/fpconst_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras/__init__.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras/pstat.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras/fpconst.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx_extras/lrucache.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/epo_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/epo_tests/epo_547_hs_mm_12way_mammals_65.chain -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/epo_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/epo_tests/epo_547_hs_mm_12way_mammals_65.out -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/epo_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/epo_tests/hpeaks.mapped.nopeak2.bed4 -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/epo_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/epo_tests/hg19.mm9.rBest.chain.gz -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/epo_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/epo_tests/hpeaks.mapped.bed12 -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/epo_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/epo_tests/hpeaks.mapped.bed4 -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/epo_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/epo_tests/hg19_one_peak.mapped.bed -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/epo_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/epo_tests/hg19.chrom.sizes -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/epo_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/epo_tests/hpeaks.bed -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/epo_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/epo_tests/mm9.chrom.sizes -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/epo_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/epo_tests/hg19_one_peak.bed -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/epo_tests creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/maf_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/maf_tests/dcking_ghp074.maf -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/maf_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/maf_tests/dcking_ghp074.bed -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/maf_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/maf_tests/mm8_chr7_tiny.maf -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/maf_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/maf_tests/mm8_chr7_tiny.maf.index -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/maf_tests creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/lav_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/lav_tests/orange.nib -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/lav_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/lav_tests/orange.fa -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/lav_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/lav_tests/apple.fa -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/lav_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/lav_tests/apple_orange.lav -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/lav_tests creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/bbi_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/bbi_tests/test.wig -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/bbi_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/bbi_tests/make_expectation.sh -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/bbi_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/bbi_tests/test.regions -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/bbi_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/bbi_tests/test.bw -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/bbi_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/bbi_tests/test.expectation -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/bbi_tests creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/seq_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/seq_tests/test.nib -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/seq_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/seq_tests/testN.fa -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/seq_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/seq_tests/testN.2bit -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/seq_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/seq_tests/test.2bit -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/seq_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/seq_tests/test2.fa -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/seq_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/seq_tests/test.fa -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/seq_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/seq_tests/testMask.fa -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/seq_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/seq_tests/test.qdna -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/seq_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/seq_tests/testMask.2bit -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/seq_tests creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/bgzf_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/bgzf_tests/test.txt.gz -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/bgzf_tests copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/test_data/bgzf_tests/test.txt -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/test_data/bgzf_tests creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seqmapping_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/wiggle_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/twobit.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/core.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/_twobit.cpython-39-i386-linux-gnu.so -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/fasta.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/qdna_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__pycache__/twobit.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__pycache__/nib.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__pycache__/qdna.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__pycache__/qdna_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__pycache__/core.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__pycache__/nib_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__pycache__/fasta.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__pycache__/seq.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__pycache__/twobit_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__pycache__/fasta_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__pycache__/seq_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/nib.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/twobit_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/_nib.cpython-39-i386-linux-gnu.so -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/seq_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/fasta_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/qdna.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/__init__.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/nib_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seq/seq.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/arrays copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/array_tree_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/arrays copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/array_tree.cpython-39-i386-linux-gnu.so -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/arrays copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/wiggle.cpython-39-i386-linux-gnu.so -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/arrays creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/arrays/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/arrays/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/__pycache__/array_tree_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/arrays/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/bed.cpython-39-i386-linux-gnu.so -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/arrays copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/arrays/__init__.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/arrays copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/interval_index_file_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo/__pycache__/phast.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo/__pycache__/phast_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo/__pycache__/newick_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo/__pycache__/newick.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo/phast_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo/newick.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo/__init__.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo/newick_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/phylo/phast.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/gene_reader.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bigbed_file.cpython-39-i386-linux-gnu.so -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/__pycache__/bigwig_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/cirtree_file.cpython-39-i386-linux-gnu.so -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bpt_file.cpython-39-i386-linux-gnu.so -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bigwig_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/__init__.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bbi_file.cpython-39-i386-linux-gnu.so -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bbi/bigwig_file.cpython-39-i386-linux-gnu.so -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/bgzf.cpython-39-i386-linux-gnu.so -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/seeklzop.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/binary_file.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/readlengths.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/filecache.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__pycache__/filecache.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__pycache__/binary_file.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__pycache__/seekbzip2.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__pycache__/cdb.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__pycache__/bgzf_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__pycache__/readlengths.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__pycache__/seekbzip2_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__pycache__/seeklzop_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__pycache__/cdb_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__pycache__/filecache_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__pycache__/seeklzop.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/cdb.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/seeklzop_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/seekbzip2_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/cdb_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/filecache_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/__init__.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/seekbzip2.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/_seekbzip2.cpython-39-i386-linux-gnu.so -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/misc/bgzf_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bitset_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/binned_array_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/__pycache__/seqmapping_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/__pycache__/interval_index_file.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/__pycache__/wiggle_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/__pycache__/seqmapping.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/__pycache__/binned_array_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/__pycache__/wiggle.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/__pycache__/interval_index_file_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/__pycache__/bitset_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/__pycache__/binned_array.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/__pycache__/filter.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__pycache__ creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/axt.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/core.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/score_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/lav_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/_epo.cpython-39-i386-linux-gnu.so -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/__pycache__/maf.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/__pycache__/maf_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/__pycache__/epo.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/__pycache__/score.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/__pycache__/core.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/__pycache__/lav_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/__pycache__/epo_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/__pycache__/lav.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/__pycache__/score_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/_core.cpython-39-i386-linux-gnu.so -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/maf_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/maf.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/lav.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/epo.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools/tile.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools/chop.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools/__pycache__/chop.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools/__pycache__/tile.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools/__pycache__/thread.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools/__pycache__/fuse.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools/thread.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools/__init__.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/tools/fuse.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/score.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/__init__.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/epo_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask/core.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask/sitemask_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask/__pycache__/cpg.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask/__pycache__/core.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask/__pycache__/sitemask_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask/_cpg.cpython-39-i386-linux-gnu.so -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask/quality.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask/__init__.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/align/sitemask/cpg.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intseq creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intseq/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intseq/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intseq/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intseq/ngramcount.cpython-39-i386-linux-gnu.so -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intseq copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intseq/__init__.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intseq copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/seqmapping.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/tabular creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/tabular/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/tabular/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/tabular/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/tabular/__init__.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/tabular copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/tabular/io.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/tabular copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/interval_index_file.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/logo copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/logo/template.ps -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/logo creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/logo/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/logo/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/logo/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/logo/__init__.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/logo copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/pwm.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/io copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/io/transfac_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/io copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/io/transfac.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/io creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/io/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/io/__pycache__/transfac_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/io/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/io/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/io/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/io/__pycache__/transfac.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/io/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/io/__init__.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/io creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/__pycache__/pwm_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/__pycache__/pwm.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/__init__.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/pwm_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/motif/_pwm.cpython-39-i386-linux-gnu.so -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/binned_array.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/cluster_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations/coverage.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations/quicksect.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations/merge.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations/complement.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations/base_coverage.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations/join.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations/find_clusters.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations/concat.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations/__init__.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations/intersect.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/operations/subtract.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/__pycache__/cluster_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/__pycache__/intersection_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/intersection_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/intersection.cpython-39-i386-linux-gnu.so -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/__init__.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/random_intervals.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/cluster.cpython-39-i386-linux-gnu.so -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/intervals/io.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/__init__.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/_seqmapping.cpython-39-i386-linux-gnu.so -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/pwm_score_positions.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/pwm_score_maf.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/_position_weight_matrix.cpython-39-i386-linux-gnu.so -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/bed_score_aligned_string.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/position_weight_matrix.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/__pycache__/pwm_tests.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/__pycache__/position_weight_matrix.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/maf_select_motifs.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/pwm_score_motifs.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/bed_score_aligned_pwm.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/__init__.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/pwm/pwm_tests.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/cookbook/progress_bar.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook creating /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/cookbook/__pycache__/__init__.cpython-39.pyc -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook/__pycache__ copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/cookbook/argparse.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/cookbook/__init__.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/cookbook/attribute.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/cookbook/doc_optparse.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/wiggle.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bitset_builders.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bitset_utils.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/bitset.cpython-39-i386-linux-gnu.so -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx copying /build/python-bx-0.8.9/.pybuild/cpython3_3.9_bx-python/build/bx/filter.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/psyco_full.py to psyco_full.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/pyparsing.py to pyparsing.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/stats.py to stats.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/fpconst_tests.py to fpconst_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/pstat.py to pstat.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/fpconst.py to fpconst.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_extras/lrucache.py to lrucache.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seqmapping_tests.py to seqmapping_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/wiggle_tests.py to wiggle_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/twobit.py to twobit.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/core.py to core.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/fasta.py to fasta.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/qdna_tests.py to qdna_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/nib.py to nib.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/twobit_tests.py to twobit_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/seq_tests.py to seq_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/fasta_tests.py to fasta_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/qdna.py to qdna.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/nib_tests.py to nib_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seq/seq.py to seq.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/arrays/array_tree_tests.py to array_tree_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/arrays/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/interval_index_file_tests.py to interval_index_file_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo/phast_tests.py to phast_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo/newick.py to newick.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo/newick_tests.py to newick_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/phylo/phast.py to phast.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/gene_reader.py to gene_reader.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi/bigwig_tests.py to bigwig_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bbi/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/seeklzop.py to seeklzop.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/binary_file.py to binary_file.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/readlengths.py to readlengths.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/filecache.py to filecache.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/cdb.py to cdb.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/seeklzop_tests.py to seeklzop_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/seekbzip2_tests.py to seekbzip2_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/cdb_tests.py to cdb_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/filecache_tests.py to filecache_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/seekbzip2.py to seekbzip2.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/misc/bgzf_tests.py to bgzf_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bitset_tests.py to bitset_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/binned_array_tests.py to binned_array_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/axt.py to axt.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/core.py to core.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/score_tests.py to score_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/lav_tests.py to lav_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/maf_tests.py to maf_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/maf.py to maf.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/lav.py to lav.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/epo.py to epo.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools/tile.py to tile.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools/chop.py to chop.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools/thread.py to thread.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/tools/fuse.py to fuse.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/score.py to score.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/epo_tests.py to epo_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask/core.py to core.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask/sitemask_tests.py to sitemask_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask/quality.py to quality.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/align/sitemask/cpg.py to cpg.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intseq/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/seqmapping.py to seqmapping.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/tabular/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/tabular/io.py to io.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/interval_index_file.py to interval_index_file.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/logo/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/pwm.py to pwm.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/io/transfac_tests.py to transfac_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/io/transfac.py to transfac.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/io/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/motif/pwm_tests.py to pwm_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/binned_array.py to binned_array.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/cluster_tests.py to cluster_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/coverage.py to coverage.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/quicksect.py to quicksect.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/merge.py to merge.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/complement.py to complement.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/base_coverage.py to base_coverage.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/join.py to join.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/find_clusters.py to find_clusters.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/concat.py to concat.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/intersect.py to intersect.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/operations/subtract.py to subtract.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/intersection_tests.py to intersection_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/random_intervals.py to random_intervals.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/intervals/io.py to io.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/pwm_score_positions.py to pwm_score_positions.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/pwm_score_maf.py to pwm_score_maf.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/bed_score_aligned_string.py to bed_score_aligned_string.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/position_weight_matrix.py to position_weight_matrix.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/maf_select_motifs.py to maf_select_motifs.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/pwm_score_motifs.py to pwm_score_motifs.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/bed_score_aligned_pwm.py to bed_score_aligned_pwm.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/pwm/pwm_tests.py to pwm_tests.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook/progress_bar.py to progress_bar.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook/argparse.py to argparse.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook/__init__.py to __init__.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook/attribute.py to attribute.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/cookbook/doc_optparse.py to doc_optparse.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/wiggle.py to wiggle.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bitset_builders.py to bitset_builders.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/bitset_utils.py to bitset_utils.cpython-39.pyc byte-compiling /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx/filter.py to filter.cpython-39.pyc running install_egg_info running egg_info creating lib/bx_python.egg-info writing lib/bx_python.egg-info/PKG-INFO writing dependency_links to lib/bx_python.egg-info/dependency_links.txt writing requirements to lib/bx_python.egg-info/requires.txt writing top-level names to lib/bx_python.egg-info/top_level.txt writing manifest file 'lib/bx_python.egg-info/SOURCES.txt' reading manifest file 'lib/bx_python.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'distribute_setup.py' writing manifest file 'lib/bx_python.egg-info/SOURCES.txt' Copying lib/bx_python.egg-info to /build/python-bx-0.8.9/debian/python3-bx/usr/lib/python3.9/dist-packages/bx_python-0.8.9.egg-info Skipping SOURCES.txt running install_scripts creating /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_filter_max_wc.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/one_field_per_line.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/align_print_template.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_print_chroms.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/lav_to_maf.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_truncate.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/axt_to_fasta.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/find_in_sorted_file.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/int_seqs_to_char_strings.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/prefix_lines.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/line_select.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_col_counts.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_count_by_interval.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_bigwig_profile.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_thread_for_species.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_percent_identity.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_chunk.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_merge_overlapping.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_gap_frequency.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/axt_extract_ranges.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_col_counts_all.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_region_coverage_by_src.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_mask_cpg.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/lav_to_axt.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_tile.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_extract_chrom_ranges.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/pretty_table.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/wiggle_to_simple.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_gc_content.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/gene_fourfold_sites.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_rand_intersect.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_limit_to_species.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_subtract_basewise.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_percent_columns_matching.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_to_axt.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_intersect.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/axt_to_lav.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_extend_to.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bnMapper.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/table_add_column.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_build_index.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_word_frequency.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_to_fasta.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_shuffle_columns.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_coverage.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/qv_to_bqv.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/wiggle_to_array_tree.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_count.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/aggregate_scores_in_intervals.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/wiggle_to_binned_array.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_complement.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_mapping_word_frequency.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/mask_quality.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/nib_chrom_intervals_to_fasta.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/nib_length.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_intersect_basewise.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_to_int_seqs.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/mMK_bitset.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_to_concat_fasta.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_covered_ranges.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_print_scores.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_extract_ranges_indexed.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_covered_regions.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/interval_join.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_mean_length_ungapped_piece.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/table_filter.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_filter.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/ucsc_gene_table_to_intervals.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_split_by_src.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_extract_ranges.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/tfloc_summary.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/axt_to_maf.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/out_to_chain.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_count_overlapping.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/div_snp_table_chr.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/nib_intervals_to_fasta.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_interval_alignibility.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_div_sites.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_randomize.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_species_in_all_files.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_drop_overlapping.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/interval_count_intersections.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/lzop_build_offset_table.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_tile_2bit.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_coverage_by_interval.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_build_windows.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_chop.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_select.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/wiggle_to_chr_binned_array.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/bed_diff_basewise_summary.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/random_lines.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_translate_chars.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/get_scores_in_intervals.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin copying build/scripts-3.9/maf_tile_2.py -> /build/python-bx-0.8.9/debian/python3-bx/usr/bin changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_filter_max_wc.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/one_field_per_line.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/align_print_template.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_print_chroms.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/lav_to_maf.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_truncate.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/axt_to_fasta.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/find_in_sorted_file.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/int_seqs_to_char_strings.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/prefix_lines.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/line_select.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_col_counts.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_count_by_interval.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_bigwig_profile.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_thread_for_species.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_percent_identity.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_chunk.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_merge_overlapping.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_gap_frequency.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/axt_extract_ranges.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_col_counts_all.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_region_coverage_by_src.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_mask_cpg.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/lav_to_axt.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_tile.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_extract_chrom_ranges.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/pretty_table.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/wiggle_to_simple.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_gc_content.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/gene_fourfold_sites.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_rand_intersect.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_limit_to_species.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_subtract_basewise.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_percent_columns_matching.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_to_axt.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_intersect.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/axt_to_lav.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_extend_to.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/bnMapper.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/table_add_column.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_build_index.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_word_frequency.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_to_fasta.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_shuffle_columns.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_coverage.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/qv_to_bqv.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/wiggle_to_array_tree.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_count.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/aggregate_scores_in_intervals.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/wiggle_to_binned_array.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_complement.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_mapping_word_frequency.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/mask_quality.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/nib_chrom_intervals_to_fasta.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/nib_length.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_intersect_basewise.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_to_int_seqs.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/mMK_bitset.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_to_concat_fasta.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_covered_ranges.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_print_scores.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_extract_ranges_indexed.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_covered_regions.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/interval_join.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_mean_length_ungapped_piece.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/table_filter.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_filter.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/ucsc_gene_table_to_intervals.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_split_by_src.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_extract_ranges.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/tfloc_summary.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/axt_to_maf.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/out_to_chain.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_count_overlapping.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/div_snp_table_chr.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/nib_intervals_to_fasta.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_interval_alignibility.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_div_sites.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_randomize.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_species_in_all_files.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_drop_overlapping.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/interval_count_intersections.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/lzop_build_offset_table.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_tile_2bit.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_coverage_by_interval.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_build_windows.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_chop.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_select.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/wiggle_to_chr_binned_array.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/bed_diff_basewise_summary.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/random_lines.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_translate_chars.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/get_scores_in_intervals.py to 755 changing mode of /build/python-bx-0.8.9/debian/python3-bx/usr/bin/maf_tile_2.py to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package python3-bx: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-bx: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-bx: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-bx: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-bx' in '../python3-bx_0.8.9-1_i386.deb'. dpkg-deb: building package 'python3-bx-dbgsym' in '../python3-bx-dbgsym_0.8.9-1_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../python-bx_0.8.9-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/34213 and its subdirectories I: Current time: Sun Jul 3 12:35:19 -12 2022 I: pbuilder-time-stamp: 1656894919 Mon May 31 18:12:20 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos2-i386.debian.net. Mon May 31 18:12:20 UTC 2021 I: Preparing to do remote build '2' on ionos2-i386.debian.net. Mon May 31 18:22:49 UTC 2021 I: Deleting $TMPDIR on ionos2-i386.debian.net. Mon May 31 18:22:50 UTC 2021 I: python-bx_0.8.9-1_i386.changes: Format: 1.8 Date: Wed, 24 Feb 2021 21:46:03 +0100 Source: python-bx Binary: python3-bx python3-bx-dbgsym Architecture: i386 Version: 0.8.9-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Steffen Moeller Description: python3-bx - library to manage genomic data and its alignment Changes: python-bx (0.8.9-1) unstable; urgency=medium . * New upstream version * Fixed d/watch to find the latest version. * Fixed Python 2.4 shebang lines * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * No tab in license text (routine-update) * Set upstream metadata fields: Bug-Submit. Checksums-Sha1: a509bd373b28d9967e31b9611c0266ae5726bc3b 6098 python-bx_0.8.9-1_i386.buildinfo 64685de893a9e6cde2371008afd4843a81dcbb75 2511040 python3-bx-dbgsym_0.8.9-1_i386.deb 8bf982b0ba755fb678a9b4bf950f63f6e0860344 1935980 python3-bx_0.8.9-1_i386.deb Checksums-Sha256: 83bddf3c11a38e149102edb84b6002c8b0f6e9d4067f5cb32e77e6af1ea88e24 6098 python-bx_0.8.9-1_i386.buildinfo 2e25964bf8e491b047b86008e5b3ae0df87503f239cf4cf4c744c9e90407a5f1 2511040 python3-bx-dbgsym_0.8.9-1_i386.deb 0e5b36a1e6d2a73c310264b8ade12535c8213be2cae828d4e8e93bebc67f5b4e 1935980 python3-bx_0.8.9-1_i386.deb Files: da789322f280b4f470055498c567a87f 6098 python optional python-bx_0.8.9-1_i386.buildinfo e57081b6d0402b2c761439c7cdbf8b9f 2511040 debug optional python3-bx-dbgsym_0.8.9-1_i386.deb bad58fc3457a7b9b578fa481bd432fd8 1935980 python optional python3-bx_0.8.9-1_i386.deb Mon May 31 18:22:54 UTC 2021 I: diffoscope 172 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.afHx06P971/python-bx_0.8.9-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.afHx06P971/python-bx_0.8.9-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.afHx06P971/python-bx_0.8.9-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.afHx06P971/b1/python-bx_0.8.9-1_i386.changes /srv/reproducible-results/rbuild-debian/tmp.afHx06P971/b2/python-bx_0.8.9-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.426s) 0.426s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.069s) 0.069s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Mon May 31 18:22:56 UTC 2021 I: diffoscope 172 found no differences in the changes files, and a .buildinfo file also exists. Mon May 31 18:22:56 UTC 2021 I: python-bx from bullseye built successfully and reproducibly on i386. Mon May 31 18:22:57 UTC 2021 I: Submitting .buildinfo files to external archives: Mon May 31 18:22:57 UTC 2021 I: Submitting 8.0K b1/python-bx_0.8.9-1_i386.buildinfo.asc Mon May 31 18:22:58 UTC 2021 I: Submitting 8.0K b2/python-bx_0.8.9-1_i386.buildinfo.asc Mon May 31 18:23:00 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon May 31 18:23:00 UTC 2021 I: Done submitting .buildinfo files. Mon May 31 18:23:00 UTC 2021 I: Removing signed python-bx_0.8.9-1_i386.buildinfo.asc files: removed './b1/python-bx_0.8.9-1_i386.buildinfo.asc' removed './b2/python-bx_0.8.9-1_i386.buildinfo.asc'