Thu Jun 24 14:32:26 UTC 2021 I: starting to build metabat/bullseye/i386 on jenkins on '2021-06-24 14:32' Thu Jun 24 14:32:26 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_3/11049/console.log Thu Jun 24 14:32:26 UTC 2021 I: Downloading source for bullseye/metabat=2.15-3 --2021-06-24 14:32:26-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/metabat/metabat_2.15-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2192 (2.1K) Saving to: ‘metabat_2.15-3.dsc’ 0K .. 100% 155M=0s 2021-06-24 14:32:26 (155 MB/s) - ‘metabat_2.15-3.dsc’ saved [2192/2192] Thu Jun 24 14:32:26 UTC 2021 I: metabat_2.15-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: metabat Binary: metabat Architecture: any-amd64 any-i386 Version: 2.15-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://bitbucket.org/berkeleylab/metabat/wiki/Home Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/metabat Vcs-Git: https://salsa.debian.org/med-team/metabat.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, libboost-graph-dev, libboost-system-dev, libboost-filesystem-dev, libboost-serialization-dev, libboost-program-options-dev, libboost-iostreams-dev, zlib1g-dev, libhts-dev, pkg-config, python3 Package-List: metabat deb science optional arch=any-amd64,any-i386,x32 Checksums-Sha1: d486fcd81dd4c7dc135a31825feac05ed83e44ae 195575 metabat_2.15.orig.tar.gz b96a1495770f5fa0829b3136c2a43bf22b94b17d 9692 metabat_2.15-3.debian.tar.xz Checksums-Sha256: 550487b66ec9b3bc53edf513d00c9deda594a584f53802165f037bde29b4d34e 195575 metabat_2.15.orig.tar.gz 4ed7df8e17b5fe76778b9e0e9915bf22911fd079ba782a37084784a7ceec4de5 9692 metabat_2.15-3.debian.tar.xz Files: 61a8f6a1334e5367c428505edeb4305a 195575 metabat_2.15.orig.tar.gz 980c150e3f8ef113c79511ab771423c3 9692 metabat_2.15-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/L8PYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEDGA//d2GqHROerw+KrB2UaxGISD5OUUL+kpAs LBibmePnh/vzS3jYTqVCSVNU30SQydgAXFwIIGU0AQBcAySfco4a+hxBUherzFqi o0UNFQNtV96jP03HUeSa0OJeJ4LpRfdlYHFjRfeVAy6H+BGrNnd3NQL89G6nVrGl c00FPMpNvZQkgCJ7Pvl0cQrNBkzU1mMW1unzHp23RHMDsyQusiCcJ3mWyYAhgHeg /7nZRyxsG04FfQCc+UToZC8Ta62TR9mnqVBfFSUuRXmgsIp5xT7ubeX81CTCZSXj 9fND0csa+hXqqOs7V+7FV7MS8DDEO8qQxblPqQ4KIn/MBTB7NZqZF8HE2X7UPRPX eLdKkkKFN/3FqScJp/EVYqD4KlFNMK5TkuuA+GLphS1Ctu8bOB/IeahV3o6TVPXV MIpKLfbMEgBHCQ0jg1LBWbDMna3znMbk3D21glegIdLBbPid16QQil3ldjp6y9ah fj3JNXLLbYjzb8MpF7brKmJrWIsVTIi/h4CdAcAPtqoxL3qJiN0ZR3K/Dy+4Vx/j sUI1ZQZ4e1r+t5Sg0wuXwKSkq0LQpkCuwzVydeayxZej2LBwQqoW3pBlMnA036z1 c+7h4ikj1OrJAEGJSrnVkgQJfuJDXBJ5C5zmeDJVFwlfFNP4pJ+DFiVM+EG0vg1s cORm9Dm/orQ= =MEq+ -----END PGP SIGNATURE----- Thu Jun 24 14:32:26 UTC 2021 I: Checking whether the package is not for us Thu Jun 24 14:32:26 UTC 2021 I: Starting 1st build on remote node ionos2-i386.debian.net. Thu Jun 24 14:32:26 UTC 2021 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Thu Jun 24 14:38:33 UTC 2021 I: Deleting $TMPDIR on ionos2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jun 24 02:32:29 -12 2021 I: pbuilder-time-stamp: 1624545149 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [metabat_2.15-3.dsc] I: copying [./metabat_2.15.orig.tar.gz] I: copying [./metabat_2.15-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.UuqWatTz/trustedkeys.kbx': General error gpgv: Signature made Sat Dec 5 08:43:34 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./metabat_2.15-3.dsc dpkg-source: info: extracting metabat in metabat-2.15 dpkg-source: info: unpacking metabat_2.15.orig.tar.gz dpkg-source: info: unpacking metabat_2.15-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/25189/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=10' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='b2e7cf74e8784cceaf2e4157a7d71d67' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='25189' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.tU7Mqva59g/pbuilderrc_Dhvr --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.tU7Mqva59g/b1 --logfile b1/build.log metabat_2.15-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos2-i386 4.19.0-17-686-pae #1 SMP Debian 4.19.194-1 (2021-06-10) i686 GNU/Linux I: ls -l /bin total 5780 -rwxr-xr-x 1 root root 1367848 Jun 21 14:25 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 7 02:38 more -rwsr-xr-x 1 root root 50720 Feb 7 02:38 mount -rwxr-xr-x 1 root root 13856 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:25 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jun 23 21:25 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Feb 7 02:38 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 21:55 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 7 02:38 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/25189/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libboost-graph-dev, libboost-system-dev, libboost-filesystem-dev, libboost-serialization-dev, libboost-program-options-dev, libboost-iostreams-dev, zlib1g-dev, libhts-dev, pkg-config, python3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libboost-graph-dev; however: Package libboost-graph-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-serialization-dev; however: Package libboost-serialization-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libboost-filesystem-dev{a} libboost-filesystem1.74-dev{a} libboost-filesystem1.74.0{a} libboost-graph-dev{a} libboost-graph1.74-dev{a} libboost-graph1.74.0{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-serialization-dev{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-system-dev{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost-test1.74-dev{a} libboost-test1.74.0{a} libboost1.74-dev{a} libbrotli1{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libglib2.0-0{a} libhts-dev{a} libhts3{a} libicu-dev{a} libicu67{a} libjsoncpp24{a} libldap-2.4-2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps8{a} libpsl5{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} media-types{a} pkg-config{a} po-debconf{a} procps{a} python3{a} python3-minimal{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix shared-mime-info wget xdg-user-dirs 0 packages upgraded, 95 newly installed, 0 to remove and 0 not upgraded. Need to get 69.4 MB of archives. After unpacking 384 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 libpython3.9-minimal i386 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2 [98.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 python3.9-minimal i386 3.9.2-1 [1956 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 python3-minimal i386 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libmpdec3 i386 2.5.1-1 [91.9 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 libreadline8 i386 8.1-1 [173 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 libpython3.9-stdlib i386 3.9.2-1 [1703 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 python3.9 i386 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 libpython3-stdlib i386 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 python3 i386 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 libncurses6 i386 6.2+20201114-2 [110 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 libprocps8 i386 2:3.3.17-5 [64.2 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 procps i386 2:3.3.17-5 [501 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 cmake-data all 3.18.4-2 [1725 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-6 [8776 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 libarchive13 i386 3.4.3-2+b1 [384 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 libsasl2-modules-db i386 2.1.27+dfsg-2.1 [70.0 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 libsasl2-2 i386 2.1.27+dfsg-2.1 [110 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libldap-2.4-2 i386 2.4.57+dfsg-3 [244 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 libnghttp2-14 i386 1.43.0-1 [85.7 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 libpsl5 i386 0.21.0-1.2 [57.9 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 libssh2-1 i386 1.9.0-2 [164 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 libcurl4 i386 7.74.0-1.2 [372 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 libjsoncpp24 i386 1.9.4-4 [86.1 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 librhash0 i386 1.4.1-2 [144 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 libuv1 i386 1.40.0-1 [139 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 cmake i386 3.18.4-2 [7029 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 54 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 57 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 58 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 59 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 60 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 61 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 62 http://deb.debian.org/debian bullseye/main i386 icu-devtools i386 67.1-6 [209 kB] Get: 63 http://deb.debian.org/debian bullseye/main i386 libboost1.74-dev i386 1.74.0-9 [9534 kB] Get: 64 http://deb.debian.org/debian bullseye/main i386 libboost-filesystem1.74.0 i386 1.74.0-9 [288 kB] Get: 65 http://deb.debian.org/debian bullseye/main i386 libboost-system1.74.0 i386 1.74.0-9 [241 kB] Get: 66 http://deb.debian.org/debian bullseye/main i386 libboost-system1.74-dev i386 1.74.0-9 [243 kB] Get: 67 http://deb.debian.org/debian bullseye/main i386 libboost-filesystem1.74-dev i386 1.74.0-9 [311 kB] Get: 68 http://deb.debian.org/debian bullseye/main i386 libboost-filesystem-dev i386 1.74.0.3 [4368 B] Get: 69 http://deb.debian.org/debian bullseye/main i386 libboost-regex1.74.0 i386 1.74.0-9 [542 kB] Get: 70 http://deb.debian.org/debian bullseye/main i386 libboost-graph1.74.0 i386 1.74.0-9 [332 kB] Get: 71 http://deb.debian.org/debian bullseye/main i386 libicu-dev i386 67.1-6 [9799 kB] Get: 72 http://deb.debian.org/debian bullseye/main i386 libboost-regex1.74-dev i386 1.74.0-9 [618 kB] Get: 73 http://deb.debian.org/debian bullseye/main i386 libboost-serialization1.74.0 i386 1.74.0-9 [346 kB] Get: 74 http://deb.debian.org/debian bullseye/main i386 libboost-serialization1.74-dev i386 1.74.0-9 [390 kB] Get: 75 http://deb.debian.org/debian bullseye/main i386 libboost-test1.74.0 i386 1.74.0-9 [481 kB] Get: 76 http://deb.debian.org/debian bullseye/main i386 libboost-test1.74-dev i386 1.74.0-9 [557 kB] Get: 77 http://deb.debian.org/debian bullseye/main i386 libboost-graph1.74-dev i386 1.74.0-9 [1661 kB] Get: 78 http://deb.debian.org/debian bullseye/main i386 libboost-graph-dev i386 1.74.0.3 [4436 B] Get: 79 http://deb.debian.org/debian bullseye/main i386 libboost-iostreams1.74-dev i386 1.74.0-9 [275 kB] Get: 80 http://deb.debian.org/debian bullseye/main i386 libboost-iostreams-dev i386 1.74.0.3 [4320 B] Get: 81 http://deb.debian.org/debian bullseye/main i386 libboost-program-options1.74.0 i386 1.74.0-9 [365 kB] Get: 82 http://deb.debian.org/debian bullseye/main i386 libboost-program-options1.74-dev i386 1.74.0-9 [397 kB] Get: 83 http://deb.debian.org/debian bullseye/main i386 libboost-program-options-dev i386 1.74.0.3 [4344 B] Get: 84 http://deb.debian.org/debian bullseye/main i386 libboost-serialization-dev i386 1.74.0.3 [4560 B] Get: 85 http://deb.debian.org/debian bullseye/main i386 libboost-system-dev i386 1.74.0.3 [4472 B] Get: 86 http://deb.debian.org/debian bullseye/main i386 libcurl3-gnutls i386 7.74.0-1.2 [367 kB] Get: 87 http://deb.debian.org/debian bullseye/main i386 libcurl4-gnutls-dev i386 7.74.0-1.2 [471 kB] Get: 88 http://deb.debian.org/debian bullseye/main i386 libdeflate0 i386 1.7-1 [48.4 kB] Get: 89 http://deb.debian.org/debian bullseye/main i386 libdeflate-dev i386 1.7-1 [44.4 kB] Get: 90 http://deb.debian.org/debian bullseye/main i386 libglib2.0-0 i386 2.66.8-1 [1437 kB] Get: 91 http://deb.debian.org/debian bullseye/main i386 libhts3 i386 1.11-4 [408 kB] Get: 92 http://deb.debian.org/debian bullseye/main i386 liblzma-dev i386 5.2.5-2 [240 kB] Get: 93 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] Get: 94 http://deb.debian.org/debian bullseye/main i386 libhts-dev i386 1.11-4 [3817 kB] Get: 95 http://deb.debian.org/debian bullseye/main i386 pkg-config i386 0.29.2-1 [66.3 kB] Fetched 69.4 MB in 8s (8301 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-7_i386.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../1-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_i386.deb ... 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Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20542 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_i386.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:i386. 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(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20963 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_i386.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../01-libncurses6_6.2+20201114-2_i386.deb ... Unpacking libncurses6:i386 (6.2+20201114-2) ... Selecting previously unselected package libprocps8:i386. Preparing to unpack .../02-libprocps8_2%3a3.3.17-5_i386.deb ... 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Unpacking libsasl2-2:i386 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:i386. Preparing to unpack .../22-libldap-2.4-2_2.4.57+dfsg-3_i386.deb ... Unpacking libldap-2.4-2:i386 (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../23-libnghttp2-14_1.43.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.43.0-1) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../24-libpsl5_0.21.0-1.2_i386.deb ... Unpacking libpsl5:i386 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../25-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:i386. Preparing to unpack .../26-libssh2-1_1.9.0-2_i386.deb ... Unpacking libssh2-1:i386 (1.9.0-2) ... Selecting previously unselected package libcurl4:i386. Preparing to unpack .../27-libcurl4_7.74.0-1.2_i386.deb ... Unpacking libcurl4:i386 (7.74.0-1.2) ... Selecting previously unselected package libjsoncpp24:i386. Preparing to unpack .../28-libjsoncpp24_1.9.4-4_i386.deb ... Unpacking libjsoncpp24:i386 (1.9.4-4) ... Selecting previously unselected package librhash0:i386. Preparing to unpack .../29-librhash0_1.4.1-2_i386.deb ... Unpacking librhash0:i386 (1.4.1-2) ... Selecting previously unselected package libuv1:i386. Preparing to unpack .../30-libuv1_1.40.0-1_i386.deb ... Unpacking libuv1:i386 (1.40.0-1) ... Selecting previously unselected package cmake. Preparing to unpack .../31-cmake_3.18.4-2_i386.deb ... Unpacking cmake (3.18.4-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../32-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../33-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... 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Unpacking libelf1:i386 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../40-dwz_0.13+20210201-1_i386.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package gettext. Preparing to unpack .../41-gettext_0.21-4_i386.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../42-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../43-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../44-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../45-icu-devtools_67.1-6_i386.deb ... Unpacking icu-devtools (67.1-6) ... Selecting previously unselected package libboost1.74-dev:i386. 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Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/metabat-2.15/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package metabat dpkg-buildpackage: info: source version 2.15-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Installing None MetaBAT into /usr -- Found ZLIB: /usr/lib/i386-linux-gnu/libz.so (found version "1.2.11") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for module 'htslib' -- Found htslib, version 1.11-4 CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) src/CMakeLists.txt:4 (find_package) CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) src/CMakeLists.txt:4 (find_package) CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) src/CMakeLists.txt:4 (find_package) CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) src/CMakeLists.txt:4 (find_package) CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) src/CMakeLists.txt:4 (find_package) CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) src/CMakeLists.txt:4 (find_package) CMake Warning at /usr/share/cmake-3.18/Modules/FindBoost.cmake:1187 (message): New Boost version may have incorrect or missing dependencies and imported targets Call Stack (most recent call first): /usr/share/cmake-3.18/Modules/FindBoost.cmake:1311 (_Boost_COMPONENT_DEPENDENCIES) /usr/share/cmake-3.18/Modules/FindBoost.cmake:1919 (_Boost_MISSING_DEPENDENCIES) src/CMakeLists.txt:4 (find_package) -- Found Boost: /usr/include (found suitable version "1.74.0", minimum required is "1.55.0") found components: program_options filesystem system graph serialization iostreams regex -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") Using OpenMP Boost cmake dir: Boost include: /usr/include Boost libraries:/usr/lib/i386-linux-gnu/libboost_program_options.a/usr/lib/i386-linux-gnu/libboost_filesystem.a/usr/lib/i386-linux-gnu/libboost_system.a/usr/lib/i386-linux-gnu/libboost_graph.a/usr/lib/i386-linux-gnu/libboost_serialization.a/usr/lib/i386-linux-gnu/libboost_iostreams.a/usr/lib/i386-linux-gnu/libboost_regex.a Boost lib ver:1_74 Boost lib dir:/usr/lib/i386-linux-gnu -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/metabat-2.15/obj-i686-linux-gnu dh_auto_build cd obj-i686-linux-gnu && make -j10 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/metabat-2.15/obj-i686-linux-gnu' /usr/bin/cmake -S/build/metabat-2.15 -B/build/metabat-2.15/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 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Dependee "/build/metabat-2.15/obj-i686-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/metabat-2.15/obj-i686-linux-gnu/src/CMakeFiles/contigOverlaps.dir/depend.internal". Dependee "/build/metabat-2.15/obj-i686-linux-gnu/src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/DependInfo.cmake" is newer than depender "/build/metabat-2.15/obj-i686-linux-gnu/src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/depend.internal". Dependee "/build/metabat-2.15/obj-i686-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/metabat-2.15/obj-i686-linux-gnu/src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/depend.internal". Dependee "/build/metabat-2.15/obj-i686-linux-gnu/src/CMakeFiles/metabat2.dir/DependInfo.cmake" is newer than depender "/build/metabat-2.15/obj-i686-linux-gnu/src/CMakeFiles/metabat2.dir/depend.internal". Dependee "/build/metabat-2.15/obj-i686-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/metabat-2.15/obj-i686-linux-gnu/src/CMakeFiles/metabat2.dir/depend.internal". Dependee "/build/metabat-2.15/obj-i686-linux-gnu/src/CMakeFiles/metabat1.dir/DependInfo.cmake" is newer than depender "/build/metabat-2.15/obj-i686-linux-gnu/src/CMakeFiles/metabat1.dir/depend.internal". Dependee "/build/metabat-2.15/obj-i686-linux-gnu/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/metabat-2.15/obj-i686-linux-gnu/src/CMakeFiles/metabat1.dir/depend.internal". Scanning dependencies of target contigOverlaps make[3]: Leaving directory '/build/metabat-2.15/obj-i686-linux-gnu' make -f src/CMakeFiles/contigOverlaps.dir/build.make src/CMakeFiles/contigOverlaps.dir/build make[3]: Entering directory '/build/metabat-2.15/obj-i686-linux-gnu' Scanning dependencies of target metabat1 make[3]: Leaving directory '/build/metabat-2.15/obj-i686-linux-gnu' make -f src/CMakeFiles/metabat1.dir/build.make src/CMakeFiles/metabat1.dir/build Scanning dependencies of target metabat2 make[3]: Entering directory '/build/metabat-2.15/obj-i686-linux-gnu' make[3]: Leaving directory '/build/metabat-2.15/obj-i686-linux-gnu' make -f src/CMakeFiles/metabat2.dir/build.make src/CMakeFiles/metabat2.dir/build make[3]: Entering directory '/build/metabat-2.15/obj-i686-linux-gnu' Scanning dependencies of target jgi_summarize_bam_contig_depths make[3]: Leaving directory '/build/metabat-2.15/obj-i686-linux-gnu' make -f src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/build.make src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/build [ 12%] Building CXX object src/CMakeFiles/metabat1.dir/metabat1.cpp.o [ 25%] Building CXX object src/CMakeFiles/contigOverlaps.dir/contigOverlaps.cpp.o make[3]: Entering directory '/build/metabat-2.15/obj-i686-linux-gnu' cd /build/metabat-2.15/obj-i686-linux-gnu/src && /usr/bin/c++ -D_XOPEN_SOURCE=700 -I/build/metabat-2.15/obj-i686-linux-gnu -I/build/metabat-2.15 -g -O2 -fdebug-prefix-map=/build/metabat-2.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=c++11 -o CMakeFiles/metabat1.dir/metabat1.cpp.o -c /build/metabat-2.15/src/metabat1.cpp cd /build/metabat-2.15/obj-i686-linux-gnu/src && /usr/bin/c++ -D_XOPEN_SOURCE=700 -I/build/metabat-2.15/obj-i686-linux-gnu -I/build/metabat-2.15 -g -O2 -fdebug-prefix-map=/build/metabat-2.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=c++11 -o CMakeFiles/contigOverlaps.dir/contigOverlaps.cpp.o -c /build/metabat-2.15/src/contigOverlaps.cpp [ 37%] Building CXX object src/CMakeFiles/metabat2.dir/metabat2.cpp.o cd /build/metabat-2.15/obj-i686-linux-gnu/src && /usr/bin/c++ -D_XOPEN_SOURCE=700 -I/build/metabat-2.15/obj-i686-linux-gnu -I/build/metabat-2.15 -g -O2 -fdebug-prefix-map=/build/metabat-2.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=c++11 -o CMakeFiles/metabat2.dir/metabat2.cpp.o -c /build/metabat-2.15/src/metabat2.cpp [ 50%] Building CXX object src/CMakeFiles/jgi_summarize_bam_contig_depths.dir/jgi_summarize_bam_contig_depths.cpp.o cd /build/metabat-2.15/obj-i686-linux-gnu/src && /usr/bin/c++ -D_XOPEN_SOURCE=700 -I/build/metabat-2.15/obj-i686-linux-gnu -I/build/metabat-2.15 -g -O2 -fdebug-prefix-map=/build/metabat-2.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -std=c++11 -o CMakeFiles/jgi_summarize_bam_contig_depths.dir/jgi_summarize_bam_contig_depths.cpp.o -c /build/metabat-2.15/src/jgi_summarize_bam_contig_depths.cpp In file included from /build/metabat-2.15/src/jgi_summarize_bam_contig_depths.h:35, from /build/metabat-2.15/src/jgi_summarize_bam_contig_depths.cpp:5: /build/metabat-2.15/src/BamUtils.h: In member function ‘bam1_t* BamCache::getBam(const bam1_t*)’: /build/metabat-2.15/src/BamUtils.h:98:13: warning: ignoring return value of ‘bam1_t* bam_copy1(bam1_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 98 | bam_copy1(bam, copy); | ~~~~~~~~~^~~~~~~~~~~ In file included from /build/metabat-2.15/src/jgi_summarize_bam_contig_depths.h:35, from /build/metabat-2.15/src/jgi_summarize_bam_contig_depths.cpp:5: /build/metabat-2.15/src/BamUtils.h: In member function ‘NameBamMap::iterator NameBamMap::insert(std::string, const bam1_t*, bool)’: /build/metabat-2.15/src/BamUtils.h:271:14: warning: ignoring return value of ‘bam1_t* bam_copy1(bam1_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 271 | bam_copy1(existing->second, bam); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/metabat-2.15/src/jgi_summarize_bam_contig_depths.h:35, from /build/metabat-2.15/src/jgi_summarize_bam_contig_depths.cpp:5: /build/metabat-2.15/src/BamUtils.h: In static member function ‘static int BamUtils::_findPairInFile(const bam1_t*, void*)’: /build/metabat-2.15/src/BamUtils.h:582:13: warning: ignoring return value of ‘bam1_t* bam_copy1(bam1_t*, const bam1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 582 | bam_copy1(data->mate, orphan); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 62%] Linking CXX executable contigOverlaps cd /build/metabat-2.15/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/contigOverlaps.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/metabat-2.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/contigOverlaps.dir/contigOverlaps.cpp.o -o contigOverlaps -lhts /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libboost_program_options.a /usr/lib/i386-linux-gnu/libboost_filesystem.a /usr/lib/i386-linux-gnu/libboost_system.a /usr/lib/i386-linux-gnu/libboost_graph.a /usr/lib/i386-linux-gnu/libboost_serialization.a /usr/lib/i386-linux-gnu/libboost_iostreams.a /usr/lib/i386-linux-gnu/libboost_regex.a make[3]: Leaving directory '/build/metabat-2.15/obj-i686-linux-gnu' [ 62%] Built target contigOverlaps [ 75%] Linking CXX executable jgi_summarize_bam_contig_depths cd /build/metabat-2.15/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/jgi_summarize_bam_contig_depths.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/metabat-2.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/jgi_summarize_bam_contig_depths.dir/jgi_summarize_bam_contig_depths.cpp.o -o jgi_summarize_bam_contig_depths -lhts /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libboost_program_options.a /usr/lib/i386-linux-gnu/libboost_filesystem.a /usr/lib/i386-linux-gnu/libboost_system.a /usr/lib/i386-linux-gnu/libboost_graph.a /usr/lib/i386-linux-gnu/libboost_serialization.a /usr/lib/i386-linux-gnu/libboost_iostreams.a /usr/lib/i386-linux-gnu/libboost_regex.a make[3]: Leaving directory '/build/metabat-2.15/obj-i686-linux-gnu' [ 75%] Built target jgi_summarize_bam_contig_depths [ 87%] Linking CXX executable metabat2 cd /build/metabat-2.15/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/metabat2.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/metabat-2.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/metabat2.dir/metabat2.cpp.o -o metabat2 -lhts /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libboost_program_options.a /usr/lib/i386-linux-gnu/libboost_filesystem.a /usr/lib/i386-linux-gnu/libboost_system.a /usr/lib/i386-linux-gnu/libboost_graph.a /usr/lib/i386-linux-gnu/libboost_serialization.a /usr/lib/i386-linux-gnu/libboost_iostreams.a /usr/lib/i386-linux-gnu/libboost_regex.a make[3]: Leaving directory '/build/metabat-2.15/obj-i686-linux-gnu' [ 87%] Built target metabat2 [100%] Linking CXX executable metabat1 cd /build/metabat-2.15/obj-i686-linux-gnu/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/metabat1.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/metabat-2.15=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fopenmp -Wl,-z,relro -Wl,-z,now CMakeFiles/metabat1.dir/metabat1.cpp.o -o metabat1 -lhts /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libboost_program_options.a /usr/lib/i386-linux-gnu/libboost_filesystem.a /usr/lib/i386-linux-gnu/libboost_system.a /usr/lib/i386-linux-gnu/libboost_graph.a /usr/lib/i386-linux-gnu/libboost_serialization.a /usr/lib/i386-linux-gnu/libboost_iostreams.a /usr/lib/i386-linux-gnu/libboost_regex.a make[3]: Leaving directory '/build/metabat-2.15/obj-i686-linux-gnu' [100%] Built target metabat1 make[2]: Leaving directory '/build/metabat-2.15/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/metabat-2.15/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/metabat-2.15/obj-i686-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/metabat-2.15' cp -a test/contigs_depth.txt obj-i686-linux-gnu dh_auto_test cd obj-i686-linux-gnu && make -j10 test ARGS\+=-j10 make[2]: Entering directory '/build/metabat-2.15/obj-i686-linux-gnu' Running tests... /usr/bin/ctest --force-new-ctest-process -j10 Test project /build/metabat-2.15/obj-i686-linux-gnu Start 1: test_depths Start 2: test_metabat1 Start 3: test_metabat2 1/3 Test #1: test_depths ...................... Passed 0.15 sec 2/3 Test #2: test_metabat1 .................... Passed 1.24 sec 3/3 Test #3: test_metabat2 .................... Passed 1.47 sec 100% tests passed, 0 tests failed out of 3 Total Test time (real) = 1.52 sec make[2]: Leaving directory '/build/metabat-2.15/obj-i686-linux-gnu' make[1]: Leaving directory '/build/metabat-2.15' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-i686-linux-gnu && make -j10 install DESTDIR=/build/metabat-2.15/debian/metabat AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/metabat-2.15/obj-i686-linux-gnu' /usr/bin/cmake -S/build/metabat-2.15 -B/build/metabat-2.15/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/metabat-2.15/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/metabat-2.15/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/metabat-2.15/debian/metabat/usr/bin/runMetaBat.sh -- Installing: /build/metabat-2.15/debian/metabat/usr/bin/merge_depths.pl -- Installing: /build/metabat-2.15/debian/metabat/usr/bin/aggregateBinDepths.pl -- Installing: /build/metabat-2.15/debian/metabat/usr/bin/aggregateContigOverlapsByBin.pl CMake Error: failed to create symbolic link '/usr/bin/metabat': permission denied -- Installing: /build/metabat-2.15/debian/metabat/usr/bin/metabat1 -- Installing: /build/metabat-2.15/debian/metabat/usr/bin/metabat2 -- Installing: /build/metabat-2.15/debian/metabat/usr/bin/jgi_summarize_bam_contig_depths -- Installing: /build/metabat-2.15/debian/metabat/usr/bin/contigOverlaps make[1]: Leaving directory '/build/metabat-2.15/obj-i686-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/metabat-2.15' dh_install for perlscript in `grep -l '#!/usr/bin/env \+perl' debian/*/usr/bin/*` ; do \ sed -i '1s+#!/usr/bin/env perl+#!/usr/bin/perl+' ${perlscript} ; \ done make[1]: Leaving directory '/build/metabat-2.15' dh_installdocs dh_installchangelogs dh_installexamples debian/rules override_dh_installman make[1]: Entering directory '/build/metabat-2.15' dh_installman --language=C make[1]: Leaving directory '/build/metabat-2.15' dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package metabat: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package metabat: substitution variable ${perl:Depends} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'metabat' in '../metabat_2.15-3_i386.deb'. dpkg-deb: building package 'metabat-dbgsym' in '../metabat-dbgsym_2.15-3_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../metabat_2.15-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/25189 and its subdirectories I: Current time: Thu Jun 24 02:38:33 -12 2021 I: pbuilder-time-stamp: 1624545513 Thu Jun 24 14:38:33 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Thu Jun 24 14:38:34 UTC 2021 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Thu Jun 24 14:39:35 UTC 2021 I: Deleting $TMPDIR on ionos16-i386.debian.net. Thu Jun 24 14:39:35 UTC 2021 I: metabat_2.15-3_i386.changes: Format: 1.8 Date: Sat, 05 Dec 2020 21:40:34 +0100 Source: metabat Binary: metabat metabat-dbgsym Architecture: i386 Version: 2.15-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: metabat - robust statistical framework for reconstructing genomes from meta Closes: 976528 Changes: metabat (2.15-3) unstable; urgency=medium . * Restrict Architecture: any-amd64 any-i386 x32 Closes: #976528 * Standards-Version: 4.5.1 (routine-update) Checksums-Sha1: 37e21527535930c5f31ef7bf0ee83bb209d46811 3827808 metabat-dbgsym_2.15-3_i386.deb 1d0aefe9fdcb4be46e0a3439f5c1910a3f3ddc68 7176 metabat_2.15-3_i386.buildinfo 56457b013d452a5012362d3fa1c63ac9ebfd2521 525300 metabat_2.15-3_i386.deb Checksums-Sha256: 48232735fbea5f6d768b8c97dddf3dabbcd13ab5ed4bacc4e919ada385912ad8 3827808 metabat-dbgsym_2.15-3_i386.deb ee63560c0ea21618d5609281a9dae190a5c93f086c803c4136e94708401ca14c 7176 metabat_2.15-3_i386.buildinfo 41d7263d5f13cad1ffb2262372a7d7af93dc99e06dcd84bf19f8d89d76684494 525300 metabat_2.15-3_i386.deb Files: 560ca3720fe769c09a6d2db0b805a08f 3827808 debug optional metabat-dbgsym_2.15-3_i386.deb 200d7f5a640021c6442efc918f1e48bf 7176 science optional metabat_2.15-3_i386.buildinfo edac8ebe66d36fa9e6935447ce02bda0 525300 science optional metabat_2.15-3_i386.deb Thu Jun 24 14:39:36 UTC 2021 I: diffoscope 172 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.tU7Mqva59g/metabat_2.15-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.tU7Mqva59g/metabat_2.15-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.tU7Mqva59g/metabat_2.15-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.tU7Mqva59g/b1/metabat_2.15-3_i386.changes /srv/reproducible-results/rbuild-debian/tmp.tU7Mqva59g/b2/metabat_2.15-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.316s) 0.316s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.059s) 0.058s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Thu Jun 24 14:39:39 UTC 2021 I: diffoscope 172 found no differences in the changes files, and a .buildinfo file also exists. Thu Jun 24 14:39:39 UTC 2021 I: metabat from bullseye built successfully and reproducibly on i386. Thu Jun 24 14:39:40 UTC 2021 I: Submitting .buildinfo files to external archives: Thu Jun 24 14:39:40 UTC 2021 I: Submitting 8.0K b1/metabat_2.15-3_i386.buildinfo.asc Thu Jun 24 14:39:40 UTC 2021 I: Submitting 8.0K b2/metabat_2.15-3_i386.buildinfo.asc Thu Jun 24 14:39:43 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jun 24 14:39:43 UTC 2021 I: Done submitting .buildinfo files. Thu Jun 24 14:39:43 UTC 2021 I: Removing signed metabat_2.15-3_i386.buildinfo.asc files: removed './b1/metabat_2.15-3_i386.buildinfo.asc' removed './b2/metabat_2.15-3_i386.buildinfo.asc'