Mon Jan 15 21:17:04 UTC 2024 I: starting to build macs/bullseye/i386 on jenkins on '2024-01-15 21:16' Mon Jan 15 21:17:04 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_7/14257/console.log Mon Jan 15 21:17:04 UTC 2024 I: Downloading source for bullseye/macs=2.2.7.1-3 --2024-01-15 21:17:04-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/macs/macs_2.2.7.1-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2102 (2.1K) [text/prs.lines.tag] Saving to: ‘macs_2.2.7.1-3.dsc’ 0K .. 100% 550K=0.004s 2024-01-15 21:17:05 (550 KB/s) - ‘macs_2.2.7.1-3.dsc’ saved [2102/2102] Mon Jan 15 21:17:05 UTC 2024 I: macs_2.2.7.1-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: macs Binary: macs Architecture: any Version: 2.2.7.1-3 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe , Andreas Tille Homepage: https://github.com/taoliu/MACS/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/macs Vcs-Git: https://salsa.debian.org/med-team/macs.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, cython3, help2man, procps Package-List: macs deb science optional arch=any Checksums-Sha1: 403dd5bb27a43d23b047e13f1ca7b46e7260bc76 134872405 macs_2.2.7.1.orig.tar.gz 68332c8e20356ed0356364a6d105054abe97f324 1267660 macs_2.2.7.1-3.debian.tar.xz Checksums-Sha256: 8ba25c367b84e237487b01be947239bee80e3ba123afc5e6034c374413b32913 134872405 macs_2.2.7.1.orig.tar.gz ec8667e7d3c85f3de72a87238266236470dd8c04a5631ad0f75f31545f5ee6f5 1267660 macs_2.2.7.1-3.debian.tar.xz Files: 3b669e6b847e5d2edd9b9ab4b58edae9 134872405 macs_2.2.7.1.orig.tar.gz c1b0b0f58baae3f2d4cf1221dc19e46f 1267660 macs_2.2.7.1-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl8PecARHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH0Lg//W9BV+5dYgxhbCdtHFfLHzUeiS4fiB7XG gcfgUkWAkJ1uJd10mCKguekUjY7n75vVGOrryQScD6UmUdP2YhPvG3KdsIUVbhwW joDbKeF0SfLT5LtyM1jNlXPsUxQ98ZOIs6xeKndDWp+SBLEzJO+Jdl3xOv2+oH00 O8W90gm4tNhTV0JWRqgFfz77AituqOSEyiTazkWD8fgsh36eDr9pq9Yo8V5ofoOq CFZ8VHubw+5T1k080CfEfQjvJDmWUZO1yTQV1l3pZyQgaY7kAzVZrrEEXfbHlMt4 WxPfNZGI+lD2JgYGBJTUP7UvEX5rJqyZ4lhY8zpSsjb2y402ZBiG9PV38LkLFa+c pxXF5GSPKOsCpcdy3iUX+QUeVLQf8YpQuqLfjBUuomsLSDEkVifPOweLVpJWn6v/ T+HewyFTHlCWiOA8wzVhSEX46d7x0qVdkI/uBg6CRzu+SaMX5924SRPUSRJhVzA+ UKYoIHdnLWsckfv3nytTGBNSixtleNLGwjE1Kzj3MUTPBd0lrmKjSJu4DqAGt09b JG+pwmw+cNK1QAoMk+GOzD7OH6KBsW7fT1BV9OlRYY944zw3pNpDBjYl6wuMvbBk rxn+Cf5M0q0w/XEw5tzNpoTvKKJuowEet2dh9XozrBu+X5AKF+Mr5Jxw0pNyK/ya Ud2TCytTlCA= =3Wug -----END PGP SIGNATURE----- Mon Jan 15 21:17:05 UTC 2024 I: Checking whether the package is not for us Mon Jan 15 21:17:05 UTC 2024 I: Starting 1st build on remote node ionos12-i386.debian.net. Mon Jan 15 21:17:05 UTC 2024 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Mon Jan 15 21:29:17 UTC 2024 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jan 15 09:18:04 -12 2024 I: pbuilder-time-stamp: 1705353484 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [macs_2.2.7.1-3.dsc] I: copying [./macs_2.2.7.1.orig.tar.gz] I: copying [./macs_2.2.7.1-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.jzmDI3Rk/trustedkeys.kbx': General error gpgv: Signature made Wed Jul 15 21:48:48 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./macs_2.2.7.1-3.dsc dpkg-source: info: extracting macs in macs-2.2.7.1 dpkg-source: info: unpacking macs_2.2.7.1.orig.tar.gz dpkg-source: info: unpacking macs_2.2.7.1-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying keep_debug dpkg-source: info: applying link-libm.patch dpkg-source: info: applying no-pip.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/605/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='21b35f1879144352bf27ce47f85536fb' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='605' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.oTWtIB4b/pbuilderrc_qDfT --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.oTWtIB4b/b1 --logfile b1/build.log macs_2.2.7.1-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos12-i386 6.1.0-17-686-pae #1 SMP PREEMPT_DYNAMIC Debian 6.1.69-1 (2023-12-30) i686 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Mar 27 2022 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Jan 20 2022 dmesg lrwxrwxrwx 1 root root 8 Nov 7 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 7 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Jan 25 2023 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Jan 25 2023 fgrep -rwxr-xr-x 1 root root 71928 Jan 20 2022 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 210488 Jan 25 2023 grep -rwxr-xr-x 2 root root 2346 Apr 10 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 10 2022 gzexe -rwxr-xr-x 1 root root 100952 Apr 10 2022 gzip -rwxr-xr-x 1 root root 21916 Nov 7 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Jan 20 2022 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Jan 20 2022 more -rwsr-xr-x 1 root root 50720 Jan 20 2022 mount -rwxr-xr-x 1 root root 13856 Jan 20 2022 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 7 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jan 7 09:27 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Jan 20 2022 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 17 2021 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30236 Jan 20 2022 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Apr 10 2022 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Jan 20 2022 wdctl lrwxrwxrwx 1 root root 8 Nov 7 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 10 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 10 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 10 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 10 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 10 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 10 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 10 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 10 2022 zless -rwxr-xr-x 1 root root 1842 Apr 10 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 10 2022 znew I: user script /srv/workspace/pbuilder/605/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all-dev, python3-numpy, python3-setuptools, python3-pip, python3-pytest, cython3, help2man, procps dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 17763 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pip; however: Package python3-pip is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on procps; however: Package procps is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu67{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libncurses6{a} libpipeline1{a} libprocps8{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} openssl{a} po-debconf{a} procps{a} python-pip-whl{a} python3{a} python3-all{a} python3-all-dev{a} python3-attr{a} python3-dev{a} python3-distutils{a} python3-importlib-metadata{a} python3-iniconfig{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pip{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pyparsing{a} python3-pytest{a} python3-setuptools{a} python3-six{a} python3-toml{a} python3-wheel{a} python3-zipp{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libgpm2 libltdl-dev libmail-sendmail-perl lynx psmisc python3-pygments wget 0 packages upgraded, 89 newly installed, 0 to remove and 0 not upgraded. Need to get 44.7 MB of archives. After unpacking 171 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-8+deb11u1 [149 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 liblocale-gettext-perl i386 1.07-4+b1 [19.4 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libpython3.9-minimal i386 3.9.2-1 [801 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2+deb11u5 [101 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 python3.9-minimal i386 3.9.2-1 [1956 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 python3-minimal i386 3.9.2-3 [38.2 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 media-types all 4.0.0 [30.3 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 tzdata all 2021a-1+deb11u10 [286 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 libmpdec3 i386 2.5.1-1 [91.9 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 readline-common all 8.1-1 [73.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 libreadline8 i386 8.1-1 [173 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 libpython3.9-stdlib i386 3.9.2-1 [1703 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 python3.9 i386 3.9.2-1 [466 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 libpython3-stdlib i386 3.9.2-3 [21.4 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 python3 i386 3.9.2-3 [37.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 libncurses6 i386 6.2+20201114-2+deb11u2 [110 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 libprocps8 i386 2:3.3.17-5 [64.2 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 procps i386 2:3.3.17-5 [501 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 openssl i386 1.1.1w-0+deb11u1 [869 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 ca-certificates all 20210119 [158 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3+deb11u1 [273 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3+deb11u1 [135 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3+deb11u1 [69.2 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 cython3 i386 0.29.21-3+b1 [1303 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-7 [8775 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7+deb11u4 [728 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 52 http://deb.debian.org/debian bullseye/main i386 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 53 http://deb.debian.org/debian bullseye/main i386 python3-distutils all 3.9.2-1 [143 kB] Get: 54 http://deb.debian.org/debian bullseye/main i386 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 help2man i386 1.48.1 [190 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 libblas3 i386 3.9.0-3+deb11u1 [147 kB] Get: 57 http://deb.debian.org/debian bullseye/main i386 libexpat1-dev i386 2.2.10-2+deb11u5 [149 kB] Get: 58 http://deb.debian.org/debian bullseye/main i386 libgfortran5 i386 10.2.1-6 [643 kB] Get: 59 http://deb.debian.org/debian bullseye/main i386 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 60 http://deb.debian.org/debian bullseye/main i386 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 61 http://deb.debian.org/debian bullseye/main i386 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 62 http://deb.debian.org/debian bullseye/main i386 liblapack3 i386 3.9.0-3+deb11u1 [1960 kB] Get: 63 http://deb.debian.org/debian bullseye/main i386 libpython3.9 i386 3.9.2-1 [1715 kB] Get: 64 http://deb.debian.org/debian bullseye/main i386 libpython3.9-dev i386 3.9.2-1 [3822 kB] Get: 65 http://deb.debian.org/debian bullseye/main i386 libpython3-dev i386 3.9.2-3 [21.7 kB] Get: 66 http://deb.debian.org/debian bullseye/main i386 libpython3-all-dev i386 3.9.2-3 [1068 B] Get: 67 http://deb.debian.org/debian bullseye/main i386 python-pip-whl all 20.3.4-4+deb11u1 [1948 kB] Get: 68 http://deb.debian.org/debian bullseye/main i386 python3-all i386 3.9.2-3 [1060 B] Get: 69 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2+deb11u2 [194 kB] Get: 70 http://deb.debian.org/debian bullseye/main i386 python3.9-dev i386 3.9.2-1 [515 kB] Get: 71 http://deb.debian.org/debian bullseye/main i386 python3-dev i386 3.9.2-3 [24.8 kB] Get: 72 http://deb.debian.org/debian bullseye/main i386 python3-all-dev i386 3.9.2-3 [1068 B] Get: 73 http://deb.debian.org/debian bullseye/main i386 python3-attr all 20.3.0-1 [52.9 kB] Get: 74 http://deb.debian.org/debian bullseye/main i386 python3-six all 1.16.0-2 [17.5 kB] Get: 75 http://deb.debian.org/debian bullseye/main i386 python3-more-itertools all 4.2.0-3 [42.7 kB] Get: 76 http://deb.debian.org/debian bullseye/main i386 python3-zipp all 1.0.0-3 [6060 B] Get: 77 http://deb.debian.org/debian bullseye/main i386 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get: 78 http://deb.debian.org/debian bullseye/main i386 python3-iniconfig all 1.1.1-1 [6308 B] Get: 79 http://deb.debian.org/debian bullseye/main i386 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 80 http://deb.debian.org/debian bullseye/main i386 python3-numpy i386 1:1.19.5-1 [3600 kB] Get: 81 http://deb.debian.org/debian bullseye/main i386 python3-pyparsing all 2.4.7-1 [109 kB] Get: 82 http://deb.debian.org/debian bullseye/main i386 python3-packaging all 20.9-2 [33.5 kB] Get: 83 http://deb.debian.org/debian bullseye/main i386 python3-setuptools all 52.0.0-4 [366 kB] Get: 84 http://deb.debian.org/debian bullseye/main i386 python3-wheel all 0.34.2-1 [24.0 kB] Get: 85 http://deb.debian.org/debian bullseye/main i386 python3-pip all 20.3.4-4+deb11u1 [337 kB] Get: 86 http://deb.debian.org/debian bullseye/main i386 python3-pluggy all 0.13.0-6 [22.3 kB] Get: 87 http://deb.debian.org/debian bullseye/main i386 python3-py all 1.10.0-1 [94.2 kB] Get: 88 http://deb.debian.org/debian bullseye/main i386 python3-toml all 0.10.1-1 [15.9 kB] Get: 89 http://deb.debian.org/debian bullseye/main i386 python3-pytest all 6.0.2-2 [211 kB] Fetched 44.7 MB in 18s (2542 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 17763 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8+deb11u1_i386.deb ... Unpacking bsdextrautils (2.36.1-8+deb11u1) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../1-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. 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Unpacking libpython3.9-dev:i386 (3.9.2-1) ... Selecting previously unselected package libpython3-dev:i386. Preparing to unpack .../46-libpython3-dev_3.9.2-3_i386.deb ... Unpacking libpython3-dev:i386 (3.9.2-3) ... Selecting previously unselected package libpython3-all-dev:i386. Preparing to unpack .../47-libpython3-all-dev_3.9.2-3_i386.deb ... Unpacking libpython3-all-dev:i386 (3.9.2-3) ... Selecting previously unselected package python-pip-whl. Preparing to unpack .../48-python-pip-whl_20.3.4-4+deb11u1_all.deb ... Unpacking python-pip-whl (20.3.4-4+deb11u1) ... Selecting previously unselected package python3-all. Preparing to unpack .../49-python3-all_3.9.2-3_i386.deb ... Unpacking python3-all (3.9.2-3) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../50-zlib1g-dev_1%3a1.2.11.dfsg-2+deb11u2_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.11.dfsg-2+deb11u2) ... Selecting previously unselected package python3.9-dev. 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Selecting previously unselected package python3-zipp. Preparing to unpack .../57-python3-zipp_1.0.0-3_all.deb ... Unpacking python3-zipp (1.0.0-3) ... Selecting previously unselected package python3-importlib-metadata. Preparing to unpack .../58-python3-importlib-metadata_1.6.0-2_all.deb ... Unpacking python3-importlib-metadata (1.6.0-2) ... Selecting previously unselected package python3-iniconfig. Preparing to unpack .../59-python3-iniconfig_1.1.1-1_all.deb ... Unpacking python3-iniconfig (1.1.1-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../60-python3-pkg-resources_52.0.0-4_all.deb ... Unpacking python3-pkg-resources (52.0.0-4) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../61-python3-numpy_1%3a1.19.5-1_i386.deb ... Unpacking python3-numpy (1:1.19.5-1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../62-python3-pyparsing_2.4.7-1_all.deb ... 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Universal Time is now: Mon Jan 15 21:18:50 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:i386 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libexpat1-dev:i386 (2.2.10-2+deb11u5) ... Setting up libncurses6:i386 (6.2+20201114-2+deb11u2) ... Setting up libsigsegv2:i386 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libgfortran5:i386 (10.2.1-6) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-2+deb11u2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libmpdec3:i386 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up openssl (1.1.1w-0+deb11u1) ... Setting up libelf1:i386 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:i386 (2.9.10+dfsg-6.7+deb11u4) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up libprocps8:i386 (2:3.3.17-5) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up liblapack3:i386 (3.9.0-3+deb11u1) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libreadline8:i386 (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up help2man (1.48.1) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up python-pip-whl (20.3.4-4+deb11u1) ... Setting up libpython3.9-stdlib:i386 (3.9.2-1) ... Setting up libpython3-stdlib:i386 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libpython3.9:i386 (3.9.2-1) ... Setting up python3.9 (3.9.2-1) ... Setting up libpython3.9-dev:i386 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-wheel (0.34.2-1) ... Setting up python3-six (1.16.0-2) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up cython3 (0.29.21-3+b1) ... Setting up python3-toml (0.10.1-1) ... Setting up python3.9-dev (3.9.2-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-iniconfig (1.1.1-1) ... Setting up python3-attr (20.3.0-1) ... Setting up libpython3-dev:i386 (3.9.2-3) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-py (1.10.0-1) ... Setting up python3-all (3.9.2-3) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-packaging (20.9-2) ... Setting up libpython3-all-dev:i386 (3.9.2-3) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-pip (20.3.4-4+deb11u1) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-all-dev (3.9.2-3) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up python3-pluggy (0.13.0-6) ... Setting up python3-pytest (6.0.2-2) ... Processing triggers for libc-bin (2.31-13+deb11u6) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/macs-2.2.7.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../macs_2.2.7.1-3_source.changes dpkg-buildpackage: info: source package macs dpkg-buildpackage: info: source version 2.2.7.1-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 dpkg-source: info: using options from macs-2.2.7.1/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/ debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/macs-2.2.7.1' dh_auto_clean || true I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build' (and everything under it) 'build/bdist.linux-i386' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -Rf test/macs2.2.7.1-3* test/speedtest* rm -f debian/*.1 debian/*-man-include make[1]: Leaving directory '/build/reproducible-path/macs-2.2.7.1' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/macs-2.2.7.1' for pyx in $(find MACS2/ -name "*.pyx"); do \ rm -f ${pyx%%.pyx}.{h,c}; touch ${pyx}; done dh_auto_build I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/cmbreps_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/Constants.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/OutputWriter.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/bdgopt_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/filterdup_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/bdgdiff_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/OptValidator.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/diffpeak_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/bdgbroadcall_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/pileup_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/bdgpeakcall_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/bdgcmp_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/__init__.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/refinepeak_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/predictd_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/callpeak_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/randsample_cmd.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 creating /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO copying MACS2/IO/__init__.py -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO copying MACS2/khash.pxd -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 copying MACS2/cPosValCalculation.pxd -> /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2 running build_ext cythoning MACS2/Prob.pyx to MACS2/Prob.c cythoning MACS2/IO/Parser.pyx to MACS2/IO/Parser.c cythoning MACS2/Pileup.pyx to MACS2/Pileup.c cythoning MACS2/PeakModel.pyx to MACS2/PeakModel.c cythoning MACS2/PeakDetect.pyx to MACS2/PeakDetect.c cythoning MACS2/Signal.pyx to MACS2/Signal.c cythoning MACS2/IO/PeakIO.pyx to MACS2/IO/PeakIO.c cythoning MACS2/IO/BedGraphIO.pyx to MACS2/IO/BedGraphIO.c cythoning MACS2/IO/FixWidthTrack.pyx to MACS2/IO/FixWidthTrack.c cythoning MACS2/IO/PairedEndTrack.pyx to MACS2/IO/PairedEndTrack.c cythoning MACS2/IO/BedGraph.pyx to MACS2/IO/BedGraph.c cythoning MACS2/IO/ScoreTrack.pyx to MACS2/IO/ScoreTrack.c cythoning MACS2/IO/CallPeakUnit.pyx to MACS2/IO/CallPeakUnit.c building 'MACS2.Prob' extension creating build creating build/temp.linux-i386-3.9 creating build/temp.linux-i386-3.9/MACS2 i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/Prob.c -o build/temp.linux-i386-3.9/MACS2/Prob.o -w -O3 -ffast-math i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/MACS2/Prob.o -lm -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Prob.cpython-39-i386-linux-gnu.so building 'MACS2.IO.Parser' extension creating build/temp.linux-i386-3.9/MACS2/IO i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/IO/Parser.c -o build/temp.linux-i386-3.9/MACS2/IO/Parser.o -w -O3 -ffast-math i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/MACS2/IO/Parser.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/Parser.cpython-39-i386-linux-gnu.so building 'MACS2.Pileup' extension i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/Pileup.c -o build/temp.linux-i386-3.9/MACS2/Pileup.o -w -O3 -ffast-math i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/cPosValCalculation.c -o build/temp.linux-i386-3.9/MACS2/cPosValCalculation.o -w -O3 -ffast-math i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/MACS2/Pileup.o build/temp.linux-i386-3.9/MACS2/cPosValCalculation.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Pileup.cpython-39-i386-linux-gnu.so building 'MACS2.PeakModel' extension i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/PeakModel.c -o build/temp.linux-i386-3.9/MACS2/PeakModel.o -w -O3 -ffast-math i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/MACS2/PeakModel.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/PeakModel.cpython-39-i386-linux-gnu.so building 'MACS2.PeakDetect' extension i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c MACS2/PeakDetect.c -o build/temp.linux-i386-3.9/MACS2/PeakDetect.o -w -O3 -ffast-math i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/MACS2/PeakDetect.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/PeakDetect.cpython-39-i386-linux-gnu.so building 'MACS2.Signal' extension i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/Signal.c -o build/temp.linux-i386-3.9/MACS2/Signal.o -w -O3 -ffast-math i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/MACS2/Signal.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Signal.cpython-39-i386-linux-gnu.so building 'MACS2.IO.PeakIO' extension i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c MACS2/IO/PeakIO.c -o build/temp.linux-i386-3.9/MACS2/IO/PeakIO.o -w -O3 -ffast-math i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/MACS2/IO/PeakIO.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/PeakIO.cpython-39-i386-linux-gnu.so building 'MACS2.IO.BedGraphIO' extension i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c MACS2/IO/BedGraphIO.c -o build/temp.linux-i386-3.9/MACS2/IO/BedGraphIO.o -w -O3 -ffast-math i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/MACS2/IO/BedGraphIO.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/BedGraphIO.cpython-39-i386-linux-gnu.so building 'MACS2.IO.FixWidthTrack' extension i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/IO/FixWidthTrack.c -o build/temp.linux-i386-3.9/MACS2/IO/FixWidthTrack.o -w -O3 -ffast-math i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/MACS2/IO/FixWidthTrack.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/FixWidthTrack.cpython-39-i386-linux-gnu.so building 'MACS2.IO.PairedEndTrack' extension i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/IO/PairedEndTrack.c -o build/temp.linux-i386-3.9/MACS2/IO/PairedEndTrack.o -w -O3 -ffast-math i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/MACS2/IO/PairedEndTrack.o -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/PairedEndTrack.cpython-39-i386-linux-gnu.so building 'MACS2.IO.BedGraph' extension i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.9 -c MACS2/IO/BedGraph.c -o build/temp.linux-i386-3.9/MACS2/IO/BedGraph.o -w -O3 -ffast-math i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/MACS2/IO/BedGraph.o -lm -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/BedGraph.cpython-39-i386-linux-gnu.so building 'MACS2.IO.ScoreTrack' extension i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/IO/ScoreTrack.c -o build/temp.linux-i386-3.9/MACS2/IO/ScoreTrack.o -w -O3 -ffast-math i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/MACS2/IO/ScoreTrack.o -lm -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/ScoreTrack.cpython-39-i386-linux-gnu.so building 'MACS2.IO.CallPeakUnit' extension i686-linux-gnu-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-hfHQKB/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/lib/python3/dist-packages/numpy/core/include -I/usr/include/python3.9 -c MACS2/IO/CallPeakUnit.c -o build/temp.linux-i386-3.9/MACS2/IO/CallPeakUnit.o -w -O3 -ffast-math i686-linux-gnu-gcc -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/reproducible-path/macs-2.2.7.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-i386-3.9/MACS2/IO/CallPeakUnit.o -lm -o /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/CallPeakUnit.cpython-39-i386-linux-gnu.so running build_scripts creating build/scripts-3.9 copying and adjusting bin/macs2 -> build/scripts-3.9 changing mode of build/scripts-3.9/macs2 from 644 to 755 PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS2/build/ help2man \ --no-discard-stderr --no-info \ --name "macs2 \- Model\-based Analysis for ChIP\-Sequencing" "python3 bin/macs2" > debian/macs2.1 for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do printf \ "[NAME]\nmacs2_${subcommand} \- Model\-based Analysis for ChIP\-Sequencing\n" \ > debian/macs2_${subcommand}-man-include; done for subcommand in callpeak bdgpeakcall bdgbroadcall bdgcmp bdgopt cmbreps bdgdiff filterdup predictd pileup randsample refinepeak; do \ PYTHONPATH=./.pybuild/cpython3_$(py3versions -v -d)_MACS2/build/ help2man \ --no-discard-stderr --no-info --version-string="2.2.7.1" \ --include debian/macs2_${subcommand}-man-include \ "python3 bin/macs2 ${subcommand}" > \ debian/macs2_${subcommand}.1; done make[1]: Leaving directory '/build/reproducible-path/macs-2.2.7.1' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/macs-2.2.7.1' dh_auto_test I: pybuild base:232: cd /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build; python3.9 -m pytest test ============================= test session starts ============================== platform linux -- Python 3.9.2, pytest-6.0.2, py-1.10.0, pluggy-0.13.0 rootdir: /build/reproducible-path/macs-2.2.7.1 collected 42 items test/test_BedGraph.py .... [ 9%] test/test_FixWidthTrack.py .... [ 19%] test/test_PairedEndTrack.py .... [ 28%] test/test_Parser.py ... [ 35%] test/test_PeakIO.py ... [ 42%] test/test_Pileup.py .. [ 47%] test/test_Prob.py ................ [ 85%] test/test_ScoreTrack.py .... [ 95%] test/test_Signal.py s. [100%] ======================== 41 passed, 1 skipped in 1.00s ========================= cd test && for PY3VER in 3.9; do \ export PATH=/build/reproducible-path/macs-2.2.7.1/build/scripts-${PY3VER}:$PATH \ && export PYTHONPATH=/build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_${PY3VER}_MACS2/build \ && ./cmdlinetest macs2.2.7.1-3-${PY3VER} ; done 1. callpeak 1.1 callpeak narrow 1.2 callpeak broad 1.3 callpeak on PE narrow/broad 2. pileup 3. filterdup 4. predictd 5. randsample 6. refinepeak 7. bdgcmp 8. bdgpeakcall 9. bdgbroadcall 10. bdgdiff 11. cmbreps 12. bdgopt 13. 50k contigs with buffersize 13.1 callpeak 13.2 filterdup 13.3 pileup 13.4 randsample 14. search for errors or warnings in log files checking macs2.2.7.1-3-3.9_run_50kcontigs/run_callpeak_50kcontigs.log... ... clear! checking macs2.2.7.1-3-3.9_run_50kcontigs/run_filterdup_50kcontigs.log... ... clear! checking macs2.2.7.1-3-3.9_run_50kcontigs/run_pileup_ChIP.bed.log... ... clear! checking macs2.2.7.1-3-3.9_run_50kcontigs/run_randsample.log... ... clear! checking macs2.2.7.1-3-3.9_run_bdgbroadcall/run_bdgbroadcall_w_prefix.log... ... clear! checking macs2.2.7.1-3-3.9_run_bdgcmp/run_bdgcmp.log... ... clear! checking macs2.2.7.1-3-3.9_run_bdgdiff/run_bdgdiff_w_o_file.log... ... clear! checking macs2.2.7.1-3-3.9_run_bdgdiff/run_bdgdiff_w_prefix.log... ... clear! checking macs2.2.7.1-3-3.9_run_bdgopt/run_bdgopt_max.log... ... clear! checking macs2.2.7.1-3-3.9_run_bdgopt/run_bdgopt_min.log... ... clear! checking macs2.2.7.1-3-3.9_run_bdgpeakcall/run_bdgpeakcall_cutoff.log... ... clear! checking macs2.2.7.1-3-3.9_run_bdgpeakcall/run_bdgpeakcall_w_prefix.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_broad/run_callpeak_broad.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_narrow/run_callpeak_narrow0.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_narrow/run_callpeak_narrow1.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_narrow/run_callpeak_narrow2.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_narrow/run_callpeak_narrow3.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_narrow/run_callpeak_narrow4.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_narrow/run_callpeak_narrow5.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_narrow_revert/run_callpeak_narrow_revert.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_pe_broad/run_callpeak_bampe_broad.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_pe_broad/run_callpeak_bedpe_broad.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_pe_narrow/run_callpeak_bampe_narrow.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_pe_narrow/run_callpeak_bedpe_narrow.log... ... clear! checking macs2.2.7.1-3-3.9_run_callpeak_pe_narrow/run_callpeak_pe_narrow_onlychip.log... ... clear! checking macs2.2.7.1-3-3.9_run_cmbreps/run_cmbreps_fisher.log... ... clear! checking macs2.2.7.1-3-3.9_run_cmbreps/run_cmbreps_max.log... ... clear! checking macs2.2.7.1-3-3.9_run_cmbreps/run_cmbreps_mean.log... ... clear! checking macs2.2.7.1-3-3.9_run_filterdup/run_filterdup.log... ... clear! checking macs2.2.7.1-3-3.9_run_filterdup/run_filterdup_d.log... ... clear! checking macs2.2.7.1-3-3.9_run_filterdup/run_filterdup_pe.log... ... clear! checking macs2.2.7.1-3-3.9_run_filterdup/run_filterdup_pe_d.log... ... clear! checking macs2.2.7.1-3-3.9_run_pileup/run_pileup_CTRL.bed.log... ... clear! checking macs2.2.7.1-3-3.9_run_pileup/run_pileup_CTRLPE.bampe.log... ... clear! checking macs2.2.7.1-3-3.9_run_pileup/run_pileup_CTRLPE.bedpe.log... ... clear! checking macs2.2.7.1-3-3.9_run_pileup/run_pileup_ChIP.bed.log... ... clear! checking macs2.2.7.1-3-3.9_run_pileup/run_pileup_ChIPPE.bampe.log... ... clear! checking macs2.2.7.1-3-3.9_run_pileup/run_pileup_ChIPPE.bedpe.log... ... clear! checking macs2.2.7.1-3-3.9_run_predictd/run_predictd.log... ... clear! checking macs2.2.7.1-3-3.9_run_randsample/run_randsample.log... ... clear! checking macs2.2.7.1-3-3.9_run_randsample/run_randsample_bampe.log... ... clear! checking macs2.2.7.1-3-3.9_run_randsample/run_randsample_bedpe.log... ... clear! checking macs2.2.7.1-3-3.9_run_refinepeak/run_refinepeak_w_ofile.log... ... clear! checking macs2.2.7.1-3-3.9_run_refinepeak/run_refinepeak_w_prefix.log... ... clear! 15. compare with standard outputs 14.1.1 checking 50kcontigs run_callpeak_50kcontigs_peaks.narrowPeak ... ... success! 14.1.2 checking 50kcontigs run_callpeak_50kcontigs_summits.bed ... ... success! 14.1.3 checking 50kcontigs run_filterdup_result.bed ... ... success! 14.1.4 checking 50kcontigs run_pileup_ChIP.bed.bdg ... ... success! 14.2.1 checking bdgbroadcall run_bdgbroadcall_w_prefix_c2.0_C1.50_l200_g30_G800_broad.bed12 ... ... success! 14.3.1 checking bdgcmp run_bdgcmp_FE.bdg ... ... success! 14.3.2 checking bdgcmp run_bdgcmp_ppois.bdg ... ... success! 14.4.1 checking bdgdiff common.bed ... ... success! 14.4.2 checking bdgdiff cond1.bed ... ... success! 14.4.3 checking bdgdiff cond2.bed ... ... success! 14.4.4 checking bdgdiff run_bdgdiff_prefix_c3.0_common.bed ... ... success! 14.4.5 checking bdgdiff run_bdgdiff_prefix_c3.0_cond1.bed ... ... success! 14.4.6 checking bdgdiff run_bdgdiff_prefix_c3.0_cond2.bed ... ... success! 14.5.1 checking bdgpeakcall run_bdgpeakcall_w_prefix_c2.0_l200_g30_peaks.narrowPeak ... ... success! 14.6.1 checking callpeak_broad run_callpeak_broad_control_lambda.bdg ... ... success! 14.6.2 checking callpeak_broad run_callpeak_broad_peaks.broadPeak ... ... success! 14.6.3 checking callpeak_broad run_callpeak_broad_peaks.gappedPeak ... ... success! 14.6.4 checking callpeak_broad run_callpeak_broad_treat_pileup.bdg ... ... success! 14.7.1 checking callpeak_narrow run_callpeak_narrow0_control_lambda.bdg ... ... success! 14.7.2 checking callpeak_narrow run_callpeak_narrow0_peaks.narrowPeak ... ... success! 14.7.3 checking callpeak_narrow run_callpeak_narrow0_summits.bed ... ... success! 14.7.4 checking callpeak_narrow run_callpeak_narrow0_treat_pileup.bdg ... ... success! 14.7.5 checking callpeak_narrow run_callpeak_narrow1_control_lambda.bdg ... ... success! 14.7.6 checking callpeak_narrow run_callpeak_narrow1_peaks.narrowPeak ... ... success! 14.7.7 checking callpeak_narrow run_callpeak_narrow1_summits.bed ... ... success! 14.7.8 checking callpeak_narrow run_callpeak_narrow1_treat_pileup.bdg ... ... success! 14.7.9 checking callpeak_narrow run_callpeak_narrow2_control_lambda.bdg ... ... success! 14.7.10 checking callpeak_narrow run_callpeak_narrow2_peaks.narrowPeak ... ... success! 14.7.11 checking callpeak_narrow run_callpeak_narrow2_summits.bed ... ... success! 14.7.12 checking callpeak_narrow run_callpeak_narrow2_treat_pileup.bdg ... ... success! 14.7.13 checking callpeak_narrow run_callpeak_narrow3_control_lambda.bdg ... ... success! 14.7.14 checking callpeak_narrow run_callpeak_narrow3_peaks.narrowPeak ... ... success! 14.7.15 checking callpeak_narrow run_callpeak_narrow3_summits.bed ... ... success! 14.7.16 checking callpeak_narrow run_callpeak_narrow3_treat_pileup.bdg ... ... success! 14.7.17 checking callpeak_narrow run_callpeak_narrow4_control_lambda.bdg ... ... success! 14.7.18 checking callpeak_narrow run_callpeak_narrow4_peaks.narrowPeak ... ... success! 14.7.19 checking callpeak_narrow run_callpeak_narrow4_summits.bed ... ... success! 14.7.20 checking callpeak_narrow run_callpeak_narrow4_treat_pileup.bdg ... ... success! 14.7.21 checking callpeak_narrow run_callpeak_narrow5_control_lambda.bdg ... ... success! 14.7.22 checking callpeak_narrow run_callpeak_narrow5_peaks.narrowPeak ... ... success! 14.7.23 checking callpeak_narrow run_callpeak_narrow5_summits.bed ... ... success! 14.7.24 checking callpeak_narrow run_callpeak_narrow5_treat_pileup.bdg ... ... success! 14.8.1 checking callpeak_narrow_revert run_callpeak_narrow_revert_control_lambda.bdg ... ... success! 14.8.2 checking callpeak_narrow_revert run_callpeak_narrow_revert_peaks.narrowPeak ... ... success! 14.8.3 checking callpeak_narrow_revert run_callpeak_narrow_revert_summits.bed ... ... success! 14.8.4 checking callpeak_narrow_revert run_callpeak_narrow_revert_treat_pileup.bdg ... ... success! 14.9.1 checking callpeak_pe_broad run_callpeak_bampe_broad_control_lambda.bdg ... ... success! 14.9.2 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.broadPeak ... ... success! 14.9.3 checking callpeak_pe_broad run_callpeak_bampe_broad_peaks.gappedPeak ... ... success! 14.9.4 checking callpeak_pe_broad run_callpeak_bampe_broad_treat_pileup.bdg ... ... success! 14.9.5 checking callpeak_pe_broad run_callpeak_bedpe_broad_control_lambda.bdg ... ... success! 14.9.6 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.broadPeak ... ... success! 14.9.7 checking callpeak_pe_broad run_callpeak_bedpe_broad_peaks.gappedPeak ... ... success! 14.9.8 checking callpeak_pe_broad run_callpeak_bedpe_broad_treat_pileup.bdg ... ... success! 14.10.1 checking callpeak_pe_narrow run_callpeak_bampe_narrow_control_lambda.bdg ... ... success! 14.10.2 checking callpeak_pe_narrow run_callpeak_bampe_narrow_peaks.narrowPeak ... ... success! 14.10.3 checking callpeak_pe_narrow run_callpeak_bampe_narrow_summits.bed ... ... success! 14.10.4 checking callpeak_pe_narrow run_callpeak_bampe_narrow_treat_pileup.bdg ... ... success! 14.10.5 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_control_lambda.bdg ... ... success! 14.10.6 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_peaks.narrowPeak ... ... success! 14.10.7 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_summits.bed ... ... success! 14.10.8 checking callpeak_pe_narrow run_callpeak_bedpe_narrow_treat_pileup.bdg ... ... success! 14.10.9 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_control_lambda.bdg ... ... success! 14.10.10 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_peaks.narrowPeak ... ... success! 14.10.11 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_summits.bed ... ... success! 14.10.12 checking callpeak_pe_narrow run_callpeak_pe_narrow_onlychip_treat_pileup.bdg ... ... success! 14.11.1 checking cmbreps run_cmbreps_fisher.bdg ... ... success! 14.11.2 checking cmbreps run_cmbreps_max.bdg ... ... success! 14.11.3 checking cmbreps run_cmbreps_mean.bdg ... ... success! 14.12.1 checking filterdup run_filterdup_result.bed ... ... success! 14.12.2 checking filterdup run_filterdup_result_pe.bedpe ... ... success! 14.13.1 checking pileup run_pileup_CTRL.bed.bdg ... ... success! 14.13.2 checking pileup run_pileup_CTRLPE.bampe.bdg ... ... success! 14.13.3 checking pileup run_pileup_CTRLPE.bedpe.bdg ... ... success! 14.13.4 checking pileup run_pileup_ChIP.bed.bdg ... ... success! 14.13.5 checking pileup run_pileup_ChIPPE.bampe.bdg ... ... success! 14.13.6 checking pileup run_pileup_ChIPPE.bedpe.bdg ... ... success! 14.14.1 checking refinepeak run_refinepeak_w_ofile.bed ... ... success! 14.14.2 checking refinepeak run_refinepeak_w_prefix_refinepeak.bed ... ... success! 14.15.1 checking bdgopt run_bdgopt_max.bdg ... ... success! 14.15.2 checking bdgopt run_bdgopt_min.bdg ... ... success! 16. brief speed test CPU time (mm:ss): 00:02:03 Max mem (KB): 199968 make[1]: Leaving directory '/build/reproducible-path/macs-2.2.7.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/reproducible-path/macs-2.2.7.1/debian/macs running install running build running build_py running build_ext skipping 'MACS2/Prob.c' Cython extension (up-to-date) skipping 'MACS2/IO/Parser.c' Cython extension (up-to-date) skipping 'MACS2/Pileup.c' Cython extension (up-to-date) skipping 'MACS2/PeakModel.c' Cython extension (up-to-date) skipping 'MACS2/PeakDetect.c' Cython extension (up-to-date) skipping 'MACS2/Signal.c' Cython extension (up-to-date) skipping 'MACS2/IO/PeakIO.c' Cython extension (up-to-date) skipping 'MACS2/IO/BedGraphIO.c' Cython extension (up-to-date) skipping 'MACS2/IO/FixWidthTrack.c' Cython extension (up-to-date) skipping 'MACS2/IO/PairedEndTrack.c' Cython extension (up-to-date) skipping 'MACS2/IO/BedGraph.c' Cython extension (up-to-date) skipping 'MACS2/IO/ScoreTrack.c' Cython extension (up-to-date) skipping 'MACS2/IO/CallPeakUnit.c' Cython extension (up-to-date) running build_scripts running install_lib creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9 creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/cmbreps_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/PeakDetect.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Constants.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Pileup.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/khash.pxd -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/OutputWriter.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/bdgopt_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Signal.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/PeakModel.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/filterdup_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/bdgdiff_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/CallPeakUnit.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/FixWidthTrack.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/BedGraphIO.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/PeakIO.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/BedGraph.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/__init__.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/ScoreTrack.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/Parser.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/IO/PairedEndTrack.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/OptValidator.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/diffpeak_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/bdgbroadcall_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/pileup_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/bdgpeakcall_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/bdgcmp_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__init__.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/refinepeak_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/Prob.cpython-39-i386-linux-gnu.so -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/predictd_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/cPosValCalculation.pxd -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/OutputWriter.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/bdgcmp_cmd.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/bdgdiff_cmd.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/filterdup_cmd.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/predictd_cmd.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/bdgopt_cmd.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/Constants.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/refinepeak_cmd.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/pileup_cmd.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/callpeak_cmd.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/cmbreps_cmd.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/randsample_cmd.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/__init__.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/bdgbroadcall_cmd.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/bdgpeakcall_cmd.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/__pycache__/OptValidator.cpython-39.pyc -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__pycache__ copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/callpeak_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 copying /build/reproducible-path/macs-2.2.7.1/.pybuild/cpython3_3.9_MACS2/build/MACS2/randsample_cmd.py -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2 byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/cmbreps_cmd.py to cmbreps_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/Constants.py to Constants.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/OutputWriter.py to OutputWriter.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/bdgopt_cmd.py to bdgopt_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/filterdup_cmd.py to filterdup_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/bdgdiff_cmd.py to bdgdiff_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/IO/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/OptValidator.py to OptValidator.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/diffpeak_cmd.py to diffpeak_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/bdgbroadcall_cmd.py to bdgbroadcall_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/pileup_cmd.py to pileup_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/bdgpeakcall_cmd.py to bdgpeakcall_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/bdgcmp_cmd.py to bdgcmp_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/__init__.py to __init__.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/refinepeak_cmd.py to refinepeak_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/predictd_cmd.py to predictd_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/callpeak_cmd.py to callpeak_cmd.cpython-39.pyc byte-compiling /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2/randsample_cmd.py to randsample_cmd.cpython-39.pyc running install_egg_info running egg_info creating MACS2.egg-info writing MACS2.egg-info/PKG-INFO writing dependency_links to MACS2.egg-info/dependency_links.txt writing requirements to MACS2.egg-info/requires.txt writing top-level names to MACS2.egg-info/top_level.txt writing manifest file 'MACS2.egg-info/SOURCES.txt' reading manifest file 'MACS2.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no previously-included files found matching '.gitignore' warning: no previously-included files found matching '.travis.yml' no previously-included directories found matching '.github' no previously-included directories found matching 'DOCKER' writing manifest file 'MACS2.egg-info/SOURCES.txt' Copying MACS2.egg-info to /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/lib/python3.9/dist-packages/MACS2-2.2.7.1.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/bin copying build/scripts-3.9/macs2 -> /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/bin changing mode of /build/reproducible-path/macs-2.2.7.1/debian/macs/usr/bin/macs2 to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package macs: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package macs: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'macs' in '../macs_2.2.7.1-3_i386.deb'. dpkg-deb: building package 'macs-dbgsym' in '../macs-dbgsym_2.2.7.1-3_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../macs_2.2.7.1-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from macs-2.2.7.1/debian/source/options: --extend-diff-ignore=(^|/)(.*\.c)$|.*[.]egg-info/ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/605 and its subdirectories I: Current time: Mon Jan 15 09:29:17 -12 2024 I: pbuilder-time-stamp: 1705354157 Mon Jan 15 21:29:18 UTC 2024 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Mon Jan 15 21:29:18 UTC 2024 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Mon Jan 15 21:36:00 UTC 2024 I: Deleting $TMPDIR on ionos16-i386.debian.net. Mon Jan 15 21:36:00 UTC 2024 I: macs_2.2.7.1-3_i386.changes: Format: 1.8 Date: Wed, 15 Jul 2020 23:27:39 +0200 Source: macs Binary: macs macs-dbgsym Architecture: i386 Version: 2.2.7.1-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: macs - Model-based Analysis of ChIP-Seq on short reads sequencers Closes: 965073 Changes: macs (2.2.7.1-3) unstable; urgency=medium . * Link properly with libm Closes: #965073 * debhelper-compat 13 (routine-update) Checksums-Sha1: 15597e0fdf072475002178d5af714aeba3b97c4e 6471760 macs-dbgsym_2.2.7.1-3_i386.deb b01e3221665df275e805573d1b14893eff21312b 7108 macs_2.2.7.1-3_i386.buildinfo ebc07bd0e14b417171217c6d7787d891edec5883 2508560 macs_2.2.7.1-3_i386.deb Checksums-Sha256: a44b0adc6c968e2eb0371de9c5e0a9d477b6587484d8a0264e77e847c85101c6 6471760 macs-dbgsym_2.2.7.1-3_i386.deb 4ebe5bb7047ab04cc955c22ab6c04fa491c709cdc81a4f2cdafca384323fca0c 7108 macs_2.2.7.1-3_i386.buildinfo c8fd05109d1745927f547667d002abb083e621653cd4bf973c1d8b4ca8db1218 2508560 macs_2.2.7.1-3_i386.deb Files: e41e73c1ad66d4ed5289c30460dbd728 6471760 debug optional macs-dbgsym_2.2.7.1-3_i386.deb 0f4f39a5dc5ac36d6987444e91931ba1 7108 science optional macs_2.2.7.1-3_i386.buildinfo 3c444a9005c09f1ef1dc80abd2190fa7 2508560 science optional macs_2.2.7.1-3_i386.deb Mon Jan 15 21:36:01 UTC 2024 I: diffoscope 240 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.oTWtIB4b/macs_2.2.7.1-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.oTWtIB4b/macs_2.2.7.1-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.oTWtIB4b/macs_2.2.7.1-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.oTWtIB4b/b1/macs_2.2.7.1-3_i386.changes /srv/reproducible-results/rbuild-debian/r-b-build.oTWtIB4b/b2/macs_2.2.7.1-3_i386.changes ## close_archive (total time: 0.000s) 0.000s 24 calls diffoscope.comparators.xz.XzContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer 0.000s 12 calls diffoscope.comparators.deb.DebTarContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer ## command (total time: 201.364s) 80.657s 3924 calls readelf 77.390s 450 calls diff 36.771s 880 calls objdump 3.217s 24 calls xz 3.030s 8 calls objcopy 0.294s 88 calls strings 0.002s 1 call cmp 0.002s 1 call cmp (external) 0.002s 25 calls cmp (internal) ## compare_files (cumulative) (total time: 529.613s) 98.938s 1 call abc.DotChangesFile 98.916s 2 calls abc.DebFile 98.830s 4 calls abc.XzFile 97.856s 2 calls abc.DebDataTarFile 97.452s 8 calls abc.ElfFile 35.477s 40 calls diffoscope.comparators.elf.ElfCodeSection 1.929s 124 calls diffoscope.comparators.elf.ElfSection 0.098s 8 calls diffoscope.comparators.elf.ElfStringSection 0.062s 2 calls abc.TarFile 0.034s 4 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.012s 1 call abc.TextFile 0.010s 2 calls abc.Md5sumsFile ## container_extract (total time: 3.519s) 3.218s 24 calls diffoscope.comparators.xz.XzContainer 0.209s 156 calls diffoscope.comparators.deb.DebTarContainer 0.083s 28 calls diffoscope.comparators.deb.DebContainer 0.008s 20 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 0.417s) 0.417s 110 calls linediff ## has_same_content_as (total time: 0.006s) 0.002s 2 calls abc.DebDataTarFile 0.001s 8 calls abc.ElfFile 0.001s 124 calls diffoscope.comparators.elf.ElfSection 0.001s 6 calls abc.TextFile 0.000s 4 calls abc.Md5sumsFile 0.000s 4 calls abc.XzFile 0.000s 40 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 2 calls abc.TarFile 0.000s 2 calls abc.DebFile 0.000s 1 call abc.DotChangesFile 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 8 calls diffoscope.comparators.elf.ElfStringSection 0.000s 4 calls diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 100.199s) 100.198s 2 calls outputs 0.001s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 24 calls diffoscope.comparators.xz.XzContainer 0.000s 12 calls diffoscope.comparators.deb.DebTarContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer ## output (total time: 0.910s) 0.907s 1 call html 0.002s 1 call text 0.001s 1 call json ## recognizes (total time: 3.121s) 2.406s 828 calls diffoscope.comparators.utils.archive.ArchiveMember 0.326s 2616 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.186s 2728 calls diffoscope.comparators.elf.ElfSection 0.091s 12 calls diffoscope.comparators.binary.FilesystemFile 0.064s 880 calls diffoscope.comparators.elf.ElfCodeSection 0.032s 216 calls diffoscope.comparators.debian.DebControlMember 0.013s 176 calls diffoscope.comparators.elf.ElfStringSection 0.003s 88 calls diffoscope.comparators.elf.MonkeyPatchedElfSection 0.000s 32 calls abc.Md5sumsFile 0.000s 10 calls abc.DotChangesFile 0.000s 4 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink ## specialize (total time: 0.424s) 0.424s 206 calls specialize Mon Jan 15 21:37:41 UTC 2024 E: macs failed to build reproducibly in bullseye on i386. Mon Jan 15 21:37:41 UTC 2024 E: diffoscope 240 found issues, please check https://tests.reproducible-builds.org/debian/dbd/bullseye/i386/macs_2.2.7.1-3.diffoscope.html Mon Jan 15 21:37:48 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Jan 15 21:37:48 UTC 2024 I: Submitting 8.0K b1/macs_2.2.7.1-3_i386.buildinfo.asc Mon Jan 15 21:37:49 UTC 2024 I: Submitting 8.0K b2/macs_2.2.7.1-3_i386.buildinfo.asc Mon Jan 15 21:37:49 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Jan 15 21:37:49 UTC 2024 I: Done submitting .buildinfo files. Mon Jan 15 21:37:49 UTC 2024 I: Removing signed macs_2.2.7.1-3_i386.buildinfo.asc files: removed './b1/macs_2.2.7.1-3_i386.buildinfo.asc' removed './b2/macs_2.2.7.1-3_i386.buildinfo.asc'