Fri Jul 2 14:02:52 UTC 2021 I: starting to build infernal/bullseye/i386 on jenkins on '2021-07-02 14:02' Fri Jul 2 14:02:52 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_11/11655/console.log Fri Jul 2 14:02:52 UTC 2021 I: Downloading source for bullseye/infernal=1.1.4-1 --2021-07-02 14:02:53-- http://cdn-fastly.deb.debian.org/debian/pool/main/i/infernal/infernal_1.1.4-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2146 (2.1K) Saving to: ‘infernal_1.1.4-1.dsc’ 0K .. 100% 280M=0s 2021-07-02 14:02:53 (280 MB/s) - ‘infernal_1.1.4-1.dsc’ saved [2146/2146] Fri Jul 2 14:02:53 UTC 2021 I: infernal_1.1.4-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: infernal Binary: infernal, infernal-doc Architecture: any-amd64 any-i386 all Version: 1.1.4-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille Homepage: http://eddylab.org/infernal/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/infernal Vcs-Git: https://salsa.debian.org/med-team/infernal.git Testsuite: autopkgtest Testsuite-Triggers: python3 Build-Depends: debhelper-compat (= 13), libperl4-corelibs-perl, python3 Package-List: infernal deb science optional arch=any-amd64,any-i386 infernal-doc deb doc optional arch=all Checksums-Sha1: dac3fa456ca2a10744796e9597323abc86de4848 29499238 infernal_1.1.4.orig.tar.gz 6870b80d426c6b53be7e8ce6f246207acca54fc5 9840 infernal_1.1.4-1.debian.tar.xz Checksums-Sha256: f9493c7dee9fbf25f6405706818883d24b9f5e455121a0662c96c8f0307f95fc 29499238 infernal_1.1.4.orig.tar.gz c86a9c2617dc27a7121d4a9c80aa7c4327ddb1561a97ef3a97e1a6cfe237dcda 9840 infernal_1.1.4-1.debian.tar.xz Files: 225e811cc66637e7fe220ed68c2b2dd1 29499238 infernal_1.1.4.orig.tar.gz 294903b28f4285c58dad9e2eada254db 9840 infernal_1.1.4-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/TtR8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGtUw/8C2Wf6E9geU+YLeLpW155+I9JEgKMKgPM M8DK8gXWAapZRY8QhJ/kNvim64XeeMKY7BbmYdAocAJJHqiu9kpEaU41oq9tz5Bh dZlgYFt9/LoAt3VBjUzphEQcJJeKimWB6fhimPM9MMJkVGRTF3pe4QK3P6iHR6yk PZFs51bcTDLm7BUecbuG17NWMK2O+/WoJYi6WWJbPZWYEbMSc6N1GtGM4UUKzyTA 03hKVFEXzjBxwSBa01ox1nE6Fs2a1kM2jYCc6t6svLLf0f2m+FOhrzsSDejlWPaB pv1ZBiUEwvgb2wH98N1yD5ABAUs7yZQuajBwwN1cTMV4P43iEdXafXJ383kHDIUi QAWEgI8Oi2MqR18YDCkhwyedELzU+0ySuiZDVlwkwTCT9KAK6YNW5XbSETxl6Kfx MhB4Ld0IXB+rGCotMamRBju2yDEYpPFBLnzRp7VSreq7Mz59hEg+xZV5ZEDrjVL+ 4Bl4Sv46MtK28hmCjLjIYXQrgmZma4GCDY/eGF+R93/epNaKz81cNzUb5+2645pS JMp9m3FFPaMzO2GVhwk2/+S80GT3y9mu6KJNoWtO2Cdq/8QrTGAus0H9Bo/A8UFC k3Z1rAwqQqVdS7kwljkXerFJIc5Z1Q7taStGyVbgdWAsh6G10pi7MdJTfb8I7EX2 FmUd5P5/IHo= =G9LF -----END PGP SIGNATURE----- Fri Jul 2 14:02:53 UTC 2021 I: Checking whether the package is not for us Fri Jul 2 14:02:53 UTC 2021 I: Starting 1st build on remote node ionos2-i386.debian.net. Fri Jul 2 14:02:53 UTC 2021 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Fri Jul 2 14:22:38 UTC 2021 I: Deleting $TMPDIR on ionos2-i386.debian.net. unshare: unshare failed: Cannot allocate memory W: pbuilder: unshare CLONE_NEWNET not available I: pbuilder: network access is available during build! I: Current time: Fri Jul 2 02:03:11 -12 2021 I: pbuilder-time-stamp: 1625234591 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [infernal_1.1.4-1.dsc] I: copying [./infernal_1.1.4.orig.tar.gz] I: copying [./infernal_1.1.4-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.oL7yEWG6/trustedkeys.kbx': General error gpgv: Signature made Fri Dec 11 06:06:23 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./infernal_1.1.4-1.dsc dpkg-source: info: extracting infernal in infernal-1.1.4 dpkg-source: info: unpacking infernal_1.1.4.orig.tar.gz dpkg-source: info: unpacking infernal_1.1.4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening dpkg-source: info: applying reproducible_build.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/14689/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=10' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='3a6941db615f4a4baf545b86567db78b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='14689' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.5rmT8PCLap/pbuilderrc_spue --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.5rmT8PCLap/b1 --logfile b1/build.log infernal_1.1.4-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos2-i386 4.19.0-17-686-pae #1 SMP Debian 4.19.194-2 (2021-06-21) i686 GNU/Linux I: ls -l /bin total 5796 -rwxr-xr-x 1 root root 1367848 Jun 21 14:25 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 7 02:38 more -rwsr-xr-x 1 root root 50720 Feb 7 02:38 mount -rwxr-xr-x 1 root root 13856 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:25 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 1 21:25 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Feb 7 02:38 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 21:55 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 7 02:38 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/14689/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libperl4-corelibs-perl, python3 dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libperl4-corelibs-perl; however: Package libperl4-corelibs-perl is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libperl4-corelibs-perl{a} libpipeline1{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-minimal{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 44 newly installed, 0 to remove and 0 not upgraded. Need to get 24.1 MB of archives. After unpacking 88.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 libpython3.9-minimal i386 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2 [98.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 python3.9-minimal i386 3.9.2-1 [1956 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 python3-minimal i386 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libmpdec3 i386 2.5.1-1 [91.9 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 libreadline8 i386 8.1-1 [173 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 libpython3.9-stdlib i386 3.9.2-1 [1703 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 python3.9 i386 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 libpython3-stdlib i386 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 python3 i386 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-6 [8776 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 libperl4-corelibs-perl all 0.004-2 [38.4 kB] Fetched 24.1 MB in 6s (3873 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-7_i386.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../1-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../3-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:i386. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_i386.deb ... Unpacking libpython3.9-minimal:i386 (3.9.2-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../6-libexpat1_2.2.10-2_i386.deb ... Unpacking libexpat1:i386 (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_i386.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:i386 (3.9.2-1) ... Setting up libexpat1:i386 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20542 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_i386.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:i386. 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Unpacking libperl4-corelibs-perl (0.004-2) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:i386 (1.5.3-1) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:i386 (67.1-6) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libperl4-corelibs-perl (0.004-2) ... Setting up libmagic1:i386 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libsigsegv2:i386 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libmpdec3:i386 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:i386 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:i386 (2.9.10+dfsg-6.7) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libreadline8:i386 (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libpython3.9-stdlib:i386 (3.9.2-1) ... Setting up libpython3-stdlib:i386 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up python3.9 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/infernal-1.1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package infernal dpkg-buildpackage: info: source version 1.1.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/infernal-1.1.4' if [ -r Makefile ]; then /usr/bin/make distclean; fi cd documentation/userguide && if [ -r Makefile ]; then make distclean; fi cd easel/documentation && if [ -r Makefile ]; then make distclean; fi dh_clean *.1 */*.log *.log */Makefile Makefile documentation/manpages/*.1 rm -f testsuite/i49.tbl make[1]: Leaving directory '/build/infernal-1.1.4' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/infernal-1.1.4' dh_auto_configure -a ./configure --build=i686-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/i386-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking configure: Configuring Infernal for your system. checking build system type... i686-pc-linux-gnu checking host system type... i686-pc-linux-gnu checking whether to compile using MPI... no checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking for gcc option to accept ISO C99... none needed checking for gcc option to accept ISO Standard C... (cached) none needed checking how to run the C preprocessor... gcc -E checking for a BSD-compatible install... /usr/bin/install -c checking for ranlib... ranlib checking for ar... /usr/bin/ar checking whether ln -s works... yes checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking whether gcc is Clang... no checking whether pthreads work with -pthread... yes checking for joinable pthread attribute... PTHREAD_CREATE_JOINABLE checking whether more special flags are required for pthreads... no checking for PTHREAD_PRIO_INHERIT... yes checking whether gcc can compile our Altivec/VMX code... no checking whether gcc can compile our SSE code... yes configure: Activating Intel/AMD SSE vector DP implementation checking whether _MM_SET_FLUSH_ZERO_MODE is supported... yes checking compiler support --start-group... yes checking for gzip... /bin/gzip checking for python3... /usr/bin/python3 checking for library containing clock_gettime... none required checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking endian.h usability... yes checking endian.h presence... yes checking for endian.h... yes checking for inttypes.h... (cached) yes checking for stdint.h... (cached) yes checking for unistd.h... (cached) yes checking for sys/types.h... (cached) yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking for sys/sysctl.h... yes checking for uint8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for off_t... yes checking whether byte ordering is bigendian... no checking for __attribute__((noreturn))... yes checking for __attribute__((format))... yes checking for mkstemp... yes checking for popen... yes checking for putenv... yes checking for strcasecmp... yes checking for strsep... yes checking for times... yes checking for getpid... yes checking for sysctl... yes checking for sysconf... yes checking for getcwd... yes checking for chmod... yes checking for stat... yes checking for fstat... yes checking for erfc... no checking for ntohs... yes checking for ntohl... yes checking for htons... yes checking for htonl... yes checking for library containing socket... none required checking for library containing inet_pton... none required checking for _LARGEFILE_SOURCE value needed for large files... no checking for special C compiler options needed for large files... no checking for _FILE_OFFSET_BITS value needed for large files... 64 configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating testsuite/Makefile config.status: creating rmark/Makefile config.status: creating documentation/Makefile config.status: creating documentation/man/Makefile config.status: creating documentation/userguide/Makefile config.status: creating src/impl_sse/Makefile config.status: creating documentation/userguide/titlepage.tex config.status: creating documentation/userguide/copyright.tex config.status: creating documentation/man/cmalign.man config.status: creating documentation/man/cmbuild.man config.status: creating documentation/man/cmcalibrate.man config.status: creating documentation/man/cmconvert.man config.status: creating documentation/man/cmemit.man config.status: creating documentation/man/cmfetch.man config.status: creating documentation/man/cmpress.man config.status: creating documentation/man/cmscan.man config.status: creating documentation/man/cmsearch.man config.status: creating documentation/man/cmsearch_dual.man config.status: creating documentation/man/cmstat.man config.status: creating documentation/man/infernal.man config.status: creating documentation/man/sse_cmsearch.man config.status: creating hmmer/Makefile config.status: creating hmmer/src/Makefile config.status: creating hmmer/testsuite/Makefile config.status: creating hmmer/profmark/Makefile config.status: creating hmmer/src/impl_sse/Makefile config.status: creating hmmer/documentation/Makefile config.status: creating hmmer/documentation/man/Makefile config.status: creating hmmer/documentation/userguide/Makefile config.status: creating hmmer/documentation/userguide/inclusions/Makefile config.status: creating hmmer/libdivsufsort/Makefile config.status: creating easel/Makefile config.status: creating easel/miniapps/Makefile config.status: creating easel/testsuite/Makefile config.status: creating easel/documentation/Makefile config.status: creating hmmer/documentation/userguide/titlepage.tex config.status: creating hmmer/documentation/userguide/titlepage_daemon.tex config.status: creating hmmer/documentation/userguide/copyright.tex config.status: creating hmmer/documentation/man/alimask.man config.status: creating hmmer/documentation/man/hmmalign.man config.status: creating hmmer/documentation/man/hmmbuild.man config.status: creating hmmer/documentation/man/hmmc2.man config.status: creating hmmer/documentation/man/hmmconvert.man config.status: creating hmmer/documentation/man/hmmemit.man config.status: creating hmmer/documentation/man/hmmer.man config.status: creating hmmer/documentation/man/hmmfetch.man config.status: creating hmmer/documentation/man/hmmlogo.man config.status: creating hmmer/documentation/man/hmmpgmd.man config.status: creating hmmer/documentation/man/hmmpgmd_shard.man config.status: creating hmmer/documentation/man/hmmpress.man config.status: creating hmmer/documentation/man/hmmscan.man config.status: creating hmmer/documentation/man/hmmsearch.man config.status: creating hmmer/documentation/man/hmmsim.man config.status: creating hmmer/documentation/man/hmmstat.man config.status: creating hmmer/documentation/man/jackhmmer.man config.status: creating hmmer/documentation/man/makehmmerdb.man config.status: creating hmmer/documentation/man/nhmmer.man config.status: creating hmmer/documentation/man/nhmmscan.man config.status: creating hmmer/documentation/man/phmmer.man config.status: creating easel/miniapps/esl-afetch.man config.status: creating easel/miniapps/esl-alimanip.man config.status: creating easel/miniapps/esl-alimap.man config.status: creating easel/miniapps/esl-alimask.man config.status: creating easel/miniapps/esl-alimerge.man config.status: creating easel/miniapps/esl-alipid.man config.status: creating easel/miniapps/esl-alirev.man config.status: creating easel/miniapps/esl-alistat.man config.status: creating easel/miniapps/esl-compalign.man config.status: creating easel/miniapps/esl-compstruct.man config.status: creating easel/miniapps/esl-construct.man config.status: creating easel/miniapps/esl-histplot.man config.status: creating easel/miniapps/esl-mask.man config.status: creating easel/miniapps/esl-mixdchlet.man config.status: creating easel/miniapps/esl-reformat.man config.status: creating easel/miniapps/esl-selectn.man config.status: creating easel/miniapps/esl-seqrange.man config.status: creating easel/miniapps/esl-seqstat.man config.status: creating easel/miniapps/esl-sfetch.man config.status: creating easel/miniapps/esl-shuffle.man config.status: creating easel/miniapps/esl-ssdraw.man config.status: creating easel/miniapps/esl-translate.man config.status: creating easel/miniapps/esl-weight.man config.status: creating easel/decoy_config.h config.status: creating src/config.h config.status: creating hmmer/src/p7_config.h config.status: creating easel/esl_config.h config.status: creating hmmer/libdivsufsort/divsufsort.h INFERNAL configuration: compiler: gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread linker: -Wl,-z,relro -Wl,-z,now libraries: DP implementation: sse python3: /usr/bin/python3 Now do 'make' to build INFERNAL, and optionally: 'make check' to run self tests, 'make install' to install programs and man pages. make[1]: Leaving directory '/build/infernal-1.1.4' debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/infernal-1.1.4' dh_auto_build -a -- V=1 make -j10 V=1 make[2]: Entering directory '/build/infernal-1.1.4' make -C easel all make[3]: Entering directory '/build/infernal-1.1.4/easel' gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c easel.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_alloc.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_alphabet.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_arr2.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_arr3.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_bitfield.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_buffer.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_cluster.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_composition.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_cpu.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_dirichlet.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_distance.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_dmatrix.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_dsqdata.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_exponential.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_fileparser.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_gamma.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_gencode.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_getopts.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_gev.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_graph.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_gumbel.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_heap.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_histogram.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_hmm.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_huffman.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_hyperexp.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_json.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_keyhash.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_matrixops.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_mem.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_minimizer.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_mixdchlet.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_mixgev.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_mpi.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msa.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msacluster.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msafile.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msafile2.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msafile_a2m.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msafile_afa.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msafile_clustal.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msafile_phylip.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msafile_psiblast.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msafile_selex.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msafile_stockholm.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msashuffle.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_msaweight.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_normal.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_paml.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_quicksort.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_random.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_rand64.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_randomseq.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_ratematrix.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_recorder.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_red_black.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_regexp.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_rootfinder.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_scorematrix.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_sq.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_sqio.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_sqio_ascii.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_sqio_ncbi.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_ssi.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_stack.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_stats.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_stopwatch.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_stretchexp.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_subcmd.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_threads.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_tree.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_varint.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_vectorops.c In file included from esl_threads.c:24: /usr/include/i386-linux-gnu/sys/sysctl.h:21:2: warning: #warning "The header is deprecated and will be removed." [-Wcpp] 21 | #warning "The header is deprecated and will be removed." | ^~~~~~~ gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_weibull.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_workqueue.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_wuss.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_sse.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_avx.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_avx512.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_neon.c gcc -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -c esl_vmx.c /usr/bin/ar -r libeasel.a easel.o esl_alloc.o esl_alphabet.o esl_arr2.o esl_arr3.o esl_bitfield.o esl_buffer.o esl_cluster.o esl_composition.o esl_cpu.o esl_dirichlet.o esl_distance.o esl_dmatrix.o esl_dsqdata.o esl_exponential.o esl_fileparser.o esl_gamma.o esl_gencode.o esl_getopts.o esl_gev.o esl_graph.o esl_gumbel.o esl_heap.o esl_histogram.o esl_hmm.o esl_huffman.o esl_hyperexp.o esl_json.o esl_keyhash.o esl_matrixops.o esl_mem.o esl_minimizer.o esl_mixdchlet.o esl_mixgev.o esl_mpi.o esl_msa.o esl_msacluster.o esl_msafile.o esl_msafile2.o esl_msafile_a2m.o esl_msafile_afa.o esl_msafile_clustal.o esl_msafile_phylip.o esl_msafile_psiblast.o esl_msafile_selex.o esl_msafile_stockholm.o esl_msashuffle.o esl_msaweight.o esl_normal.o esl_paml.o esl_quicksort.o esl_random.o esl_rand64.o esl_randomseq.o esl_ratematrix.o esl_recorder.o esl_red_black.o esl_regexp.o esl_rootfinder.o esl_scorematrix.o esl_sq.o esl_sqio.o esl_sqio_ascii.o esl_sqio_ncbi.o esl_ssi.o esl_stack.o esl_stats.o esl_stopwatch.o esl_stretchexp.o esl_subcmd.o esl_threads.o esl_tree.o esl_varint.o esl_vectorops.o esl_weibull.o esl_workqueue.o esl_wuss.o esl_sse.o esl_avx.o esl_avx512.o esl_neon.o esl_vmx.o > /dev/null 2>&1 make -C miniapps all make[4]: Entering directory '/build/infernal-1.1.4/easel/miniapps' gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-afetch esl-afetch.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-alimanip esl-alimanip.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-alimap esl-alimap.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-alimask esl-alimask.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-alimerge esl-alimerge.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-alipid esl-alipid.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-alirev esl-alirev.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-alistat esl-alistat.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-compalign esl-compalign.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-compstruct esl-compstruct.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-construct esl-construct.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-histplot esl-histplot.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-mask esl-mask.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-mixdchlet esl-mixdchlet.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-reformat esl-reformat.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-selectn esl-selectn.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-seqrange esl-seqrange.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-seqstat esl-seqstat.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-sfetch esl-sfetch.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-shuffle esl-shuffle.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-ssdraw esl-ssdraw.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-translate esl-translate.c -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o esl-weight esl-weight.c -leasel -lm gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -c cmd_alistat.c gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -c cmd_downsample.c gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -c cmd_filter.c gcc -I. -I.. -I. -I./.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -c cmd_index.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L.. -I. -I.. -I. -I./.. -o easel easel.c cmd_alistat.o cmd_downsample.o cmd_filter.o cmd_index.o -leasel -lm make[4]: Leaving directory '/build/infernal-1.1.4/easel/miniapps' make[3]: Leaving directory '/build/infernal-1.1.4/easel' make -C hmmer/libdivsufsort all make[3]: Entering directory '/build/infernal-1.1.4/hmmer/libdivsufsort' gcc -I. -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -o divsufsort.o -c divsufsort.c /usr/bin/ar rc libdivsufsort.a divsufsort.o make[3]: Leaving directory '/build/infernal-1.1.4/hmmer/libdivsufsort' make -C hmmer all make[3]: Entering directory '/build/infernal-1.1.4/hmmer' make -C ../easel all make[4]: Entering directory '/build/infernal-1.1.4/easel' make -C miniapps all make[5]: Entering directory '/build/infernal-1.1.4/easel/miniapps' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/build/infernal-1.1.4/easel/miniapps' make[4]: Leaving directory '/build/infernal-1.1.4/easel' make -C libdivsufsort all make[4]: Entering directory '/build/infernal-1.1.4/hmmer/libdivsufsort' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/infernal-1.1.4/hmmer/libdivsufsort' make -C src all make[4]: Entering directory '/build/infernal-1.1.4/hmmer/src' gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o alimask.o -c alimask.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o build.o -c build.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o cachedb.o -c cachedb.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o cachedb_shard.o -c cachedb_shard.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o emit.o -c emit.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o errors.o -c errors.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o evalues.o -c evalues.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o eweight.o -c eweight.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o generic_decoding.o -c generic_decoding.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o generic_fwdback.o -c generic_fwdback.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o generic_fwdback_chk.o -c generic_fwdback_chk.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o generic_fwdback_banded.o -c generic_fwdback_banded.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o generic_null2.o -c generic_null2.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o generic_msv.o -c generic_msv.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o generic_optacc.o -c generic_optacc.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o generic_stotrace.o -c generic_stotrace.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o generic_viterbi.o -c generic_viterbi.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o generic_vtrace.o -c generic_vtrace.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o h2_io.o -c h2_io.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o heatmap.o -c heatmap.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmlogo.o -c hmmlogo.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmdmstr.o -c hmmdmstr.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmdmstr_shard.o -c hmmdmstr_shard.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmd_search_status.o -c hmmd_search_status.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmdwrkr.o -c hmmdwrkr.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmdwrkr_shard.o -c hmmdwrkr_shard.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmdutils.o -c hmmdutils.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmer.o -c hmmer.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o logsum.o -c logsum.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o modelconfig.o -c modelconfig.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o modelstats.o -c modelstats.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o mpisupport.o -c mpisupport.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o seqmodel.o -c seqmodel.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o tracealign.o -c tracealign.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_alidisplay.o -c p7_alidisplay.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_bg.o -c p7_bg.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_builder.o -c p7_builder.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_domain.o -c p7_domain.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_domaindef.o -c p7_domaindef.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_gbands.o -c p7_gbands.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_gmx.o -c p7_gmx.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_gmxb.o -c p7_gmxb.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_gmxchk.o -c p7_gmxchk.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_hit.o -c p7_hit.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_hmm.o -c p7_hmm.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_hmmcache.o -c p7_hmmcache.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_hmmd_search_stats.o -c p7_hmmd_search_stats.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_hmmfile.o -c p7_hmmfile.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_hmmwindow.o -c p7_hmmwindow.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_pipeline.o -c p7_pipeline.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_prior.o -c p7_prior.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_profile.o -c p7_profile.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_spensemble.o -c p7_spensemble.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_tophits.o -c p7_tophits.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_trace.o -c p7_trace.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o p7_scoredata.o -c p7_scoredata.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmpgmd2msa.o -c hmmpgmd2msa.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o fm_alphabet.o -c fm_alphabet.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o fm_general.o -c fm_general.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o fm_sse.o -c fm_sse.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o fm_ssv.o -c fm_ssv.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmalign.o -c hmmalign.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmbuild.o -c hmmbuild.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmconvert.o -c hmmconvert.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmemit.o -c hmmemit.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmfetch.o -c hmmfetch.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmpgmd.o -c hmmpgmd.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmpgmd_shard.o -c hmmpgmd_shard.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmpress.o -c hmmpress.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmscan.o -c hmmscan.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmsearch.o -c hmmsearch.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmsim.o -c hmmsim.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmstat.o -c hmmstat.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o jackhmmer.o -c jackhmmer.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o phmmer.o -c phmmer.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o nhmmer.o -c nhmmer.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o nhmmscan.o -c nhmmscan.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o makehmmerdb.o -c makehmmerdb.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmc2.o -c hmmc2.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../../easel -I../libdivsufsort -I../../easel -I. -I. -o hmmerfm-exactmatch.o -c hmmerfm-exactmatch.c /usr/bin/ar -r libhmmer.a build.o cachedb.o cachedb_shard.o emit.o errors.o evalues.o eweight.o generic_decoding.o generic_fwdback.o generic_fwdback_chk.o generic_fwdback_banded.o generic_null2.o generic_msv.o generic_optacc.o generic_stotrace.o generic_viterbi.o generic_vtrace.o h2_io.o heatmap.o hmmlogo.o hmmdmstr.o hmmdmstr_shard.o hmmd_search_status.o hmmdwrkr.o hmmdwrkr_shard.o hmmdutils.o hmmer.o logsum.o modelconfig.o modelstats.o mpisupport.o seqmodel.o tracealign.o p7_alidisplay.o p7_bg.o p7_builder.o p7_domain.o p7_domaindef.o p7_gbands.o p7_gmx.o p7_gmxb.o p7_gmxchk.o p7_hit.o p7_hmm.o p7_hmmcache.o p7_hmmd_search_stats.o p7_hmmfile.o p7_hmmwindow.o p7_pipeline.o p7_prior.o p7_profile.o p7_spensemble.o p7_tophits.o p7_trace.o p7_scoredata.o hmmpgmd2msa.o fm_alphabet.o fm_general.o fm_sse.o fm_ssv.o > /dev/null 2>&1 make -C impl_sse libhmmer-impl.stamp make[5]: Entering directory '/build/infernal-1.1.4/hmmer/src/impl_sse' gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o decoding.o -c decoding.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o fwdback.o -c fwdback.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o io.o -c io.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o ssvfilter.o -c ssvfilter.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o msvfilter.o -c msvfilter.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o null2.o -c null2.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o optacc.o -c optacc.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o stotrace.o -c stotrace.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o vitfilter.o -c vitfilter.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o p7_omx.o -c p7_omx.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o p7_oprofile.o -c p7_oprofile.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../../easel -I../../../easel -I. -I.. -I. -I../../../src -I./.. -o mpi.o -c mpi.c /usr/bin/ar -r ../libhmmer.a decoding.o fwdback.o io.o ssvfilter.o msvfilter.o null2.o optacc.o stotrace.o vitfilter.o p7_omx.o p7_oprofile.o mpi.o > /dev/null 2>&1 make[5]: Leaving directory '/build/infernal-1.1.4/hmmer/src/impl_sse' gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o alimask alimask.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmalign hmmalign.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmbuild hmmbuild.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmconvert hmmconvert.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmemit hmmemit.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmfetch hmmfetch.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmlogo hmmlogo.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmpgmd hmmpgmd.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmpgmd_shard hmmpgmd_shard.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmpress hmmpress.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmscan hmmscan.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmsearch hmmsearch.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmsim hmmsim.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmstat hmmstat.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o jackhmmer jackhmmer.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o phmmer phmmer.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o nhmmer nhmmer.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o nhmmscan nhmmscan.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o makehmmerdb makehmmerdb.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmc2 hmmc2.o -lhmmer -leasel -ldivsufsort -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../../easel -L./impl_sse -L../libdivsufsort -L. -o hmmerfm-exactmatch hmmerfm-exactmatch.o -lhmmer -leasel -ldivsufsort -lm make[4]: Leaving directory '/build/infernal-1.1.4/hmmer/src' make -C profmark all make[4]: Entering directory '/build/infernal-1.1.4/hmmer/profmark' gcc -I../../easel -I../../easel -I../src -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -o create-profmark.o -c create-profmark.c gcc -I../../easel -I../../easel -I../src -I../../src -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -o rocplot.o -c rocplot.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../../easel -L../src -o rocplot rocplot.o -lhmmer -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../../easel -L../src -o create-profmark create-profmark.o -lhmmer -leasel -lm make[4]: Leaving directory '/build/infernal-1.1.4/hmmer/profmark' make[3]: Leaving directory '/build/infernal-1.1.4/hmmer' make -C src all make[3]: Entering directory '/build/infernal-1.1.4/src' gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmalign.o -c cmalign.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm.o -c cm.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_alidisplay.o -c cm_alidisplay.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_alndata.o -c cm_alndata.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_dpalign.o -c cm_dpalign.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_dpalign_trunc.o -c cm_dpalign_trunc.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_dpsearch.o -c cm_dpsearch.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_dpsearch_trunc.o -c cm_dpsearch_trunc.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_dpsmall.o -c cm_dpsmall.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_file.o -c cm_file.c cm_alidisplay.c: In function 'cm_alidisplay_Create': cm_alidisplay.c:371:28: warning: '%*d' directive output between 1 and 2147483647 bytes may cause result to exceed 'INT_MAX' [-Wformat-overflow=] 371 | sprintf(ad->model+pos, "*[%*d]*", numwidth, qinset); | ^~~ cm_alidisplay.c:371:25: note: directive argument in the range [-2147483647, 2147483647] 371 | sprintf(ad->model+pos, "*[%*d]*", numwidth, qinset); | ^~~~~~~~~ In file included from /usr/include/stdio.h:867, from cm_alidisplay.c:14: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 6 and 2147483652 bytes into a destination of size 4294967295 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cm_alidisplay.c:372:27: warning: '%*d' directive output between 1 and 2147483647 bytes may cause result to exceed 'INT_MAX' [-Wformat-overflow=] 372 | sprintf(ad->aseq+pos, "*[%*d]*", numwidth, tinset); | ^~~ cm_alidisplay.c:372:24: note: directive argument in the range [-2147483647, 2147483647] 372 | sprintf(ad->aseq+pos, "*[%*d]*", numwidth, tinset); | ^~~~~~~~~ In file included from /usr/include/stdio.h:867, from cm_alidisplay.c:14: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 6 and 2147483652 bytes into a destination of size 4294967295 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_modelconfig.o -c cm_modelconfig.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_modelmaker.o -c cm_modelmaker.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_mx.o -c cm_mx.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_parsetree.o -c cm_parsetree.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_pipeline.o -c cm_pipeline.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_qdband.o -c cm_qdband.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_submodel.o -c cm_submodel.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_tophits.o -c cm_tophits.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_trunc.o -c cm_trunc.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_p7_band.o -c cm_p7_band.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_p7_domaindef.o -c cm_p7_domaindef.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_p7_modelconfig_trunc.o -c cm_p7_modelconfig_trunc.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cm_p7_modelmaker.o -c cm_p7_modelmaker.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cp9.o -c cp9.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cp9_dp.o -c cp9_dp.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cp9_modelmaker.o -c cp9_modelmaker.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cp9_mx.o -c cp9_mx.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cp9_trace.o -c cp9_trace.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o alphabet.o -c alphabet.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o display.o -c display.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o errors.o -c errors.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o eweight.o -c eweight.c display.c: In function 'CreateFancyAli': display.c:405:28: warning: '%*d' directive output between 1 and 2147483647 bytes may cause result to exceed 'INT_MAX' [-Wformat-overflow=] 405 | sprintf(ali->cseq+pos, "*[%*d]*", numwidth, qinset); | ^~~ display.c:405:25: note: directive argument in the range [-2147483647, 2147483647] 405 | sprintf(ali->cseq+pos, "*[%*d]*", numwidth, qinset); | ^~~~~~~~~ In file included from /usr/include/stdio.h:867, from display.c:12: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 6 and 2147483652 bytes into a destination of size 4294967295 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ display.c:217:28: warning: '%*d' directive output between 1 and 2147483647 bytes may cause result to exceed 'INT_MAX' [-Wformat-overflow=] 217 | sprintf(ali->cseq+pos, "*[%*d]*", numwidth, qinset); | ^~~ display.c:217:25: note: directive argument in the range [-2147483647, 2147483647] 217 | sprintf(ali->cseq+pos, "*[%*d]*", numwidth, qinset); | ^~~~~~~~~ In file included from /usr/include/stdio.h:867, from display.c:12: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 6 and 2147483652 bytes into a destination of size 4294967295 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ display.c:218:28: warning: '%*d' directive output between 1 and 2147483647 bytes may cause result to exceed 'INT_MAX' [-Wformat-overflow=] 218 | sprintf(ali->aseq+pos, "*[%*d]*", numwidth, tinset); | ^~~ display.c:218:25: note: directive argument in the range [-2147483647, 2147483647] 218 | sprintf(ali->aseq+pos, "*[%*d]*", numwidth, tinset); | ^~~~~~~~~ In file included from /usr/include/stdio.h:867, from display.c:12: /usr/include/i386-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 6 and 2147483652 bytes into a destination of size 4294967295 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o hmmband.o -c hmmband.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o logsum.o -c logsum.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o mpisupport.o -c mpisupport.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o prior.o -c prior.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o rnamat.o -c rnamat.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o stats.o -c stats.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o truncyk.o -c truncyk.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmbuild.o -c cmbuild.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmcalibrate.o -c cmcalibrate.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmconvert.o -c cmconvert.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmemit.o -c cmemit.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmfetch.o -c cmfetch.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmpress.o -c cmpress.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmscan.o -c cmscan.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmsearch.o -c cmsearch.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cmstat.o -c cmstat.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o trcyk.o -c trcyk.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o bandcyk-montecarlo-test.o -c bandcyk-montecarlo-test.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o bandcyk-truncation-test.o -c bandcyk-truncation-test.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o cp9-test.o -c cp9-test.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o sub_cm-test.o -c sub_cm-test.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../hmmer/src -I../easel -I../hmmer/src -I. -I. -o truncyk_check.o -c truncyk_check.c /usr/bin/ar -r libinfernal.a cm.o cm_alidisplay.o cm_alndata.o cm_dpalign.o cm_dpalign_trunc.o cm_dpsearch.o cm_dpsearch_trunc.o cm_dpsmall.o cm_file.o cm_modelconfig.o cm_modelmaker.o cm_mx.o cm_parsetree.o cm_pipeline.o cm_qdband.o cm_submodel.o cm_tophits.o cm_trunc.o cm_p7_band.o cm_p7_domaindef.o cm_p7_modelconfig_trunc.o cm_p7_modelmaker.o cp9.o cp9_dp.o cp9_modelmaker.o cp9_mx.o cp9_trace.o alphabet.o display.o errors.o eweight.o hmmband.o logsum.o mpisupport.o prior.o rnamat.o stats.o truncyk.o > /dev/null 2>&1 make -C impl_sse libinfernal-impl.stamp make[4]: Entering directory '/build/infernal-1.1.4/src/impl_sse' gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I../../hmmer/src -I../../hmmer/src -I. -I.. -I. -I../../src -o cm_optimized.o -c cm_optimized.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I../../hmmer/src -I../../hmmer/src -I. -I.. -I. -I../../src -o sse_cm_dpsearch.o -c sse_cm_dpsearch.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I../../hmmer/src -I../../hmmer/src -I. -I.. -I. -I../../src -o sse_cm_dpsmall.o -c sse_cm_dpsmall.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I../../hmmer/src -I../../hmmer/src -I. -I.. -I. -I../../src -o sse_cmcons_hitmx.o -c sse_cmcons_hitmx.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I../../hmmer/src -I../../hmmer/src -I. -I.. -I. -I../../src -o sse_cmcons_mscyk.o -c sse_cmcons_mscyk.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I../../hmmer/src -I../../hmmer/src -I. -I.. -I. -I../../src -o sse_util.o -c sse_util.c /usr/bin/ar -r ../libinfernal.a cm_optimized.o sse_cm_dpsearch.o sse_cm_dpsmall.o sse_cmcons_hitmx.o sse_cmcons_mscyk.o sse_util.o > /dev/null 2>&1 make[4]: Leaving directory '/build/infernal-1.1.4/src/impl_sse' gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmalign cmalign.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmbuild cmbuild.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmcalibrate cmcalibrate.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmconvert cmconvert.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmemit cmemit.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmfetch cmfetch.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmpress cmpress.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmscan cmscan.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmsearch cmsearch.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cmstat cmstat.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o trcyk trcyk.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o bandcyk-montecarlo-test bandcyk-montecarlo-test.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o bandcyk-truncation-test bandcyk-truncation-test.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o cp9-test cp9-test.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o sub_cm-test sub_cm-test.o -linfernal -lhmmer -leasel -lm gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../easel -L../hmmer/src -L./impl_sse -L. -o truncyk_check truncyk_check.o -linfernal -lhmmer -leasel -lm make[3]: Leaving directory '/build/infernal-1.1.4/src' make -C rmark all make[3]: Entering directory '/build/infernal-1.1.4/rmark' gcc -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I../src -I../src -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -o rmark-create.o -c rmark-create.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -I../easel -I../easel -I../src -I../src -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -DHAVE_CONFIG_H -o rmark-rocplot.o -c rmark-rocplot.c gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../hmmer/src -L../easel -L../src -o rmark-rocplot rmark-rocplot.o -lhmmer -leasel -lm gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -pthread -DHAVE_CONFIG_H -Wl,-z,relro -Wl,-z,now -L../hmmer/src -L../easel -L../src -o rmark-create rmark-create.o -lhmmer -leasel -lm make[3]: Leaving directory '/build/infernal-1.1.4/rmark' make -C src/impl_sse all make[3]: Entering directory '/build/infernal-1.1.4/src/impl_sse' gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -DHAVE_CONFIG_H -I../../easel -I../../easel -I../../hmmer/src -I../../hmmer/src -I. -I.. -I. -I../../src -o sse_cmsearch.o -c sse_cmsearch.c gcc -g -O2 -fdebug-prefix-map=/build/infernal-1.1.4=. -fstack-protector-strong -Wformat -Werror=format-security -msse2 -pthread -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -DHAVE_CONFIG_H -L../../easel -L../../hmmer/src -L.. -I../../easel -I../../easel -I../../hmmer/src -I../../hmmer/src -I. -I.. -I. -I../../src -o sse_cmsearch sse_cmsearch.o -linfernal -lhmmer -leasel -lm make[3]: Leaving directory '/build/infernal-1.1.4/src/impl_sse' make[2]: Leaving directory '/build/infernal-1.1.4' make[1]: Leaving directory '/build/infernal-1.1.4' dh_auto_test make -j10 check VERBOSE=1 make[1]: Entering directory '/build/infernal-1.1.4' SUBDIR easel make[2]: Entering directory '/build/infernal-1.1.4/easel' GEN esl_buffer_utest GEN esl_alphabet_utest GEN esl_dmatrix_utest GEN esl_cpu_utest GEN easel_utest GEN esl_bitfield_utest GEN esl_cluster_utest GEN esl_dirichlet_utest GEN esl_distance_utest GEN esl_alloc_utest GEN esl_dsqdata_utest GEN esl_exponential_utest GEN esl_fileparser_utest GEN esl_gamma_utest GEN esl_gencode_utest GEN esl_getopts_utest GEN esl_graph_utest GEN esl_gumbel_utest GEN esl_heap_utest GEN esl_histogram_utest GEN esl_hmm_utest GEN esl_huffman_utest GEN esl_hyperexp_utest GEN esl_json_utest GEN esl_keyhash_utest GEN esl_matrixops_utest GEN esl_mem_utest GEN esl_minimizer_utest GEN esl_mixdchlet_utest GEN esl_msa_utest GEN esl_msacluster_utest GEN esl_msafile_utest GEN esl_msafile2_utest GEN esl_msafile_a2m_utest GEN esl_msafile_afa_utest GEN esl_msafile_clustal_utest GEN esl_msafile_phylip_utest GEN esl_msafile_psiblast_utest GEN esl_msafile_selex_utest GEN esl_msafile_stockholm_utest GEN esl_msaweight_utest GEN esl_normal_utest GEN esl_quicksort_utest GEN esl_random_utest GEN esl_rand64_utest GEN esl_randomseq_utest GEN esl_ratematrix_utest GEN esl_red_black_utest GEN esl_recorder_utest GEN esl_regexp_utest GEN esl_rootfinder_utest GEN esl_scorematrix_utest GEN esl_sq_utest GEN esl_sqio_utest GEN esl_ssi_utest GEN esl_stack_utest GEN esl_stats_utest GEN esl_stretchexp_utest GEN esl_tree_utest GEN esl_varint_utest GEN esl_vectorops_utest GEN esl_weibull_utest GEN esl_wuss_utest GEN esl_sse_utest GEN esl_avx_utest GEN esl_avx512_utest GEN esl_neon_utest GEN esl_vmx_utest SUBDIR miniapps make[2]: Leaving directory '/build/infernal-1.1.4/easel' SUBDIR hmmer/libdivsufsort make[2]: Entering directory '/build/infernal-1.1.4/hmmer/libdivsufsort' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/infernal-1.1.4/hmmer/libdivsufsort' SUBDIR hmmer make[2]: Entering directory '/build/infernal-1.1.4/hmmer' SUBDIR ../easel make[3]: Entering directory '/build/infernal-1.1.4/easel' SUBDIR miniapps make[3]: Leaving directory '/build/infernal-1.1.4/easel' SUBDIR src make[3]: Entering directory '/build/infernal-1.1.4/hmmer/src' SUBDIR impl_sse CC itest_brute.o GEN generic_fwdback_chk_utest GEN generic_fwdback_utest GEN build_utest GEN generic_msv_utest GEN generic_viterbi_utest GEN generic_stotrace_utest GEN logsum_utest GEN hmmer_utest GEN modelconfig_utest GEN seqmodel_utest GEN p7_alidisplay_utest GEN p7_bg_utest GEN p7_domain_utest GEN p7_gmx_utest GEN p7_gmxchk_utest GEN p7_hit_utest GEN p7_hmmd_search_stats_utest GEN p7_hmm_utest GEN p7_hmmfile_utest GEN p7_profile_utest GEN p7_tophits_utest GEN p7_trace_utest GEN p7_scoredata_utest GEN hmmpgmd2msa_utest GEN hmmd_search_status_utest GEN itest_brute SUBDIR impl_sse make[4]: Entering directory '/build/infernal-1.1.4/hmmer/src/impl_sse' GEN decoding_utest GEN io_utest GEN fwdback_utest GEN optacc_utest GEN stotrace_utest GEN null2_utest GEN vitfilter_utest GEN msvfilter_utest make[4]: Leaving directory '/build/infernal-1.1.4/hmmer/src/impl_sse' make[3]: Leaving directory '/build/infernal-1.1.4/hmmer/src' make[2]: Leaving directory '/build/infernal-1.1.4/hmmer' SUBDIR src make[2]: Entering directory '/build/infernal-1.1.4/src' SUBDIR impl_sse CC itest_brute.o make[3]: Entering directory '/build/infernal-1.1.4/src/impl_sse' make[3]: 'libinfernal-impl.stamp' is up to date. make[3]: Leaving directory '/build/infernal-1.1.4/src/impl_sse' GEN cm_tophits_utest GEN itest_brute SUBDIR impl_sse make[3]: Entering directory '/build/infernal-1.1.4/src/impl_sse' make[3]: Nothing to be done for 'tests'. make[3]: Leaving directory '/build/infernal-1.1.4/src/impl_sse' make[2]: Leaving directory '/build/infernal-1.1.4/src' SUBDIR easel make[2]: Entering directory '/build/infernal-1.1.4/easel' SUBDIR miniapps SUBDIR testsuite make[3]: Entering directory '/build/infernal-1.1.4/easel/testsuite' Running Easel test suite... exercise 1 [ easel-utest] ... ok. exercise 2 [ alloc-utest] ... ok. exercise 3 [ alphabet-utest] ... ok. exercise 4 [ avx-utest] ... ok. exercise 5 [ avx512-utest] ... ok. exercise 6 [ bitfield-utest] ... ok. exercise 7 [ buffer-utest] ... ok. exercise 8 [ cluster-utest] ... ok. exercise 9 [ cpu-utest] ... ok. exercise 10 [ dirichlet-utest] ... ok. exercise 11 [ distance-utest] ... ok. exercise 12 [ dmatrix-utest] ... ok. exercise 13 [ dsqdata-utest] ... ok. exercise 14 [ exponential-utest] ... ok. exercise 15 [ fileparser-utest] ... ok. exercise 16 [ gamma-utest] ... ok. exercise 17 [ gencode-utest] ... ok. exercise 18 [ getopts-utest] ... ok. exercise 19 [ graph-utest] ... ok. exercise 20 [ gumbel-utest] ... ok. exercise 21 [ heap-utest] ... ok. exercise 22 [ histogram-utest] ... ok. exercise 23 [ huffman-utest] ... ok. exercise 24 [ hyperexp-utest] ... ok. exercise 25 [ json-utest] ... ok. exercise 26 [ keyhash-utest] ... ok. exercise 27 [ matrixops-utest] ... ok. exercise 28 [ mem-utest] ... ok. exercise 29 [ minimizer-utest] ... ok. exercise 30 [ mixdchlet-utest] ... ok. exercise 31 [ msa-utest] ... ok. exercise 32 [ msacluster-utest] ... ok. exercise 33 [ msafile] ... ok. exercise 34 [ msafile2] ... ok. exercise 35 [ msafile-a2m] ... ok. exercise 36 [ msafile-afa] ... ok. exercise 37 [ msafile-clustal] ... ok. exercise 38 [ msafile-phylip] ... ok. exercise 39 [ msafile-psiblast] ... ok. exercise 40 [ msafile-selex] ... ok. exercise 41 [ msafile-stockholm] ... ok. exercise 42 [ msaweight-utest] ... ok. exercise 43 [ neon-utest] ... ok. exercise 44 [ normal-utest] ... ok. exercise 45 [ quicksort-utest] ... ok. exercise 46 [ random-utest] ... ok. exercise 47 [ rand64-utest] ... ok. exercise 48 [ randomseq-utest] ... ok. exercise 49 [ ratematrix-utest] ... ok. exercise 50 [ recorder-utest] ... ok. exercise 51 [ red_black-utest] ... ok. exercise 52 [ regexp-utest] ... ok. exercise 53 [ rootfinder-utest] ... ok. exercise 54 [ scorematrix-utest] ... ok. exercise 55 [ sq-utest] ... ok. exercise 56 [ sqio-utest] ... ok. exercise 57 [ sse-utest] ... ok. exercise 58 [ ssi-utest] ... ok. exercise 59 [ stack-utest] ... ok. exercise 60 [ stats-utest] ... ok. exercise 61 [ stretchexp-utest] ... ok. exercise 62 [ tree-utest] ... ok. exercise 63 [ varint-utest] ... ok. exercise 64 [ vectorops-utest] ... ok. exercise 65 [ vmx-utest] ... ok. exercise 66 [ weibull-utest] ... ok. exercise 67 [ wuss-utest] ... ok. exercise 68 [ e2] ... ok. exercise 69 [ degen-residues] ... ok. exercise 70 [ ncbi-indices] ... ok. exercise 71 [ blank-gf] ... ok. exercise 72 [ esl-translate] ... ok. exercise 73 [ esl-afetch] ... ok. exercise 74 [ esl-alimanip] ... ok. exercise 75 [ esl-alimap] ... ok. exercise 76 [ esl-alimask] ... ok. exercise 77 [ esl-alimerge] ... ok. exercise 78 [ esl-alistat] ... ok. exercise 79 [ esl-compalign] ... ok. exercise 80 [ esl-construct] ... ok. exercise 81 [ esl-mask] ... ok. exercise 82 [ esl-seqrange] ... ok. exercise 83 [ esl-shuffle] ... ok. exercise 84 [ esl-ssdraw] ... ok. All 84 exercises at level <= 2 passed. System information: Fri Jul 2 02:10:50 -12 2021 Linux ionos2-i386 4.19.0-17-686-pae #1 SMP Debian 4.19.194-2 (2021-06-21) i686 GNU/Linux make[3]: Leaving directory '/build/infernal-1.1.4/easel/testsuite' make[2]: Leaving directory '/build/infernal-1.1.4/easel' SUBDIR hmmer/testsuite make[2]: Entering directory '/build/infernal-1.1.4/hmmer/testsuite' Running HMMER test suite... exercise 1 [ hmmer] ... ok. exercise 2 [ build] ... ok. exercise 3 [ generic_fwdback] ... ok. exercise 4 [ generic_msv] ... ok. exercise 5 [ generic_stotrace] ... ok. exercise 6 [ generic_viterbi] ... ok. exercise 7 [ hmmd_search_status] ... ok. exercise 8 [ logsum] ... ok. exercise 9 [ modelconfig] ... ok. exercise 10 [ seqmodel] ... ok. exercise 11 [ p7_alidisplay] ... ok. exercise 12 [ p7_bg] ... ok. exercise 13 [ p7_domain] ... ok. exercise 14 [ p7_gmx] ... ok. exercise 15 [ p7_hit] ... ok. exercise 16 [ p7_hmm] ... ok. exercise 17 [ p7_hmmfile] ... ok. exercise 18 [ p7_hmmd_search_stats] ... ok. exercise 19 [ p7_profile] ... ok. exercise 20 [ p7_tophits] ... ok. exercise 21 [ p7_trace] ... ok. exercise 22 [ p7_scoredata] ... ok. exercise 23 [ decoding] ... ok. exercise 24 [ fwdback] ... ok. exercise 25 [ io] ... ok. exercise 26 [ msvfilter] ... ok. exercise 27 [ null2] ... ok. exercise 28 [ optacc] ... ok. exercise 29 [ stotrace] ... ok. exercise 30 [ vitfilter] ... ok. exercise 31 [ hmmpgmd2msa] ... ok. exercise 32 [ hmmalign] ... ok. exercise 33 [ hmmalign/-h] ... ok. exercise 34 [ hmmalign/-o] ... ok. exercise 35 [ hmmalign/--mapali] ... ok. exercise 36 [ hmmalign/--trim] ... ok. exercise 37 [ hmmalign/--amino] ... ok. exercise 38 [ hmmalign/--informat] ... ok. exercise 39 [ hmmalign/--outformat] ... ok. exercise 40 [ hmmbuild] ... ok. exercise 41 [ build/-h] ... ok. exercise 42 [ build/-n] ... ok. exercise 43 [ build/-o] ... ok. exercise 44 [ build/-O] ... ok. exercise 45 [ build/--amino] ... ok. exercise 46 [ build/--dna] ... ok. exercise 47 [ build/--rna] ... ok. exercise 48 [ build/--fast] ... ok. exercise 49 [ build/--hand] ... ok. exercise 50 [ build/--symfrac] ... ok. exercise 51 [ build/--fragthresh] ... ok. exercise 52 [ build/--wpb] ... ok. exercise 53 [ build/--wgsc] ... ok. exercise 54 [ build/--wblosum] ... ok. exercise 55 [ build/--wnone] ... ok. exercise 56 [ build/--wid] ... ok. exercise 57 [ build/--eent] ... ok. exercise 58 [ build/--eclust] ... ok. exercise 59 [ build/--enone] ... ok. exercise 60 [ build/--eset] ... ok. exercise 61 [ build/--ere] ... ok. exercise 62 [ build/--esigma] ... ok. exercise 63 [ build/--eid] ... ok. exercise 64 [ build/--pnone] ... ok. exercise 65 [ build/--plaplace] ... ok. exercise 66 [ build/--EmL] ... ok. exercise 67 [ build/--EmN] ... ok. exercise 68 [ build/--EvL] ... ok. exercise 69 [ build/--EvN] ... ok. exercise 70 [ build/--EfL] ... ok. exercise 71 [ build/--EfN] ... ok. exercise 72 [ build/--Eft] ... ok. exercise 73 [ build/--informat] ... ok. exercise 74 [ build/--seed] ... ok. exercise 75 [ search] ... ok. exercise 76 [ search/-h] ... ok. exercise 77 [ search/-o] ... ok. exercise 78 [ search/-A] ... ok. exercise 79 [ search/--tblout] ... ok. exercise 80 [ search/--domtblout] ... ok. exercise 81 [ search/--pfamtblout] ... ok. exercise 82 [ search/--acc] ... ok. exercise 83 [ search/--noali] ... ok. exercise 84 [ search/--notextw] ... ok. exercise 85 [ search/--textw] ... ok. exercise 86 [ search/-E] ... ok. exercise 87 [ search/-T] ... ok. exercise 88 [ search/--domE] ... ok. exercise 89 [ search/--domT] ... ok. exercise 90 [ search/--incE] ... ok. exercise 91 [ search/--incT] ... ok. exercise 92 [ search/--incdomE] ... ok. exercise 93 [ search/--incdomT] ... ok. exercise 94 [ search/--cut_ga] ... ok. exercise 95 [ search/--cut_nc] ... ok. exercise 96 [ search/--cut_tc] ... ok. exercise 97 [ search/--max] ... ok. exercise 98 [ search/--F1] ... ok. exercise 99 [ search/--F2] ... ok. exercise 100 [ search/--F3] ... ok. exercise 101 [ search/--nobias] ... ok. exercise 102 [ search/--nonull2] ... ok. exercise 103 [ search/-Z] ... ok. exercise 104 [ search/--domZ] ... ok. exercise 105 [ search/--seed] ... ok. exercise 106 [ search/--tformat] ... ok. exercise 107 [ hmmscan] ... ok. exercise 108 [ scan/-h] ... ok. exercise 109 [ scan/-o] ... ok. exercise 110 [ scan/--tblout] ... ok. exercise 111 [ scan/--domtblout] ... ok. exercise 112 [ scan/--pfamtblout] ... ok. exercise 113 [ scan/--acc] ... ok. exercise 114 [ scan/--noali] ... ok. exercise 115 [ scan/--notextw] ... ok. exercise 116 [ scan/--textw] ... ok. exercise 117 [ scan/-E] ... ok. exercise 118 [ scan/-T] ... ok. exercise 119 [ scan/--domE] ... ok. exercise 120 [ scan/--domT] ... ok. exercise 121 [ scan/--incE] ... ok. exercise 122 [ scan/--incT] ... ok. exercise 123 [ scan/--incdomE] ... ok. exercise 124 [ scan/--incdomT] ... ok. exercise 125 [ scan/--incdomT] ... ok. exercise 126 [ scan/--cut_ga] ... ok. exercise 127 [ scan/--cut_nc] ... ok. exercise 128 [ scan/--cut_tc] ... ok. exercise 129 [ scan/--max] ... ok. exercise 130 [ scan/--F1] ... ok. exercise 131 [ scan/--F2] ... ok. exercise 132 [ scan/--F3] ... ok. exercise 133 [ scan/--nobias] ... ok. exercise 134 [ scan/--nonull2] ... ok. exercise 135 [ scan/-Z] ... ok. exercise 136 [ scan/--domZ] ... ok. exercise 137 [ scan/--seed] ... ok. exercise 138 [ scan/--qformat] ... ok. exercise 139 [ scan/--cpu] ... ok. exercise 140 [ jackhmmer] ... ok. exercise 141 [ j/-h] ... ok. exercise 142 [ j/-N] ... ok. exercise 143 [ j/-o] ... ok. exercise 144 [ j/-A] ... ok. exercise 145 [ j/--tblout] ... ok. exercise 146 [ j/--domtblout] ... ok. exercise 147 [ j/--chkhmm] ... ok. exercise 148 [ j/--chkali] ... ok. exercise 149 [ j/--acc] ... ok. exercise 150 [ j/--noali] ... ok. exercise 151 [ j/--notextw] ... ok. exercise 152 [ j/--textw] ... ok. exercise 153 [ j/--popen] ... ok. exercise 154 [ j/--pextend] ... ok. exercise 155 [ j/--mxfile] ... ok. exercise 156 [ j/-E] ... ok. exercise 157 [ j/-T] ... ok. exercise 158 [ j/--domE] ... ok. exercise 159 [ j/--domT] ... ok. exercise 160 [ j/--incE] ... ok. exercise 161 [ j/--incT] ... ok. exercise 162 [ j/--incdomE] ... ok. exercise 163 [ j/--incdomT] ... ok. exercise 164 [ j/--max] ... ok. exercise 165 [ j/--F1] ... ok. exercise 166 [ j/--F2] ... ok. exercise 167 [ j/--F3] ... ok. exercise 168 [ j/--nobias] ... ok. exercise 169 [ j/--EmL] ... ok. exercise 170 [ j/--EmN] ... ok. exercise 171 [ j/--EvL] ... ok. exercise 172 [ j/--EvN] ... ok. exercise 173 [ j/--EfL] ... ok. exercise 174 [ j/--EfN] ... ok. exercise 175 [ j/--Eft] ... ok. exercise 176 [ j/--nonull2] ... ok. exercise 177 [ j/-Z] ... ok. exercise 178 [ j/--domZ] ... ok. exercise 179 [ j/--seed] ... ok. exercise 180 [ j/--qformat] ... ok. exercise 181 [ j/--tformat] ... ok. exercise 182 [ phmmer] ... ok. exercise 183 [ phmmer/-h] ... ok. exercise 184 [ phmmer/-o] ... ok. exercise 185 [ phmmer/-A] ... ok. exercise 186 [ phmmer/--tblout] ... ok. exercise 187 [ phmmer/--domtblout] ... ok. exercise 188 [ phmmer/--pfamtblout] ... ok. exercise 189 [ phmmer/--acc] ... ok. exercise 190 [ phmmer/--noali] ... ok. exercise 191 [ phmmer/--notextw] ... ok. exercise 192 [ phmmer/--textw] ... ok. exercise 193 [ phmmer/--popen] ... ok. exercise 194 [ phmmer/--pextend] ... ok. exercise 195 [ phmmer/--mxfile] ... ok. exercise 196 [ phmmer/-E] ... ok. exercise 197 [ phmmer/-T] ... ok. exercise 198 [ phmmer/--domE] ... ok. exercise 199 [ phmmer/--domT] ... ok. exercise 200 [ phmmer/--incE] ... ok. exercise 201 [ phmmer/--incT] ... ok. exercise 202 [ phmmer/--incdomE] ... ok. exercise 203 [ phmmer/--incdomT] ... ok. exercise 204 [ phmmer/--max] ... ok. exercise 205 [ phmmer/--F1] ... ok. exercise 206 [ phmmer/--F2] ... ok. exercise 207 [ phmmer/--F3] ... ok. exercise 208 [ phmmer/--nobias] ... ok. exercise 209 [ phmmer/--EmL] ... ok. exercise 210 [ phmmer/--EmN] ... ok. exercise 211 [ phmmer/--EvL] ... ok. exercise 212 [ phmmer/--EvN] ... ok. exercise 213 [ phmmer/--EfL] ... ok. exercise 214 [ phmmer/--EfN] ... ok. exercise 215 [ phmmer/--Eft] ... ok. exercise 216 [ phmmer/--nonull2] ... ok. exercise 217 [ phmmer/-Z] ... ok. exercise 218 [ phmmer/--domZ] ... ok. exercise 219 [ phmmer/--seed] ... ok. exercise 220 [ phmmer/--qformat] ... ok. exercise 221 [ phmmer/--tformat] ... ok. exercise 222 [ nhmmer] ... ok. exercise 223 [ nhmmer/-h] ... ok. exercise 224 [ nhmmer/-o] ... ok. exercise 225 [ nhmmer/-A] ... ok. exercise 226 [ nhmmer/--tblout] ... ok. exercise 227 [ nhmmer/--dfamtblout] ... ok. exercise 228 [ nhmmer/--acc] ... ok. exercise 229 [ nhmmer/--noali] ... ok. exercise 230 [ nhmmer/--notextw] ... ok. exercise 231 [ nhmmer/--textw] ... ok. exercise 232 [ nhmmer/-E] ... ok. exercise 233 [ nhmmer/-T] ... ok. exercise 234 [ nhmmer/--incE] ... ok. exercise 235 [ nhmmer/--incT] ... ok. exercise 236 [ nhmmer/--max] ... ok. exercise 237 [ nhmmer/--F1] ... ok. exercise 238 [ nhmmer/--F2] ... ok. exercise 239 [ nhmmer/--F3] ... ok. exercise 240 [ nhmmer/--nobias] ... ok. exercise 241 [ nhmmer/--nonull2] ... ok. exercise 242 [ nhmmer/-Z] ... ok. exercise 243 [ nhmmer/--seed] ... ok. exercise 244 [ nhmmscan] ... ok. exercise 245 [ nhmmscan/-h] ... ok. exercise 246 [ nhmmscan/-o] ... ok. exercise 247 [ nhmmscan/--tblout] ... ok. exercise 248 [nhmmscan/--dfamtblout] ... ok. exercise 249 [ nhmmscan/--acc] ... ok. exercise 250 [ nhmmscan/--noali] ... ok. exercise 251 [ nhmmscan/--notextw] ... ok. exercise 252 [ nhmmscan/--textw] ... ok. exercise 253 [ nhmmscan/-E] ... ok. exercise 254 [ nhmmscan/-T] ... ok. exercise 255 [ nhmmscan/--incE] ... ok. exercise 256 [ nhmmscan/--incT] ... ok. exercise 257 [ nhmmscan/--max] ... ok. exercise 258 [ nhmmscan/--F1] ... ok. exercise 259 [ nhmmscan/--F2] ... ok. exercise 260 [ nhmmscan/--F3] ... ok. exercise 261 [ nhmmscan/--nobias] ... ok. exercise 262 [ nhmmscan/--nonull2] ... ok. exercise 263 [ nhmmscan/-Z] ... ok. exercise 264 [ nhmmscan/--seed] ... ok. exercise 265 [ hmmemit] ... ok. exercise 266 [ hmmemit/-h] ... ok. exercise 267 [ hmmemit/-c] ... ok. exercise 268 [ hmmemit/-o] ... ok. exercise 269 [ hmmemit/-p] ... ok. exercise 270 [ hmmemit/-N] ... ok. exercise 271 [ hmmemit/-L] ... ok. exercise 272 [ hmmemit/--local] ... ok. exercise 273 [ hmmemit/--unilocal] ... ok. exercise 274 [ hmmemit/--glocal] ... ok. exercise 275 [ hmmemit/--uniglocal] ... ok. exercise 276 [ hmmfetch] ... ok. exercise 277 [ hmmstat] ... ok. exercise 278 [ hmmlogo] ... ok. exercise 279 [ hmmconvert] ... ok. exercise 280 [ hmmsim] ... ok. exercise 281 [ hmmbuild_variation] ... ok. exercise 282 [ hmmscan_variation] ... ok. exercise 283 [ hmmsearch_variation] ... ok. exercise 284 [ phmmer_variation] ... ok. exercise 285 [ mapali] ... ok. exercise 286 [ fragments] ... ok. exercise 287 [ nonresidues] ... ok. exercise 288 [ opt-annotation] ... ok. exercise 289 [ dup-names] ... ok. exercise 290 [ mapali-again] ... ok. exercise 291 [ delete-corruption] ... ok. exercise 292 [ msa-integrity] ... ok. exercise 293 [ hmmemit-consensus] ... ok. exercise 294 [ hmmconvert] ... ok. exercise 295 [ stdin_pipes] ... ok. exercise 296 [ nhmmer_generic] ... ok. exercise 297 [ hmmpgmd_ga] ... ok. exercise 298 [ rewind] ... ok. exercise 299 [ hmmpgmd_shard_ga] ... ok. exercise 300 [ bad-fasta] ... ok. exercise 301 [ brute-itest] ... ok. exercise 302 [ hmmpress-itest] ... ok. exercise 303 [ h39] ... ok. exercise 304 [ h45] ... ok. exercise 305 [ h50] ... ok. exercise 306 [ h82] ... ok. exercise 307 [ iss159] ... ok. All 307 exercises at level <= 2 passed. System information: Fri Jul 2 02:11:34 -12 2021 Linux ionos2-i386 4.19.0-17-686-pae #1 SMP Debian 4.19.194-2 (2021-06-21) i686 GNU/Linux make[2]: Leaving directory '/build/infernal-1.1.4/hmmer/testsuite' SUBDIR testsuite make[2]: Entering directory '/build/infernal-1.1.4/testsuite' Running Infernal test suite... exercise 1 [ utest/cm_tophits] ... ok. exercise 2 [ itest/mapali] ... ok. exercise 3 [ itest/dup-names] ... ok. exercise 4 [ itest/msa-integrity] ... ok. exercise 5 [ itest/stdin-pipes] ... ok. exercise 6 [ itest/pipeline] ... ok. exercise 7 [ itest/sensitivity] ... ok. exercise 8 [ itest/trunc] ... ok. exercise 9 [ itest/scan-glist] ... ok. exercise 10 [ itest/scan-overlaps] ... ok. exercise 11 [ itest/brute] ... ok. exercise 12 [ bug/i1-vault-sscons] ... ok. exercise 13 [ bug/i2-cmalign-leak] ... ok. exercise 14 [ bug/i11-bld-detach] ... ok. exercise 15 [ bug/i12-aln-outside] ... ok. exercise 16 [ bug/i13-aln-sub] ... ok. exercise 17 [ bug/i14-aln-oa-zero] ... ok. exercise 18 [ bug/i15-aln-bif-imp] ... ok. exercise 19 [ bug/i28-srch-bndcln] ... ok. exercise 20 [ bug/i29-cnv-1p0-nft] ... ok. exercise 21 [ bug/i30-srch-zeroln] ... ok. exercise 22 [ bug/i31-neg-dbsize] ... ok. exercise 23 [ bug/i32-refine-ss] ... ok. exercise 24 [ bug/i33-cmsearch-A] ... ok. exercise 25 [ bug/i34-cmalign-EL] ... ok. exercise 26 [ bug/i36-hbanded-tb] ... ok. exercise 27 [ bug/i37-bandshift] ... ok. exercise 28 [ bug/i38-mapali-noss] ... ok. exercise 29 [ bug/i39-build-O-0bp] ... ok. exercise 30 [ bug/i43-oa-loc-beg] ... ok. exercise 31 [ bug/i44-mapstr] ... ok. exercise 32 [bug/i45-alidisplay-EL] ... ok. exercise 33 [ bug/i47-cmbuild-p7ml] ... ok. exercise 34 [ bug/i49-hmmonly-ovlp] ... ok. exercise 35 [ iss21-cmbuild-rf-pb] ... ok. exercise 36 [ build/help/1] ... ok. exercise 37 [ build/help/2] ... ok. exercise 38 [ build/t] ... ok. exercise 39 [ build/v/o] ... ok. exercise 40 [ build/s/O] ... ok. exercise 41 [ build/zbp/O] ... ok. exercise 42 [ build/4/O] ... ok. exercise 43 [ search/help/1] ... ok. exercise 44 [ search/help/2] ... ok. exercise 45 [ search/t] ... ok. exercise 46 [ search/v] ... ok. exercise 47 [ search/s] ... ok. exercise 48 [ search/4] ... ok. exercise 49 [ search/4F3] ... ok. exercise 50 [ search/zbp] ... ok. exercise 51 [ search/t/A] ... ok. exercise 52 [ search/4/A] ... ok. exercise 53 [ search/zbp/A] ... ok. exercise 54 [ stat/help/1] ... ok. exercise 55 [ stat/t] ... ok. exercise 56 [ stat/v] ... ok. exercise 57 [ stat/s] ... ok. exercise 58 [ stat/z] ... ok. exercise 59 [ stat/tC] ... ok. exercise 60 [ stat/vC] ... ok. exercise 61 [ stat/sC] ... ok. exercise 62 [ stat/zC] ... ok. exercise 63 [ press/tC] ... ok. exercise 64 [ press/vC] ... ok. exercise 65 [ press/sC] ... ok. exercise 66 [ press/zC] ... ok. exercise 67 [ press/4C] ... ok. exercise 68 [ press/5C] ... ok. exercise 69 [ press/se] ... ok. exercise 70 [ scan/help/1] ... ok. exercise 71 [ scan/help/2] ... ok. exercise 72 [ scan/tC] ... ok. exercise 73 [ scan/vC] ... ok. exercise 74 [ scan/sC] ... ok. exercise 75 [ scan/zC] ... ok. exercise 76 [ scan/4C] ... ok. exercise 77 [ scan/5C] ... ok. exercise 78 [ scan/5CF3] ... ok. exercise 79 [ scan/se] ... ok. exercise 80 [ scan/seF3] ... ok. exercise 81 [ emit/help/1] ... ok. exercise 82 [ emit/t] ... ok. exercise 83 [ emit/v] ... ok. exercise 84 [ emit/s] ... ok. exercise 85 [ emit/4] ... ok. exercise 86 [ emit/z] ... ok. exercise 87 [ emit/tC] ... ok. exercise 88 [ emit/vC] ... ok. exercise 89 [ emit/sC] ... ok. exercise 90 [ emit/4C] ... ok. exercise 91 [ emit/zC] ... ok. exercise 92 [ convert/help/1] ... ok. exercise 93 [ convert/t] ... ok. exercise 94 [ convert/v] ... ok. exercise 95 [ convert/s] ... ok. exercise 96 [ convert/4] ... ok. exercise 97 [ convert-emit/t] ... ok. exercise 98 [ convert-emit/v] ... ok. exercise 99 [ convert-emit/s] ... ok. exercise 100 [ convert-emit/4] ... ok. exercise 101 [ convert/t/b] ... ok. exercise 102 [ convert/v/b] ... ok. exercise 103 [ convert/s/b] ... ok. exercise 104 [ convert/4/b] ... ok. exercise 105 [ convert-emit/t/b] ... ok. exercise 106 [ convert-emit/v/b] ... ok. exercise 107 [ convert-emit/s/b] ... ok. exercise 108 [ convert-emit/4/b] ... ok. exercise 109 [ convert/t/1] ... ok. exercise 110 [ convert/v/1] ... ok. exercise 111 [ convert/s/1] ... ok. exercise 112 [ convert/4/1] ... ok. exercise 113 [ convert/t/1back] ... ok. exercise 114 [ convert/v/1back] ... ok. exercise 115 [ convert/s/1back] ... ok. exercise 116 [ convert/4/1back] ... ok. exercise 117 [ convert-emit/t/b] ... ok. exercise 118 [ convert-emit/v/b] ... ok. exercise 119 [ convert-emit/s/b] ... ok. exercise 120 [ convert-emit/4/b] ... ok. exercise 121 [ convertC/t] ... ok. exercise 122 [ convertC/v] ... ok. exercise 123 [ convertC/s] ... ok. exercise 124 [ convertC/4] ... ok. exercise 125 [ convertC-emit/t] ... ok. exercise 126 [ convertC-emit/v] ... ok. exercise 127 [ convertC-emit/s] ... ok. exercise 128 [ convertC-emit/4] ... ok. exercise 129 [ align/help/1] ... ok. exercise 130 [ align/t/1] ... ok. exercise 131 [ align/t/2] ... ok. exercise 132 [ calibrate/help/1] ... ok. exercise 133 [ calibrate/tFC] ... ok. exercise 134 [ calibrate/se] ... ok. exercise 135 [ fetch/4/index] ... ok. exercise 136 [ fetch/4/f] ... ok. exercise 137 [ fetch/4/o] ... ok. exercise 138 [ fetch/4/O] ... ok. exercise 139 [ emit/4/O] ... ok. exercise 140 [ fetch/4C/index] ... ok. exercise 141 [ fetch/4C/f] ... ok. exercise 142 [ fetch/4C/o] ... ok. exercise 143 [ fetch/4C/O] ... ok. exercise 144 [ emit/4C/O] ... ok. exercise 145 [ bandcykmc/trna] ... ok. exercise 146 [ bandcyktrunc/trna] ... ok. exercise 147 [ cp9/trna/1] ... ok. exercise 148 [ cp9/trna/2] ... ok. exercise 149 [ cp9/rp] ... ok. exercise 150 [ sub/trna1] ... ok. exercise 151 [ sub/rp] ... ok. exercise 152 [ sub/trna2] ... ok. All 152 exercises at level <= 1 passed. System information: Fri Jul 2 02:20:38 -12 2021 Linux ionos2-i386 4.19.0-17-686-pae #1 SMP Debian 4.19.194-2 (2021-06-21) i686 GNU/Linux make[2]: Leaving directory '/build/infernal-1.1.4/testsuite' make[1]: Leaving directory '/build/infernal-1.1.4' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install-arch make[1]: Entering directory '/build/infernal-1.1.4' /usr/bin/make install -j10 AM_UPDATE_INFO_DIR=no V=1 prefix=/build/infernal-1.1.4/debian/tmp make[2]: Entering directory '/build/infernal-1.1.4' /usr/bin/install -c -d /build/infernal-1.1.4/debian/tmp/bin /usr/bin/install -c -d /build/infernal-1.1.4/debian/tmp/share/man/man1 /usr/bin/install -c -d /build/infernal-1.1.4/debian/tmp/share/doc/infernal /usr/bin/make -C src install make[3]: Entering directory '/build/infernal-1.1.4/src' for file in cmalign cmbuild cmcalibrate cmconvert cmemit cmfetch cmpress cmscan cmsearch cmstat; do \ /usr/bin/install -c -m 0755 $file /build/infernal-1.1.4/debian/tmp/bin/ ;\ done make[3]: Leaving directory '/build/infernal-1.1.4/src' /usr/bin/make -C documentation install make[3]: Entering directory '/build/infernal-1.1.4/documentation' /usr/bin/make -C man install make[4]: Entering directory '/build/infernal-1.1.4/documentation/man' for file in infernal cmalign cmbuild cmcalibrate cmconvert cmemit cmfetch cmpress cmsearch cmscan cmstat; do \ /usr/bin/install -c -m 0664 $file.man /build/infernal-1.1.4/debian/tmp/share/man/man1/${file}.1 ;\ done make[4]: Leaving directory '/build/infernal-1.1.4/documentation/man' make[3]: Leaving directory '/build/infernal-1.1.4/documentation' make[2]: Leaving directory '/build/infernal-1.1.4' make[1]: Leaving directory '/build/infernal-1.1.4' debian/rules override_dh_auto_install-indep make[1]: Entering directory '/build/infernal-1.1.4' echo "Nothing to do for architecture all binary packages" Nothing to do for architecture all binary packages make[1]: Leaving directory '/build/infernal-1.1.4' debian/rules override_dh_install-arch make[1]: Entering directory '/build/infernal-1.1.4' dh_install -a for bin in `ls /build/infernal-1.1.4/debian/infernal/usr/lib/infernal` ; do \ if [ $bin != cmalign ] ; then \ ln -s cmalign /build/infernal-1.1.4/debian/infernal/usr/bin/$bin ; \ fi ; \ done make[1]: Leaving directory '/build/infernal-1.1.4' dh_install -Ninfernal dh_installdocs dh_installchangelogs debian/rules override_dh_installexamples-arch make[1]: Entering directory '/build/infernal-1.1.4' dh_installexamples -a mkdir -p /build/infernal-1.1.4/debian/infernal/usr/share/doc/infernal/examples mkdir -p /build/infernal-1.1.4/debian/infernal/usr/lib/i386-linux-gnu/infernal/examples/src/ mkdir -p /build/infernal-1.1.4/debian/infernal/usr/lib/i386-linux-gnu/infernal/examples/easel/miniapps/ find ./src -name "*test" -exec cp \{\} /build/infernal-1.1.4/debian/infernal/usr/lib/i386-linux-gnu/infernal/examples/src/ \; cp ./src/itest_brute /build/infernal-1.1.4/debian/infernal/usr/lib/i386-linux-gnu/infernal/examples/src/ cp ./easel/miniapps/esl-reformat /build/infernal-1.1.4/debian/infernal/usr/lib/i386-linux-gnu/infernal/examples/easel/miniapps/ cp ./easel/miniapps/esl-shuffle /build/infernal-1.1.4/debian/infernal/usr/lib/i386-linux-gnu/infernal/examples/easel/miniapps/ cp ./easel/miniapps/esl-sfetch /build/infernal-1.1.4/debian/infernal/usr/lib/i386-linux-gnu/infernal/examples/easel/miniapps/ cd /build/infernal-1.1.4/debian/infernal/usr/share/doc/infernal/examples && ln -s ../../../../lib/i386-linux-gnu/infernal/examples/easel ./easel \ && ln -s ../../../../lib/i386-linux-gnu/infernal/examples/src ./src cp -aR testsuite /build/infernal-1.1.4/debian/infernal/usr/share/doc/infernal/examples/ rm -f /build/infernal-1.1.4/debian/infernal/usr/share/doc/infernal/examples/testsuite/*.tbl cp ./easel/devkit/sqc /build/infernal-1.1.4/debian/infernal/usr/share/doc/infernal/examples/ make[1]: Leaving directory '/build/infernal-1.1.4' dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/infernal-1.1.4' dh_compress -X.pdf make[1]: Leaving directory '/build/infernal-1.1.4' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package infernal-doc: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'infernal-dbgsym' in '../infernal-dbgsym_1.1.4-1_i386.deb'. dpkg-deb: building package 'infernal-doc' in '../infernal-doc_1.1.4-1_all.deb'. dpkg-deb: building package 'infernal' in '../infernal_1.1.4-1_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../infernal_1.1.4-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/14689 and its subdirectories I: Current time: Fri Jul 2 02:22:37 -12 2021 I: pbuilder-time-stamp: 1625235757 Fri Jul 2 14:22:38 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Fri Jul 2 14:22:38 UTC 2021 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Fri Jul 2 14:37:43 UTC 2021 I: Deleting $TMPDIR on ionos16-i386.debian.net. Fri Jul 2 14:37:43 UTC 2021 I: infernal_1.1.4-1_i386.changes: Format: 1.8 Date: Fri, 11 Dec 2020 18:49:26 +0100 Source: infernal Binary: infernal infernal-dbgsym infernal-doc Architecture: i386 all Version: 1.1.4-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: infernal - inference of RNA secondary structural alignments infernal-doc - inference of RNA secondary structural alignments – documentation Closes: 976550 Changes: infernal (1.1.4-1) unstable; urgency=medium . * Enable Architecture: all builds on arm4 Closes: #976550 * New upstream version * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Remove trailing whitespace in debian/rules (routine-update) * Rules-Requires-Root: no (routine-update) * No tab in license text (routine-update) Checksums-Sha1: 540ccf16c88b53271d950ed0ec66973b7ff89fe3 26013136 infernal-dbgsym_1.1.4-1_i386.deb 52880e3300aa095844dc0f38b073898ca9c7c3b9 897416 infernal-doc_1.1.4-1_all.deb 29650fbaa723891177714bc99bf26bac949dcaa5 5588 infernal_1.1.4-1_i386.buildinfo 3b36d982623d9cce7425531af521b59273a27983 5572792 infernal_1.1.4-1_i386.deb Checksums-Sha256: dff6b93ae4f5df282d46892e7d156220dc3504c71c71a27d52a6c280a8d45c7c 26013136 infernal-dbgsym_1.1.4-1_i386.deb 6f59072412c2dc459c1b95f99e8403d81a0ba900f2368595ecbd3e670c9e9677 897416 infernal-doc_1.1.4-1_all.deb 59cae044fe6c93670c936c65ab40914cbec2b24aea888833271bf013c5c0648a 5588 infernal_1.1.4-1_i386.buildinfo 02eec53314d7188bdca877f0a2468a94879d6ab5efd53b815ac403ec61b2d718 5572792 infernal_1.1.4-1_i386.deb Files: 9c1ed34aec699c97e618e837c16945ef 26013136 debug optional infernal-dbgsym_1.1.4-1_i386.deb 5ea7bb317fc0caf822f1e60be5138c28 897416 doc optional infernal-doc_1.1.4-1_all.deb 31f120d4e982c11906031f61b058123f 5588 science optional infernal_1.1.4-1_i386.buildinfo 655327c368411d8886f4e346f68bdba1 5572792 science optional infernal_1.1.4-1_i386.deb Fri Jul 2 14:37:54 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.5rmT8PCLap/infernal_1.1.4-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.5rmT8PCLap/infernal_1.1.4-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.5rmT8PCLap/infernal_1.1.4-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.5rmT8PCLap/b1/infernal_1.1.4-1_i386.changes /srv/reproducible-results/rbuild-debian/tmp.5rmT8PCLap/b2/infernal_1.1.4-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.624s) 0.624s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.380s) 0.380s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Fri Jul 2 14:38:09 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Fri Jul 2 14:38:09 UTC 2021 I: infernal from bullseye built successfully and reproducibly on i386. Fri Jul 2 14:38:11 UTC 2021 I: Submitting .buildinfo files to external archives: Fri Jul 2 14:38:11 UTC 2021 I: Submitting 8.0K b1/infernal_1.1.4-1_i386.buildinfo.asc Fri Jul 2 14:38:12 UTC 2021 I: Submitting 8.0K b2/infernal_1.1.4-1_i386.buildinfo.asc Fri Jul 2 14:38:13 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jul 2 14:38:13 UTC 2021 I: Done submitting .buildinfo files. Fri Jul 2 14:38:13 UTC 2021 I: Removing signed infernal_1.1.4-1_i386.buildinfo.asc files: removed './b1/infernal_1.1.4-1_i386.buildinfo.asc' removed './b2/infernal_1.1.4-1_i386.buildinfo.asc'