Wed Jun 23 18:11:06 UTC 2021 I: starting to build hyphy/bullseye/i386 on jenkins on '2021-06-23 18:11' Wed Jun 23 18:11:06 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_11/11116/console.log Wed Jun 23 18:11:06 UTC 2021 I: Downloading source for bullseye/hyphy=2.5.28+dfsg-3 --2021-06-23 18:11:06-- http://cdn-fastly.deb.debian.org/debian/pool/main/h/hyphy/hyphy_2.5.28+dfsg-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2245 (2.2K) Saving to: ‘hyphy_2.5.28+dfsg-3.dsc’ 0K .. 100% 13.5M=0s 2021-06-23 18:11:06 (13.5 MB/s) - ‘hyphy_2.5.28+dfsg-3.dsc’ saved [2245/2245] Wed Jun 23 18:11:06 UTC 2021 I: hyphy_2.5.28+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: hyphy Binary: hyphy-pt, hyphy-mpi, hyphy-common Architecture: any all Version: 2.5.28+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier , Nilesh Patra Homepage: https://hyphy.org/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/hyphy Vcs-Git: https://salsa.debian.org/med-team/hyphy.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, mpi-default-dev, libcurl4-gnutls-dev | libcurl4-dev, libssl-dev, libsqlite3-dev, pkg-config, chrpath Package-List: hyphy-common deb science optional arch=all hyphy-mpi deb science optional arch=any hyphy-pt deb science optional arch=any Checksums-Sha1: 40c4dc1d83c3d13a94099e7cb77049cb4f93a16c 2458752 hyphy_2.5.28+dfsg.orig.tar.xz a1f4aff9ac5c40ea74edf523789d3340dec90cab 17328 hyphy_2.5.28+dfsg-3.debian.tar.xz Checksums-Sha256: bc8bb5039ac1d1eff5bdbe980114e8d64a622bd577a3d74f33e0195dbed63bb3 2458752 hyphy_2.5.28+dfsg.orig.tar.xz 85e2272de56508804b4a26633b04354ebf012eb83026d154b7a7444332c3887a 17328 hyphy_2.5.28+dfsg-3.debian.tar.xz Files: de40c63120332d9e45c17ed791afd478 2458752 hyphy_2.5.28+dfsg.orig.tar.xz 969f8646fc01df5ec1f5400be59237ef 17328 hyphy_2.5.28+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmBRwMMACgkQeTz2fo8N EdowLA//R7MsNnuX6vddoaEAGMhzB2vuK0N8JRwegeotieXDV6EDL9WfnRNddmPP Kvoo0gH9WxuB8L1fyu2t+mENOzBW7eeTBNq2qdkkha+mvk97/xyD5GjlYfM5sx0s /vVYTBi4Pp8iNGEXQ+9qT9uFRYTvbIiw8etUn/XCAr0cu+qv0NcvJZu/qk81Ll4Q VevoN3SG4sR19ugo+e1NreVXFuN4sEanmYXoclBiRwVz1UNnjlb1pwWP7c11VvpG iWpFzBPEzZCiNFwyc5w3bz1e+V+U3PnjPhFUsFkCgq+bo/WT+S7EX0+NbMuIj+3J wnJ7KOMgK1/tyVSyV7tLH2Vy9IscF+IZy54NQyGjUsahC24uS2XmGBJwiSKoweg8 rjxtknBIkVMON50BYPk23InGY+Yu8TiLjsw1xFhOpHwp9J/jaP0K2VkSh+GRYQiM mMgb6R69mdwbmTqUGfJsFvE+qR4Ifq9/SDmrjsln86MwpGtnUVuQkqKn+d6CJTHh Zsr/UIzCNQ2ON0QDHeUtu5NDz8B2ROUf85ImVx5NS9fGvDjojMt+NjZ7oidz+MDf ekAnrjov7Nb+l3iVSaEIsDOpVoiy7rhKAerSmQIklaMwUueIl0tZlD8eD4jpSq2I RUFcESt2WMrqEXDoh8vdkj/kYFPHTPze1CQtOU+tU+j/FixRfs8= =sTzF -----END PGP SIGNATURE----- Wed Jun 23 18:11:06 UTC 2021 I: Checking whether the package is not for us Wed Jun 23 18:11:06 UTC 2021 I: Starting 1st build on remote node ionos2-i386.debian.net. Wed Jun 23 18:11:06 UTC 2021 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Wed Jun 23 18:22:57 UTC 2021 I: Deleting $TMPDIR on ionos2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jun 23 06:11:11 -12 2021 I: pbuilder-time-stamp: 1624471871 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [hyphy_2.5.28+dfsg-3.dsc] I: copying [./hyphy_2.5.28+dfsg.orig.tar.xz] I: copying [./hyphy_2.5.28+dfsg-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.gQIxhFu7/trustedkeys.kbx': General error gpgv: Signature made Tue Mar 16 20:41:39 2021 -12 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./hyphy_2.5.28+dfsg-3.dsc dpkg-source: info: extracting hyphy in hyphy-2.5.28+dfsg dpkg-source: info: unpacking hyphy_2.5.28+dfsg.orig.tar.xz dpkg-source: info: unpacking hyphy_2.5.28+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_sqlite.patch dpkg-source: info: applying rm_arch_specific_flags.patch dpkg-source: info: applying spelling I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/10130/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=10' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='9da37faf8f9744d99afd08bc60e46ba7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='10130' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.pVcwzHrhBV/pbuilderrc_SC8k --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.pVcwzHrhBV/b1 --logfile b1/build.log hyphy_2.5.28+dfsg-3.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos2-i386 4.19.0-17-686-pae #1 SMP Debian 4.19.194-1 (2021-06-10) i686 GNU/Linux I: ls -l /bin total 5856 -rwxr-xr-x 1 root root 1367848 Jun 21 14:25 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 7 02:38 more -rwsr-xr-x 1 root root 50720 Feb 7 02:38 mount -rwxr-xr-x 1 root root 13856 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:25 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jun 21 22:20 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Feb 7 02:38 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 21:55 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 7 02:38 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/10130/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, mpi-default-dev, libcurl4-gnutls-dev | libcurl4-dev, libssl-dev, libsqlite3-dev, pkg-config, chrpath dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on mpi-default-dev; however: Package mpi-default-dev is not installed. pbuilder-satisfydepends-dummy depends on libcurl4-gnutls-dev | libcurl4-dev; however: Package libcurl4-gnutls-dev is not installed. Package libcurl4-dev is not installed. pbuilder-satisfydepends-dummy depends on libssl-dev; however: Package libssl-dev is not installed. pbuilder-satisfydepends-dummy depends on libsqlite3-dev; however: Package libsqlite3-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} chrpath{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran-10{a} groff-base{a} ibverbs-providers{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libbsd0{a} libcbor0{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libedit2{a} libelf1{a} libevent-2.1-7{a} libevent-core-2.1-7{a} libevent-dev{a} libevent-extra-2.1-7{a} libevent-openssl-2.1-7{a} libevent-pthreads-2.1-7{a} libexpat1{a} libfabric1{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgfortran-10-dev{a} libgfortran5{a} libglib2.0-0{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libibverbs-dev{a} libibverbs1{a} libicu67{a} libjs-jquery{a} libjs-jquery-ui{a} libjsoncpp24{a} libldap-2.4-2{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libncurses6{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpmix-dev{a} libpmix2{a} libprocps8{a} libpsl5{a} libpsm-infinipath1{a} librdmacm1{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsqlite3-dev{a} libssh2-1{a} libssl-dev{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libuv1{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} m4{a} man-db{a} mpi-default-dev{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} pkg-config{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libcoarrays-openmpi-dev libglib2.0-data libgpm2 libldap-common libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix shared-mime-info wget xauth xdg-user-dirs 0 packages upgraded, 108 newly installed, 0 to remove and 0 not upgraded. Need to get 59.2 MB of archives. After unpacking 217 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 libncurses6 i386 6.2+20201114-2 [110 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libprocps8 i386 2:3.3.17-5 [64.2 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 procps i386 2:3.3.17-5 [501 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 libmd0 i386 1.0.3-3 [28.9 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 libbsd0 i386 0.11.3-1 [111 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 libedit2 i386 3.1-20191231-2+b1 [101 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 libcbor0 i386 0.5.0+dfsg-2 [26.2 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 libfido2-1 i386 1.6.0-2 [59.9 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 openssh-client i386 1:8.4p1-5 [991 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 chrpath i386 0.16-2+b1 [17.5 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 cmake-data all 3.18.4-2 [1725 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-6 [8776 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 libarchive13 i386 3.4.3-2+b1 [384 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 libsasl2-modules-db i386 2.1.27+dfsg-2.1 [70.0 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 libsasl2-2 i386 2.1.27+dfsg-2.1 [110 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 libldap-2.4-2 i386 2.4.57+dfsg-3 [244 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 libnghttp2-14 i386 1.43.0-1 [85.7 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 libpsl5 i386 0.21.0-1.2 [57.9 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 libssh2-1 i386 1.9.0-2 [164 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libcurl4 i386 7.74.0-1.2 [372 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2 [98.8 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 libjsoncpp24 i386 1.9.4-4 [86.1 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 librhash0 i386 1.4.1-2 [144 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 libuv1 i386 1.40.0-1 [139 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 cmake i386 3.18.4-2 [7029 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 52 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 53 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 54 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 57 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 58 http://deb.debian.org/debian bullseye/main i386 libgfortran5 i386 10.2.1-6 [643 kB] Get: 59 http://deb.debian.org/debian bullseye/main i386 libgfortran-10-dev i386 10.2.1-6 [705 kB] Get: 60 http://deb.debian.org/debian bullseye/main i386 gfortran-10 i386 10.2.1-6 [9642 kB] Get: 61 http://deb.debian.org/debian bullseye/main i386 libnl-3-200 i386 3.4.0-1+b1 [66.4 kB] Get: 62 http://deb.debian.org/debian bullseye/main i386 libnl-route-3-200 i386 3.4.0-1+b1 [168 kB] Get: 63 http://deb.debian.org/debian bullseye/main i386 libibverbs1 i386 33.2-1 [64.6 kB] Get: 64 http://deb.debian.org/debian bullseye/main i386 ibverbs-providers i386 33.2-1 [275 kB] Get: 65 http://deb.debian.org/debian bullseye/main i386 libcurl3-gnutls i386 7.74.0-1.2 [367 kB] Get: 66 http://deb.debian.org/debian bullseye/main i386 libcurl4-gnutls-dev i386 7.74.0-1.2 [471 kB] Get: 67 http://deb.debian.org/debian bullseye/main i386 libevent-2.1-7 i386 2.1.12-stable-1 [203 kB] Get: 68 http://deb.debian.org/debian bullseye/main i386 libevent-core-2.1-7 i386 2.1.12-stable-1 [148 kB] Get: 69 http://deb.debian.org/debian bullseye/main i386 libevent-extra-2.1-7 i386 2.1.12-stable-1 [116 kB] Get: 70 http://deb.debian.org/debian bullseye/main i386 libevent-pthreads-2.1-7 i386 2.1.12-stable-1 [57.3 kB] Get: 71 http://deb.debian.org/debian bullseye/main i386 libevent-openssl-2.1-7 i386 2.1.12-stable-1 [64.9 kB] Get: 72 http://deb.debian.org/debian bullseye/main i386 libevent-dev i386 2.1.12-stable-1 [332 kB] Get: 73 http://deb.debian.org/debian bullseye/main i386 libpsm-infinipath1 i386 3.3+20.604758e7-6.1 [178 kB] Get: 74 http://deb.debian.org/debian bullseye/main i386 librdmacm1 i386 33.2-1 [75.2 kB] Get: 75 http://deb.debian.org/debian bullseye/main i386 libfabric1 i386 1.11.0-2 [518 kB] Get: 76 http://deb.debian.org/debian bullseye/main i386 libglib2.0-0 i386 2.66.8-1 [1437 kB] Get: 77 http://deb.debian.org/debian bullseye/main i386 libhwloc15 i386 2.4.1+dfsg-1 [164 kB] Get: 78 http://deb.debian.org/debian bullseye/main i386 libnuma1 i386 2.0.12-1+b1 [27.9 kB] Get: 79 http://deb.debian.org/debian bullseye/main i386 libnuma-dev i386 2.0.12-1+b1 [41.2 kB] Get: 80 http://deb.debian.org/debian bullseye/main i386 libltdl7 i386 2.4.6-15 [392 kB] Get: 81 http://deb.debian.org/debian bullseye/main i386 libltdl-dev i386 2.4.6-15 [164 kB] Get: 82 http://deb.debian.org/debian bullseye/main i386 libhwloc-dev i386 2.4.1+dfsg-1 [250 kB] Get: 83 http://deb.debian.org/debian bullseye/main i386 libpciaccess0 i386 0.16-1 [55.7 kB] Get: 84 http://deb.debian.org/debian bullseye/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 85 http://deb.debian.org/debian bullseye/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 86 http://deb.debian.org/debian bullseye/main i386 libxcb1 i386 1.14-3 [144 kB] Get: 87 http://deb.debian.org/debian bullseye/main i386 libx11-data all 2:1.7.1-1 [310 kB] Get: 88 http://deb.debian.org/debian bullseye/main i386 libx11-6 i386 2:1.7.1-1 [796 kB] Get: 89 http://deb.debian.org/debian bullseye/main i386 libxext6 i386 2:1.3.3-1.1 [55.2 kB] Get: 90 http://deb.debian.org/debian bullseye/main i386 libxnvctrl0 i386 460.73.01-1 [26.8 kB] Get: 91 http://deb.debian.org/debian bullseye/main i386 ocl-icd-libopencl1 i386 2.2.14-2 [45.0 kB] Get: 92 http://deb.debian.org/debian bullseye/main i386 libhwloc-plugins i386 2.4.1+dfsg-1 [22.0 kB] Get: 93 http://deb.debian.org/debian bullseye/main i386 libnl-3-dev i386 3.4.0-1+b1 [107 kB] Get: 94 http://deb.debian.org/debian bullseye/main i386 libnl-route-3-dev i386 3.4.0-1+b1 [192 kB] Get: 95 http://deb.debian.org/debian bullseye/main i386 libibverbs-dev i386 33.2-1 [521 kB] Get: 96 http://deb.debian.org/debian bullseye/main i386 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 97 http://deb.debian.org/debian bullseye/main i386 libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB] Get: 98 http://deb.debian.org/debian bullseye/main i386 libpmix2 i386 4.0.0-4 [582 kB] Get: 99 http://deb.debian.org/debian bullseye/main i386 libopenmpi3 i386 4.1.0-10 [2144 kB] Get: 100 http://deb.debian.org/debian bullseye/main i386 openmpi-common all 4.1.0-10 [179 kB] Get: 101 http://deb.debian.org/debian bullseye/main i386 libpmix-dev i386 4.0.0-4 [717 kB] Get: 102 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] Get: 103 http://deb.debian.org/debian bullseye/main i386 openmpi-bin i386 4.1.0-10 [209 kB] Get: 104 http://deb.debian.org/debian bullseye/main i386 libopenmpi-dev i386 4.1.0-10 [1142 kB] Get: 105 http://deb.debian.org/debian bullseye/main i386 libsqlite3-dev i386 3.34.1-3 [1001 kB] Get: 106 http://deb.debian.org/debian bullseye/main i386 libssl-dev i386 1.1.1k-1 [1841 kB] Get: 107 http://deb.debian.org/debian bullseye/main i386 mpi-default-dev i386 1.13 [5476 B] Get: 108 http://deb.debian.org/debian bullseye/main i386 pkg-config i386 0.29.2-1 [66.3 kB] Fetched 59.2 MB in 15s (4022 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-7_i386.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../001-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../003-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libncurses6:i386. Preparing to unpack .../005-libncurses6_6.2+20201114-2_i386.deb ... Unpacking libncurses6:i386 (6.2+20201114-2) ... Selecting previously unselected package libprocps8:i386. Preparing to unpack .../006-libprocps8_2%3a3.3.17-5_i386.deb ... Unpacking libprocps8:i386 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../007-procps_2%3a3.3.17-5_i386.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../008-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../009-libmagic-mgc_1%3a5.39-3_i386.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../010-libmagic1_1%3a5.39-3_i386.deb ... Unpacking libmagic1:i386 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../011-file_1%3a5.39-3_i386.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../012-gettext-base_0.21-4_i386.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libmd0:i386. Preparing to unpack .../013-libmd0_1.0.3-3_i386.deb ... Unpacking libmd0:i386 (1.0.3-3) ... Selecting previously unselected package libbsd0:i386. Preparing to unpack .../014-libbsd0_0.11.3-1_i386.deb ... Unpacking libbsd0:i386 (0.11.3-1) ... Selecting previously unselected package libedit2:i386. Preparing to unpack .../015-libedit2_3.1-20191231-2+b1_i386.deb ... Unpacking libedit2:i386 (3.1-20191231-2+b1) ... Selecting previously unselected package libcbor0:i386. Preparing to unpack .../016-libcbor0_0.5.0+dfsg-2_i386.deb ... Unpacking libcbor0:i386 (0.5.0+dfsg-2) ... Selecting previously unselected package libfido2-1:i386. Preparing to unpack .../017-libfido2-1_1.6.0-2_i386.deb ... Unpacking libfido2-1:i386 (1.6.0-2) ... Selecting previously unselected package openssh-client. Preparing to unpack .../018-openssh-client_1%3a8.4p1-5_i386.deb ... Unpacking openssh-client (1:8.4p1-5) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../019-libsigsegv2_2.13-1_i386.deb ... Unpacking libsigsegv2:i386 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../020-m4_1.4.18-5_i386.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../021-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../022-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../023-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../024-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package chrpath. Preparing to unpack .../025-chrpath_0.16-2+b1_i386.deb ... Unpacking chrpath (0.16-2+b1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../026-cmake-data_3.18.4-2_all.deb ... Unpacking cmake-data (3.18.4-2) ... Selecting previously unselected package libicu67:i386. Preparing to unpack .../027-libicu67_67.1-6_i386.deb ... Unpacking libicu67:i386 (67.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../028-libxml2_2.9.10+dfsg-6.7_i386.deb ... Unpacking libxml2:i386 (2.9.10+dfsg-6.7) ... Selecting previously unselected package libarchive13:i386. Preparing to unpack .../029-libarchive13_3.4.3-2+b1_i386.deb ... Unpacking libarchive13:i386 (3.4.3-2+b1) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../030-libbrotli1_1.0.9-2+b2_i386.deb ... Unpacking libbrotli1:i386 (1.0.9-2+b2) ... Selecting previously unselected package libsasl2-modules-db:i386. Preparing to unpack .../031-libsasl2-modules-db_2.1.27+dfsg-2.1_i386.deb ... Unpacking libsasl2-modules-db:i386 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:i386. Preparing to unpack .../032-libsasl2-2_2.1.27+dfsg-2.1_i386.deb ... Unpacking libsasl2-2:i386 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:i386. Preparing to unpack .../033-libldap-2.4-2_2.4.57+dfsg-3_i386.deb ... Unpacking libldap-2.4-2:i386 (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:i386. Preparing to unpack .../034-libnghttp2-14_1.43.0-1_i386.deb ... Unpacking libnghttp2-14:i386 (1.43.0-1) ... Selecting previously unselected package libpsl5:i386. Preparing to unpack .../035-libpsl5_0.21.0-1.2_i386.deb ... Unpacking libpsl5:i386 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:i386. Preparing to unpack .../036-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_i386.deb ... Unpacking librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:i386. Preparing to unpack .../037-libssh2-1_1.9.0-2_i386.deb ... Unpacking libssh2-1:i386 (1.9.0-2) ... Selecting previously unselected package libcurl4:i386. Preparing to unpack .../038-libcurl4_7.74.0-1.2_i386.deb ... Unpacking libcurl4:i386 (7.74.0-1.2) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../039-libexpat1_2.2.10-2_i386.deb ... Unpacking libexpat1:i386 (2.2.10-2) ... Selecting previously unselected package libjsoncpp24:i386. Preparing to unpack .../040-libjsoncpp24_1.9.4-4_i386.deb ... Unpacking libjsoncpp24:i386 (1.9.4-4) ... Selecting previously unselected package librhash0:i386. Preparing to unpack .../041-librhash0_1.4.1-2_i386.deb ... Unpacking librhash0:i386 (1.4.1-2) ... Selecting previously unselected package libuv1:i386. Preparing to unpack .../042-libuv1_1.40.0-1_i386.deb ... Unpacking libuv1:i386 (1.40.0-1) ... Selecting previously unselected package cmake. Preparing to unpack .../043-cmake_3.18.4-2_i386.deb ... Unpacking cmake (3.18.4-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../044-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../045-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../046-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../047-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../048-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../049-libfile-stripnondeterminism-perl_1.11.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.11.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../050-dh-strip-nondeterminism_1.11.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.11.0-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../051-libelf1_0.183-1_i386.deb ... Unpacking libelf1:i386 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../052-dwz_0.13+20210201-1_i386.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package gettext. Preparing to unpack .../053-gettext_0.21-4_i386.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../054-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../055-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../056-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../057-libgfortran5_10.2.1-6_i386.deb ... Unpacking libgfortran5:i386 (10.2.1-6) ... Selecting previously unselected package libgfortran-10-dev:i386. Preparing to unpack .../058-libgfortran-10-dev_10.2.1-6_i386.deb ... Unpacking libgfortran-10-dev:i386 (10.2.1-6) ... Selecting previously unselected package gfortran-10. Preparing to unpack .../059-gfortran-10_10.2.1-6_i386.deb ... Unpacking gfortran-10 (10.2.1-6) ... Selecting previously unselected package libnl-3-200:i386. Preparing to unpack .../060-libnl-3-200_3.4.0-1+b1_i386.deb ... Unpacking libnl-3-200:i386 (3.4.0-1+b1) ... Selecting previously unselected package libnl-route-3-200:i386. Preparing to unpack .../061-libnl-route-3-200_3.4.0-1+b1_i386.deb ... Unpacking libnl-route-3-200:i386 (3.4.0-1+b1) ... Selecting previously unselected package libibverbs1:i386. Preparing to unpack .../062-libibverbs1_33.2-1_i386.deb ... Unpacking libibverbs1:i386 (33.2-1) ... Selecting previously unselected package ibverbs-providers:i386. Preparing to unpack .../063-ibverbs-providers_33.2-1_i386.deb ... Unpacking ibverbs-providers:i386 (33.2-1) ... Selecting previously unselected package libcurl3-gnutls:i386. Preparing to unpack .../064-libcurl3-gnutls_7.74.0-1.2_i386.deb ... Unpacking libcurl3-gnutls:i386 (7.74.0-1.2) ... Selecting previously unselected package libcurl4-gnutls-dev:i386. Preparing to unpack .../065-libcurl4-gnutls-dev_7.74.0-1.2_i386.deb ... Unpacking libcurl4-gnutls-dev:i386 (7.74.0-1.2) ... Selecting previously unselected package libevent-2.1-7:i386. Preparing to unpack .../066-libevent-2.1-7_2.1.12-stable-1_i386.deb ... Unpacking libevent-2.1-7:i386 (2.1.12-stable-1) ... Selecting previously unselected package libevent-core-2.1-7:i386. Preparing to unpack .../067-libevent-core-2.1-7_2.1.12-stable-1_i386.deb ... Unpacking libevent-core-2.1-7:i386 (2.1.12-stable-1) ... Selecting previously unselected package libevent-extra-2.1-7:i386. Preparing to unpack .../068-libevent-extra-2.1-7_2.1.12-stable-1_i386.deb ... Unpacking libevent-extra-2.1-7:i386 (2.1.12-stable-1) ... 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Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libibverbs1:i386 (33.2-1) ... Setting up ibverbs-providers:i386 (33.2-1) ... Setting up openssh-client (1:8.4p1-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxext6:i386 (2:1.3.3-1.1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxnvctrl0:i386 (460.73.01-1) ... Setting up dh-autoreconf (20) ... Setting up libnl-route-3-dev:i386 (3.4.0-1+b1) ... Setting up libltdl-dev:i386 (2.4.6-15) ... Setting up cmake (3.18.4-2) ... Setting up libhwloc-dev:i386 (2.4.1+dfsg-1) ... Setting up librdmacm1:i386 (33.2-1) ... Setting up debhelper (13.3.4) ... Setting up libibverbs-dev:i386 (33.2-1) ... Setting up libhwloc-plugins:i386 (2.4.1+dfsg-1) ... Setting up libfabric1 (1.11.0-2) ... Setting up libpmix2:i386 (4.0.0-4) ... Setting up libopenmpi3:i386 (4.1.0-10) ... Setting up libpmix-dev:i386 (4.0.0-4) ... Setting up openmpi-bin (4.1.0-10) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up libopenmpi-dev:i386 (4.1.0-10) ... update-alternatives: using /usr/lib/i386-linux-gnu/openmpi/include to provide /usr/include/i386-linux-gnu/mpi (mpi-i386-linux-gnu) in auto mode Setting up mpi-default-dev (1.13) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/hyphy-2.5.28+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package hyphy dpkg-buildpackage: info: source version 2.5.28+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --buildsystem=cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/build/hyphy-2.5.28+dfsg' dh_auto_clean make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg' dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/hyphy-2.5.28+dfsg' dh_auto_configure -- -DINSTALL_PREFIX=/usr -DNOAVX=ON -DNOSSE3=ON cd obj-i686-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DINSTALL_PREFIX=/usr -DNOAVX=ON -DNOSSE3=ON .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Set compiler flags to -fsigned-char -O3 -std=c++14 -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found CURL: /usr/lib/i386-linux-gnu/libcurl.so (found version "7.74.0") -- Found PkgConfig: /usr/bin/pkg-config (found version "0.29.2") -- Checking for module 'sqlite3' -- Found sqlite3, version 3.34.1 -- Found SQLITE3: /usr/lib/i386-linux-gnu/libsqlite3.so Node not installed; API documentation will not be generated -- Found MPI_C: /usr/lib/i386-linux-gnu/openmpi/lib/libmpi.so (found version "3.1") -- Found MPI_CXX: /usr/lib/i386-linux-gnu/openmpi/lib/libmpi_cxx.so (found version "3.1") -- Found MPI: TRUE (found version "3.1") -fsigned-char -O3 -std=c++14 -pthread -fopenmp -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR INSTALL_PREFIX -- Build files have been written to: /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg' debian/rules override_dh_auto_build make[1]: Entering directory '/build/hyphy-2.5.28+dfsg' # convert a few ISO-8859-1 files to address national-encoding set -e \ ; for file in res/TemplateBatchFiles/PARRIS.bf res/TemplateBatchFiles/TemplateModels/MEC.mdl res/TemplateBatchFiles/TemplateModels/models.lst \ ; do iconv -f ISO-8859-1 -t UTF-8 < ${file} > "${file}.new" \ ; mv "${file}.new" "${file}" \ ; done dh_auto_build -- MP MPI cd obj-i686-linux-gnu && make -j10 "INSTALL=install --strip-program=true" MP MPI VERBOSE=1 make[2]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/hyphy-2.5.28+dfsg -B/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 MP make[3]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/hyphy-2.5.28+dfsg -B/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles 20 make -f CMakeFiles/Makefile2 CMakeFiles/MP.dir/all make[4]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' make -f CMakeFiles/hyphy.dir/build.make CMakeFiles/hyphy.dir/depend make[5]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' cd /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hyphy-2.5.28+dfsg /build/hyphy-2.5.28+dfsg /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles/hyphy.dir/DependInfo.cmake --color= Dependee "/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles/hyphy.dir/DependInfo.cmake" is newer than depender "/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles/hyphy.dir/depend.internal". Dependee "/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles/hyphy.dir/depend.internal". 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Building CXX object CMakeFiles/hyphy.dir/src/core/trie_iterator.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/hyphy.dir/src/core/trie_iterator.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/trie_iterator.cpp [ 80%] Building CXX object CMakeFiles/hyphy.dir/src/core/variable.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ 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-I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/hyphy.dir/src/core/variablecontainer.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/variablecontainer.cpp [ 80%] Building CXX object CMakeFiles/hyphy.dir/src/core/vector.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/hyphy.dir/src/core/vector.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/vector.cpp [ 85%] Building CXX object CMakeFiles/hyphy.dir/src/new/bayesgraph.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -g -fopenmp -Weffc++ -Wextra -Wall -o CMakeFiles/hyphy.dir/src/new/bayesgraph.cpp.o -c /build/hyphy-2.5.28+dfsg/src/new/bayesgraph.cpp [ 85%] Building CXX object CMakeFiles/hyphy.dir/src/new/bayesgraph2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -g -fopenmp -Weffc++ -Wextra -Wall -o CMakeFiles/hyphy.dir/src/new/bayesgraph2.cpp.o -c /build/hyphy-2.5.28+dfsg/src/new/bayesgraph2.cpp [ 85%] Building CXX object CMakeFiles/hyphy.dir/src/new/bgm.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -g -fopenmp -Weffc++ -Wextra -Wall -o CMakeFiles/hyphy.dir/src/new/bgm.cpp.o -c /build/hyphy-2.5.28+dfsg/src/new/bgm.cpp [ 85%] Building CXX object CMakeFiles/hyphy.dir/src/new/scfg.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -g -fopenmp -Weffc++ -Wextra -Wall -o CMakeFiles/hyphy.dir/src/new/scfg.cpp.o -c /build/hyphy-2.5.28+dfsg/src/new/scfg.cpp [ 90%] Building CXX object CMakeFiles/hyphy.dir/src/new/bgm2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -g -fopenmp -Weffc++ -Wextra -Wall -o CMakeFiles/hyphy.dir/src/new/bgm2.cpp.o -c /build/hyphy-2.5.28+dfsg/src/new/bgm2.cpp [ 90%] Building CXX object CMakeFiles/hyphy.dir/src/utils/hyphyunixutils.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -g -fopenmp -o CMakeFiles/hyphy.dir/src/utils/hyphyunixutils.cpp.o -c /build/hyphy-2.5.28+dfsg/src/utils/hyphyunixutils.cpp [ 95%] Building CXX object CMakeFiles/hyphy.dir/src/contrib/mersenne_twister.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -g -fopenmp -o CMakeFiles/hyphy.dir/src/contrib/mersenne_twister.cpp.o -c /build/hyphy-2.5.28+dfsg/src/contrib/mersenne_twister.cpp [ 95%] Building CXX object CMakeFiles/hyphy.dir/src/contrib/regex.cpp.o [ 95%] Building CXX object CMakeFiles/hyphy.dir/src/mains/unix.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -g -fopenmp -o CMakeFiles/hyphy.dir/src/contrib/regex.cpp.o -c /build/hyphy-2.5.28+dfsg/src/contrib/regex.cpp /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__MP2__ -D__MP__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -g -fopenmp -o CMakeFiles/hyphy.dir/src/mains/unix.cpp.o -c /build/hyphy-2.5.28+dfsg/src/mains/unix.cpp [100%] Linking CXX executable hyphy /usr/bin/cmake -E cmake_link_script CMakeFiles/hyphy.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -fsigned-char -O3 -std=c++14 -g CMakeFiles/hyphy.dir/src/core/_hyExecutionContext.cpp.o CMakeFiles/hyphy.dir/src/core/alignment.cpp.o CMakeFiles/hyphy.dir/src/core/associative_list.cpp.o CMakeFiles/hyphy.dir/src/core/avllist.cpp.o CMakeFiles/hyphy.dir/src/core/avllistx.cpp.o CMakeFiles/hyphy.dir/src/core/avllistx_iterator.cpp.o CMakeFiles/hyphy.dir/src/core/avllistxl.cpp.o CMakeFiles/hyphy.dir/src/core/avllistxl_iterator.cpp.o CMakeFiles/hyphy.dir/src/core/baseobj.cpp.o CMakeFiles/hyphy.dir/src/core/batchlan.cpp.o CMakeFiles/hyphy.dir/src/core/batchlan2.cpp.o CMakeFiles/hyphy.dir/src/core/batchlanhelpers.cpp.o CMakeFiles/hyphy.dir/src/core/batchlanruntime.cpp.o CMakeFiles/hyphy.dir/src/core/calcnode.cpp.o CMakeFiles/hyphy.dir/src/core/category.cpp.o CMakeFiles/hyphy.dir/src/core/constant.cpp.o CMakeFiles/hyphy.dir/src/core/dataset.cpp.o CMakeFiles/hyphy.dir/src/core/dataset_filter.cpp.o CMakeFiles/hyphy.dir/src/core/dataset_filter_numeric.cpp.o CMakeFiles/hyphy.dir/src/core/fisher_exact.cpp.o CMakeFiles/hyphy.dir/src/core/formula.cpp.o CMakeFiles/hyphy.dir/src/core/formula_parsing_context.cpp.o CMakeFiles/hyphy.dir/src/core/fstring.cpp.o CMakeFiles/hyphy.dir/src/core/global_object_lists.cpp.o CMakeFiles/hyphy.dir/src/core/global_things.cpp.o CMakeFiles/hyphy.dir/src/core/hbl_env.cpp.o CMakeFiles/hyphy.dir/src/core/likefunc.cpp.o CMakeFiles/hyphy.dir/src/core/likefunc2.cpp.o CMakeFiles/hyphy.dir/src/core/likefuncocl.cpp.o CMakeFiles/hyphy.dir/src/core/list.cpp.o CMakeFiles/hyphy.dir/src/core/mathobj.cpp.o CMakeFiles/hyphy.dir/src/core/matrix.cpp.o CMakeFiles/hyphy.dir/src/core/nexus.cpp.o CMakeFiles/hyphy.dir/src/core/ntuplestorage.cpp.o CMakeFiles/hyphy.dir/src/core/operation.cpp.o CMakeFiles/hyphy.dir/src/core/parser.cpp.o CMakeFiles/hyphy.dir/src/core/parser2.cpp.o CMakeFiles/hyphy.dir/src/core/polynoml.cpp.o CMakeFiles/hyphy.dir/src/core/simplelist.cpp.o CMakeFiles/hyphy.dir/src/core/site.cpp.o CMakeFiles/hyphy.dir/src/core/stack.cpp.o CMakeFiles/hyphy.dir/src/core/string_buffer.cpp.o CMakeFiles/hyphy.dir/src/core/string_file_wrapper.cpp.o CMakeFiles/hyphy.dir/src/core/strings.cpp.o CMakeFiles/hyphy.dir/src/core/time_difference.cpp.o CMakeFiles/hyphy.dir/src/core/topology.cpp.o CMakeFiles/hyphy.dir/src/core/translation_table.cpp.o CMakeFiles/hyphy.dir/src/core/tree.cpp.o CMakeFiles/hyphy.dir/src/core/tree_evaluator.cpp.o CMakeFiles/hyphy.dir/src/core/tree_iterator.cpp.o CMakeFiles/hyphy.dir/src/core/trie.cpp.o CMakeFiles/hyphy.dir/src/core/trie_iterator.cpp.o CMakeFiles/hyphy.dir/src/core/variable.cpp.o CMakeFiles/hyphy.dir/src/core/variablecontainer.cpp.o CMakeFiles/hyphy.dir/src/core/vector.cpp.o CMakeFiles/hyphy.dir/src/new/bayesgraph.cpp.o CMakeFiles/hyphy.dir/src/new/bayesgraph2.cpp.o CMakeFiles/hyphy.dir/src/new/bgm.cpp.o CMakeFiles/hyphy.dir/src/new/bgm2.cpp.o CMakeFiles/hyphy.dir/src/new/scfg.cpp.o CMakeFiles/hyphy.dir/src/utils/hyphyunixutils.cpp.o CMakeFiles/hyphy.dir/src/contrib/mersenne_twister.cpp.o CMakeFiles/hyphy.dir/src/contrib/regex.cpp.o CMakeFiles/hyphy.dir/src/mains/unix.cpp.o -o hyphy -ldl -lpthread -lcrypto -lcurl -lssl -lsqlite3 -lgomp -lpthread mklink HYPHYMP -> hyphy ln -sf hyphy HYPHYMP make[5]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' [100%] Built target hyphy make -f CMakeFiles/MP.dir/build.make CMakeFiles/MP.dir/depend make[5]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' cd /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hyphy-2.5.28+dfsg /build/hyphy-2.5.28+dfsg /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles/MP.dir/DependInfo.cmake --color= Dependee "/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles/MP.dir/DependInfo.cmake" is newer than depender "/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles/MP.dir/depend.internal". 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Scanning dependencies of target MP make[5]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' make -f CMakeFiles/MP.dir/build.make CMakeFiles/MP.dir/build make[5]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' make[5]: Nothing to be done for 'CMakeFiles/MP.dir/build'. make[5]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' [100%] Built target MP make[4]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles 0 make[3]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' make -f CMakeFiles/Makefile2 MPI make[3]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/hyphy-2.5.28+dfsg -B/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles 20 make -f CMakeFiles/Makefile2 CMakeFiles/MPI.dir/all make[4]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' make -f CMakeFiles/HYPHYMPI.dir/build.make CMakeFiles/HYPHYMPI.dir/depend make[5]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' cd /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/hyphy-2.5.28+dfsg /build/hyphy-2.5.28+dfsg /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu /build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles/HYPHYMPI.dir/DependInfo.cmake --color= Dependee "/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles/HYPHYMPI.dir/DependInfo.cmake" is newer than depender "/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles/HYPHYMPI.dir/depend.internal". Dependee "/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu/CMakeFiles/HYPHYMPI.dir/depend.internal". 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-I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/dataset_filter.cpp [ 25%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/dataset_filter_numeric.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/dataset_filter_numeric.cpp [ 30%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/fisher_exact.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/fisher_exact.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/fisher_exact.cpp [ 30%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/formula.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 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-I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/global_things.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/global_things.cpp [ 40%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/hbl_env.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/hbl_env.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/hbl_env.cpp [ 40%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/likefunc.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/likefunc.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/likefunc.cpp [ 40%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/likefunc2.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w 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/build/hyphy-2.5.28+dfsg/src/core/likefuncocl.cpp [ 45%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/list.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/list.cpp [ 45%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/mathobj.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/mathobj.cpp [ 45%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/matrix.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/matrix.cpp [ 50%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/nexus.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/nexus.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/nexus.cpp [ 50%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/ntuplestorage.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w 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/build/hyphy-2.5.28+dfsg/src/core/operation.cpp [ 55%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/parser.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/parser.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/parser.cpp [ 55%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/parser2.cpp.o /usr/bin/c++ 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-I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/polynoml.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/polynoml.cpp [ 60%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/simplelist.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/simplelist.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/simplelist.cpp [ 60%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/site.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/site.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/site.cpp [ 60%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/stack.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/stack.cpp [ 60%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/string_buffer.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/string_buffer.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/string_buffer.cpp [ 65%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/string_file_wrapper.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/string_file_wrapper.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/string_file_wrapper.cpp [ 65%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/strings.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/strings.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/strings.cpp [ 65%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/time_difference.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/time_difference.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/time_difference.cpp [ 70%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/topology.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/topology.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/topology.cpp [ 70%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/translation_table.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/translation_table.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/translation_table.cpp [ 70%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/tree.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/tree.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/tree.cpp [ 75%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/tree_evaluator.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/tree_evaluator.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/tree_evaluator.cpp [ 75%] Building CXX object 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-D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/trie.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/trie.cpp [ 80%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/trie_iterator.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/trie_iterator.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/trie_iterator.cpp [ 80%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/variable.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 -std=c++14 -w -pthread -g -fopenmp -Weffc++ -Wextra -Wall -w -Wno-int-to-pointer-cast -o CMakeFiles/HYPHYMPI.dir/src/core/variable.cpp.o -c /build/hyphy-2.5.28+dfsg/src/core/variable.cpp [ 80%] Building CXX object CMakeFiles/HYPHYMPI.dir/src/core/variablecontainer.cpp.o /usr/bin/c++ -D_HYPHY_LIBDIRECTORY_=\"/usr/share/hyphy\" -D_SLKP_LFENGINE_REWRITE_ -D__AFYP_REWRITE_BGM__ -D__HYPHYCURL__ -D__HYPHYMPI__ -D__UNIX__ -I/build/hyphy-2.5.28+dfsg/src/core/include -I/build/hyphy-2.5.28+dfsg/src/contrib -I/build/hyphy-2.5.28+dfsg/src/lib/Link -I/build/hyphy-2.5.28+dfsg/src/new/include -I/usr/lib/i386-linux-gnu/openmpi/include/openmpi -I/usr/lib/i386-linux-gnu/openmpi/include -g -O2 -fdebug-prefix-map=/build/hyphy-2.5.28+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fsigned-char -O3 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./tests/hbltests/UnitTests/HBLCommands/DataSet.bf ./tests/hbltests/UnitTests/HBLCommands/DataSetFilter.bf ./tests/hbltests/UnitTests/HBLCommands/DeleteObject.bf ./tests/hbltests/UnitTests/HBLCommands/Differentiate.bf ./tests/hbltests/UnitTests/HBLCommands/Divide.bf ./tests/hbltests/UnitTests/HBLCommands/Do.bf ./tests/hbltests/UnitTests/HBLCommands/DoSQL.bf ./tests/hbltests/UnitTests/HBLCommands/Dollarsign.bf ./tests/hbltests/UnitTests/HBLCommands/DoubleAmpersand.bf ./tests/hbltests/UnitTests/HBLCommands/DoubleEquals.bf ./tests/hbltests/UnitTests/HBLCommands/DoubleVerticalBar.bf ./tests/hbltests/UnitTests/HBLCommands/Eigensystem.bf ./tests/hbltests/UnitTests/HBLCommands/Erf.bf ./tests/hbltests/UnitTests/HBLCommands/Eval.bf ./tests/hbltests/UnitTests/HBLCommands/ExclamationPoint.bf ./tests/hbltests/UnitTests/HBLCommands/ExclamationPointEquals.bf ./tests/hbltests/UnitTests/HBLCommands/ExecuteAFile.bf ./tests/hbltests/UnitTests/HBLCommands/ExecuteCommands.bf ./tests/hbltests/UnitTests/HBLCommands/Exp.bf ./tests/hbltests/UnitTests/HBLCommands/Export.bf ./tests/hbltests/UnitTests/HBLCommands/Ffunction.bf ./tests/hbltests/UnitTests/HBLCommands/FindRoot.bf ./tests/hbltests/UnitTests/HBLCommands/For.bf ./tests/hbltests/UnitTests/HBLCommands/Format.bf ./tests/hbltests/UnitTests/HBLCommands/Function.bf ./tests/hbltests/UnitTests/HBLCommands/Gamma.bf ./tests/hbltests/UnitTests/HBLCommands/GammaDist.bf ./tests/hbltests/UnitTests/HBLCommands/GetDataInfo.bf ./tests/hbltests/UnitTests/HBLCommands/GetInformation.bf ./tests/hbltests/UnitTests/HBLCommands/GetString.bf ./tests/hbltests/UnitTests/HBLCommands/Greaterthan.bf ./tests/hbltests/UnitTests/HBLCommands/Greaterthanorequalto.bf ./tests/hbltests/UnitTests/HBLCommands/HarvestFrequencies.bf ./tests/hbltests/UnitTests/HBLCommands/IBeta.bf ./tests/hbltests/UnitTests/HBLCommands/IGamma.bf ./tests/hbltests/UnitTests/HBLCommands/If.bf ./tests/hbltests/UnitTests/HBLCommands/Integrate.bf ./tests/hbltests/UnitTests/HBLCommands/Inverse.bf ./tests/hbltests/UnitTests/HBLCommands/JSON.bf ./tests/hbltests/UnitTests/HBLCommands/Join.bf ./tests/hbltests/UnitTests/HBLCommands/LUDecompose.bf ./tests/hbltests/UnitTests/HBLCommands/LUSolve.bf ./tests/hbltests/UnitTests/HBLCommands/Lessthan.bf ./tests/hbltests/UnitTests/HBLCommands/Lessthanorequalto.bf ./tests/hbltests/UnitTests/HBLCommands/LnGamma.bf ./tests/hbltests/UnitTests/HBLCommands/LoadFunctionLibrary.bf ./tests/hbltests/UnitTests/HBLCommands/Log.bf ./tests/hbltests/UnitTests/HBLCommands/MAccess_bracket.bf ./tests/hbltests/UnitTests/HBLCommands/Max.bf ./tests/hbltests/UnitTests/HBLCommands/Min.bf ./tests/hbltests/UnitTests/HBLCommands/Model.bf ./tests/hbltests/UnitTests/HBLCommands/Percentsign.bf ./tests/hbltests/UnitTests/HBLCommands/Random.bf ./tests/hbltests/UnitTests/HBLCommands/ReplicateConstraint.bf ./tests/hbltests/UnitTests/HBLCommands/RequireVersion.bf ./tests/hbltests/UnitTests/HBLCommands/RerootTree.bf ./tests/hbltests/UnitTests/HBLCommands/Return.bf ./tests/hbltests/UnitTests/HBLCommands/Rows.bf ./tests/hbltests/UnitTests/HBLCommands/Simplex.bf ./tests/hbltests/UnitTests/HBLCommands/Simplify.bf ./tests/hbltests/UnitTests/HBLCommands/SimulateDataSet.bf ./tests/hbltests/UnitTests/HBLCommands/Sin.bf ./tests/hbltests/UnitTests/HBLCommands/Sqrt.bf ./tests/hbltests/UnitTests/HBLCommands/Sscanf.bf ./tests/hbltests/UnitTests/HBLCommands/Subtract.bf ./tests/hbltests/UnitTests/HBLCommands/Tan.bf ./tests/hbltests/UnitTests/HBLCommands/Time.bf ./tests/hbltests/UnitTests/HBLCommands/TipCount.bf ./tests/hbltests/UnitTests/HBLCommands/TipName.bf ./tests/hbltests/UnitTests/HBLCommands/Topology.bf ./tests/hbltests/UnitTests/HBLCommands/Transpose.bf ./tests/hbltests/UnitTests/HBLCommands/Tree.bf ./tests/hbltests/UnitTests/HBLCommands/Type.bf ./tests/hbltests/UnitTests/HBLCommands/While.bf ./tests/hbltests/UnitTests/HBLCommands/ZCDF.bf ./tests/hbltests/UnitTests/HBLCommands/assert.bf ./tests/hbltests/UnitTests/HBLCommands/break.bf ./tests/hbltests/UnitTests/HBLCommands/fscanf_fprintf.bf ./tests/hbltests/UnitTests/HBLCommands/include.bf ./tests/hbltests/UnitTests/HBLCommands/lfunction.bf ./tests/hbltests/UnitTests/HBLCommands/libv3_iofunctions.bf ./tests/hbltests/UnitTests/HBLCommands/libv3_math.bf ./tests/hbltests/UnitTests/HBLCommands/libv3_utilityfunctions.bf ./tests/hbltests/UnitTests/HBLCommands/namespace.bf \n\n------------------------ALL TEST PASSED------------------------------------\n make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install -O--buildsystem=cmake cd obj-i686-linux-gnu && make -j10 install DESTDIR=/build/hyphy-2.5.28\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' /usr/bin/cmake -S/build/hyphy-2.5.28+dfsg -B/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/partitionSequences.ibf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/qndhelper3.ibf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionLRT.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses -- 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/build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREVxBivariate.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2+Inv.def -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma1.def -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_synvar.def -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/gamma2.def -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/MG94xREV.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/2RatesAnalyses/PARRIS_M3.def -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SeqAlignmentCodon.bf -- Installing: 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/build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/srs.ibf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Samplers/lhc.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/PairwiseRelativeRatio.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SequentialAddition.ibf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/doNNISwap.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/DistanceMatrix.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/F_ST.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/Miscellaneous/phylohandbook -- Installing: 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/build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/aBSREL.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FEL.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/RELAX.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/PRIME.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/FADE.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/MEME.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/contrast-fel.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/SelectionAnalyses/SLAC.bf -- 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/build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM+Freqs.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGFreqsEstimator.ibf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/mtREV24 -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EmpiricalAA/IAV -- Installing: 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/build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAA.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/LCAP.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/S4 -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/CF3x4.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff_F.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.ibf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customCF3x4.mdl -- 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/build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K3ST.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customF1x4.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAMuse95.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.ibf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/PCH -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin+F.mdl -- Installing: 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/build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/K2P.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Jones.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GY94w9.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAFreqs.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/GRM.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/NRM.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/custm4x4.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wEX.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAAFreq.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+MLFREQS.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Custom_AA.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MEC.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94custom.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94x2.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/F81_binary.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters4.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Dayhoff.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAEqualInput -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNA16SvH.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/TrN.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/STGRM.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVwithin.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/UniversalCode.def -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtMAM_F.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/chooseGeneticCode.def -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94customFreqs.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/fitness.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/ECM+F+omega.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV_1 -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EIAA.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MG94wAAF61multiple.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/modelParameters5.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineHM.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/HIVbetween.ibf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/mtREV_24_F.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/WAG_F.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/defineGamma.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/MGwAA.ibf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/EX.dat -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/RNAREV -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/Yang2000Distributions.def -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/rtREV.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/TemplateModels/reducedREV.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/distanceRMethodNPBootstrap.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/bayesgraph.ibf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/pairwiseDistanceEstimator.ibf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/branchSwappingFunctions.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3 -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/function-loader.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/UtilityFunctions.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/all-terms.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/stats.bf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/TemplateBatchFiles/libv3/models/model_functions.bf -- Installing: 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/build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Codon/MG94_HKY85x3_4.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/REV.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/HKY85.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/REVBetaGamma.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/F81.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/EFVEstimated.ibf -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Nucleotide/TrN.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Fitness.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/mtREV.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Jones.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/Dayhoff.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Aminoacid/EIAA.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/SubstitutionModels/Binary/F81.mdl -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Euplotid_Nuclear.cod -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Thraustochytrium_mtDNA.cod -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Alt_Yeast_Nuclear.cod -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Yeast_mtDNA.cod -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Invertebrate_mtDNA.cod -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ciliate.cod -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Mold_mtDNA.cod -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Flatworm_mtDNA.cod -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Echinoderm_mtDNA.cod -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Ascidian_mtDNA.cod -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Blepharisma_Nuclear.cod -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/share/hyphy/GeneticCodes/Vertebratemtdna.cod -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/bin/hyphy -- Installing: /build/hyphy-2.5.28+dfsg/debian/tmp/usr/bin/HYPHYMPI -- Set runtime path of "/build/hyphy-2.5.28+dfsg/debian/tmp/usr/bin/HYPHYMPI" to "" make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg/obj-i686-linux-gnu' debian/rules override_dh_install-arch make[1]: Entering directory '/build/hyphy-2.5.28+dfsg' dh_install -a chrpath --delete obj-*/HYPHYMPI make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg' debian/rules override_dh_install-indep make[1]: Entering directory '/build/hyphy-2.5.28+dfsg' dh_install -i make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg' debian/rules override_dh_installdocs-arch make[1]: Entering directory '/build/hyphy-2.5.28+dfsg' dh_installdocs -a for news in debian/NEWS.Debian.* ; do \ pkg=`echo ${news} | sed 's/.*NEWS.Debian.//'` ; \ cp -a ${news} debian/${pkg}/usr/share/doc/${pkg}/NEWS.Debian ; \ done make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg' debian/rules override_dh_installdocs-indep make[1]: Entering directory '/build/hyphy-2.5.28+dfsg' dh_installdocs -i make[1]: Leaving directory '/build/hyphy-2.5.28+dfsg' dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'hyphy-mpi-dbgsym' in '../hyphy-mpi-dbgsym_2.5.28+dfsg-3_i386.deb'. dpkg-deb: building package 'hyphy-common' in '../hyphy-common_2.5.28+dfsg-3_all.deb'. dpkg-deb: building package 'hyphy-mpi' in '../hyphy-mpi_2.5.28+dfsg-3_i386.deb'. dpkg-deb: building package 'hyphy-pt' in '../hyphy-pt_2.5.28+dfsg-3_i386.deb'. dpkg-deb: building package 'hyphy-pt-dbgsym' in '../hyphy-pt-dbgsym_2.5.28+dfsg-3_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../hyphy_2.5.28+dfsg-3_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/10130 and its subdirectories I: Current time: Wed Jun 23 06:22:56 -12 2021 I: pbuilder-time-stamp: 1624472576 Wed Jun 23 18:22:57 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Wed Jun 23 18:22:57 UTC 2021 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Wed Jun 23 18:24:08 UTC 2021 I: Deleting $TMPDIR on ionos16-i386.debian.net. Wed Jun 23 18:24:08 UTC 2021 I: hyphy_2.5.28+dfsg-3_i386.changes: Format: 1.8 Date: Tue, 16 Mar 2021 21:52:00 +0100 Source: hyphy Binary: hyphy-common hyphy-mpi hyphy-mpi-dbgsym hyphy-pt hyphy-pt-dbgsym Architecture: all i386 Version: 2.5.28+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: hyphy-common - Hypothesis testing using Phylogenies (common files) hyphy-mpi - Hypothesis testing using Phylogenies (MPI version) hyphy-pt - Hypothesis testing using Phylogenies (pthreads version) Closes: 985284 Changes: hyphy (2.5.28+dfsg-3) unstable; urgency=medium . * d/*.maintscript: handle symbolic link removal in hyphy 2.5.18+dfsg-1. Closes: #985284 Checksums-Sha1: 95d39a4d99aa09c9ac55259a26db4b96d222ec54 565904 hyphy-common_2.5.28+dfsg-3_all.deb 3ad29306069f390a9a8f1e24404c40021accd7fc 3683832 hyphy-mpi-dbgsym_2.5.28+dfsg-3_i386.deb ad4dbc119bcbec6dd5d2d529ed55a389ab1f3f78 1005076 hyphy-mpi_2.5.28+dfsg-3_i386.deb a76c306f5357b402cbf286fa416e4da8f8f9a221 2684384 hyphy-pt-dbgsym_2.5.28+dfsg-3_i386.deb 7784f255b0d81eab0dc32183e67ba3553b610be6 971340 hyphy-pt_2.5.28+dfsg-3_i386.deb 4d5f7d6fd14c9f9f9e9beb6a2247485bfcdc897e 8408 hyphy_2.5.28+dfsg-3_i386.buildinfo Checksums-Sha256: e7c8e904e20f12cb01d9b4def1fb661b1fb63679d2c755184a18431adf4a71b4 565904 hyphy-common_2.5.28+dfsg-3_all.deb 016db7690e6a84559caa6594d540a66126ea4d573c4862babb76bc13334095b7 3683832 hyphy-mpi-dbgsym_2.5.28+dfsg-3_i386.deb 89246cb5d83f405b6079fce023f0105689cea4f4b296c7a418a33688912d6d8d 1005076 hyphy-mpi_2.5.28+dfsg-3_i386.deb cfe4b36e90b6e3b3f68ee348597afda4e7e2878125a3b5aba6e2904d214899ee 2684384 hyphy-pt-dbgsym_2.5.28+dfsg-3_i386.deb 5d2fb20f39017392886572f3b85776dbb992d71897c92135714c0920205522ea 971340 hyphy-pt_2.5.28+dfsg-3_i386.deb 63269b5059c5caaa71970ed964538dfbebf7a94a25ea99b6a758a84d96af1cd2 8408 hyphy_2.5.28+dfsg-3_i386.buildinfo Files: f8c08fe73d92845597a5fff4a50510a5 565904 science optional hyphy-common_2.5.28+dfsg-3_all.deb fb066c20a498499a9fc74fcc6f8977cc 3683832 debug optional hyphy-mpi-dbgsym_2.5.28+dfsg-3_i386.deb f45a61da6b608f6955d5313d01c10172 1005076 science optional hyphy-mpi_2.5.28+dfsg-3_i386.deb b44f6132b9bdfe38ea54c8a974d2d839 2684384 debug optional hyphy-pt-dbgsym_2.5.28+dfsg-3_i386.deb 233fdb6b87d73f839c91a6aa1d382f2f 971340 science optional hyphy-pt_2.5.28+dfsg-3_i386.deb 91c4bd945426bcb9efccd67f50aaea6c 8408 science optional hyphy_2.5.28+dfsg-3_i386.buildinfo Wed Jun 23 18:24:10 UTC 2021 I: diffoscope 172 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.pVcwzHrhBV/hyphy_2.5.28+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.pVcwzHrhBV/hyphy_2.5.28+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.pVcwzHrhBV/hyphy_2.5.28+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.pVcwzHrhBV/b1/hyphy_2.5.28+dfsg-3_i386.changes /srv/reproducible-results/rbuild-debian/tmp.pVcwzHrhBV/b2/hyphy_2.5.28+dfsg-3_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.356s) 0.356s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.106s) 0.106s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Wed Jun 23 18:24:12 UTC 2021 I: diffoscope 172 found no differences in the changes files, and a .buildinfo file also exists. Wed Jun 23 18:24:12 UTC 2021 I: hyphy from bullseye built successfully and reproducibly on i386. Wed Jun 23 18:24:13 UTC 2021 I: Submitting .buildinfo files to external archives: Wed Jun 23 18:24:13 UTC 2021 I: Submitting 12K b1/hyphy_2.5.28+dfsg-3_i386.buildinfo.asc Wed Jun 23 18:24:15 UTC 2021 I: Submitting 12K b2/hyphy_2.5.28+dfsg-3_i386.buildinfo.asc Wed Jun 23 18:24:15 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Jun 23 18:24:15 UTC 2021 I: Done submitting .buildinfo files. Wed Jun 23 18:24:15 UTC 2021 I: Removing signed hyphy_2.5.28+dfsg-3_i386.buildinfo.asc files: removed './b1/hyphy_2.5.28+dfsg-3_i386.buildinfo.asc' removed './b2/hyphy_2.5.28+dfsg-3_i386.buildinfo.asc'