Sun Jul 25 08:40:49 UTC 2021 I: starting to build delly/bullseye/i386 on jenkins on '2021-07-25 08:40' Sun Jul 25 08:40:49 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_3/13563/console.log Sun Jul 25 08:40:49 UTC 2021 I: Downloading source for bullseye/delly=0.8.7-1 --2021-07-25 08:40:49-- http://cdn-fastly.deb.debian.org/debian/pool/main/d/delly/delly_0.8.7-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2074 (2.0K) Saving to: ‘delly_0.8.7-1.dsc’ 0K .. 100% 108M=0s 2021-07-25 08:40:49 (108 MB/s) - ‘delly_0.8.7-1.dsc’ saved [2074/2074] Sun Jul 25 08:40:49 UTC 2021 I: delly_0.8.7-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: delly Binary: delly Architecture: any Version: 0.8.7-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/dellytools/delly Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/delly Vcs-Git: https://salsa.debian.org/med-team/delly.git Build-Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath Package-List: delly deb science optional arch=any Checksums-Sha1: c7b180ebc2a6cdbf760b8bc4c7ce23fcc759aac6 86904 delly_0.8.7.orig.tar.xz b6735fff8e100b8db55a8f7d72d5c09157408f90 4204 delly_0.8.7-1.debian.tar.xz Checksums-Sha256: b78e165e3a377cffe9c886b8c2c64d0ff9980aa9d3e60730dc2bd8049d33083b 86904 delly_0.8.7.orig.tar.xz 23805c220f70871a525b358de939992fa8111e829c9b4b6a91fa939be2a3fbd8 4204 delly_0.8.7-1.debian.tar.xz Files: bd54826c69775a3c7c0be0b0297e2e4a 86904 delly_0.8.7.orig.tar.xz 666ff01d310a3f45222a1605790f9188 4204 delly_0.8.7-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJEBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmAESz8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFloQ/zBIrvrgd3WFHRb+KQQhOt5hySvWrGG210 yAmITYiA59TPb9wJQSnT76wbTyF62zQv9HU1DUt9EK3ufcRdqwoXgYhotz4yuSp5 /XweRs5lnTZmCUa0tUnOn7Q0pk5qpVUo2uOlpNG41i3aZldL9A0AModSg0/+5zxX YTNHLMBoNPcBWnu+zxofNqb/6n8AZ73XVYxS2wWJ84pOS7DSUNmhBbzcF/kLGQt3 7gP9sYshGEXm0Qf7K6hGVJW5PwSJUFVm72dnepBbh1C++BjGoQ2B0PDUg1jxtjzM 0sYJmnjrnGwUF0nEUlC3XsPPh4fYG/dRL3PP/wLYnIFHI9WON2IUItj4X7w9wSvL ZzvCKq6z+FIA64Nlj5OAAVd/amGK2HB3Y1K/pHoB+tKOm9v2s6UyEb0HoeGnRTMQ 0c8AbrMrscp4xxFN0dYfceWFy78uvUdLhm7C0tmVjUGAN1WTw2Lm9LNhvH7p+CAx gzK1CNGNRrn6JJ76HFMMAx92K0SA8DjqxuNYDw5HUJ+iJXyAohBgNaw6L/8rPJZ4 mrEe9J2KeF694ebhUpCRnyDJHOFqVavnFSJNhTTzZxpHSohODkH09ETiRRWS+yb/ s/LyNAg4UkJxLBsRH5AL4JYAeqPZ07goaTY691g25BTAP9GJXBrPZsTUrc5qjzKq jS3chLAzjA== =4JfQ -----END PGP SIGNATURE----- Sun Jul 25 08:40:49 UTC 2021 I: Checking whether the package is not for us Sun Jul 25 08:40:49 UTC 2021 I: Starting 1st build on remote node ionos2-i386.debian.net. Sun Jul 25 08:40:49 UTC 2021 I: Preparing to do remote build '1' on ionos2-i386.debian.net. Sun Jul 25 08:49:12 UTC 2021 I: Deleting $TMPDIR on ionos2-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Jul 24 20:40:53 -12 2021 I: pbuilder-time-stamp: 1627202453 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [delly_0.8.7-1.dsc] I: copying [./delly_0.8.7.orig.tar.xz] I: copying [./delly_0.8.7-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.7kRsKtzL/trustedkeys.kbx': General error gpgv: Signature made Sun Jan 17 02:35:43 2021 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./delly_0.8.7-1.dsc dpkg-source: info: extracting delly in delly-0.8.7 dpkg-source: info: unpacking delly_0.8.7.orig.tar.xz dpkg-source: info: unpacking delly_0.8.7-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/28288/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='5950090d7b6e4abfbccad6c16d044a8a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='28288' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.aXwWjhTY8F/pbuilderrc_yo2U --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.aXwWjhTY8F/b1 --logfile b1/build.log delly_0.8.7-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos2-i386 4.19.0-17-686-pae #1 SMP Debian 4.19.194-3 (2021-07-18) i686 GNU/Linux I: ls -l /bin total 5784 -rwxr-xr-x 1 root root 1367848 Jun 21 14:25 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 7 02:38 more -rwsr-xr-x 1 root root 50720 Feb 7 02:38 mount -rwxr-xr-x 1 root root 13856 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:25 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 23 21:25 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Feb 7 02:38 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 21:55 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 7 02:38 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/28288/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-date-time-dev; however: Package libboost-date-time-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} chrpath{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libboost-date-time-dev{a} libboost-date-time1.74-dev{a} libboost-date-time1.74.0{a} libboost-filesystem-dev{a} libboost-filesystem1.74-dev{a} libboost-filesystem1.74.0{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-system-dev{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost1.74-dev{a} libbrotli1{a} libbz2-dev{a} libcurl3-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1{a} libfile-stripnondeterminism-perl{a} libhts-dev{a} libhts3{a} libicu-dev{a} libicu67{a} libldap-2.4-2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 70 newly installed, 0 to remove and 0 not upgraded. Need to get 49.4 MB of archives. After unpacking 302 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 chrpath i386 0.16-2+b1 [17.5 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-7 [8775 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 icu-devtools i386 67.1-7 [209 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 libboost1.74-dev i386 1.74.0-9 [9534 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 libboost-date-time1.74.0 i386 1.74.0-9 [241 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 libboost-serialization1.74.0 i386 1.74.0-9 [346 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 libboost-serialization1.74-dev i386 1.74.0-9 [390 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 libboost-date-time1.74-dev i386 1.74.0-9 [250 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libboost-date-time-dev i386 1.74.0.3 [4332 B] Get: 40 http://deb.debian.org/debian bullseye/main i386 libboost-filesystem1.74.0 i386 1.74.0-9 [288 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 libboost-system1.74.0 i386 1.74.0-9 [241 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 libboost-system1.74-dev i386 1.74.0-9 [243 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 libboost-filesystem1.74-dev i386 1.74.0-9 [311 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 libboost-filesystem-dev i386 1.74.0.3 [4368 B] Get: 45 http://deb.debian.org/debian bullseye/main i386 libboost-regex1.74.0 i386 1.74.0-9 [542 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 libicu-dev i386 67.1-7 [9801 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 libboost-regex1.74-dev i386 1.74.0-9 [618 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 libboost-iostreams1.74-dev i386 1.74.0-9 [275 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 libboost-iostreams-dev i386 1.74.0.3 [4320 B] Get: 50 http://deb.debian.org/debian bullseye/main i386 libboost-program-options1.74.0 i386 1.74.0-9 [365 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 libboost-program-options1.74-dev i386 1.74.0-9 [397 kB] Get: 52 http://deb.debian.org/debian bullseye/main i386 libboost-program-options-dev i386 1.74.0.3 [4344 B] Get: 53 http://deb.debian.org/debian bullseye/main i386 libboost-system-dev i386 1.74.0.3 [4472 B] Get: 54 http://deb.debian.org/debian bullseye/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 libbz2-dev i386 1.0.8-4 [31.3 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 libsasl2-modules-db i386 2.1.27+dfsg-2.1 [70.0 kB] Get: 57 http://deb.debian.org/debian bullseye/main i386 libsasl2-2 i386 2.1.27+dfsg-2.1 [110 kB] Get: 58 http://deb.debian.org/debian bullseye/main i386 libldap-2.4-2 i386 2.4.57+dfsg-3 [244 kB] Get: 59 http://deb.debian.org/debian bullseye/main i386 libnghttp2-14 i386 1.43.0-1 [85.7 kB] Get: 60 http://deb.debian.org/debian bullseye/main i386 libpsl5 i386 0.21.0-1.2 [57.9 kB] Get: 61 http://deb.debian.org/debian bullseye/main i386 librtmp1 i386 2.4+20151223.gitfa8646d.1-2+b2 [64.3 kB] Get: 62 http://deb.debian.org/debian bullseye/main i386 libssh2-1 i386 1.9.0-2 [164 kB] Get: 63 http://deb.debian.org/debian bullseye/main i386 libcurl3-gnutls i386 7.74.0-1.3+b1 [368 kB] Get: 64 http://deb.debian.org/debian bullseye/main i386 libcurl4-gnutls-dev i386 7.74.0-1.3+b1 [471 kB] Get: 65 http://deb.debian.org/debian bullseye/main i386 libdeflate0 i386 1.7-1 [48.4 kB] Get: 66 http://deb.debian.org/debian bullseye/main i386 libdeflate-dev i386 1.7-1 [44.4 kB] Get: 67 http://deb.debian.org/debian bullseye/main i386 libhts3 i386 1.11-4 [408 kB] Get: 68 http://deb.debian.org/debian bullseye/main i386 liblzma-dev i386 5.2.5-2 [240 kB] Get: 69 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] Get: 70 http://deb.debian.org/debian bullseye/main i386 libhts-dev i386 1.11-4 [3817 kB] Fetched 49.4 MB in 15s (3394 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_i386.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../01-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_i386.deb ... 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Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:i386 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libboost-program-options1.74.0:i386 (1.74.0-9) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:i386 (1.0.9-2+b2) ... Setting up libnghttp2-14:i386 (1.43.0-1) ... Setting up libmagic1:i386 (1:5.39-3) ... Setting up libdeflate0:i386 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up libboost-filesystem1.74.0:i386 (1.74.0-9) ... Setting up file (1:5.39-3) ... Setting up libboost-program-options1.74-dev:i386 (1.74.0-9) ... Setting up libsasl2-modules-db:i386 (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libboost-program-options-dev:i386 (1.74.0.3) ... Setting up librtmp1:i386 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libboost-system1.74-dev:i386 (1.74.0-9) ... Setting up libsigsegv2:i386 (2.13-1) ... Setting up libboost-regex1.74.0:i386 (1.74.0-9) ... Setting up autopoint (0.21-4) ... Setting up icu-devtools (67.1-7) ... Setting up libsasl2-2:i386 (2.1.27+dfsg-2.1) ... Setting up liblzma-dev:i386 (5.2.5-2) ... Setting up libboost-serialization1.74.0:i386 (1.74.0-9) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:i386 (1.9.0-2) ... Setting up libboost-filesystem1.74-dev:i386 (1.74.0-9) ... Setting up libboost-date-time1.74.0:i386 (1.74.0-9) ... Setting up libdeflate-dev:i386 (1.7-1) ... Setting up libelf1:i386 (0.183-1) ... Setting up libicu-dev:i386 (67.1-7) ... Setting up libxml2:i386 (2.9.10+dfsg-6.7) ... Setting up libboost-filesystem-dev:i386 (1.74.0.3) ... Setting up chrpath (0.16-2+b1) ... Setting up libbz2-dev:i386 (1.0.8-4) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libboost-system-dev:i386 (1.74.0.3) ... Setting up libldap-2.4-2:i386 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up libcurl3-gnutls:i386 (7.74.0-1.3+b1) ... Setting up libcurl4-gnutls-dev:i386 (7.74.0-1.3+b1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up libboost-serialization1.74-dev:i386 (1.74.0-9) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up libboost-regex1.74-dev:i386 (1.74.0-9) ... Setting up groff-base (1.22.4-6) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libhts3:i386 (1.11-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhts-dev:i386 (1.11-4) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libboost-iostreams1.74-dev:i386 (1.74.0-9) ... Setting up dh-autoreconf (20) ... Setting up libboost-date-time1.74-dev:i386 (1.74.0-9) ... Setting up libboost-date-time-dev:i386 (1.74.0.3) ... Setting up debhelper (13.3.4) ... Setting up libboost-iostreams-dev:i386 (1.74.0.3) ... Processing triggers for libc-bin (2.31-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/delly-0.8.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package delly dpkg-buildpackage: info: source version 0.8.7-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/delly-0.8.7' dh_auto_clean make -j8 distclean make[2]: Entering directory '/build/delly-0.8.7' if [ -r src/htslib/Makefile ]; then cd src/htslib && make clean; fi rm -f .htslib src/delly .htslib.o src/delly.o .htslib rm -f src/delly make[2]: Leaving directory '/build/delly-0.8.7' rm -rf src/dpe src/delly bin/delly make[1]: Leaving directory '/build/delly-0.8.7' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/delly-0.8.7' dh_auto_build -- BUILT_PROGRAMS="src/delly src/dpe" PARALLEL=1 make -j8 "INSTALL=install --strip-program=true" "BUILT_PROGRAMS=src/delly src/dpe" PARALLEL=1 make[2]: Entering directory '/build/delly-0.8.7' if [ -r src/htslib/Makefile ]; then cd src/htslib && autoheader && autoconf && ./configure --disable-s3 --disable-gcs --disable-libcurl --disable-plugins && make && make lib-static && cd ../../ && touch .htslib; fi g++ -g -O2 -fdebug-prefix-map=/build/delly-0.8.7=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/delly-0.8.7/src/htslib/ -pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS -fno-strict-aliasing -fpermissive -fopenmp -DOPENMP -O3 -fno-tree-vectorize -DNDEBUG src/delly.cpp -o src/delly -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -L/build/delly-0.8.7/src/htslib/ -L/build/delly-0.8.7/src/htslib//lib -lboost_iostreams -lboost_filesystem -lboost_system -lboost_program_options -lboost_date_time -lhts -lz -llzma -lbz2 -Wl,-rpath,/build/delly-0.8.7/src/htslib/ g++ -g -O2 -fdebug-prefix-map=/build/delly-0.8.7=. -fstack-protector-strong -Wformat -Werror=format-security -isystem /build/delly-0.8.7/src/htslib/ -pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS -fno-strict-aliasing -fpermissive -fopenmp -DOPENMP -O3 -fno-tree-vectorize -DNDEBUG src/dpe.cpp -o src/dpe -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -L/build/delly-0.8.7/src/htslib/ -L/build/delly-0.8.7/src/htslib//lib -lboost_iostreams -lboost_filesystem -lboost_system -lboost_program_options -lboost_date_time -lhts -lz -llzma -lbz2 -Wl,-rpath,/build/delly-0.8.7/src/htslib/ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/property_map/vector_property_map.hpp:14, from /usr/include/boost/property_map/property_map.hpp:602, from /usr/include/boost/graph/adjacency_list.hpp:27, from src/dpe.cpp:5: /usr/include/boost/progress.hpp:23:1: note: '#pragma message: This header is deprecated. Use the facilities in or instead.' 23 | BOOST_HEADER_DEPRECATED( "the facilities in or " ) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/timer.hpp:21:1: note: '#pragma message: This header is deprecated. Use the facilities in instead.' 21 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/property_map/vector_property_map.hpp:14, from /usr/include/boost/property_map/property_map.hpp:602, from /usr/include/boost/graph/adjacency_list.hpp:27, from src/delly.h:8, from src/delly.cpp:17: /usr/include/boost/progress.hpp:23:1: note: '#pragma message: This header is deprecated. Use the facilities in or instead.' 23 | BOOST_HEADER_DEPRECATED( "the facilities in or " ) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/timer.hpp:21:1: note: '#pragma message: This header is deprecated. Use the facilities in instead.' 21 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ In file included from src/coral.h:18, from src/delly.cpp:22: src/scan.h: In instantiation of 'void torali::scan(const TConfig&, const torali::LibraryInfo&, std::vector >&) [with TConfig = torali::CountDNAConfig]': src/coral.h:707:29: required from here src/scan.h:99:23: warning: comparison of unsigned expression in '>= 0' is always true [-Wtype-limits] 99 | if ((it->lower() >= 0) && (it->upper() < hdr->target_len[refIndex])) { | ~~~~~~~~~~~~~^~~~~ make[2]: Leaving directory '/build/delly-0.8.7' chrpath -d src/dpe src/delly make[1]: Leaving directory '/build/delly-0.8.7' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/delly-0.8.7' # avoiding redundant compile of delly make[1]: Leaving directory '/build/delly-0.8.7' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'delly-dbgsym' in '../delly-dbgsym_0.8.7-1_i386.deb'. dpkg-deb: building package 'delly' in '../delly_0.8.7-1_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../delly_0.8.7-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/28288 and its subdirectories I: Current time: Sat Jul 24 20:49:11 -12 2021 I: pbuilder-time-stamp: 1627202951 Sun Jul 25 08:49:12 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Sun Jul 25 08:49:12 UTC 2021 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Sun Jul 25 08:52:05 UTC 2021 I: Deleting $TMPDIR on ionos16-i386.debian.net. Sun Jul 25 08:52:06 UTC 2021 I: delly_0.8.7-1_i386.changes: Format: 1.8 Date: Sun, 17 Jan 2021 15:27:47 +0100 Source: delly Binary: delly delly-dbgsym Architecture: i386 Version: 0.8.7-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: delly - Structural variant discovery by read analysis Changes: delly (0.8.7-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.1 (routine-update) Checksums-Sha1: 5900b8c1076abde5a6ca4dcf7ea440b0de7aff27 4983344 delly-dbgsym_0.8.7-1_i386.deb e47cd3359d10d08e9b1b84614199d99e149065db 6383 delly_0.8.7-1_i386.buildinfo be4fddb2c0205382a98154032c7063185c567219 345616 delly_0.8.7-1_i386.deb Checksums-Sha256: f95bfbb5289b04905797b3ce22bdad2be6d0474201b54687de3342d5c46cf520 4983344 delly-dbgsym_0.8.7-1_i386.deb dff958110589f7340e71824a556f8643f6230001850e8bf298eacfb5ba631b5a 6383 delly_0.8.7-1_i386.buildinfo 8288593216de0919255adc6b8b2552f2accb43816ff0405610a417cb9ab96138 345616 delly_0.8.7-1_i386.deb Files: 1172995abaa94cfa77036d9edea8ce5e 4983344 debug optional delly-dbgsym_0.8.7-1_i386.deb b42eb96d9673ebfba7f4092d1f686570 6383 science optional delly_0.8.7-1_i386.buildinfo 66ca06a9d2f3ba5c941a92581442d5cd 345616 science optional delly_0.8.7-1_i386.deb Sun Jul 25 08:52:07 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.aXwWjhTY8F/delly_0.8.7-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.aXwWjhTY8F/delly_0.8.7-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.aXwWjhTY8F/delly_0.8.7-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.aXwWjhTY8F/b1/delly_0.8.7-1_i386.changes /srv/reproducible-results/rbuild-debian/tmp.aXwWjhTY8F/b2/delly_0.8.7-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.284s) 0.284s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.065s) 0.064s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sun Jul 25 08:52:08 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Sun Jul 25 08:52:08 UTC 2021 I: delly from bullseye built successfully and reproducibly on i386. Sun Jul 25 08:52:09 UTC 2021 I: Submitting .buildinfo files to external archives: Sun Jul 25 08:52:09 UTC 2021 I: Submitting 8.0K b1/delly_0.8.7-1_i386.buildinfo.asc Sun Jul 25 08:52:10 UTC 2021 I: Submitting 8.0K b2/delly_0.8.7-1_i386.buildinfo.asc Sun Jul 25 08:52:11 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Jul 25 08:52:11 UTC 2021 I: Done submitting .buildinfo files. Sun Jul 25 08:52:11 UTC 2021 I: Removing signed delly_0.8.7-1_i386.buildinfo.asc files: removed './b1/delly_0.8.7-1_i386.buildinfo.asc' removed './b2/delly_0.8.7-1_i386.buildinfo.asc'