Sat Jul 10 21:30:28 UTC 2021 I: starting to build deepnano/bullseye/i386 on jenkins on '2021-07-10 21:30' Sat Jul 10 21:30:28 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_5/15891/console.log Sat Jul 10 21:30:28 UTC 2021 I: Downloading source for bullseye/deepnano=0.0+git20170813.e8a621e-3.1 --2021-07-10 21:30:29-- http://cdn-fastly.deb.debian.org/debian/pool/main/d/deepnano/deepnano_0.0+git20170813.e8a621e-3.1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2269 (2.2K) Saving to: ‘deepnano_0.0+git20170813.e8a621e-3.1.dsc’ 0K .. 100% 196M=0s 2021-07-10 21:30:29 (196 MB/s) - ‘deepnano_0.0+git20170813.e8a621e-3.1.dsc’ saved [2269/2269] Sat Jul 10 21:30:29 UTC 2021 I: deepnano_0.0+git20170813.e8a621e-3.1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: deepnano Binary: deepnano, deepnano-data Architecture: any all Version: 0.0+git20170813.e8a621e-3.1 Maintainer: Debian Med Packaging Team Uploaders: Çağrı ULAŞ , Andreas Tille Homepage: https://bitbucket.org/vboza/deepnano Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/deepnano Vcs-Git: https://salsa.debian.org/med-team/deepnano.git Testsuite: autopkgtest Testsuite-Triggers: poretools-data Build-Depends: debhelper (>= 12~), python3-all, dh-python, python3-markdown, python3-theano Package-List: deepnano deb science optional arch=any deepnano-data deb science optional arch=all Checksums-Sha1: cb3ddadb5ca8b2932174c0e422706363af213f57 99996276 deepnano_0.0+git20170813.e8a621e.orig.tar.xz 74cf1fa9d7e5833b1036e9d65c62210d0a74f8dd 11580 deepnano_0.0+git20170813.e8a621e-3.1.debian.tar.xz Checksums-Sha256: 8c73ea64ee1f94d9c72ce659b94b56de70dde3e285c093f3bc63ceb280a7212c 99996276 deepnano_0.0+git20170813.e8a621e.orig.tar.xz e6b3400ed8ccbe2eecb3b2e032a37dabccbe41ae4093324db18c162a7bddc767 11580 deepnano_0.0+git20170813.e8a621e-3.1.debian.tar.xz Files: b17aed68504c4b7d2a049455fe1c1b23 99996276 deepnano_0.0+git20170813.e8a621e.orig.tar.xz da1e09d15669cd3a7485f6583f19745d 11580 deepnano_0.0+git20170813.e8a621e-3.1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEoLGp81CJVhMOekJc1BatFaxrQ/4FAl2/CQYACgkQ1BatFaxr Q/6ogBAAjxdrkYeS+lIrGYMmlFiqNOrF7U4JlpgTql2mMFZbfRorfsKh66jaJzZn j71LJmUiDdaJMjtCY/pwuT4I69rpw/R2mv25dCpy5XEWpitFTlXmXiISwGSUrrDz 30aoZPXwSzT8emh9SO6Un2y6R/sI4Qcx+1zTOhzvMyrMXahuCkYnQTOX0Ho1bpoR yOLKLBKwc/oZmZVXB27w1sRH9jWPmVwj1pK5TR2OfXJakkYe20Vgxdq6eVSPb5en kYSkwjBv3ghSLnVCdKi13ZiLgtY+27X58auodSBfFpMlNKHtbk78BHVFDiG/RYcD 6yPj2nBmDn36pthoYWi8r+Hq5UGre7cAOpVBFGGNZc2xmLLE1Sn1Xo6mn30Pa1WU pAubvKa4rY05nZNZM8hl8nzMs/n/c41yEeb8zMBkzojAWKHt7aHMksugbu91hKXT 8Xvq/2SiZBHcR1gRQjTcYB4k9E+1d5VfeOdkk49iBL2t+wmVGaqdF/EQWNvJir7O fjvv+nwuC7Y1JCiY+hd+AX0qirk6+utSGvQKX7LucRh3AHb6JImCEcTB7FQ2k8CY YZQylqq29cVKWMIz16EouKYIdHCTTyWeLKnwjo7LMc2ZB2KwRDAuEDsHylR7nds/ oCTYRilI8OiBcHMBXe09lPFa4zlb0989CjQgZYrvM/sz+CfoSw8= =hFAa -----END PGP SIGNATURE----- Sat Jul 10 21:30:29 UTC 2021 I: Checking whether the package is not for us Sat Jul 10 21:30:29 UTC 2021 I: Starting 1st build on remote node ionos12-i386.debian.net. Sat Jul 10 21:30:29 UTC 2021 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Sat Jul 10 21:38:01 UTC 2021 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Jul 10 09:31:18 -12 2021 I: pbuilder-time-stamp: 1625952678 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [deepnano_0.0+git20170813.e8a621e-3.1.dsc] I: copying [./deepnano_0.0+git20170813.e8a621e.orig.tar.xz] I: copying [./deepnano_0.0+git20170813.e8a621e-3.1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.AzXjmYgm/trustedkeys.kbx': General error gpgv: Signature made Sun Nov 3 05:06:14 2019 -12 gpgv: using RSA key A0B1A9F3508956130E7A425CD416AD15AC6B43FE gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./deepnano_0.0+git20170813.e8a621e-3.1.dsc dpkg-source: info: extracting deepnano in deepnano-0.0+git20170813.e8a621e dpkg-source: info: unpacking deepnano_0.0+git20170813.e8a621e.orig.tar.xz dpkg-source: info: unpacking deepnano_0.0+git20170813.e8a621e-3.1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying she_bang.patch dpkg-source: info: applying path_align_2d.patch dpkg-source: info: applying py3-compat.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/15631/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=10' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='6b5995fd793143bb8e0ed24eb8e1dc66' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='15631' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.gPPxMLwNis/pbuilderrc_l1w1 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.gPPxMLwNis/b1 --logfile b1/build.log deepnano_0.0+git20170813.e8a621e-3.1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos12-i386 4.19.0-17-686-pae #1 SMP Debian 4.19.194-2 (2021-06-21) i686 GNU/Linux I: ls -l /bin total 5792 -rwxr-xr-x 1 root root 1367848 Jun 21 14:25 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 7 02:38 more -rwsr-xr-x 1 root root 50720 Feb 7 02:38 mount -rwxr-xr-x 1 root root 13856 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:25 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 8 20:43 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Feb 7 02:38 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 21:55 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 7 02:38 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/15631/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), python3-all, dh-python, python3-markdown, python3-theano dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-markdown; however: Package python3-markdown is not installed. pbuilder-satisfydepends-dummy depends on python3-theano; however: Package python3-theano is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas-dev{a} libblas3{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu67{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} liblbfgsb0{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libpipeline1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-decorator{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-markdown{a} python3-minimal{a} python3-numpy{a} python3-pkg-resources{a} python3-scipy{a} python3-six{a} python3-theano{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl cython3 graphviz javascript-common libarchive-cpio-perl libgpuarray-dev libltdl-dev libmail-sendmail-perl lynx python3-nose python3-parameterized python3-pil python3-pydot python3-pygments python3-pygpu python3-yaml wget 0 packages upgraded, 69 newly installed, 0 to remove and 0 not upgraded. Need to get 52.2 MB of archives. After unpacking 214 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 libpython3.9-minimal i386 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2 [98.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 python3.9-minimal i386 3.9.2-1 [1956 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 python3-minimal i386 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libmpdec3 i386 2.5.1-1 [91.9 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 libreadline8 i386 8.1-1 [173 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 libpython3.9-stdlib i386 3.9.2-1 [1703 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 python3.9 i386 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 libpython3-stdlib i386 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 python3 i386 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-7 [8775 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 python3-distutils all 3.9.2-1 [143 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 libblas3 i386 3.9.0-3 [147 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 libblas-dev i386 3.9.0-3 [157 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 libexpat1-dev i386 2.2.10-2 [147 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 libgfortran5 i386 10.2.1-6 [643 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 52 http://deb.debian.org/debian bullseye/main i386 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 53 http://deb.debian.org/debian bullseye/main i386 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 54 http://deb.debian.org/debian bullseye/main i386 liblapack3 i386 3.9.0-3 [1960 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 liblbfgsb0 i386 3.0+dfsg.3-9 [28.4 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 libpython3.9 i386 3.9.2-1 [1715 kB] Get: 57 http://deb.debian.org/debian bullseye/main i386 libpython3.9-dev i386 3.9.2-1 [3822 kB] Get: 58 http://deb.debian.org/debian bullseye/main i386 libpython3-dev i386 3.9.2-3 [21.7 kB] Get: 59 http://deb.debian.org/debian bullseye/main i386 python3-all i386 3.9.2-3 [1060 B] Get: 60 http://deb.debian.org/debian bullseye/main i386 python3-decorator all 4.4.2-2 [15.8 kB] Get: 61 http://deb.debian.org/debian bullseye/main i386 zlib1g-dev i386 1:1.2.11.dfsg-2 [194 kB] Get: 62 http://deb.debian.org/debian bullseye/main i386 python3.9-dev i386 3.9.2-1 [515 kB] Get: 63 http://deb.debian.org/debian bullseye/main i386 python3-dev i386 3.9.2-3 [24.8 kB] Get: 64 http://deb.debian.org/debian bullseye/main i386 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 65 http://deb.debian.org/debian bullseye/main i386 python3-markdown all 3.3.4-1 [71.4 kB] Get: 66 http://deb.debian.org/debian bullseye/main i386 python3-numpy i386 1:1.19.5-1 [3600 kB] Get: 67 http://deb.debian.org/debian bullseye/main i386 python3-scipy i386 1.6.0-2 [11.9 MB] Get: 68 http://deb.debian.org/debian bullseye/main i386 python3-six all 1.16.0-1 [17.1 kB] Get: 69 http://deb.debian.org/debian bullseye/main i386 python3-theano i386 1.0.5+dfsg-2 [2105 kB] Fetched 52.2 MB in 15s (3525 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-7_i386.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../1-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_i386.deb ... 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Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20542 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_i386.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:i386. 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(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20963 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_i386.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.39-3_i386.deb ... 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Unpacking libpython3.9:i386 (3.9.2-1) ... Selecting previously unselected package libpython3.9-dev:i386. Preparing to unpack .../40-libpython3.9-dev_3.9.2-1_i386.deb ... Unpacking libpython3.9-dev:i386 (3.9.2-1) ... Selecting previously unselected package libpython3-dev:i386. Preparing to unpack .../41-libpython3-dev_3.9.2-3_i386.deb ... Unpacking libpython3-dev:i386 (3.9.2-3) ... Selecting previously unselected package python3-all. Preparing to unpack .../42-python3-all_3.9.2-3_i386.deb ... Unpacking python3-all (3.9.2-3) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../43-python3-decorator_4.4.2-2_all.deb ... Unpacking python3-decorator (4.4.2-2) ... Selecting previously unselected package zlib1g-dev:i386. Preparing to unpack .../44-zlib1g-dev_1%3a1.2.11.dfsg-2_i386.deb ... Unpacking zlib1g-dev:i386 (1:1.2.11.dfsg-2) ... Selecting previously unselected package python3.9-dev. Preparing to unpack .../45-python3.9-dev_3.9.2-1_i386.deb ... 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Selecting previously unselected package python3-theano. Preparing to unpack .../52-python3-theano_1.0.5+dfsg-2_i386.deb ... Unpacking python3-theano (1.0.5+dfsg-2) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:i386 (1.5.3-1) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:i386 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:i386 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:i386 (3.9.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libexpat1-dev:i386 (2.2.10-2) ... Setting up libsigsegv2:i386 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libgfortran5:i386 (10.2.1-6) ... Setting up zlib1g-dev:i386 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:i386 (0.0.7-1) ... Setting up libmpdec3:i386 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libelf1:i386 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:i386 (2.9.10+dfsg-6.7) ... Setting up libblas-dev:i386 (3.9.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up liblapack3:i386 (3.9.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libreadline8:i386 (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libpython3.9-stdlib:i386 (3.9.2-1) ... Setting up libpython3-stdlib:i386 (3.9.2-3) ... Setting up liblbfgsb0:i386 (3.0+dfsg.3-9) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libpython3.9:i386 (3.9.2-1) ... Setting up python3.9 (3.9.2-1) ... Setting up libpython3.9-dev:i386 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-six (1.16.0-1) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3.9-dev (3.9.2-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up libpython3-dev:i386 (3.9.2-3) ... Setting up python3-all (3.9.2-3) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-markdown (3.3.4-1) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-scipy (1.6.0-2) ... Setting up python3-theano (1.0.5+dfsg-2) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/deepnano-0.0+git20170813.e8a621e/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package deepnano dpkg-buildpackage: info: source version 0.0+git20170813.e8a621e-3.1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Thomas Goirand dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 fakeroot debian/rules clean dh clean --with python3 dh_clean debian/rules build dh build --with python3 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/deepnano-0.0+git20170813.e8a621e' dh_auto_build python3 -m markdown -f README.html README.md g++ -g -O2 -fdebug-prefix-map=/build/deepnano-0.0+git20170813.e8a621e=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -std=gnu++0x align_2d.cc -o align_2d align_2d.cc: In function 'Prob LoadProb(int)': align_2d.cc:16:8: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 16 | scanf("%lf %lf %lf %lf %lf", &p.p[0], &p.p[1], &p.p[2], &p.p[3], &p.n); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ align_2d.cc: In function 'Prob LoadProbC(int)': align_2d.cc:26:8: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 26 | scanf("%lf %lf %lf %lf %lf", &p.p[3], &p.p[2], &p.p[1], &p.p[0], &p.n); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ align_2d.cc: In function 'int main()': align_2d.cc:37:8: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 37 | scanf("%d", &tc); | ~~~~~^~~~~~~~~~~ align_2d.cc:44:8: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 44 | scanf("%d", &cc); | ~~~~~^~~~~~~~~~~ g++ -g -O2 -fdebug-prefix-map=/build/deepnano-0.0+git20170813.e8a621e=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -std=gnu++0x training/realign.cc -o realign training/realign.cc: In function 'int main()': training/realign.cc:58:8: warning: ignoring return value of 'int scanf(const char*, ...)' declared with attribute 'warn_unused_result' [-Wunused-result] 58 | scanf("%s\n", ss); | ~~~~~^~~~~~~~~~~~ make[1]: Leaving directory '/build/deepnano-0.0+git20170813.e8a621e' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3 dh_testroot dh_prep dh_install dh_installdocs dh_installchangelogs dh_installman dh_python3 dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms-arch make[1]: Entering directory '/build/deepnano-0.0+git20170813.e8a621e' dh_fixperms -a for bin in debian/bin/* ; do \ script=`basename ${bin} | sed 's/^deepnano_//'`.py ; \ chmod +x debian/*/usr/share/*/${script} ; \ done make[1]: Leaving directory '/build/deepnano-0.0+git20170813.e8a621e' dh_fixperms -Ndeepnano dh_missing dh_dwz dh_strip dh_makeshlibs dh_shlibdeps dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'deepnano-data' in '../deepnano-data_0.0+git20170813.e8a621e-3.1_all.deb'. dpkg-deb: building package 'deepnano-dbgsym' in '../deepnano-dbgsym_0.0+git20170813.e8a621e-3.1_i386.deb'. dpkg-deb: building package 'deepnano' in '../deepnano_0.0+git20170813.e8a621e-3.1_i386.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../deepnano_0.0+git20170813.e8a621e-3.1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/15631 and its subdirectories I: Current time: Sat Jul 10 09:37:59 -12 2021 I: pbuilder-time-stamp: 1625953079 Sat Jul 10 21:38:01 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos6-i386.debian.net. Sat Jul 10 21:38:01 UTC 2021 I: Preparing to do remote build '2' on ionos6-i386.debian.net. Sat Jul 10 21:38:59 UTC 2021 I: Deleting $TMPDIR on ionos6-i386.debian.net. Sat Jul 10 21:39:00 UTC 2021 I: deepnano_0.0+git20170813.e8a621e-3.1_i386.changes: Format: 1.8 Date: Sun, 03 Nov 2019 17:22:33 +0100 Source: deepnano Binary: deepnano deepnano-data deepnano-dbgsym Architecture: all i386 Version: 0.0+git20170813.e8a621e-3.1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Thomas Goirand Description: deepnano - alternative basecaller for MinION reads of genomic sequences deepnano-data - alternative basecaller for MinION reads of genomic sequences (dat Closes: 936381 943005 Changes: deepnano (0.0+git20170813.e8a621e-3.1) unstable; urgency=medium . * Non-maintainer upload. * Add py3-compat.patch. * Switched package to Python 3 (Closes: #936381, #943005). Checksums-Sha1: f164bfa31801f72c11258d2f48bd5f8340a4584f 86096900 deepnano-data_0.0+git20170813.e8a621e-3.1_all.deb 56403ed0d87665df7f67c03bbb7b7c0a0cc3a3d1 142896 deepnano-dbgsym_0.0+git20170813.e8a621e-3.1_i386.deb e0f0cce9fccb726298047fe02396efae4e9f5367 6547 deepnano_0.0+git20170813.e8a621e-3.1_i386.buildinfo c90dc3e5bb118329ec91b679df32a24f8f107dc0 21256 deepnano_0.0+git20170813.e8a621e-3.1_i386.deb Checksums-Sha256: cc49c69675055fdcb940f62145a0c87f9a21f843d2f68cf4a05bc0346d6e23b7 86096900 deepnano-data_0.0+git20170813.e8a621e-3.1_all.deb 33c03579415dc8b168e33fd3df964e185f8dd2b427b31398477ae8e45554f261 142896 deepnano-dbgsym_0.0+git20170813.e8a621e-3.1_i386.deb fa896ccecd40b7941e7345ff6bf314bd56a9935ec7b35d4864a516aabe3bbc91 6547 deepnano_0.0+git20170813.e8a621e-3.1_i386.buildinfo d15e35bfe9f1f9616c09ae51fa7a83abd8033ac58a33489bfd97cdb3e4cac926 21256 deepnano_0.0+git20170813.e8a621e-3.1_i386.deb Files: b743ae5ffb52d999de5dcc413adc3334 86096900 science optional deepnano-data_0.0+git20170813.e8a621e-3.1_all.deb ae8b920d4d2d17b8d787a4e807262c9b 142896 debug optional deepnano-dbgsym_0.0+git20170813.e8a621e-3.1_i386.deb 8b661a6f1192e5a80622ce2bc06c4c25 6547 science optional deepnano_0.0+git20170813.e8a621e-3.1_i386.buildinfo b16f682fe11445e6126044301f111655 21256 science optional deepnano_0.0+git20170813.e8a621e-3.1_i386.deb Sat Jul 10 21:39:01 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.gPPxMLwNis/deepnano_0.0+git20170813.e8a621e-3.1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.gPPxMLwNis/deepnano_0.0+git20170813.e8a621e-3.1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.gPPxMLwNis/deepnano_0.0+git20170813.e8a621e-3.1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.gPPxMLwNis/b1/deepnano_0.0+git20170813.e8a621e-3.1_i386.changes /srv/reproducible-results/rbuild-debian/tmp.gPPxMLwNis/b2/deepnano_0.0+git20170813.e8a621e-3.1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 1.262s) 1.262s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.992s) 0.992s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sat Jul 10 21:39:03 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Sat Jul 10 21:39:03 UTC 2021 I: deepnano from bullseye built successfully and reproducibly on i386. Sat Jul 10 21:39:05 UTC 2021 I: Submitting .buildinfo files to external archives: Sat Jul 10 21:39:05 UTC 2021 I: Submitting 8.0K b1/deepnano_0.0+git20170813.e8a621e-3.1_i386.buildinfo.asc Sat Jul 10 21:39:06 UTC 2021 I: Submitting 8.0K b2/deepnano_0.0+git20170813.e8a621e-3.1_i386.buildinfo.asc Sat Jul 10 21:39:07 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Jul 10 21:39:07 UTC 2021 I: Done submitting .buildinfo files. Sat Jul 10 21:39:07 UTC 2021 I: Removing signed deepnano_0.0+git20170813.e8a621e-3.1_i386.buildinfo.asc files: removed './b1/deepnano_0.0+git20170813.e8a621e-3.1_i386.buildinfo.asc' removed './b2/deepnano_0.0+git20170813.e8a621e-3.1_i386.buildinfo.asc'