Fri Jun 4 01:47:58 UTC 2021 I: starting to build cct/bullseye/i386 on jenkins on '2021-06-04 01:47' Fri Jun 4 01:47:58 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_5/12557/console.log Fri Jun 4 01:47:58 UTC 2021 I: Downloading source for bullseye/cct=1:1.0.0-1 --2021-06-04 01:47:59-- http://cdn-fastly.deb.debian.org/debian/pool/main/c/cct/cct_1.0.0-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1986 (1.9K) Saving to: ‘cct_1.0.0-1.dsc’ 0K . 100% 50.5M=0s 2021-06-04 01:47:59 (50.5 MB/s) - ‘cct_1.0.0-1.dsc’ saved [1986/1986] Fri Jun 4 01:47:59 UTC 2021 I: cct_1.0.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: cct Binary: cct, cct-examples Architecture: all Version: 1:1.0.0-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://stothard.afns.ualberta.ca/downloads/CCT/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/cct Vcs-Git: https://salsa.debian.org/med-team/cct.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: cct deb science optional arch=all cct-examples deb science optional arch=all Checksums-Sha1: 73a8f3ff387db109f1da82e17cc374e88ab9103c 81747048 cct_1.0.0.orig.tar.xz 13da841e17e5791e115d0fdc8f5b68e0feb63e48 11456 cct_1.0.0-1.debian.tar.xz Checksums-Sha256: d271425bcf3ad71ad475061b5066e90d45f7cccc38c658560603e148da05b5db 81747048 cct_1.0.0.orig.tar.xz d3173f0d38c23d5e1b14771327596c0d3186d3ad9d31595b54bd818f17b7be91 11456 cct_1.0.0-1.debian.tar.xz Files: 38e62faf3670c539d1e2f575935ff721 81747048 cct_1.0.0.orig.tar.xz 84d7cdb4e96100a2bcb77ae6fac594d5 11456 cct_1.0.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+VrdgRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGOUw/6A68osRCqTwThsgAPe+NpcF65ABFN9YIp Tq+Q8OtEhY7WuCPkZAWcMWWMsYJKYZxEEVZONTwUqW49hqSCdodEbatiBfeaA4z7 NtcuPxOts4TgqdN6C7z+elkxBTsUF6kaxGHJsGczMLdiXrOxq8LIbdXftyM3NUw7 RBZbRPBtoDbqmCCmRfIdtWr1N42FL+uySEG34UBjxkXmgB7qXy/9Awr6iGEXqWrW zpPCXx3/rn6O9Yz7hUR1MbNlB3y6xBzZyJeSaeakEOQPtyueGr+ukx8NEVUWxSb2 TErr7jUtpgFCgjc7crtXbHQ9qO4D1B4VoSHaGjtPOvMLjncJ+amAJSqQqOlcjWAd 2znAj7+f9Msu5QddQ+wFUH1xTaz9NUBZ8JORL5akrBD+6eKN/mLPMOUX5wy7wLhP dqYFKzPHjENlFxiz3NbH6dwjqwdkS97ixKzwyT+BTW4GjDmCB8WT++kdn1vC5FDz sqHTal4GUcECEynndyN6P1IOma4LANt2ZAKfkfu4joyRyn1weUfQcs8hBfxDJc+e sEQm66Aein5QcWUVnfnZhH7EVK31Fk1dEFkxz73cf1PJe74LO+t8t17c2Cx3mBvh 9/NzetawzMuO4OBj80JSeWOKwRnLq2w1Y8UJfhLER5uwxSMxXk4jRfNEjtMmrRpr G1zIJXs0LLE= =GpjZ -----END PGP SIGNATURE----- Fri Jun 4 01:47:59 UTC 2021 I: Checking whether the package is not for us Fri Jun 4 01:47:59 UTC 2021 I: Starting 1st build on remote node ionos12-i386.debian.net. Fri Jun 4 01:47:59 UTC 2021 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Fri Jun 4 01:59:42 UTC 2021 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jun 3 13:48:22 -12 2021 I: pbuilder-time-stamp: 1622771302 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [cct_1.0.0-1.dsc] I: copying [./cct_1.0.0.orig.tar.xz] I: copying [./cct_1.0.0-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.wDPaTEhT/trustedkeys.kbx': General error gpgv: Signature made Sun Oct 25 04:54:48 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./cct_1.0.0-1.dsc dpkg-source: info: extracting cct in cct-1.0.0 dpkg-source: info: unpacking cct_1.0.0.orig.tar.xz dpkg-source: info: unpacking cct_1.0.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying cgview_path.patch dpkg-source: info: applying testscripts.patch dpkg-source: info: applying fix_cgview_path.patch dpkg-source: info: applying conditionalize_blast_-Q_-D.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/28068/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=10' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='fe5b565d2c6f4ba9b9104740d3593899' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='28068' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.XnfJOrK126/pbuilderrc_pFZX --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.XnfJOrK126/b1 --logfile b1/build.log cct_1.0.0-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos12-i386 4.19.0-16-686-pae #1 SMP Debian 4.19.181-1 (2021-03-19) i686 GNU/Linux I: ls -l /bin total 5776 -rwxr-xr-x 1 root root 1367848 Feb 24 08:57 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 01:23 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Feb 7 02:38 more -rwsr-xr-x 1 root root 50720 Feb 7 02:38 mount -rwxr-xr-x 1 root root 13856 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Feb 24 08:57 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jun 1 21:26 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Feb 7 02:38 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 21:55 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30236 Feb 7 02:38 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/28068/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19674 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 18.6 MB of archives. After unpacking 67.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-7 [148 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-6 [8776 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Fetched 18.6 MB in 4s (4596 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19674 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_i386.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../01-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../03-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3_i386.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../07-libmagic1_1%3a5.39-3_i386.deb ... Unpacking libmagic1:i386 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.39-3_i386.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../09-gettext-base_0.21-4_i386.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../10-libsigsegv2_2.13-1_i386.deb ... Unpacking libsigsegv2:i386 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.18-5_i386.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.11.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.11.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.11.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.11.0-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../23-libelf1_0.183-1_i386.deb ... Unpacking libelf1:i386 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.13+20210201-1_i386.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:i386. Preparing to unpack .../25-libicu67_67.1-6_i386.deb ... Unpacking libicu67:i386 (67.1-6) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../26-libxml2_2.9.10+dfsg-6.7_i386.deb ... Unpacking libxml2:i386 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-4_i386.deb ... Unpacking gettext (0.21-4) ... 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Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/cct-1.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package cct dpkg-buildpackage: info: source version 1:1.0.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_install make[1]: Entering directory '/build/cct-1.0.0' dh_install mkdir -p debian/cct/usr/bin for scr in debian/cct/usr/share/cct/scripts/*.sh ; do \ binscr=`basename ${scr} .sh` ; \ ln -s /usr/share/cct/scripts/generic debian/cct/usr/bin/${binscr} ; \ done for scr in debian/cct/usr/share/cct/scripts/*.pl ; do \ binscr=`basename ${scr} .pl` ; \ ln -s /usr/share/cct/scripts/generic debian/cct/usr/bin/${binscr} ; \ done ln -s /etc/cct debian/cct/usr/share/cct/conf # Move "hidden" examples into example package for sample in `find debian -type d \( -name "sample_output" -o -name "test_input" \)` ; do \ base=`dirname ${sample} | sed 's#debian/cct#debian/cct-examples#'` ; \ mkdir -p ${base} ; \ mv ${sample} ${base} ; \ done for pl in `grep -Rl '#!/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done grep: debian/cct/usr/bin/build_cog_db: No such file or directory grep: debian/cct/usr/bin/process_test_projects: No such file or directory grep: debian/cct/usr/bin/create_zoomed_maps: No such file or directory grep: debian/cct/usr/bin/cgview_comparison_tool: No such file or directory grep: debian/cct/usr/bin/fetch_all_refseq_chloroplast_genomes: No such file or directory grep: debian/cct/usr/bin/remove_long_seqs: No such file or directory grep: debian/cct/usr/bin/fetch_refseq_bacterial_genomes_by_name: No such file or directory grep: debian/cct/usr/bin/build_blast_atlas_all_vs_all: No such file or directory grep: debian/cct/usr/bin/redraw_maps: No such file or directory grep: debian/cct/usr/bin/fetch_all_refseq_mitochondrial_genomes: No such file or directory grep: debian/cct/usr/bin/remove_short_seqs: No such file or directory grep: debian/cct/usr/bin/fetch_all_refseq_bacterial_genomes: No such file or directory grep: debian/cct/usr/bin/fetch_genome_by_accession: No such file or directory grep: debian/cct/usr/bin/convert_vcf_to_features: No such file or directory grep: debian/cct/usr/bin/build_blast_atlas: No such file or directory grep: debian/cct/usr/bin/ncbi_search: No such file or directory grep: debian/cct/usr/bin/process_sample_projects: No such file or directory grep: debian/cct/usr/bin/check_env: No such file or directory grep: debian/cct/usr/share/cct/conf: No such file or directory make[1]: Leaving directory '/build/cct-1.0.0' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dpkg-gencontrol: warning: Depends field of package cct-examples: substitution variable ${perl:Depends} used, but is not defined dh_md5sums dh_builddeb dpkg-deb: building package 'cct-examples' in '../cct-examples_1.0.0-1_all.deb'. dpkg-deb: building package 'cct' in '../cct_1.0.0-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../cct_1.0.0-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/28068 and its subdirectories I: Current time: Thu Jun 3 13:59:40 -12 2021 I: pbuilder-time-stamp: 1622771980 Fri Jun 4 01:59:43 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos6-i386.debian.net. Fri Jun 4 01:59:43 UTC 2021 I: Preparing to do remote build '2' on ionos6-i386.debian.net. Fri Jun 4 02:00:57 UTC 2021 I: Deleting $TMPDIR on ionos6-i386.debian.net. Fri Jun 4 02:00:57 UTC 2021 I: cct_1.0.0-1_i386.changes: Format: 1.8 Date: Sun, 25 Oct 2020 17:48:06 +0100 Source: cct Binary: cct cct-examples Architecture: all Version: 1:1.0.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: cct - visually comparing bacterial, plasmid, chloroplast, or mitochondr cct-examples - example data for testing the package cct Changes: cct (1:1.0.0-1) unstable; urgency=medium . * New upstream version (upstream is now using proper release tags - thus we need an epoch) * Remove legacy_blast from upstream source * Adapt patches * Move hidden examples into example package Checksums-Sha1: 262333b43e0bbe6dc47524490a30404afb4c3337 41895448 cct-examples_1.0.0-1_all.deb 19fb3144cae6971944251046d63d622d8252326d 36332648 cct_1.0.0-1_all.deb 403d71300b5d02527c33c5e3661d08696ed7cbeb 4802 cct_1.0.0-1_i386.buildinfo Checksums-Sha256: aee7ea84c826b318e159983bd8d4b3906a2f790d9a373e817a75edb22dc4cf66 41895448 cct-examples_1.0.0-1_all.deb 7b009b1c5e43c3d07ea4bd8d4189886a86fccaf9ecbd3ff7fddf28cbc3d83fe9 36332648 cct_1.0.0-1_all.deb 9b2c39dba74652781daa22d4565dd512d888299df11d454dc6b21df7ff1bdd21 4802 cct_1.0.0-1_i386.buildinfo Files: 071710ae07a7214bb8642e71a0072e1f 41895448 science optional cct-examples_1.0.0-1_all.deb 5cf2f09dfab508368eca2b74f91c2f16 36332648 science optional cct_1.0.0-1_all.deb 17d55b5f05fd37cdee301c427fa9b0d8 4802 science optional cct_1.0.0-1_i386.buildinfo Fri Jun 4 02:00:59 UTC 2021 I: diffoscope 172 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.XnfJOrK126/cct_1.0.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.XnfJOrK126/cct_1.0.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.XnfJOrK126/cct_1.0.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.XnfJOrK126/b1/cct_1.0.0-1_i386.changes /srv/reproducible-results/rbuild-debian/tmp.XnfJOrK126/b2/cct_1.0.0-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 1.291s) 1.291s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.933s) 0.933s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Fri Jun 4 02:19:58 UTC 2021 I: diffoscope 172 found no differences in the changes files, and a .buildinfo file also exists. Fri Jun 4 02:19:58 UTC 2021 I: cct from bullseye built successfully and reproducibly on i386. Fri Jun 4 02:19:59 UTC 2021 I: Submitting .buildinfo files to external archives: Fri Jun 4 02:19:59 UTC 2021 I: Submitting 8.0K b1/cct_1.0.0-1_i386.buildinfo.asc Fri Jun 4 02:20:00 UTC 2021 I: Submitting 8.0K b2/cct_1.0.0-1_i386.buildinfo.asc Fri Jun 4 02:20:01 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Jun 4 02:20:01 UTC 2021 I: Done submitting .buildinfo files. Fri Jun 4 02:20:01 UTC 2021 I: Removing signed cct_1.0.0-1_i386.buildinfo.asc files: removed './b1/cct_1.0.0-1_i386.buildinfo.asc' removed './b2/cct_1.0.0-1_i386.buildinfo.asc'