Fri Aug 13 01:08:37 UTC 2021 I: starting to build augur/bullseye/i386 on jenkins on '2021-08-13 01:08' Fri Aug 13 01:08:37 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/i386_15/18046/console.log Fri Aug 13 01:08:37 UTC 2021 I: Downloading source for bullseye/augur=11.0.0-1 --2021-08-13 01:08:38-- http://cdn-fastly.deb.debian.org/debian/pool/main/a/augur/augur_11.0.0-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2379 (2.3K) Saving to: ‘augur_11.0.0-1.dsc’ 0K .. 100% 115M=0s 2021-08-13 01:08:38 (115 MB/s) - ‘augur_11.0.0-1.dsc’ saved [2379/2379] Fri Aug 13 01:08:38 UTC 2021 I: augur_11.0.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: augur Binary: augur Architecture: all Version: 11.0.0-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Nilesh Patra Homepage: https://github.com/nextstrain/augur Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/augur Vcs-Git: https://salsa.debian.org/med-team/augur.git Testsuite: autopkgtest Testsuite-Triggers: python3-all, python3-freezegun, python3-pytest, python3-pytest-mock Build-Depends: debhelper-compat (= 13), dh-python, mafft, python3-all, python3-setuptools, python3-pytest , python3-pytest-mock , python3-biopython , python3-jsonschema , python3-packaging , python3-pandas , python3-treetime , python3-freezegun , vcftools Package-List: augur deb science optional arch=all Checksums-Sha1: 1325ad044a87ac03a6189db188a5dc5b68c93445 11187287 augur_11.0.0.orig.tar.gz 55f903c1e2ac4485e637b3095cdcd739afd6ec1a 14024 augur_11.0.0-1.debian.tar.xz Checksums-Sha256: bc1a2026adb0f1e9de9d04c44a1b23885bea2caf49594971f4765d1549b91ad7 11187287 augur_11.0.0.orig.tar.gz 7ba7cb0bb348ac962f5b7b460c8c63249188c3907bedda54cc7a3daccb1685d5 14024 augur_11.0.0-1.debian.tar.xz Files: 129ecfff33418ee86bd41d14ede4e8dd 11187287 augur_11.0.0.orig.tar.gz 9d6ecaf7291415124508a776c06025f2 14024 augur_11.0.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmAPrpYUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafGhshAAi4WneziWVHM6a10wOKLGkZ5z1oaF 9o8bUp6dAS9WVyJ32fRxstqHEco32uDkO87rrUOUhHuy+CrH4oc2kv3/Aa0aPjPq liKq8wFYXzGvQBS59DTaIJvWkUB0V+UJ9HILqUZvPzwAPmlu41yhs1I89j0O6Jba aI7ps6lBxtb3wX4i0ypS/Ad/FBZETsI2i48mhmWFvjAaHS6UUo02nCR7g6ZM9sx3 RRzuDJ2l7nf9CuBKbfIhvs21GNnjw4PTqn1POwgOgQGNLndYNxc6/7bKijsgB2us WO0xF5/rdZnvpt3RtTTo5MVZnToAm5inA6/gNlu0npDyi5v7Gljyec5W4ZF4vhfB 2cT4ZdIVudTMVVMyr8nl2dR12y1+IPJWrY8xdY7y7X0pXpQBPOSzJa/21uVe10lx P6RlpqN6z2ZwWsTKRVGDPKRJF4LX5tVuqO0h6/S29Mrqc2EkJ0XclF0O5PVweCqm cUr8IbVdbl9XXt/40N8yHyTjpskAKLx6YMs3LnzDvCDTVAqpS3KWMaC+9jVWVNj5 I+AMAXlrVCJPSOWgOJhTpQaYDDgMyb1jQWye61GkMq24RF6niZWlJIp4kOhPb6XK P7iD6093FKotvBf/21nzYmx7+DCWqFoLlEwWW5GEbpTpgDEyOew0mb6QcvYfGUlD mVqVRBmbEf1vBTI= =45+B -----END PGP SIGNATURE----- Fri Aug 13 01:08:38 UTC 2021 I: Checking whether the package is not for us Fri Aug 13 01:08:38 UTC 2021 I: Starting 1st build on remote node ionos12-i386.debian.net. Fri Aug 13 01:08:38 UTC 2021 I: Preparing to do remote build '1' on ionos12-i386.debian.net. Fri Aug 13 01:16:53 UTC 2021 I: Deleting $TMPDIR on ionos12-i386.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Aug 12 13:08:46 -12 2021 I: pbuilder-time-stamp: 1628816926 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: using eatmydata during job I: Copying source file I: copying [augur_11.0.0-1.dsc] I: copying [./augur_11.0.0.orig.tar.gz] I: copying [./augur_11.0.0-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.lIr2ppys/trustedkeys.kbx': General error gpgv: Signature made Mon Jan 25 17:54:30 2021 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./augur_11.0.0-1.dsc dpkg-source: info: extracting augur in augur-11.0.0 dpkg-source: info: unpacking augur_11.0.0.orig.tar.gz dpkg-source: info: unpacking augur_11.0.0-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/31652/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='i386' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/root' HOST_ARCH='i386' IFS=' ' INVOCATION_ID='afc703fc63ae4db78605fa91baf2763f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' LD_LIBRARY_PATH='/usr/lib/libeatmydata' LD_PRELOAD='libeatmydata.so' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='31652' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ksFsTuWg1d/pbuilderrc_dMpY --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ksFsTuWg1d/b1 --logfile b1/build.log augur_11.0.0-1.dsc' SUDO_GID='112' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://78.137.99.97:3128' I: uname -a Linux ionos12-i386 4.19.0-17-686-pae #1 SMP Debian 4.19.194-3 (2021-07-18) i686 GNU/Linux I: ls -l /bin total 5848 -rwxr-xr-x 1 root root 1367848 Aug 4 08:25 bash -rwxr-xr-x 3 root root 38280 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 38280 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 17768 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 38824 Sep 22 2020 cat -rwxr-xr-x 1 root root 71624 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 67528 Sep 22 2020 chmod -rwxr-xr-x 1 root root 75752 Sep 22 2020 chown -rwxr-xr-x 1 root root 157960 Sep 22 2020 cp -rwxr-xr-x 1 root root 128724 Dec 10 2020 dash -rwxr-xr-x 1 root root 124904 Sep 22 2020 date -rwxr-xr-x 1 root root 92172 Sep 22 2020 dd -rwxr-xr-x 1 root root 100752 Sep 22 2020 df -rwxr-xr-x 1 root root 153964 Sep 22 2020 dir -rwxr-xr-x 1 root root 83644 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 34664 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 34664 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 71928 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 30112 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 210488 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 100952 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 21916 Nov 6 2019 hostname -rwxr-xr-x 1 root root 83980 Sep 22 2020 ln -rwxr-xr-x 1 root root 55572 Feb 7 2020 login -rwxr-xr-x 1 root root 153964 Sep 22 2020 ls -rwxr-xr-x 1 root root 153124 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 96328 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 79912 Sep 22 2020 mknod -rwxr-xr-x 1 root root 47048 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 58920 Jul 28 07:09 more -rwsr-xr-x 1 root root 50720 Jul 28 07:09 mount -rwxr-xr-x 1 root root 13856 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 157996 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 38824 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 46984 Sep 22 2020 readlink -rwxr-xr-x 1 root root 75720 Sep 22 2020 rm -rwxr-xr-x 1 root root 46984 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 22292 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 125036 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 10 19:48 sh -> dash -rwxr-xr-x 1 root root 34696 Sep 22 2020 sleep -rwxr-xr-x 1 root root 83880 Sep 22 2020 stty -rwsr-xr-x 1 root root 79396 Jul 28 07:09 su -rwxr-xr-x 1 root root 34696 Sep 22 2020 sync -rwxr-xr-x 1 root root 602584 Feb 16 21:55 tar -rwxr-xr-x 1 root root 13860 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 108520 Sep 22 2020 touch -rwxr-xr-x 1 root root 34664 Sep 22 2020 true -rwxr-xr-x 1 root root 17768 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30236 Jul 28 07:09 umount -rwxr-xr-x 1 root root 34664 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 153964 Sep 22 2020 vdir -rwxr-xr-x 1 root root 63024 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/31652/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: i386 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, mafft, python3-all, python3-setuptools, python3-pytest, python3-pytest-mock, python3-biopython, python3-jsonschema, python3-packaging, python3-pandas, python3-treetime, python3-freezegun, vcftools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on mafft; however: Package mafft is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-mock; however: Package python3-pytest-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-biopython; however: Package python3-biopython is not installed. pbuilder-satisfydepends-dummy depends on python3-jsonschema; however: Package python3-jsonschema is not installed. pbuilder-satisfydepends-dummy depends on python3-packaging; however: Package python3-packaging is not installed. pbuilder-satisfydepends-dummy depends on python3-pandas; however: Package python3-pandas is not installed. pbuilder-satisfydepends-dummy depends on python3-treetime; however: Package python3-treetime is not installed. pbuilder-satisfydepends-dummy depends on python3-freezegun; however: Package python3-freezegun is not installed. pbuilder-satisfydepends-dummy depends on vcftools; however: Package vcftools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libgfortran5{a} libicu67{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libpipeline1{a} libpng16-16{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} m4{a} mafft{a} mailcap{a} man-db{a} media-types{a} mime-support{a} po-debconf{a} python3{a} python3-all{a} python3-attr{a} python3-biopython{a} python3-dateutil{a} python3-decorator{a} python3-distutils{a} python3-freezegun{a} python3-importlib-metadata{a} python3-iniconfig{a} python3-jsonschema{a} python3-lib2to3{a} python3-minimal{a} python3-more-itertools{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pkg-resources{a} python3-pluggy{a} python3-py{a} python3-pyparsing{a} python3-pyrsistent{a} python3-pytest{a} python3-pytest-mock{a} python3-reportlab{a} python3-reportlab-accel{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3-toml{a} python3-treetime{a} python3-tz{a} python3-zipp{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} vcftools{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl libwww-perl lynx ncbi-blast+ python-biopython-doc python3-bottleneck python3-bs4 python3-html5lib python3-jinja2 python3-lxml python3-matplotlib python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pygments python3-renderpm python3-tables python3-xlwt ruby tabix wget 0 packages upgraded, 102 newly installed, 0 to remove and 0 not upgraded. Need to get 56.0 MB of archives. After unpacking 248 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main i386 bsdextrautils i386 2.36.1-8 [149 kB] Get: 2 http://deb.debian.org/debian bullseye/main i386 libuchardet0 i386 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main i386 groff-base i386 1.22.4-6 [952 kB] Get: 4 http://deb.debian.org/debian bullseye/main i386 libpipeline1 i386 1.5.3-1 [36.8 kB] Get: 5 http://deb.debian.org/debian bullseye/main i386 man-db i386 2.9.4-2 [1367 kB] Get: 6 http://deb.debian.org/debian bullseye/main i386 libpython3.9-minimal i386 3.9.2-1 [801 kB] Get: 7 http://deb.debian.org/debian bullseye/main i386 libexpat1 i386 2.2.10-2 [98.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main i386 python3.9-minimal i386 3.9.2-1 [1956 kB] Get: 9 http://deb.debian.org/debian bullseye/main i386 python3-minimal i386 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main i386 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main i386 mailcap all 3.69 [31.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main i386 mime-support all 3.66 [10.9 kB] Get: 13 http://deb.debian.org/debian bullseye/main i386 libmpdec3 i386 2.5.1-1 [91.9 kB] Get: 14 http://deb.debian.org/debian bullseye/main i386 readline-common all 8.1-1 [73.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main i386 libreadline8 i386 8.1-1 [173 kB] Get: 16 http://deb.debian.org/debian bullseye/main i386 libpython3.9-stdlib i386 3.9.2-1 [1703 kB] Get: 17 http://deb.debian.org/debian bullseye/main i386 python3.9 i386 3.9.2-1 [466 kB] Get: 18 http://deb.debian.org/debian bullseye/main i386 libpython3-stdlib i386 3.9.2-3 [21.4 kB] Get: 19 http://deb.debian.org/debian bullseye/main i386 python3 i386 3.9.2-3 [37.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main i386 sensible-utils all 0.0.14 [14.8 kB] Get: 21 http://deb.debian.org/debian bullseye/main i386 libmagic-mgc i386 1:5.39-3 [273 kB] Get: 22 http://deb.debian.org/debian bullseye/main i386 libmagic1 i386 1:5.39-3 [133 kB] Get: 23 http://deb.debian.org/debian bullseye/main i386 file i386 1:5.39-3 [69.0 kB] Get: 24 http://deb.debian.org/debian bullseye/main i386 gettext-base i386 0.21-4 [176 kB] Get: 25 http://deb.debian.org/debian bullseye/main i386 libsigsegv2 i386 2.13-1 [35.1 kB] Get: 26 http://deb.debian.org/debian bullseye/main i386 m4 i386 1.4.18-5 [206 kB] Get: 27 http://deb.debian.org/debian bullseye/main i386 autoconf all 2.69-14 [313 kB] Get: 28 http://deb.debian.org/debian bullseye/main i386 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 29 http://deb.debian.org/debian bullseye/main i386 automake all 1:1.16.3-2 [814 kB] Get: 30 http://deb.debian.org/debian bullseye/main i386 autopoint all 0.21-4 [510 kB] Get: 31 http://deb.debian.org/debian bullseye/main i386 libdebhelper-perl all 13.3.4 [189 kB] Get: 32 http://deb.debian.org/debian bullseye/main i386 libtool all 2.4.6-15 [513 kB] Get: 33 http://deb.debian.org/debian bullseye/main i386 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian bullseye/main i386 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian bullseye/main i386 libsub-override-perl all 0.09-2 [10.2 kB] Get: 36 http://deb.debian.org/debian bullseye/main i386 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 37 http://deb.debian.org/debian bullseye/main i386 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 38 http://deb.debian.org/debian bullseye/main i386 libelf1 i386 0.183-1 [171 kB] Get: 39 http://deb.debian.org/debian bullseye/main i386 dwz i386 0.13+20210201-1 [179 kB] Get: 40 http://deb.debian.org/debian bullseye/main i386 libicu67 i386 67.1-7 [8775 kB] Get: 41 http://deb.debian.org/debian bullseye/main i386 libxml2 i386 2.9.10+dfsg-6.7 [728 kB] Get: 42 http://deb.debian.org/debian bullseye/main i386 gettext i386 0.21-4 [1322 kB] Get: 43 http://deb.debian.org/debian bullseye/main i386 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 44 http://deb.debian.org/debian bullseye/main i386 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian bullseye/main i386 debhelper all 13.3.4 [1049 kB] Get: 46 http://deb.debian.org/debian bullseye/main i386 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 47 http://deb.debian.org/debian bullseye/main i386 python3-distutils all 3.9.2-1 [143 kB] Get: 48 http://deb.debian.org/debian bullseye/main i386 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 49 http://deb.debian.org/debian bullseye/main i386 libblas3 i386 3.9.0-3 [147 kB] Get: 50 http://deb.debian.org/debian bullseye/main i386 libbrotli1 i386 1.0.9-2+b2 [286 kB] Get: 51 http://deb.debian.org/debian bullseye/main i386 libmd0 i386 1.0.3-3 [28.9 kB] Get: 52 http://deb.debian.org/debian bullseye/main i386 libbsd0 i386 0.11.3-1 [111 kB] Get: 53 http://deb.debian.org/debian bullseye/main i386 libdeflate0 i386 1.7-1 [48.4 kB] Get: 54 http://deb.debian.org/debian bullseye/main i386 libpng16-16 i386 1.6.37-3 [303 kB] Get: 55 http://deb.debian.org/debian bullseye/main i386 libfreetype6 i386 2.10.4+dfsg-1 [429 kB] Get: 56 http://deb.debian.org/debian bullseye/main i386 libgfortran5 i386 10.2.1-6 [643 kB] Get: 57 http://deb.debian.org/debian bullseye/main i386 libimagequant0 i386 2.12.2-1.1 [32.4 kB] Get: 58 http://deb.debian.org/debian bullseye/main i386 libjbig0 i386 2.1-3.1+b2 [31.5 kB] Get: 59 http://deb.debian.org/debian bullseye/main i386 libjpeg62-turbo i386 1:2.0.6-4 [160 kB] Get: 60 http://deb.debian.org/debian bullseye/main i386 liblapack3 i386 3.9.0-3 [1960 kB] Get: 61 http://deb.debian.org/debian bullseye/main i386 liblbfgsb0 i386 3.0+dfsg.3-9 [28.4 kB] Get: 62 http://deb.debian.org/debian bullseye/main i386 liblcms2-2 i386 2.12~rc1-2 [161 kB] Get: 63 http://deb.debian.org/debian bullseye/main i386 libwebp6 i386 0.6.1-2.1 [269 kB] Get: 64 http://deb.debian.org/debian bullseye/main i386 libtiff5 i386 4.2.0-1 [305 kB] Get: 65 http://deb.debian.org/debian bullseye/main i386 libwebpdemux2 i386 0.6.1-2.1 [88.2 kB] Get: 66 http://deb.debian.org/debian bullseye/main i386 libwebpmux3 i386 0.6.1-2.1 [99.0 kB] Get: 67 http://deb.debian.org/debian bullseye/main i386 libxau6 i386 1:1.0.9-1 [20.0 kB] Get: 68 http://deb.debian.org/debian bullseye/main i386 libxdmcp6 i386 1:1.1.2-3 [26.7 kB] Get: 69 http://deb.debian.org/debian bullseye/main i386 libxcb1 i386 1.14-3 [144 kB] Get: 70 http://deb.debian.org/debian bullseye/main i386 mafft i386 7.475-1 [984 kB] Get: 71 http://deb.debian.org/debian bullseye/main i386 python3-all i386 3.9.2-3 [1060 B] Get: 72 http://deb.debian.org/debian bullseye/main i386 python3-attr all 20.3.0-1 [52.9 kB] Get: 73 http://deb.debian.org/debian bullseye/main i386 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 74 http://deb.debian.org/debian bullseye/main i386 python3-numpy i386 1:1.19.5-1 [3600 kB] Get: 75 http://deb.debian.org/debian bullseye/main i386 python3-reportlab-accel i386 3.5.59-2 [39.9 kB] Get: 76 http://deb.debian.org/debian bullseye/main i386 python3-pil i386 8.1.2+dfsg-0.3 [445 kB] Get: 77 http://deb.debian.org/debian bullseye/main i386 python3-reportlab all 3.5.59-2 [575 kB] Get: 78 http://deb.debian.org/debian bullseye/main i386 python3-biopython i386 1.78+dfsg-4 [1401 kB] Get: 79 http://deb.debian.org/debian bullseye/main i386 python3-six all 1.16.0-2 [17.5 kB] Get: 80 http://deb.debian.org/debian bullseye/main i386 python3-dateutil all 2.8.1-6 [79.2 kB] Get: 81 http://deb.debian.org/debian bullseye/main i386 python3-decorator all 4.4.2-2 [15.8 kB] Get: 82 http://deb.debian.org/debian bullseye/main i386 python3-freezegun all 0.3.15-1 [13.4 kB] Get: 83 http://deb.debian.org/debian bullseye/main i386 python3-more-itertools all 4.2.0-3 [42.7 kB] Get: 84 http://deb.debian.org/debian bullseye/main i386 python3-zipp all 1.0.0-3 [6060 B] Get: 85 http://deb.debian.org/debian bullseye/main i386 python3-importlib-metadata all 1.6.0-2 [10.3 kB] Get: 86 http://deb.debian.org/debian bullseye/main i386 python3-iniconfig all 1.1.1-1 [6308 B] Get: 87 http://deb.debian.org/debian bullseye/main i386 python3-setuptools all 52.0.0-4 [366 kB] Get: 88 http://deb.debian.org/debian bullseye/main i386 python3-pyrsistent i386 0.15.5-1+b3 [59.3 kB] Get: 89 http://deb.debian.org/debian bullseye/main i386 python3-jsonschema all 3.2.0-3 [46.3 kB] Get: 90 http://deb.debian.org/debian bullseye/main i386 python3-pyparsing all 2.4.7-1 [109 kB] Get: 91 http://deb.debian.org/debian bullseye/main i386 python3-packaging all 20.9-2 [33.5 kB] Get: 92 http://deb.debian.org/debian bullseye/main i386 python3-tz all 2021.1-1 [34.8 kB] Get: 93 http://deb.debian.org/debian bullseye/main i386 python3-pandas-lib i386 1.1.5+dfsg-2 [3182 kB] Get: 94 http://deb.debian.org/debian bullseye/main i386 python3-pandas all 1.1.5+dfsg-2 [2096 kB] Get: 95 http://deb.debian.org/debian bullseye/main i386 python3-pluggy all 0.13.0-6 [22.3 kB] Get: 96 http://deb.debian.org/debian bullseye/main i386 python3-py all 1.10.0-1 [94.2 kB] Get: 97 http://deb.debian.org/debian bullseye/main i386 python3-toml all 0.10.1-1 [15.9 kB] Get: 98 http://deb.debian.org/debian bullseye/main i386 python3-pytest all 6.0.2-2 [211 kB] Get: 99 http://deb.debian.org/debian bullseye/main i386 python3-pytest-mock all 1.10.4-4 [18.6 kB] Get: 100 http://deb.debian.org/debian bullseye/main i386 python3-scipy i386 1.6.0-2 [11.9 MB] Get: 101 http://deb.debian.org/debian bullseye/main i386 python3-treetime all 0.8.1-1 [105 kB] Get: 102 http://deb.debian.org/debian bullseye/main i386 vcftools i386 0.1.16-2 [458 kB] Fetched 56.0 MB in 8s (7336 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19675 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_i386.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:i386. Preparing to unpack .../1-libuchardet0_0.0.7-1_i386.deb ... Unpacking libuchardet0:i386 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_i386.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:i386. Preparing to unpack .../3-libpipeline1_1.5.3-1_i386.deb ... Unpacking libpipeline1:i386 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_i386.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:i386. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_i386.deb ... Unpacking libpython3.9-minimal:i386 (3.9.2-1) ... Selecting previously unselected package libexpat1:i386. Preparing to unpack .../6-libexpat1_2.2.10-2_i386.deb ... Unpacking libexpat1:i386 (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_i386.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:i386 (3.9.2-1) ... Setting up libexpat1:i386 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20542 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_i386.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.69_all.deb ... Unpacking mailcap (3.69) ... Selecting previously unselected package mime-support. Preparing to unpack .../3-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libmpdec3:i386. Preparing to unpack .../4-libmpdec3_2.5.1-1_i386.deb ... Unpacking libmpdec3:i386 (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:i386. Preparing to unpack .../6-libreadline8_8.1-1_i386.deb ... Unpacking libreadline8:i386 (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:i386. Preparing to unpack .../7-libpython3.9-stdlib_3.9.2-1_i386.deb ... Unpacking libpython3.9-stdlib:i386 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../8-python3.9_3.9.2-1_i386.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:i386. Preparing to unpack .../9-libpython3-stdlib_3.9.2-3_i386.deb ... Unpacking libpython3-stdlib:i386 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20987 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_i386.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.39-3_i386.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:i386. Preparing to unpack .../03-libmagic1_1%3a5.39-3_i386.deb ... Unpacking libmagic1:i386 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.39-3_i386.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-4_i386.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:i386. Preparing to unpack .../06-libsigsegv2_2.13-1_i386.deb ... Unpacking libsigsegv2:i386 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../07-m4_1.4.18-5_i386.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../08-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../09-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../10-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../11-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../12-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../13-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../14-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../15-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../16-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../17-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../18-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:i386. Preparing to unpack .../19-libelf1_0.183-1_i386.deb ... Unpacking libelf1:i386 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../20-dwz_0.13+20210201-1_i386.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:i386. Preparing to unpack .../21-libicu67_67.1-7_i386.deb ... Unpacking libicu67:i386 (67.1-7) ... Selecting previously unselected package libxml2:i386. Preparing to unpack .../22-libxml2_2.9.10+dfsg-6.7_i386.deb ... Unpacking libxml2:i386 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../23-gettext_0.21-4_i386.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../24-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../25-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../26-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../27-python3-lib2to3_3.9.2-1_all.deb ... Unpacking python3-lib2to3 (3.9.2-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../28-python3-distutils_3.9.2-1_all.deb ... Unpacking python3-distutils (3.9.2-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../29-dh-python_4.20201102+nmu1_all.deb ... Unpacking dh-python (4.20201102+nmu1) ... Selecting previously unselected package libblas3:i386. Preparing to unpack .../30-libblas3_3.9.0-3_i386.deb ... Unpacking libblas3:i386 (3.9.0-3) ... Selecting previously unselected package libbrotli1:i386. Preparing to unpack .../31-libbrotli1_1.0.9-2+b2_i386.deb ... Unpacking libbrotli1:i386 (1.0.9-2+b2) ... Selecting previously unselected package libmd0:i386. Preparing to unpack .../32-libmd0_1.0.3-3_i386.deb ... Unpacking libmd0:i386 (1.0.3-3) ... Selecting previously unselected package libbsd0:i386. Preparing to unpack .../33-libbsd0_0.11.3-1_i386.deb ... Unpacking libbsd0:i386 (0.11.3-1) ... Selecting previously unselected package libdeflate0:i386. Preparing to unpack .../34-libdeflate0_1.7-1_i386.deb ... Unpacking libdeflate0:i386 (1.7-1) ... Selecting previously unselected package libpng16-16:i386. Preparing to unpack .../35-libpng16-16_1.6.37-3_i386.deb ... Unpacking libpng16-16:i386 (1.6.37-3) ... Selecting previously unselected package libfreetype6:i386. Preparing to unpack .../36-libfreetype6_2.10.4+dfsg-1_i386.deb ... Unpacking libfreetype6:i386 (2.10.4+dfsg-1) ... Selecting previously unselected package libgfortran5:i386. Preparing to unpack .../37-libgfortran5_10.2.1-6_i386.deb ... Unpacking libgfortran5:i386 (10.2.1-6) ... Selecting previously unselected package libimagequant0:i386. Preparing to unpack .../38-libimagequant0_2.12.2-1.1_i386.deb ... Unpacking libimagequant0:i386 (2.12.2-1.1) ... Selecting previously unselected package libjbig0:i386. Preparing to unpack .../39-libjbig0_2.1-3.1+b2_i386.deb ... Unpacking libjbig0:i386 (2.1-3.1+b2) ... Selecting previously unselected package libjpeg62-turbo:i386. Preparing to unpack .../40-libjpeg62-turbo_1%3a2.0.6-4_i386.deb ... Unpacking libjpeg62-turbo:i386 (1:2.0.6-4) ... Selecting previously unselected package liblapack3:i386. Preparing to unpack .../41-liblapack3_3.9.0-3_i386.deb ... Unpacking liblapack3:i386 (3.9.0-3) ... Selecting previously unselected package liblbfgsb0:i386. Preparing to unpack .../42-liblbfgsb0_3.0+dfsg.3-9_i386.deb ... Unpacking liblbfgsb0:i386 (3.0+dfsg.3-9) ... Selecting previously unselected package liblcms2-2:i386. Preparing to unpack .../43-liblcms2-2_2.12~rc1-2_i386.deb ... Unpacking liblcms2-2:i386 (2.12~rc1-2) ... Selecting previously unselected package libwebp6:i386. Preparing to unpack .../44-libwebp6_0.6.1-2.1_i386.deb ... Unpacking libwebp6:i386 (0.6.1-2.1) ... Selecting previously unselected package libtiff5:i386. Preparing to unpack .../45-libtiff5_4.2.0-1_i386.deb ... Unpacking libtiff5:i386 (4.2.0-1) ... Selecting previously unselected package libwebpdemux2:i386. Preparing to unpack .../46-libwebpdemux2_0.6.1-2.1_i386.deb ... Unpacking libwebpdemux2:i386 (0.6.1-2.1) ... Selecting previously unselected package libwebpmux3:i386. Preparing to unpack .../47-libwebpmux3_0.6.1-2.1_i386.deb ... Unpacking libwebpmux3:i386 (0.6.1-2.1) ... Selecting previously unselected package libxau6:i386. Preparing to unpack .../48-libxau6_1%3a1.0.9-1_i386.deb ... Unpacking libxau6:i386 (1:1.0.9-1) ... Selecting previously unselected package libxdmcp6:i386. Preparing to unpack .../49-libxdmcp6_1%3a1.1.2-3_i386.deb ... Unpacking libxdmcp6:i386 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:i386. Preparing to unpack .../50-libxcb1_1.14-3_i386.deb ... Unpacking libxcb1:i386 (1.14-3) ... Selecting previously unselected package mafft. Preparing to unpack .../51-mafft_7.475-1_i386.deb ... Unpacking mafft (7.475-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../52-python3-all_3.9.2-3_i386.deb ... Unpacking python3-all (3.9.2-3) ... Selecting previously unselected package python3-attr. Preparing to unpack .../53-python3-attr_20.3.0-1_all.deb ... Unpacking python3-attr (20.3.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../54-python3-pkg-resources_52.0.0-4_all.deb ... Unpacking python3-pkg-resources (52.0.0-4) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../55-python3-numpy_1%3a1.19.5-1_i386.deb ... Unpacking python3-numpy (1:1.19.5-1) ... Selecting previously unselected package python3-reportlab-accel:i386. 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Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:i386 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up mafft (7.475-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:i386 (1.0.9-2+b2) ... Setting up libmagic1:i386 (1:5.39-3) ... Setting up libdeflate0:i386 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libjbig0:i386 (2.1-3.1+b2) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:i386 (3.9.0-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/blas/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode Setting up libjpeg62-turbo:i386 (1:2.0.6-4) ... Setting up libsigsegv2:i386 (2.13-1) ... Setting up libimagequant0:i386 (2.12.2-1.1) ... Setting up libpng16-16:i386 (1.6.37-3) ... 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Setting up mime-support (3.66) ... Setting up libtool (2.4.6-15) ... Setting up libwebpdemux2:i386 (0.6.1-2.1) ... Setting up libreadline8:i386 (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libfreetype6:i386 (2.10.4+dfsg-1) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libpython3.9-stdlib:i386 (3.9.2-1) ... Setting up libpython3-stdlib:i386 (3.9.2-3) ... Setting up liblbfgsb0:i386 (3.0+dfsg.3-9) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up python3.9 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-tz (2021.1-1) ... Setting up python3-six (1.16.0-2) ... Setting up python3-pil:i386 (8.1.2+dfsg-0.3) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-reportlab-accel:i386 (3.5.59-2) ... Setting up python3-toml (0.10.1-1) ... Setting up python3-reportlab (3.5.59-2) ... Setting up python3-pyrsistent:i386 (0.15.5-1+b3) ... Setting up python3-dateutil (2.8.1-6) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-freezegun (0.3.15-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-more-itertools (4.2.0-3) ... Setting up python3-iniconfig (1.1.1-1) ... Setting up python3-attr (20.3.0-1) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-py (1.10.0-1) ... Setting up python3-all (3.9.2-3) ... Setting up python3-zipp (1.0.0-3) ... Setting up python3-packaging (20.9-2) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-biopython (1.78+dfsg-4) ... Setting up python3-scipy (1.6.0-2) ... Setting up python3-importlib-metadata (1.6.0-2) ... Setting up python3-pandas-lib:i386 (1.1.5+dfsg-2) ... Setting up python3-pandas (1.1.5+dfsg-2) ... Setting up python3-jsonschema (3.2.0-3) ... Setting up python3-pluggy (0.13.0-6) ... Setting up python3-pytest (6.0.2-2) ... Setting up python3-treetime (0.8.1-1) ... Setting up python3-pytest-mock (1.10.4-4) ... Processing triggers for libc-bin (2.31-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/augur-11.0.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b dpkg-buildpackage: info: source package augur dpkg-buildpackage: info: source version 11.0.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/augur-11.0.0' dh_auto_clean I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/augur-11.0.0/.pybuild/cpython3_3.9/build' (and everything under it) 'build/bdist.linux-i386' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it rm -rf .pytest_cache nextstrain_augur.egg-info make[1]: Leaving directory '/build/augur-11.0.0' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/import.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/traits.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/frequency_estimators.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/translate.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/align.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/filenames.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/refine.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/sequence_traits.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/__version__.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/clades.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/titer_model.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/ancestral.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/validate.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/validate_export.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/lbi.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/export.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/version.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/distance.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/__init__.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/__main__.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/tree.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/mask.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/filter.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/frequencies.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/import_beast.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/parse.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/utils.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/titers.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/export_v2.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/reconstruct_sequences.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur copying augur/export_v1.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur creating /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support copying augur/util_support/metadata_file.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support copying augur/util_support/color_parser_line.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support copying augur/util_support/node_data_reader.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support copying augur/util_support/shell_command_runner.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support copying augur/util_support/color_parser.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support copying augur/util_support/date_disambiguator.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support copying augur/util_support/__init__.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support copying augur/util_support/node_data.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support copying augur/util_support/node_data_file.py -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support creating /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data copying augur/data/schema-export-v1-meta.json -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data copying augur/data/lat_longs.tsv -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data copying augur/data/schema-export-v2.json -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data copying augur/data/schema-auspice-config-v2.json -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data copying augur/data/colors.tsv -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data copying augur/data/schema-export-v1-tree.json -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data copying augur/data/schema-annotations.json -> /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data dh_auto_test -O--buildsystem=pybuild I: pybuild base:232: cd /build/augur-11.0.0/.pybuild/cpython3_3.9/build; python3.9 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.9.2, pytest-6.0.2, py-1.10.0, pluggy-0.13.0 rootdir: /build/augur-11.0.0 plugins: mock-1.10.4 collected 197 items tests/test_align.py ............................................... [ 23%] tests/test_filter.py ............... [ 31%] tests/test_frequencies.py ................... [ 41%] tests/test_mask.py ....................................... [ 60%] tests/test_parse.py .. [ 61%] tests/test_translate.py .. [ 62%] tests/test_utils.py .............. [ 70%] tests/test_validate_export.py .. [ 71%] tests/util_support/test_color_parser.py .... [ 73%] tests/util_support/test_date_disambiguator.py ..................... [ 83%] tests/util_support/test_metadata_file.py ........... [ 89%] tests/util_support/test_node_data.py ... [ 90%] tests/util_support/test_node_data_file.py ...... [ 93%] tests/util_support/test_node_data_reader.py ...... [ 96%] tests/util_support/test_shell_command_runner.py ...... [100%] ============================= 197 passed in 19.79s ============================= create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/augur-11.0.0/debian/augur running install running build running build_py running install_lib creating /build/augur-11.0.0/debian/augur/usr creating /build/augur-11.0.0/debian/augur/usr/lib creating /build/augur-11.0.0/debian/augur/usr/lib/python3.9 creating /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages creating /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/import.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/traits.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/frequency_estimators.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/translate.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/align.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/filenames.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/refine.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/sequence_traits.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__version__.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/clades.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/titer_model.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur creating /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/data copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data/schema-export-v1-meta.json -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/data copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data/lat_longs.tsv -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/data copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data/schema-export-v2.json -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/data copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data/schema-auspice-config-v2.json -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/data copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data/colors.tsv -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/data copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data/schema-export-v1-tree.json -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/data copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/data/schema-annotations.json -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/data copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/ancestral.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/validate.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/validate_export.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/lbi.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/export.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/version.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/distance.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__init__.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__main__.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/tree.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/mask.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/filter.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/frequencies.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/import_beast.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/parse.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/utils.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/titers.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur creating /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/export_v1.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/lbi.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/translate.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/export.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/ancestral.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/refine.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/frequency_estimators.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/validate_export.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/validate.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/mask.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/parse.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/version.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/export_v2.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/align.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/__version__.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/tree.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/import.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/traits.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/sequence_traits.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/__init__.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/import_beast.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/filter.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/reconstruct_sequences.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/titers.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/titer_model.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/frequencies.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/clades.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/utils.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/__pycache__/distance.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/export_v2.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/reconstruct_sequences.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/export_v1.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur creating /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/metadata_file.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/color_parser_line.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/node_data_reader.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/shell_command_runner.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/color_parser.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/date_disambiguator.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/__init__.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/node_data.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support creating /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/__pycache__/node_data_file.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/__pycache__/node_data.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/__pycache__/date_disambiguator.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/__pycache__/node_data_reader.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/__pycache__/color_parser.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/__pycache__/__init__.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/__pycache__/shell_command_runner.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/__pycache__/color_parser_line.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/__pycache__/metadata_file.cpython-39.pyc -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/__pycache__ copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/augur/util_support/node_data_file.py -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support copying /build/augur-11.0.0/.pybuild/cpython3_3.9/build/alignment.fasta.to_align.fasta -> /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/import.py to import.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/traits.py to traits.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/frequency_estimators.py to frequency_estimators.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/translate.py to translate.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/align.py to align.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/filenames.py to filenames.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/refine.py to refine.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/sequence_traits.py to sequence_traits.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__version__.py to __version__.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/clades.py to clades.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/titer_model.py to titer_model.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/ancestral.py to ancestral.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/validate.py to validate.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/validate_export.py to validate_export.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/lbi.py to lbi.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/export.py to export.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/version.py to version.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/distance.py to distance.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__init__.py to __init__.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/__main__.py to __main__.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/tree.py to tree.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/mask.py to mask.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/filter.py to filter.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/frequencies.py to frequencies.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/import_beast.py to import_beast.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/parse.py to parse.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/utils.py to utils.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/titers.py to titers.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/export_v2.py to export_v2.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/reconstruct_sequences.py to reconstruct_sequences.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/export_v1.py to export_v1.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/metadata_file.py to metadata_file.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/color_parser_line.py to color_parser_line.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/node_data_reader.py to node_data_reader.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/shell_command_runner.py to shell_command_runner.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/color_parser.py to color_parser.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/date_disambiguator.py to date_disambiguator.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/__init__.py to __init__.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/node_data.py to node_data.cpython-39.pyc byte-compiling /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/augur/util_support/node_data_file.py to node_data_file.cpython-39.pyc running install_data copying LICENSE.txt -> /build/augur-11.0.0/debian/augur/usr/ running install_egg_info running egg_info creating nextstrain_augur.egg-info writing nextstrain_augur.egg-info/PKG-INFO writing dependency_links to nextstrain_augur.egg-info/dependency_links.txt writing entry points to nextstrain_augur.egg-info/entry_points.txt writing requirements to nextstrain_augur.egg-info/requires.txt writing top-level names to nextstrain_augur.egg-info/top_level.txt writing manifest file 'nextstrain_augur.egg-info/SOURCES.txt' reading manifest file 'nextstrain_augur.egg-info/SOURCES.txt' writing manifest file 'nextstrain_augur.egg-info/SOURCES.txt' Copying nextstrain_augur.egg-info to /build/augur-11.0.0/debian/augur/usr/lib/python3.9/dist-packages/nextstrain_augur-11.0.0.egg-info Skipping SOURCES.txt running install_scripts Installing augur script to /build/augur-11.0.0/debian/augur/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/augur-11.0.0' dh_install find debian -name LICENSE.txt -delete find debian -name '*.fasta' -delete make[1]: Leaving directory '/build/augur-11.0.0' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'augur' in '../augur_11.0.0-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../augur_11.0.0-1_i386.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/31652 and its subdirectories I: Current time: Thu Aug 12 13:16:53 -12 2021 I: pbuilder-time-stamp: 1628817413 Fri Aug 13 01:16:54 UTC 2021 I: 1st build successful. Starting 2nd build on remote node ionos16-i386.debian.net. Fri Aug 13 01:16:54 UTC 2021 I: Preparing to do remote build '2' on ionos16-i386.debian.net. Fri Aug 13 01:17:42 UTC 2021 I: Deleting $TMPDIR on ionos16-i386.debian.net. Fri Aug 13 01:17:42 UTC 2021 I: augur_11.0.0-1_i386.changes: Format: 1.8 Date: Tue, 26 Jan 2021 11:14:44 +0530 Source: augur Binary: augur Architecture: all Version: 11.0.0-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: augur - pipeline components for real-time virus analysis Changes: augur (11.0.0-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: 4f55be77a772a4604a3d9706ed3926d2aeb30dac 141520 augur_11.0.0-1_all.deb cba0c105f236ce023196fa951819eb0942753e34 6712 augur_11.0.0-1_i386.buildinfo Checksums-Sha256: 5eea8dac9e9f79cfec53edd22d542edef7f88f657c6a6d853ebb09c4216db7a2 141520 augur_11.0.0-1_all.deb 0a2cf83f9e4cf527f32529a2c1e64f8e60cb74bcc24fe987ead40604110e0390 6712 augur_11.0.0-1_i386.buildinfo Files: 8fede713415e032ce6fffd2be55cb14f 141520 science optional augur_11.0.0-1_all.deb 046d8cf8abf22d60a4bcd9cfab563a82 6712 science optional augur_11.0.0-1_i386.buildinfo Fri Aug 13 01:17:44 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.ksFsTuWg1d/augur_11.0.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.ksFsTuWg1d/augur_11.0.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.ksFsTuWg1d/augur_11.0.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.ksFsTuWg1d/b1/augur_11.0.0-1_i386.changes /srv/reproducible-results/rbuild-debian/tmp.ksFsTuWg1d/b2/augur_11.0.0-1_i386.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.339s) 0.339s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.024s) 0.024s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Fri Aug 13 01:17:46 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Fri Aug 13 01:17:46 UTC 2021 I: augur from bullseye built successfully and reproducibly on i386. Fri Aug 13 01:17:47 UTC 2021 I: Submitting .buildinfo files to external archives: Fri Aug 13 01:17:47 UTC 2021 I: Submitting 8.0K b1/augur_11.0.0-1_i386.buildinfo.asc Fri Aug 13 01:17:49 UTC 2021 I: Submitting 8.0K b2/augur_11.0.0-1_i386.buildinfo.asc Fri Aug 13 01:17:50 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Aug 13 01:17:50 UTC 2021 I: Done submitting .buildinfo files. Fri Aug 13 01:17:50 UTC 2021 I: Removing signed augur_11.0.0-1_i386.buildinfo.asc files: removed './b1/augur_11.0.0-1_i386.buildinfo.asc' removed './b2/augur_11.0.0-1_i386.buildinfo.asc'