Sat Jul 24 14:32:08 UTC 2021 I: starting to build uncalled/bullseye/armhf on jenkins on '2021-07-24 14:31' Sat Jul 24 14:32:08 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_26/6557/console.log Sat Jul 24 14:32:08 UTC 2021 I: Downloading source for bullseye/uncalled=2.2+ds-1 --2021-07-24 14:32:08-- http://cdn-fastly.deb.debian.org/debian/pool/main/u/uncalled/uncalled_2.2+ds-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2105 (2.1K) Saving to: ‘uncalled_2.2+ds-1.dsc’ 0K .. 100% 12.6M=0s 2021-07-24 14:32:08 (12.6 MB/s) - ‘uncalled_2.2+ds-1.dsc’ saved [2105/2105] Sat Jul 24 14:32:08 UTC 2021 I: uncalled_2.2+ds-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: uncalled Binary: uncalled Architecture: any Version: 2.2+ds-1 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://github.com/skovaka/UNCALLED Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/uncalled Vcs-Git: https://salsa.debian.org/med-team/uncalled.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), python3-all, python3-all-dev, python3-setuptools, python3-pybind11, python3-numpy, pdqsort-dev, dh-python, libbwa-dev, libhdf5-dev, pkg-config, libfast5-dev Package-List: uncalled deb science optional arch=any Checksums-Sha1: 8b766015973900b22505add38f5f734d2e1cc9d5 242616 uncalled_2.2+ds.orig.tar.xz 375e3f5cdb165c5eea8f30d75a7a813c893638d0 5132 uncalled_2.2+ds-1.debian.tar.xz Checksums-Sha256: 9db3bd411d255bcc06e4abb045fbe5b4ce178e2d7701ffb2ddfe6009cf8f8d17 242616 uncalled_2.2+ds.orig.tar.xz a83ef5f092f6ed1e028810b8248d41022b30cd44e842da10208e4094a8dd198e 5132 uncalled_2.2+ds-1.debian.tar.xz Files: 17fcdd039f4308cdb795fe4db3e3073e 242616 uncalled_2.2+ds.orig.tar.xz 7e104a45aae154e38b1e4a255f80721f 5132 uncalled_2.2+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmAg+5UACgkQPCZ2P2xn 5uJQgg/+OhPtrVPAPdlLnganZXp7HgljYtkYWmHE9A6ZUkHj/ax9HCceNps1NAVV idilyJVXs/gptKv4Pct6Qgw0RPwzLa7q4gnwkt5IyxfyPMKUoNti1U9ORqZD8qGC PL+YRNilIxQ/Wm3Kenw7E1GuW51bAXUWAgl7Z0gvM4UoCA0ap/Ll7mA/5K9dsj0I 4OnMCw7xl+TmRqHrCbKCJk3IgPeHT0BhS12gRQuQrHbcHcCqK41SbSHDzI8TYJ6R LyYFAxS7TY9cfMd+pSRwy36kDbd0MNdngSo74FLNkE1k6sYSIGJ3QEEUJuuBazyz CqxYN5J93E4cxJQHBfmpmE3gpNjWC2foaxMwQPsVFMfU14I/EetcE5HRhyVO4eZk KISM2Gt4OncAny0fyo2yGPrPRblgeu1ta89Tjk/GXHN1Ga7vATVwzYCUdtn4J3Hn Q+FutS1XYfY+jXGLdTKJIyFmfTweExuzilMo70jT1aK4xm2zbVhALhnCbjZOMVr5 J01Pna1lgxe17oDgTej4/8jqP+4WF9VLEl3/NDmajOKdJO6U9Ge11awFyESBYrln EGQR+CiQer8g508MQ7lyyiZQ+zgoL8Gjt/tTQrnR1ehmv7zVHepj/fonX04Mv2c1 xwO+kUsqdPoCAK0AqANRk8tg+9ghtWM6E5JQJAXWF5Uyvgqih1k= =3Mr+ -----END PGP SIGNATURE----- Sat Jul 24 14:32:08 UTC 2021 I: Checking whether the package is not for us Sat Jul 24 14:32:08 UTC 2021 I: Starting 1st build on remote node jtx1a-armhf-rb.debian.net. Sat Jul 24 14:32:08 UTC 2021 I: Preparing to do remote build '1' on jtx1a-armhf-rb.debian.net. Sat Jul 24 14:41:18 UTC 2021 I: Deleting $TMPDIR on jtx1a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Jul 24 02:32:14 -12 2021 I: pbuilder-time-stamp: 1627137134 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [uncalled_2.2+ds-1.dsc] I: copying [./uncalled_2.2+ds.orig.tar.xz] I: copying [./uncalled_2.2+ds-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.EgkrkuBc/trustedkeys.kbx': General error gpgv: Signature made Sun Feb 7 20:51:33 2021 -12 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./uncalled_2.2+ds-1.dsc dpkg-source: info: extracting uncalled in uncalled-2.2+ds dpkg-source: info: unpacking uncalled_2.2+ds.orig.tar.xz dpkg-source: info: unpacking uncalled_2.2+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying debian_hdf5 dpkg-source: info: applying debian_bwa dpkg-source: info: applying debian_fast5 dpkg-source: info: applying debian_pybind11 dpkg-source: info: applying fix_debug dpkg-source: info: applying skip_read_until dpkg-source: info: applying debian_pdqsort dpkg-source: info: applying 32bit I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/13117/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='fa04fc4ab0604c71b4a5303e355b6e98' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='13117' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.RThNQHptnr/pbuilderrc_8KaK --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.RThNQHptnr/b1 --logfile b1/build.log uncalled_2.2+ds-1.dsc' SUDO_GID='114' SUDO_UID='108' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:8000/' I: uname -a Linux jtx1a 5.10.0-8-arm64 #1 SMP Debian 5.10.46-2 (2021-07-20) aarch64 GNU/Linux I: ls -l /bin total 3580 -rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash -rwxr-xr-x 1 root root 75880 Sep 22 2020 date -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd -rwxr-xr-x 1 root root 59912 Sep 22 2020 df -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir -rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 22496 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln -rwxr-xr-x 1 root root 35068 Feb 7 2020 login -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls -rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 34408 Feb 7 02:38 more -rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount -rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 22 21:28 sh -> dash -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty -rwsr-xr-x 1 root root 46704 Feb 7 02:38 su -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch -rwxr-xr-x 1 root root 22496 Sep 22 2020 true -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir -rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/13117/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3-all, python3-all-dev, python3-setuptools, python3-pybind11, python3-numpy, pdqsort-dev, dh-python, libbwa-dev, libhdf5-dev, pkg-config, libfast5-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-pybind11; however: Package python3-pybind11 is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on pdqsort-dev; however: Package pdqsort-dev is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libbwa-dev; however: Package libbwa-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on libfast5-dev; however: Package libfast5-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libblas3{a} libbwa-dev{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libexpat1-dev{a} libfast5-dev{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libglib2.0-0{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libicu67{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} liblapack3{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libsz2{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} pdqsort-dev{a} pkg-config{a} po-debconf{a} pybind11-dev{a} python3{a} python3-all{a} python3-all-dev{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pkg-resources{a} python3-pybind11{a} python3-setuptools{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libeigen3-dev libglib2.0-data libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 86 newly installed, 0 to remove and 0 not upgraded. Need to get 40.9 MB of archives. After unpacking 143 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-7 [138 kB] Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB] Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB] Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB] Get: 6 http://deb.debian.org/debian bullseye/main armhf libpython3.9-minimal armhf 3.9.2-1 [790 kB] Get: 7 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2 [76.3 kB] Get: 8 http://deb.debian.org/debian bullseye/main armhf python3.9-minimal armhf 3.9.2-1 [1630 kB] Get: 9 http://deb.debian.org/debian bullseye/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main armhf media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main armhf libmpdec3 armhf 2.5.1-1 [74.9 kB] Get: 12 http://deb.debian.org/debian bullseye/main armhf readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main armhf libreadline8 armhf 8.1-1 [147 kB] Get: 14 http://deb.debian.org/debian bullseye/main armhf libpython3.9-stdlib armhf 3.9.2-1 [1608 kB] Get: 15 http://deb.debian.org/debian bullseye/main armhf python3.9 armhf 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main armhf python3 armhf 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB] Get: 20 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3 [117 kB] Get: 21 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3 [68.1 kB] Get: 22 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB] Get: 23 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB] Get: 24 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB] Get: 25 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB] Get: 26 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB] Get: 28 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB] Get: 29 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB] Get: 30 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB] Get: 31 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB] Get: 34 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 35 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 36 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB] Get: 37 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB] Get: 38 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB] Get: 39 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [602 kB] Get: 40 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB] Get: 41 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 42 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB] Get: 44 http://deb.debian.org/debian bullseye/main armhf python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 45 http://deb.debian.org/debian bullseye/main armhf python3-distutils all 3.9.2-1 [143 kB] Get: 46 http://deb.debian.org/debian bullseye/main armhf dh-python all 4.20201102+nmu1 [99.4 kB] Get: 47 http://deb.debian.org/debian bullseye/main armhf hdf5-helpers armhf 1.10.6+repack-4 [40.4 kB] Get: 48 http://deb.debian.org/debian bullseye/main armhf libaec0 armhf 1.0.4-1 [20.4 kB] Get: 49 http://deb.debian.org/debian bullseye/main armhf libsz2 armhf 1.0.4-1 [6616 B] Get: 50 http://deb.debian.org/debian bullseye/main armhf libaec-dev armhf 1.0.4-1 [18.3 kB] Get: 51 http://deb.debian.org/debian bullseye/main armhf libblas3 armhf 3.9.0-3 [109 kB] Get: 52 http://deb.debian.org/debian bullseye/main armhf libbwa-dev armhf 0.7.17-6+b1 [138 kB] Get: 53 http://deb.debian.org/debian bullseye/main armhf libexpat1-dev armhf 2.2.10-2 [123 kB] Get: 54 http://deb.debian.org/debian bullseye/main armhf libhdf5-103-1 armhf 1.10.6+repack-4 [1178 kB] Get: 55 http://deb.debian.org/debian bullseye/main armhf libgfortran5 armhf 10.2.1-6 [237 kB] Get: 56 http://deb.debian.org/debian bullseye/main armhf libhdf5-fortran-102 armhf 1.10.6+repack-4 [94.0 kB] Get: 57 http://deb.debian.org/debian bullseye/main armhf libhdf5-hl-100 armhf 1.10.6+repack-4 [80.5 kB] Get: 58 http://deb.debian.org/debian bullseye/main armhf libhdf5-hl-fortran-100 armhf 1.10.6+repack-4 [51.2 kB] Get: 59 http://deb.debian.org/debian bullseye/main armhf libhdf5-cpp-103-1 armhf 1.10.6+repack-4 [133 kB] Get: 60 http://deb.debian.org/debian bullseye/main armhf libhdf5-hl-cpp-100 armhf 1.10.6+repack-4 [37.4 kB] Get: 61 http://deb.debian.org/debian bullseye/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [185 kB] Get: 62 http://deb.debian.org/debian bullseye/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [123 kB] Get: 63 http://deb.debian.org/debian bullseye/main armhf libjpeg62-turbo-dev armhf 1:2.0.6-4 [242 kB] Get: 64 http://deb.debian.org/debian bullseye/main armhf libjpeg-dev armhf 1:2.0.6-4 [67.8 kB] Get: 65 http://deb.debian.org/debian bullseye/main armhf libhdf5-dev armhf 1.10.6+repack-4 [2444 kB] Get: 66 http://deb.debian.org/debian bullseye/main armhf libfast5-dev all 0.6.5-4 [49.8 kB] Get: 67 http://deb.debian.org/debian bullseye/main armhf libglib2.0-0 armhf 2.66.8-1 [1206 kB] Get: 68 http://deb.debian.org/debian bullseye/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 69 http://deb.debian.org/debian bullseye/main armhf libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 70 http://deb.debian.org/debian bullseye/main armhf libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 71 http://deb.debian.org/debian bullseye/main armhf liblapack3 armhf 3.9.0-3 [1651 kB] Get: 72 http://deb.debian.org/debian bullseye/main armhf libpython3.9 armhf 3.9.2-1 [1447 kB] Get: 73 http://deb.debian.org/debian bullseye/main armhf libpython3.9-dev armhf 3.9.2-1 [3160 kB] Get: 74 http://deb.debian.org/debian bullseye/main armhf libpython3-dev armhf 3.9.2-3 [21.7 kB] Get: 75 http://deb.debian.org/debian bullseye/main armhf libpython3-all-dev armhf 3.9.2-3 [1068 B] Get: 76 http://deb.debian.org/debian bullseye/main armhf pdqsort-dev all 0.0.0+git20180419-2.1 [9988 B] Get: 77 http://deb.debian.org/debian bullseye/main armhf pkg-config armhf 0.29.2-1 [62.4 kB] Get: 78 http://deb.debian.org/debian bullseye/main armhf pybind11-dev all 2.6.2-1 [156 kB] Get: 79 http://deb.debian.org/debian bullseye/main armhf python3-all armhf 3.9.2-3 [1056 B] Get: 80 http://deb.debian.org/debian bullseye/main armhf python3.9-dev armhf 3.9.2-1 [515 kB] Get: 81 http://deb.debian.org/debian bullseye/main armhf python3-dev armhf 3.9.2-3 [24.8 kB] Get: 82 http://deb.debian.org/debian bullseye/main armhf python3-all-dev armhf 3.9.2-3 [1064 B] Get: 83 http://deb.debian.org/debian bullseye/main armhf python3-pkg-resources all 52.0.0-4 [190 kB] Get: 84 http://deb.debian.org/debian bullseye/main armhf python3-numpy armhf 1:1.19.5-1 [2981 kB] Get: 85 http://deb.debian.org/debian bullseye/main armhf python3-pybind11 all 2.6.2-1 [166 kB] Get: 86 http://deb.debian.org/debian bullseye/main armhf python3-setuptools all 52.0.0-4 [366 kB] Fetched 40.9 MB in 11s (3765 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-7_armhf.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../1-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_armhf.deb ... 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Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20265 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_armhf.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:armhf. 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Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20686 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_armhf.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. 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Selecting previously unselected package libicu67:armhf. Preparing to unpack .../21-libicu67_67.1-7_armhf.deb ... Unpacking libicu67:armhf (67.1-7) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../22-libxml2_2.9.10+dfsg-6.7_armhf.deb ... Unpacking libxml2:armhf (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../23-gettext_0.21-4_armhf.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../24-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../25-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../26-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../27-python3-lib2to3_3.9.2-1_all.deb ... Unpacking python3-lib2to3 (3.9.2-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../28-python3-distutils_3.9.2-1_all.deb ... Unpacking python3-distutils (3.9.2-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../29-dh-python_4.20201102+nmu1_all.deb ... Unpacking dh-python (4.20201102+nmu1) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../30-hdf5-helpers_1.10.6+repack-4_armhf.deb ... Unpacking hdf5-helpers (1.10.6+repack-4) ... Selecting previously unselected package libaec0:armhf. Preparing to unpack .../31-libaec0_1.0.4-1_armhf.deb ... Unpacking libaec0:armhf (1.0.4-1) ... Selecting previously unselected package libsz2:armhf. Preparing to unpack .../32-libsz2_1.0.4-1_armhf.deb ... Unpacking libsz2:armhf (1.0.4-1) ... Selecting previously unselected package libaec-dev:armhf. Preparing to unpack .../33-libaec-dev_1.0.4-1_armhf.deb ... Unpacking libaec-dev:armhf (1.0.4-1) ... Selecting previously unselected package libblas3:armhf. Preparing to unpack .../34-libblas3_3.9.0-3_armhf.deb ... Unpacking libblas3:armhf (3.9.0-3) ... Selecting previously unselected package libbwa-dev. Preparing to unpack .../35-libbwa-dev_0.7.17-6+b1_armhf.deb ... Unpacking libbwa-dev (0.7.17-6+b1) ... Selecting previously unselected package libexpat1-dev:armhf. Preparing to unpack .../36-libexpat1-dev_2.2.10-2_armhf.deb ... Unpacking libexpat1-dev:armhf (2.2.10-2) ... Selecting previously unselected package libhdf5-103-1:armhf. Preparing to unpack .../37-libhdf5-103-1_1.10.6+repack-4_armhf.deb ... Unpacking libhdf5-103-1:armhf (1.10.6+repack-4) ... Selecting previously unselected package libgfortran5:armhf. Preparing to unpack .../38-libgfortran5_10.2.1-6_armhf.deb ... Unpacking libgfortran5:armhf (10.2.1-6) ... Selecting previously unselected package libhdf5-fortran-102:armhf. Preparing to unpack .../39-libhdf5-fortran-102_1.10.6+repack-4_armhf.deb ... Unpacking libhdf5-fortran-102:armhf (1.10.6+repack-4) ... Selecting previously unselected package libhdf5-hl-100:armhf. Preparing to unpack .../40-libhdf5-hl-100_1.10.6+repack-4_armhf.deb ... Unpacking libhdf5-hl-100:armhf (1.10.6+repack-4) ... Selecting previously unselected package libhdf5-hl-fortran-100:armhf. Preparing to unpack .../41-libhdf5-hl-fortran-100_1.10.6+repack-4_armhf.deb ... Unpacking libhdf5-hl-fortran-100:armhf (1.10.6+repack-4) ... Selecting previously unselected package libhdf5-cpp-103-1:armhf. Preparing to unpack .../42-libhdf5-cpp-103-1_1.10.6+repack-4_armhf.deb ... Unpacking libhdf5-cpp-103-1:armhf (1.10.6+repack-4) ... Selecting previously unselected package libhdf5-hl-cpp-100:armhf. Preparing to unpack .../43-libhdf5-hl-cpp-100_1.10.6+repack-4_armhf.deb ... Unpacking libhdf5-hl-cpp-100:armhf (1.10.6+repack-4) ... Selecting previously unselected package zlib1g-dev:armhf. Preparing to unpack .../44-zlib1g-dev_1%3a1.2.11.dfsg-2_armhf.deb ... Unpacking zlib1g-dev:armhf (1:1.2.11.dfsg-2) ... Selecting previously unselected package libjpeg62-turbo:armhf. Preparing to unpack .../45-libjpeg62-turbo_1%3a2.0.6-4_armhf.deb ... Unpacking libjpeg62-turbo:armhf (1:2.0.6-4) ... Selecting previously unselected package libjpeg62-turbo-dev:armhf. Preparing to unpack .../46-libjpeg62-turbo-dev_1%3a2.0.6-4_armhf.deb ... Unpacking libjpeg62-turbo-dev:armhf (1:2.0.6-4) ... Selecting previously unselected package libjpeg-dev:armhf. Preparing to unpack .../47-libjpeg-dev_1%3a2.0.6-4_armhf.deb ... Unpacking libjpeg-dev:armhf (1:2.0.6-4) ... Selecting previously unselected package libhdf5-dev. Preparing to unpack .../48-libhdf5-dev_1.10.6+repack-4_armhf.deb ... Unpacking libhdf5-dev (1.10.6+repack-4) ... Selecting previously unselected package libfast5-dev. Preparing to unpack .../49-libfast5-dev_0.6.5-4_all.deb ... Unpacking libfast5-dev (0.6.5-4) ... Selecting previously unselected package libglib2.0-0:armhf. Preparing to unpack .../50-libglib2.0-0_2.66.8-1_armhf.deb ... Unpacking libglib2.0-0:armhf (2.66.8-1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../51-libjs-jquery_3.5.1+dfsg+~3.5.5-7_all.deb ... Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../52-libjs-underscore_1.9.1~dfsg-3_all.deb ... Unpacking libjs-underscore (1.9.1~dfsg-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../53-libjs-sphinxdoc_3.4.3-2_all.deb ... Unpacking libjs-sphinxdoc (3.4.3-2) ... Selecting previously unselected package liblapack3:armhf. Preparing to unpack .../54-liblapack3_3.9.0-3_armhf.deb ... Unpacking liblapack3:armhf (3.9.0-3) ... Selecting previously unselected package libpython3.9:armhf. Preparing to unpack .../55-libpython3.9_3.9.2-1_armhf.deb ... Unpacking libpython3.9:armhf (3.9.2-1) ... Selecting previously unselected package libpython3.9-dev:armhf. Preparing to unpack .../56-libpython3.9-dev_3.9.2-1_armhf.deb ... Unpacking libpython3.9-dev:armhf (3.9.2-1) ... Selecting previously unselected package libpython3-dev:armhf. Preparing to unpack .../57-libpython3-dev_3.9.2-3_armhf.deb ... Unpacking libpython3-dev:armhf (3.9.2-3) ... Selecting previously unselected package libpython3-all-dev:armhf. Preparing to unpack .../58-libpython3-all-dev_3.9.2-3_armhf.deb ... Unpacking libpython3-all-dev:armhf (3.9.2-3) ... Selecting previously unselected package pdqsort-dev. Preparing to unpack .../59-pdqsort-dev_0.0.0+git20180419-2.1_all.deb ... Unpacking pdqsort-dev (0.0.0+git20180419-2.1) ... Selecting previously unselected package pkg-config. Preparing to unpack .../60-pkg-config_0.29.2-1_armhf.deb ... Unpacking pkg-config (0.29.2-1) ... Selecting previously unselected package pybind11-dev. Preparing to unpack .../61-pybind11-dev_2.6.2-1_all.deb ... Unpacking pybind11-dev (2.6.2-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../62-python3-all_3.9.2-3_armhf.deb ... Unpacking python3-all (3.9.2-3) ... Selecting previously unselected package python3.9-dev. Preparing to unpack .../63-python3.9-dev_3.9.2-1_armhf.deb ... Unpacking python3.9-dev (3.9.2-1) ... Selecting previously unselected package python3-dev. Preparing to unpack .../64-python3-dev_3.9.2-3_armhf.deb ... Unpacking python3-dev (3.9.2-3) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../65-python3-all-dev_3.9.2-3_armhf.deb ... Unpacking python3-all-dev (3.9.2-3) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../66-python3-pkg-resources_52.0.0-4_all.deb ... Unpacking python3-pkg-resources (52.0.0-4) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../67-python3-numpy_1%3a1.19.5-1_armhf.deb ... Unpacking python3-numpy (1:1.19.5-1) ... Selecting previously unselected package python3-pybind11. Preparing to unpack .../68-python3-pybind11_2.6.2-1_all.deb ... Unpacking python3-pybind11 (2.6.2-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../69-python3-setuptools_52.0.0-4_all.deb ... Unpacking python3-setuptools (52.0.0-4) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:armhf (1.5.3-1) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up hdf5-helpers (1.10.6+repack-4) ... Setting up libicu67:armhf (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:armhf (2.66.8-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:armhf (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up pybind11-dev (2.6.2-1) ... Setting up libaec0:armhf (1.0.4-1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:armhf (3.9.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libexpat1-dev:armhf (2.2.10-2) ... Setting up libjpeg62-turbo:armhf (1:2.0.6-4) ... Setting up libjpeg62-turbo-dev:armhf (1:2.0.6-4) ... Setting up pdqsort-dev (0.0.0+git20180419-2.1) ... Setting up libsigsegv2:armhf (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up pkg-config (0.29.2-1) ... Setting up libgfortran5:armhf (10.2.1-6) ... Setting up libbwa-dev (0.7.17-6+b1) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libmpdec3:armhf (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up libelf1:armhf (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:armhf (2.9.10+dfsg-6.7) ... Setting up libsz2:armhf (1.0.4-1) ... Setting up libjs-underscore (1.9.1~dfsg-3) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up liblapack3:armhf (3.9.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libreadline8:armhf (8.1-1) ... Setting up libaec-dev:armhf (1.0.4-1) ... Setting up libjpeg-dev:armhf (1:2.0.6-4) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libjs-sphinxdoc (3.4.3-2) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up libhdf5-103-1:armhf (1.10.6+repack-4) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libhdf5-cpp-103-1:armhf (1.10.6+repack-4) ... Setting up libpython3.9-stdlib:armhf (3.9.2-1) ... Setting up libpython3-stdlib:armhf (3.9.2-3) ... Setting up libhdf5-hl-100:armhf (1.10.6+repack-4) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up libhdf5-hl-cpp-100:armhf (1.10.6+repack-4) ... Setting up libpython3.9:armhf (3.9.2-1) ... Setting up libhdf5-fortran-102:armhf (1.10.6+repack-4) ... Setting up libhdf5-hl-fortran-100:armhf (1.10.6+repack-4) ... Setting up python3.9 (3.9.2-1) ... Setting up libpython3.9-dev:armhf (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up libhdf5-dev (1.10.6+repack-4) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5-serial.pc to provide /usr/lib/arm-linux-gnueabihf/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up python3.9-dev (3.9.2-1) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pybind11 (2.6.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up libpython3-dev:armhf (3.9.2-3) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-all (3.9.2-3) ... Setting up libfast5-dev (0.6.5-4) ... Setting up libpython3-all-dev:armhf (3.9.2-3) ... Setting up python3-dev (3.9.2-3) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-all-dev (3.9.2-3) ... Processing triggers for libc-bin (2.31-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/uncalled-2.2+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../uncalled_2.2+ds-1_source.changes dpkg-buildpackage: info: source package uncalled dpkg-buildpackage: info: source version 2.2+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build' (and everything under it) 'build/bdist.linux-armhf' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled copying uncalled/minknow_client.py -> /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled copying uncalled/index.py -> /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled copying uncalled/__init__.py -> /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled copying uncalled/args.py -> /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled copying uncalled/debug.py -> /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled copying uncalled/pafstats.py -> /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled copying uncalled/sim_utils.py -> /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled running egg_info creating uncalled.egg-info writing uncalled.egg-info/PKG-INFO writing dependency_links to uncalled.egg-info/dependency_links.txt writing top-level names to uncalled.egg-info/top_level.txt writing manifest file 'uncalled.egg-info/SOURCES.txt' reading manifest file 'uncalled.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'uncalled.egg-info/SOURCES.txt' creating /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled/conf copying uncalled/conf/defaults.toml -> /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled/conf copying uncalled/conf/r94_5mers.txt -> /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled/conf copying uncalled/conf/r94_5mers_threshs.txt -> /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled/conf running build_ext All submodules present Found libbwa.a Found libhdf5.a building '_uncalled' extension creating build creating build/temp.linux-armhf-3.9 creating build/temp.linux-armhf-3.9/src arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/uncalled-2.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I./submods/toml11 -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.9 -c src/chunk.cpp -o build/temp.linux-armhf-3.9/src/chunk.o -std=c++11 -O3 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/uncalled-2.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I./submods/toml11 -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.9 -c src/client_sim.cpp -o build/temp.linux-armhf-3.9/src/client_sim.o -std=c++11 -O3 In file included from /usr/include/c++/10/vector:72, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/detail/common.h:156, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/pytypes.h:12, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/cast.h:13, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/attr.h:13, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/pybind11.h:45, from src/util.hpp:34, from src/client_sim.hpp:29, from src/client_sim.cpp:24: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair}; _Tp = std::pair; _Alloc = std::allocator >]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector > ClientSim::get_read_chunks()’: /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/uncalled-2.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I./submods/toml11 -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.9 -c src/event_detector.cpp -o build/temp.linux-armhf-3.9/src/event_detector.o -std=c++11 -O3 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/uncalled-2.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I./submods/toml11 -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.9 -c src/event_profiler.cpp -o build/temp.linux-armhf-3.9/src/event_profiler.o -std=c++11 -O3 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/uncalled-2.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I./submods/toml11 -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.9 -c src/fast5_reader.cpp -o build/temp.linux-armhf-3.9/src/fast5_reader.o -std=c++11 -O3 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/uncalled-2.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I./submods/toml11 -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.9 -c src/map_pool.cpp -o build/temp.linux-armhf-3.9/src/map_pool.o -std=c++11 -O3 In file included from /usr/include/c++/10/vector:72, from src/map_pool.hpp:28, from src/map_pool.cpp:26: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const Paf&}; _Tp = Paf; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from src/map_pool.hpp:28, from src/map_pool.cpp:26: /usr/include/c++/10/bits/stl_vector.h: In member function ‘std::vector MapPool::update()’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/uncalled-2.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I./submods/toml11 -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.9 -c src/mapper.cpp -o build/temp.linux-armhf-3.9/src/mapper.o -std=c++11 -O3 src/mapper.cpp: In member function ‘void Mapper::update_seeds(Mapper::PathBuffer&, bool)’: src/mapper.cpp:673:13: warning: unused variable ‘sa_start’ [-Wunused-variable] 673 | u64 sa_start = sa_end - ref_len + 1; | ^~~~~~~~ src/mapper.cpp:676:14: warning: variable ‘clust’ set but not used [-Wunused-but-set-variable] 676 | auto clust = seed_tracker_.add_seed( | ^~~~~ src/mapper.cpp: In copy constructor ‘Mapper::PathBuffer::PathBuffer(const Mapper::PathBuffer&)’: src/mapper.cpp:736:45: warning: ‘void* memcpy(void*, const void*, size_t)’ writing to an object of type ‘class Mapper::PathBuffer’ with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 736 | std::memcpy(this, &p, sizeof(PathBuffer)); | ^ In file included from src/mapper.cpp:26: src/mapper.hpp:139:11: note: ‘class Mapper::PathBuffer’ declared here 139 | class PathBuffer { | ^~~~~~~~~~ In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from /usr/include/pdqsort.h:26, from src/mapper.cpp:24: /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = Mapper::PathBuffer; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from src/mapper.cpp:24: /usr/include/pdqsort.h: In function ‘void pdqsort_detail::pdqsort_loop(Iter, Iter, Compare, int, bool) [with Iter = __gnu_cxx::__normal_iterator >; Compare = std::less; bool Branchless = false]’: /usr/include/pdqsort.h:412:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 412 | inline void pdqsort_loop(Iter begin, Iter end, Compare comp, int bad_allowed, bool leftmost = true) { | ^~~~~~~~~~~~ /usr/include/pdqsort.h:412:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/pdqsort.h:412:17: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/pdqsort.h:499:52: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 499 | pdqsort_loop(begin, pivot_pos, comp, bad_allowed, leftmost); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/pdqsort.h: In member function ‘bool Mapper::map_next()’: /usr/include/pdqsort.h:514:84: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 512 | pdqsort_detail::pdqsort_loop::type>::value && | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 514 | std::is_arithmetic::value_type>::value>( | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^ 515 | begin, end, comp, pdqsort_detail::log2(end - begin)); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/uncalled-2.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I./submods/toml11 -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.9 -c src/normalizer.cpp -o build/temp.linux-armhf-3.9/src/normalizer.o -std=c++11 -O3 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/uncalled-2.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I./submods/toml11 -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.9 -c src/pybinder.cpp -o build/temp.linux-armhf-3.9/src/pybinder.o -std=c++11 -O3 In file included from /usr/include/c++/10/vector:72, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/detail/common.h:156, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/pytypes.h:12, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/cast.h:13, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/attr.h:13, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/pybind11.h:45, from src/pybinder.cpp:2: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const long long unsigned int&}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/detail/common.h:156, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/pytypes.h:12, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/cast.h:13, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/attr.h:13, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/pybind11.h:45, from src/pybinder.cpp:2: /usr/include/c++/10/bits/stl_vector.h: In member function ‘BwaIndex::FwdRevCoords BwaIndex::range_to_fms(std::string, u64, u64) [with KmerLen KLEN = k5]’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/detail/common.h:156, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/pytypes.h:12, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/cast.h:13, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/attr.h:13, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/pybind11.h:45, from src/pybinder.cpp:2: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {toml::basic_value}; _Tp = toml::basic_value; _Alloc = std::allocator >]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const toml::basic_value&}; _Tp = toml::basic_value; _Alloc = std::allocator >]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {std::pair, std::allocator >, long long unsigned int>}; _Tp = std::pair, long long unsigned int>; _Alloc = std::allocator, long long unsigned int> >]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector, long long unsigned int> >::iterator’ changed in GCC 7.1 /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector, long long unsigned int> > BwaIndex::get_seqs() const [with KmerLen KLEN = k5]’: /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator, long long unsigned int>*, std::vector, long long unsigned int> > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:67, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/detail/common.h:156, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/pytypes.h:12, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/cast.h:13, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/attr.h:13, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/pybind11.h:45, from src/pybinder.cpp:2: /usr/include/c++/10/bits/stl_vector.h: In function ‘toml::result > toml::detail::insert_nested_key(typename Value::table_type&, const Value&, InputIterator, InputIterator, toml::detail::region, bool) [with Value = toml::basic_value; InputIterator = __gnu_cxx::__normal_iterator*, std::vector > >; Container = std::vector]’: /usr/include/c++/10/bits/stl_vector.h:1198:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 1198 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In file included from /usr/include/c++/10/vector:72, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/detail/common.h:156, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/pytypes.h:12, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/cast.h:13, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/attr.h:13, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/pybind11.h:45, from src/pybinder.cpp:2: /usr/include/c++/10/bits/vector.tcc: In function ‘toml::result >, std::__cxx11::basic_string > toml::detail::parse_array(toml::detail::location&) [with Value = toml::basic_value; Container = std::vector]’: /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/uncalled-2.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I./submods/toml11 -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.9 -c src/range.cpp -o build/temp.linux-armhf-3.9/src/range.o -std=c++11 -O3 arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/uncalled-2.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I./submods/toml11 -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.9 -c src/read_buffer.cpp -o build/temp.linux-armhf-3.9/src/read_buffer.o -std=c++11 -O3 In file included from /usr/include/c++/10/vector:72, from src/read_buffer.hpp:28, from src/read_buffer.cpp:24: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const std::__cxx11::basic_string, std::allocator >&, short unsigned int, const unsigned int&, float, const std::vector >&, unsigned int&, short unsigned int&}; _Tp = Chunk; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function ‘u32 ReadBuffer::get_chunks(std::vector&, bool, u32) const’: /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/uncalled-2.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I./submods/toml11 -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.9 -c src/realtime_pool.cpp -o build/temp.linux-armhf-3.9/src/realtime_pool.o -std=c++11 -O3 In file included from /usr/include/c++/10/vector:72, from src/realtime_pool.hpp:28, from src/realtime_pool.cpp:28: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {short unsigned int, unsigned int&, Paf&}; _Tp = std::tuple; _Alloc = std::allocator >]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In member function ‘std::vector > RealtimePool::update()’: /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator*, std::vector > >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/uncalled-2.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I./submods/toml11 -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.9 -c src/seed_tracker.cpp -o build/temp.linux-armhf-3.9/src/seed_tracker.o -std=c++11 -O3 In file included from /usr/include/c++/10/bits/stl_algo.h:61, from /usr/include/c++/10/algorithm:62, from src/seed_tracker.hpp:30, from src/seed_tracker.cpp:26: /usr/include/c++/10/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = SeedCluster; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/10/bits/stl_heap.h:223:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 223 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/include/c++/10/algorithm:62, from src/seed_tracker.hpp:30, from src/seed_tracker.cpp:26: /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__unguarded_linear_insert(_RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Val_comp_iter >]’: /usr/include/c++/10/bits/stl_algo.h:1819:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1819 | __unguarded_linear_insert(_RandomAccessIterator __last, | ^~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1839 | __insertion_sort(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1839:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h: In function ‘void std::__introsort_loop(_RandomAccessIterator, _RandomAccessIterator, _Size, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Size = int; _Compare = __gnu_cxx::__ops::_Iter_comp_iter >]’: /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1945 | __introsort_loop(_RandomAccessIterator __first, | ^~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1945:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 /usr/include/c++/10/bits/stl_algo.h:1959:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1959 | std::__introsort_loop(__cut, __last, __depth_limit, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h: In member function ‘void SeedTracker::print(std::ostream&, u16)’: /usr/include/c++/10/bits/stl_algo.h:1974:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1974 | std::__introsort_loop(__first, __last, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ 1975 | std::__lg(__last - __first) * 2, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1976 | __comp); | ~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1886:25: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1886 | std::__insertion_sort(__first, __first + int(_S_threshold), __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/stl_algo.h:1891:23: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1891 | std::__insertion_sort(__first, __last, __comp); | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -pthread -Wno-unused-result -Wsign-compare -DNDEBUG -g -fwrapv -O2 -Wall -g -ffile-prefix-map=/build/python3.9-jS0VHk/python3.9-3.9.2=. -fstack-protector-strong -Wformat -Werror=format-security -g -fwrapv -O2 -g -O2 -fdebug-prefix-map=/build/uncalled-2.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -DPYBIND -I./submods -I/usr/include/hdf5/serial -I/usr/include/fast5/ -I/usr/include/ -I./submods/toml11 -I/usr/lib/python3/dist-packages/pybind11/include -I/usr/include/python3.9 -c src/self_align_ref.cpp -o build/temp.linux-armhf-3.9/src/self_align_ref.o -std=c++11 -O3 In file included from /usr/include/c++/10/vector:72, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/detail/common.h:156, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/pytypes.h:12, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/cast.h:13, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/attr.h:13, from /usr/lib/python3/dist-packages/pybind11/include/pybind11/pybind11.h:45, from src/util.hpp:34, from src/range.hpp:28, from src/self_align_ref.cpp:28: /usr/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {long long unsigned int}; _Tp = long long unsigned int; _Alloc = std::allocator]’: /usr/include/c++/10/bits/vector.tcc:426:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc: In function ‘std::vector > self_align(const string&, u32)’: /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/10/bits/vector.tcc:121:21: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 121 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-g++ -pthread -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/build/uncalled-2.2+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-armhf-3.9/src/chunk.o build/temp.linux-armhf-3.9/src/client_sim.o build/temp.linux-armhf-3.9/src/event_detector.o build/temp.linux-armhf-3.9/src/event_profiler.o build/temp.linux-armhf-3.9/src/fast5_reader.o build/temp.linux-armhf-3.9/src/map_pool.o build/temp.linux-armhf-3.9/src/mapper.o build/temp.linux-armhf-3.9/src/normalizer.o build/temp.linux-armhf-3.9/src/pybinder.o build/temp.linux-armhf-3.9/src/range.o build/temp.linux-armhf-3.9/src/read_buffer.o build/temp.linux-armhf-3.9/src/realtime_pool.o build/temp.linux-armhf-3.9/src/seed_tracker.o build/temp.linux-armhf-3.9/src/self_align_ref.o -L./submods/bwa -L/usr/lib/arm-linux-gnueabihf/hdf5/serial -lbwa -lhdf5 -lz -ldl -lm -o /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/_uncalled.cpython-39-arm-linux-gnueabihf.so running build_scripts creating build/scripts-3.9 copying and adjusting scripts/uncalled -> build/scripts-3.9 changing mode of build/scripts-3.9/uncalled from 644 to 755 dh_auto_test -O--buildsystem=pybuild I: pybuild base:232: cd /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build; python3.9 -m unittest discover -v ---------------------------------------------------------------------- Ran 0 tests in 0.000s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/uncalled-2.2+ds/debian/uncalled running install running build running build_py running egg_info writing uncalled.egg-info/PKG-INFO writing dependency_links to uncalled.egg-info/dependency_links.txt writing top-level names to uncalled.egg-info/top_level.txt reading manifest file 'uncalled.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'uncalled.egg-info/SOURCES.txt' running build_ext All submodules present Found libbwa.a Found libhdf5.a running build_scripts running install_lib creating /build/uncalled-2.2+ds/debian/uncalled/usr creating /build/uncalled-2.2+ds/debian/uncalled/usr/lib creating /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9 creating /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages copying /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/_uncalled.cpython-39-arm-linux-gnueabihf.so -> /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages creating /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled creating /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled/conf copying /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled/conf/defaults.toml -> /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled/conf copying /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled/conf/r94_5mers_threshs.txt -> /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled/conf copying /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled/conf/r94_5mers.txt -> /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled/conf copying /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled/minknow_client.py -> /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled copying /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled/index.py -> /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled copying /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled/__init__.py -> /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled copying /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled/args.py -> /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled copying /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled/debug.py -> /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled copying /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled/pafstats.py -> /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled creating /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled/__pycache__ copying /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled/__pycache__/sim_utils.cpython-39.pyc -> /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled/__pycache__ copying /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled/__pycache__/debug.cpython-39.pyc -> /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled/__pycache__ copying /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled/__pycache__/args.cpython-39.pyc -> /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled/__pycache__ copying /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled/__pycache__/pafstats.cpython-39.pyc -> /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled/__pycache__ copying /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled/__pycache__/__init__.cpython-39.pyc -> /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled/__pycache__ copying /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled/__pycache__/index.cpython-39.pyc -> /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled/__pycache__ copying /build/uncalled-2.2+ds/.pybuild/cpython3_3.9_uncalled/build/uncalled/sim_utils.py -> /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled byte-compiling /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled/minknow_client.py to minknow_client.cpython-39.pyc byte-compiling /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled/index.py to index.cpython-39.pyc byte-compiling /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled/__init__.py to __init__.cpython-39.pyc byte-compiling /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled/args.py to args.cpython-39.pyc byte-compiling /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled/debug.py to debug.cpython-39.pyc byte-compiling /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled/pafstats.py to pafstats.cpython-39.pyc byte-compiling /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled/sim_utils.py to sim_utils.cpython-39.pyc running install_egg_info Copying uncalled.egg-info to /build/uncalled-2.2+ds/debian/uncalled/usr/lib/python3.9/dist-packages/uncalled-2.2.egg-info Skipping SOURCES.txt running install_scripts creating /build/uncalled-2.2+ds/debian/uncalled/usr/bin copying build/scripts-3.9/uncalled -> /build/uncalled-2.2+ds/debian/uncalled/usr/bin changing mode of /build/uncalled-2.2+ds/debian/uncalled/usr/bin/uncalled to 755 dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installexamples -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: package uncalled: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package uncalled: substitution variable ${python3:Versions} unused, but is defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'uncalled-dbgsym' in '../uncalled-dbgsym_2.2+ds-1_armhf.deb'. dpkg-deb: building package 'uncalled' in '../uncalled_2.2+ds-1_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../uncalled_2.2+ds-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/13117 and its subdirectories I: Current time: Sat Jul 24 02:41:03 -12 2021 I: pbuilder-time-stamp: 1627137663 Sat Jul 24 14:41:21 UTC 2021 I: 1st build successful. Starting 2nd build on remote node cbxi4b-armhf-rb.debian.net. Sat Jul 24 14:41:21 UTC 2021 I: Preparing to do remote build '2' on cbxi4b-armhf-rb.debian.net. Sat Jul 24 15:19:43 UTC 2021 I: Deleting $TMPDIR on cbxi4b-armhf-rb.debian.net. Sat Jul 24 15:19:46 UTC 2021 I: uncalled_2.2+ds-1_armhf.changes: Format: 1.8 Date: Mon, 08 Feb 2021 09:22:50 +0100 Source: uncalled Binary: uncalled uncalled-dbgsym Architecture: armhf Version: 2.2+ds-1 Distribution: unstable Urgency: high Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: uncalled - Utility for Nanopore Current Alignment to Large Expanses of DNA Changes: uncalled (2.2+ds-1) unstable; urgency=high . * Source-only upload. * Added patch for 32-bit architectures. Checksums-Sha1: 5676ab672a12579cb2998dc5c35c4caf1021a8bf 7509760 uncalled-dbgsym_2.2+ds-1_armhf.deb 39fa5009e17335b36fa11ca08225d95a946f22ee 6553 uncalled_2.2+ds-1_armhf.buildinfo 90ff8e9a1d8cf2cfde95cdb74a14b7d64623393c 499876 uncalled_2.2+ds-1_armhf.deb Checksums-Sha256: 4e7184d33f1017d4dd54ade07e1b14bb0abffa2110d76975c0e61489ce4df2d6 7509760 uncalled-dbgsym_2.2+ds-1_armhf.deb 13415631a8b458ef53ce56cc34ed1526fda8ffbdb6d5b2d61ffe9aa949901a79 6553 uncalled_2.2+ds-1_armhf.buildinfo ddc56a746d4abadfa98a46ee6d5ea9b46a4388d84d4a2bd0e8f7e571f0c9f18f 499876 uncalled_2.2+ds-1_armhf.deb Files: f2f90a7413ea7d35d77017bffeefba2e 7509760 debug optional uncalled-dbgsym_2.2+ds-1_armhf.deb 01ba7c0d12e85fd0a10569e7b2ac8fdd 6553 science optional uncalled_2.2+ds-1_armhf.buildinfo 02a5a8800d1318a593a3d64a076a69c8 499876 science optional uncalled_2.2+ds-1_armhf.deb Sat Jul 24 15:19:47 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.RThNQHptnr/uncalled_2.2+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.RThNQHptnr/uncalled_2.2+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.RThNQHptnr/uncalled_2.2+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.RThNQHptnr/b1/uncalled_2.2+ds-1_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.RThNQHptnr/b2/uncalled_2.2+ds-1_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.359s) 0.359s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.114s) 0.114s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sat Jul 24 15:19:49 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Sat Jul 24 15:19:49 UTC 2021 I: uncalled from bullseye built successfully and reproducibly on armhf. Sat Jul 24 15:19:50 UTC 2021 I: Submitting .buildinfo files to external archives: Sat Jul 24 15:19:50 UTC 2021 I: Submitting 8.0K b1/uncalled_2.2+ds-1_armhf.buildinfo.asc Sat Jul 24 15:19:50 UTC 2021 I: Submitting 8.0K b2/uncalled_2.2+ds-1_armhf.buildinfo.asc Sat Jul 24 15:19:51 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Jul 24 15:19:51 UTC 2021 I: Done submitting .buildinfo files. Sat Jul 24 15:19:51 UTC 2021 I: Removing signed uncalled_2.2+ds-1_armhf.buildinfo.asc files: removed './b1/uncalled_2.2+ds-1_armhf.buildinfo.asc' removed './b2/uncalled_2.2+ds-1_armhf.buildinfo.asc'