Thu Jul 15 08:14:48 UTC 2021 I: starting to build scoary/bullseye/armhf on jenkins on '2021-07-15 08:14' Thu Jul 15 08:14:48 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_6/2148/console.log Thu Jul 15 08:14:48 UTC 2021 I: Downloading source for bullseye/scoary=1.6.16-2 --2021-07-15 08:14:48-- http://cdn-fastly.deb.debian.org/debian/pool/main/s/scoary/scoary_1.6.16-2.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2045 (2.0K) Saving to: ‘scoary_1.6.16-2.dsc’ 0K . 100% 124M=0s 2021-07-15 08:14:48 (124 MB/s) - ‘scoary_1.6.16-2.dsc’ saved [2045/2045] Thu Jul 15 08:14:48 UTC 2021 I: scoary_1.6.16-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: scoary Binary: scoary Architecture: all Version: 1.6.16-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/AdmiralenOla/Scoary Standards-Version: 4.4.0 Vcs-Browser: https://salsa.debian.org/med-team/scoary Vcs-Git: https://salsa.debian.org/med-team/scoary.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12), dh-python, python3-all, python3-setuptools, python3-scipy (>= 0.16), python3-nose Package-List: scoary deb science optional arch=all Checksums-Sha1: 1b1a1fc9b8d59b3d80824638458ab029d2dd566f 1179018 scoary_1.6.16.orig.tar.gz 8839e6611887d9b3f816d58dccde42a5a614ba6d 5692 scoary_1.6.16-2.debian.tar.xz Checksums-Sha256: 3ca5e7102fe462ff9498acd676ae541c3c93856aaefd90659bd5eac17af4a7a9 1179018 scoary_1.6.16.orig.tar.gz 4b5c5b4caaed5516e8fad94e8a26911543b052d685c4a2929eb8d033a365a297 5692 scoary_1.6.16-2.debian.tar.xz Files: a3861f4e58d70d0da5b576d696b5f4fd 1179018 scoary_1.6.16.orig.tar.gz 13f896a7c6ed63742644bb5d5786ca6d 5692 scoary_1.6.16-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl18G80RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGyvw//U9tg55xURYIPVg8yYHnZ5NOgnZV+hvDl EzlMllocfpVyECJv9eRMICi964I6a95mS7T39t0XFzBmMRwC8JB9d9dTDQT60NKT yqjUAM9gzOKvoLUvLjE4tTKeHpTWFILM1kwMzINR0KREOgOsheaBp0OwEYivVFLO RfVfOLi9j8rO/jr7TJ00s0Kj4TtgO0r7B5Ut0XFO5FkEit9/RfkDxdOs+dKE1Pnd lFHzz7nPcUsP6o1SFG8AulF5ww9wsHs43vmfxW3R3I/4ulnB9WHV2xIzQ9axj6Jq 3QOi/0ffqOH/KKKJrgMGenUQcAW4+2u7kKXu3DpgH9UANmfZ0NGBJZnOl2kHg8v9 x99M3uYaj6VWHdAFZOv8kqZes6N0HgqgYqL0XkuPM42ZK4uKVg7sjEXPrI4Av51P Dk/RnCVV8lBF/3suP7AlHuGQpwG4zZ6hIwSf2h/pq9XWOfFPWDgMwusv/GsEMq5e yFDz0C/cMwc/s5cpnB9Tc0i4LCy9ptz70L+gtHusKdjKFeP9b3LawLNvhOvlKKdl gM/fj6ecoNVR92g/f1yzHL3v9MLCJFRq0AY3EoGryAEZMt/xs11cLf8lQrc8HvTC eObvpuBQAP5cPYve9egbAgg+gW4A4E7Bjwmpe2yZIIzQ9bvYuy2yjMfDPeD4fEPf pQgKhMa7DkU= =tuha -----END PGP SIGNATURE----- Thu Jul 15 08:14:48 UTC 2021 I: Checking whether the package is not for us Thu Jul 15 08:14:48 UTC 2021 I: Starting 1st build on remote node virt64b-armhf-rb.debian.net. Thu Jul 15 08:14:48 UTC 2021 I: Preparing to do remote build '1' on virt64b-armhf-rb.debian.net. Thu Jul 15 08:16:23 UTC 2021 I: Deleting $TMPDIR on virt64b-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jul 14 20:14:53 -12 2021 I: pbuilder-time-stamp: 1626336893 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [scoary_1.6.16-2.dsc] I: copying [./scoary_1.6.16.orig.tar.gz] I: copying [./scoary_1.6.16-2.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.qA04TY8s/trustedkeys.kbx': General error gpgv: Signature made Fri Sep 13 10:44:29 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./scoary_1.6.16-2.dsc dpkg-source: info: extracting scoary in scoary-1.6.16 dpkg-source: info: unpacking scoary_1.6.16.orig.tar.gz dpkg-source: info: unpacking scoary_1.6.16-2.debian.tar.xz I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2933/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='c4ad5721ecde4b8fa579bd3f82ed23e6' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2933' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.YQijIuU2lX/pbuilderrc_aOxa --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.YQijIuU2lX/b1 --logfile b1/build.log scoary_1.6.16-2.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:8000/' I: uname -a Linux virt64b 5.10.0-7-arm64 #1 SMP Debian 5.10.40-1 (2021-05-28) aarch64 GNU/Linux I: ls -l /bin total 3580 -rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash -rwxr-xr-x 1 root root 75880 Sep 22 2020 date -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd -rwxr-xr-x 1 root root 59912 Sep 22 2020 df -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir -rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 22496 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln -rwxr-xr-x 1 root root 35068 Feb 7 2020 login -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls -rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 34408 Feb 7 02:38 more -rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount -rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 12 21:25 sh -> dash -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty -rwsr-xr-x 1 root root 46704 Feb 7 02:38 su -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch -rwxr-xr-x 1 root root 22496 Sep 22 2020 true -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir -rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/2933/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), dh-python, python3-all, python3-setuptools, python3-scipy (>= 0.16), python3-nose dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy (>= 0.16); however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on python3-nose; however: Package python3-nose is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libicu67{a} liblapack3{a} liblbfgsb0{a} libmagic-mgc{a} libmagic1{a} libmpdec3{a} libpipeline1{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} po-debconf{a} python3{a} python3-all{a} python3-decorator{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-nose{a} python3-numpy{a} python3-pkg-resources{a} python3-scipy{a} python3-setuptools{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-pil wget 0 packages upgraded, 57 newly installed, 0 to remove and 0 not upgraded. Need to get 40.0 MB of archives. After unpacking 146 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-7 [138 kB] Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB] Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB] Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB] Get: 6 http://deb.debian.org/debian bullseye/main armhf libpython3.9-minimal armhf 3.9.2-1 [790 kB] Get: 7 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2 [76.3 kB] Get: 8 http://deb.debian.org/debian bullseye/main armhf python3.9-minimal armhf 3.9.2-1 [1630 kB] Get: 9 http://deb.debian.org/debian bullseye/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main armhf media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main armhf libmpdec3 armhf 2.5.1-1 [74.9 kB] Get: 12 http://deb.debian.org/debian bullseye/main armhf readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main armhf libreadline8 armhf 8.1-1 [147 kB] Get: 14 http://deb.debian.org/debian bullseye/main armhf libpython3.9-stdlib armhf 3.9.2-1 [1608 kB] Get: 15 http://deb.debian.org/debian bullseye/main armhf python3.9 armhf 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main armhf python3 armhf 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB] Get: 20 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3 [117 kB] Get: 21 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3 [68.1 kB] Get: 22 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB] Get: 23 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB] Get: 24 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB] Get: 25 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB] Get: 26 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB] Get: 28 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB] Get: 29 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB] Get: 30 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB] Get: 31 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 33 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB] Get: 34 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 35 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 36 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB] Get: 37 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB] Get: 38 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB] Get: 39 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [602 kB] Get: 40 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB] Get: 41 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 42 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB] Get: 44 http://deb.debian.org/debian bullseye/main armhf python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 45 http://deb.debian.org/debian bullseye/main armhf python3-distutils all 3.9.2-1 [143 kB] Get: 46 http://deb.debian.org/debian bullseye/main armhf dh-python all 4.20201102+nmu1 [99.4 kB] Get: 47 http://deb.debian.org/debian bullseye/main armhf libblas3 armhf 3.9.0-3 [109 kB] Get: 48 http://deb.debian.org/debian bullseye/main armhf libgfortran5 armhf 10.2.1-6 [237 kB] Get: 49 http://deb.debian.org/debian bullseye/main armhf liblapack3 armhf 3.9.0-3 [1651 kB] Get: 50 http://deb.debian.org/debian bullseye/main armhf liblbfgsb0 armhf 3.0+dfsg.3-9 [24.9 kB] Get: 51 http://deb.debian.org/debian bullseye/main armhf python3-all armhf 3.9.2-3 [1056 B] Get: 52 http://deb.debian.org/debian bullseye/main armhf python3-decorator all 4.4.2-2 [15.8 kB] Get: 53 http://deb.debian.org/debian bullseye/main armhf python3-pkg-resources all 52.0.0-4 [190 kB] Get: 54 http://deb.debian.org/debian bullseye/main armhf python3-nose all 1.3.7-7 [133 kB] Get: 55 http://deb.debian.org/debian bullseye/main armhf python3-numpy armhf 1:1.19.5-1 [2981 kB] Get: 56 http://deb.debian.org/debian bullseye/main armhf python3-scipy armhf 1.6.0-2 [11.3 MB] Get: 57 http://deb.debian.org/debian bullseye/main armhf python3-setuptools all 52.0.0-4 [366 kB] Fetched 40.0 MB in 4s (11.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-7_armhf.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../1-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_armhf.deb ... 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Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20265 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_armhf.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:armhf. 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Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20686 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_armhf.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. 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Setting up libblas3:armhf (3.9.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode Setting up libsigsegv2:armhf (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libgfortran5:armhf (10.2.1-6) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libmpdec3:armhf (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:armhf (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:armhf (2.9.10+dfsg-6.7) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up liblapack3:armhf (3.9.0-3) ... update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libreadline8:armhf (8.1-1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libpython3.9-stdlib:armhf (3.9.2-1) ... Setting up libpython3-stdlib:armhf (3.9.2-3) ... Setting up liblbfgsb0:armhf (3.0+dfsg.3-9) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up python3.9 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-all (3.9.2-3) ... Setting up python3-nose (1.3.7-7) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-scipy (1.6.0-2) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/scoary-1.6.16/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../scoary_1.6.16-2_source.changes dpkg-buildpackage: info: source package scoary dpkg-buildpackage: info: source version 1.6.16-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/scoary-1.6.16/.pybuild/cpython3_3.9/build' (and everything under it) 'build/bdist.linux-armhf' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules build dh build --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary copying scoary/classes.py -> /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary copying scoary/vcf2scoary.py -> /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary copying scoary/methods.py -> /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary copying scoary/GUI.py -> /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary copying scoary/nwkhandler.py -> /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary copying scoary/citation.py -> /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary copying scoary/__init__.py -> /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary running egg_info creating scoary.egg-info writing scoary.egg-info/PKG-INFO writing dependency_links to scoary.egg-info/dependency_links.txt writing entry points to scoary.egg-info/entry_points.txt writing requirements to scoary.egg-info/requires.txt writing top-level names to scoary.egg-info/top_level.txt writing manifest file 'scoary.egg-info/SOURCES.txt' reading manifest file 'scoary.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'scoary.egg-info/SOURCES.txt' creating /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary/exampledata copying scoary/exampledata/Example.vcf -> /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary/exampledata copying scoary/exampledata/ExampleTree.nwk -> /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary/exampledata copying scoary/exampledata/ExampleVCFTrait.csv -> /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary/exampledata copying scoary/exampledata/Gene_presence_absence.csv -> /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary/exampledata copying scoary/exampledata/Restrict_to.csv -> /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary/exampledata copying scoary/exampledata/Tetracycline_resistance.csv -> /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary/exampledata debian/rules override_dh_auto_test make[1]: Entering directory '/build/scoary-1.6.16' echo "Test data are missing so we can not test" Test data are missing so we can not test make[1]: Leaving directory '/build/scoary-1.6.16' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/scoary-1.6.16/debian/scoary running install running build running build_py running egg_info writing scoary.egg-info/PKG-INFO writing dependency_links to scoary.egg-info/dependency_links.txt writing entry points to scoary.egg-info/entry_points.txt writing requirements to scoary.egg-info/requires.txt writing top-level names to scoary.egg-info/top_level.txt reading manifest file 'scoary.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'scoary.egg-info/SOURCES.txt' running install_lib creating /build/scoary-1.6.16/debian/scoary/usr creating /build/scoary-1.6.16/debian/scoary/usr/lib creating /build/scoary-1.6.16/debian/scoary/usr/lib/python3.9 creating /build/scoary-1.6.16/debian/scoary/usr/lib/python3.9/dist-packages creating /build/scoary-1.6.16/debian/scoary/usr/lib/python3.9/dist-packages/scoary copying /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary/classes.py -> /build/scoary-1.6.16/debian/scoary/usr/lib/python3.9/dist-packages/scoary creating /build/scoary-1.6.16/debian/scoary/usr/lib/python3.9/dist-packages/scoary/exampledata copying /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary/exampledata/Tetracycline_resistance.csv -> /build/scoary-1.6.16/debian/scoary/usr/lib/python3.9/dist-packages/scoary/exampledata copying /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary/exampledata/Example.vcf -> /build/scoary-1.6.16/debian/scoary/usr/lib/python3.9/dist-packages/scoary/exampledata copying /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary/exampledata/ExampleVCFTrait.csv -> /build/scoary-1.6.16/debian/scoary/usr/lib/python3.9/dist-packages/scoary/exampledata copying /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary/exampledata/Gene_presence_absence.csv -> /build/scoary-1.6.16/debian/scoary/usr/lib/python3.9/dist-packages/scoary/exampledata copying /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary/exampledata/Restrict_to.csv -> /build/scoary-1.6.16/debian/scoary/usr/lib/python3.9/dist-packages/scoary/exampledata copying /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary/exampledata/ExampleTree.nwk -> /build/scoary-1.6.16/debian/scoary/usr/lib/python3.9/dist-packages/scoary/exampledata copying /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary/vcf2scoary.py -> /build/scoary-1.6.16/debian/scoary/usr/lib/python3.9/dist-packages/scoary copying /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary/methods.py -> /build/scoary-1.6.16/debian/scoary/usr/lib/python3.9/dist-packages/scoary copying /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary/GUI.py -> /build/scoary-1.6.16/debian/scoary/usr/lib/python3.9/dist-packages/scoary copying /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary/nwkhandler.py -> /build/scoary-1.6.16/debian/scoary/usr/lib/python3.9/dist-packages/scoary copying /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary/citation.py -> /build/scoary-1.6.16/debian/scoary/usr/lib/python3.9/dist-packages/scoary copying /build/scoary-1.6.16/.pybuild/cpython3_3.9/build/scoary/__init__.py -> /build/scoary-1.6.16/debian/scoary/usr/lib/python3.9/dist-packages/scoary byte-compiling /build/scoary-1.6.16/debian/scoary/usr/lib/python3.9/dist-packages/scoary/classes.py to classes.cpython-39.pyc byte-compiling /build/scoary-1.6.16/debian/scoary/usr/lib/python3.9/dist-packages/scoary/vcf2scoary.py to vcf2scoary.cpython-39.pyc /usr/lib/python3.9/dist-packages/scoary/vcf2scoary.py:94: SyntaxWarning: "is not" with a literal. Did you mean "!="? /usr/lib/python3.9/dist-packages/scoary/vcf2scoary.py:172: SyntaxWarning: "is not" with a literal. Did you mean "!="? byte-compiling /build/scoary-1.6.16/debian/scoary/usr/lib/python3.9/dist-packages/scoary/methods.py to methods.cpython-39.pyc byte-compiling /build/scoary-1.6.16/debian/scoary/usr/lib/python3.9/dist-packages/scoary/GUI.py to GUI.cpython-39.pyc byte-compiling /build/scoary-1.6.16/debian/scoary/usr/lib/python3.9/dist-packages/scoary/nwkhandler.py to nwkhandler.cpython-39.pyc byte-compiling /build/scoary-1.6.16/debian/scoary/usr/lib/python3.9/dist-packages/scoary/citation.py to citation.cpython-39.pyc byte-compiling /build/scoary-1.6.16/debian/scoary/usr/lib/python3.9/dist-packages/scoary/__init__.py to __init__.cpython-39.pyc running install_egg_info Copying scoary.egg-info to /build/scoary-1.6.16/debian/scoary/usr/lib/python3.9/dist-packages/scoary-1.6.16.egg-info Skipping SOURCES.txt running install_scripts Installing scoary script to /build/scoary-1.6.16/debian/scoary/usr/bin Installing scoary_GUI script to /build/scoary-1.6.16/debian/scoary/usr/bin Installing vcf2scoary script to /build/scoary-1.6.16/debian/scoary/usr/bin dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installinit -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'scoary' in '../scoary_1.6.16-2_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../scoary_1.6.16-2_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2933 and its subdirectories I: Current time: Wed Jul 14 20:16:18 -12 2021 I: pbuilder-time-stamp: 1626336978 Thu Jul 15 08:16:25 UTC 2021 I: 1st build successful. Starting 2nd build on remote node virt32b-armhf-rb.debian.net. Thu Jul 15 08:16:25 UTC 2021 I: Preparing to do remote build '2' on virt32b-armhf-rb.debian.net. Thu Jul 15 08:19:30 UTC 2021 I: Deleting $TMPDIR on virt32b-armhf-rb.debian.net. Thu Jul 15 08:19:32 UTC 2021 I: scoary_1.6.16-2_armhf.changes: Format: 1.8 Date: Sat, 14 Sep 2019 00:37:02 +0200 Source: scoary Binary: scoary Architecture: all Version: 1.6.16-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: scoary - pangenome-wide association studies Closes: 938447 Changes: scoary (1.6.16-2) unstable; urgency=medium . * Switch (Build-)Depends from Python2 to Python3 Closes: #938447 * debhelper-compat 12 * Standards-Version: 4.4.0 Checksums-Sha1: b1fb74d1ee0761c00caf5fbc5acdf7c30a84b532 234840 scoary_1.6.16-2_all.deb 8ec72010908199b13d2f3b761719f23930f3bd13 5310 scoary_1.6.16-2_armhf.buildinfo Checksums-Sha256: 02d0660fec6d3e63c0bdf1d6f1747fe940d562e91f8a8b443a209c715ca3e34d 234840 scoary_1.6.16-2_all.deb 663d1ef96a1f77a44d087f8059ef3069e8c79f88e7dbc682c320d2db175b1402 5310 scoary_1.6.16-2_armhf.buildinfo Files: cd695e9d3d3ce89e55b1ee7acf1d5dbf 234840 science optional scoary_1.6.16-2_all.deb 068353d88f5c4a81ed82736e10dc1c7a 5310 science optional scoary_1.6.16-2_armhf.buildinfo Thu Jul 15 08:19:33 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.YQijIuU2lX/scoary_1.6.16-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.YQijIuU2lX/scoary_1.6.16-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.YQijIuU2lX/scoary_1.6.16-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.YQijIuU2lX/b1/scoary_1.6.16-2_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.YQijIuU2lX/b2/scoary_1.6.16-2_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.294s) 0.294s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.019s) 0.019s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Thu Jul 15 08:19:34 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Thu Jul 15 08:19:34 UTC 2021 I: scoary from bullseye built successfully and reproducibly on armhf. Thu Jul 15 08:19:35 UTC 2021 I: Submitting .buildinfo files to external archives: Thu Jul 15 08:19:35 UTC 2021 I: Submitting 8.0K b1/scoary_1.6.16-2_armhf.buildinfo.asc Thu Jul 15 08:19:37 UTC 2021 I: Submitting 8.0K b2/scoary_1.6.16-2_armhf.buildinfo.asc Thu Jul 15 08:19:39 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jul 15 08:19:39 UTC 2021 I: Done submitting .buildinfo files. Thu Jul 15 08:19:39 UTC 2021 I: Removing signed scoary_1.6.16-2_armhf.buildinfo.asc files: removed './b1/scoary_1.6.16-2_armhf.buildinfo.asc' removed './b2/scoary_1.6.16-2_armhf.buildinfo.asc'