Mon Jul 12 06:28:17 UTC 2021 I: starting to build pilercr/bullseye/armhf on jenkins on '2021-07-12 06:28' Mon Jul 12 06:28:17 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_29/1699/console.log Mon Jul 12 06:28:17 UTC 2021 I: Downloading source for bullseye/pilercr=1.06+dfsg-4 --2021-07-12 06:28:17-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/pilercr/pilercr_1.06+dfsg-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1959 (1.9K) Saving to: ‘pilercr_1.06+dfsg-4.dsc’ 0K . 100% 223M=0s 2021-07-12 06:28:17 (223 MB/s) - ‘pilercr_1.06+dfsg-4.dsc’ saved [1959/1959] Mon Jul 12 06:28:18 UTC 2021 I: pilercr_1.06+dfsg-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: pilercr Binary: pilercr Architecture: any Version: 1.06+dfsg-4 Maintainer: Debian Med Packaging Team Uploaders: Andrius Merkys Homepage: https://www.drive5.com/pilercr/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/pilercr Vcs-Git: https://salsa.debian.org/med-team/pilercr.git Build-Depends: debhelper-compat (= 13), help2man Package-List: pilercr deb science optional arch=any Checksums-Sha1: ec00e5c5e116ca933b7e23d19f8a2a630352a788 80128 pilercr_1.06+dfsg.orig.tar.xz 6d55f2e319747adae9ada4a5cf03bf034c32f95a 3172 pilercr_1.06+dfsg-4.debian.tar.xz Checksums-Sha256: 377d88b76960483a33e4f620bab180e5f994b43e550961ca3e3ea3b77d64ccc9 80128 pilercr_1.06+dfsg.orig.tar.xz 88e8cad55add35811108353318e6139f0142049d93dd8efa49366db0e797e5b7 3172 pilercr_1.06+dfsg-4.debian.tar.xz Files: ba866a26a14562fb2e3c425ad601ca08 80128 pilercr_1.06+dfsg.orig.tar.xz 1fa5f2f89e0cb641810b72fabbd5164d 3172 pilercr_1.06+dfsg-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/aLg8RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtF1/hAAiJNzDf5pCd6j8k1VLKkUaI07yUJl9oJk PNfZhtr2U8i71TxrpUsAq2GXJyKb7RMt0BwlTX3kz6ehWMEGQN+bU5dSG5jgwWcF vpFjR8M3FzG4t0w7PCuSleg8ad78kc6hd5i19Kw24PuS7jjJZ6hk7BzuVopWtQKY fel5i36JW8NdIct0/nzVr1cOMmwitWiS+KcJaDGkL0vp9mb6letFrwYB0ytHEClS KvPt23SBJWjNTN/1GcEfKBZxrYyhpN/8PU8d/w0C5iRoMs3u3K0qaVpAW7raHUjw kR1vpQSPV1qqQtFIYSbM9BoAYZnUBpdwIRffAcH/VtkKDvrZQD96cgpFr+6oXM1X NLT5fX5x6Lz7KMkkpzzgo5yyJUjA5vB9KOmO3TVojgX7Ru63Jdsn0S+N8IdJJW5H 6e+TD1iy+LgexxkKkaiyX7TCLaHeIgyCei0MCnnFXm5NxD6MIHy3jkb+oHpX2PmD UCSYFmWoJjGOAvaA/Wm/Ia8ILH9wCDAl0uv6tnodifMUz9kHkqBXdAe1muvj4dSd OY2k7jCmaY7tsqkPxiaVrlWzOc9TtNuxG3Q4OYkedPCZFua9ZfjocQe1L3auvOGC zto9Qd7K5rnpfJyLMd+/9d+j1++t5sEGz1EdNwmlgYjVEWBxR1XhEuesm+XpAVRM ro6w0VIpb1o= =nOgt -----END PGP SIGNATURE----- Mon Jul 12 06:28:18 UTC 2021 I: Checking whether the package is not for us Mon Jul 12 06:28:18 UTC 2021 I: Starting 1st build on remote node virt32a-armhf-rb.debian.net. Mon Jul 12 06:28:18 UTC 2021 I: Preparing to do remote build '1' on virt32a-armhf-rb.debian.net. Mon Jul 12 06:32:28 UTC 2021 I: Deleting $TMPDIR on virt32a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jul 11 18:28:28 -12 2021 I: pbuilder-time-stamp: 1626071308 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pilercr_1.06+dfsg-4.dsc] I: copying [./pilercr_1.06+dfsg.orig.tar.xz] I: copying [./pilercr_1.06+dfsg-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.J3hiYErd/trustedkeys.kbx': General error gpgv: Signature made Wed Dec 16 03:55:59 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./pilercr_1.06+dfsg-4.dsc dpkg-source: info: extracting pilercr in pilercr-1.06+dfsg dpkg-source: info: unpacking pilercr_1.06+dfsg.orig.tar.xz dpkg-source: info: unpacking pilercr_1.06+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_unix_builds.patch dpkg-source: info: applying no-static.patch dpkg-source: info: applying debugsymbols.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1917/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='2746b967479646fc8c8d8e07cd61bccb' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1917' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.zreael765G/pbuilderrc_yhNq --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.zreael765G/b1 --logfile b1/build.log pilercr_1.06+dfsg-4.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:8000/' I: uname -a Linux virt32a 5.10.0-7-armmp-lpae #1 SMP Debian 5.10.40-1 (2021-05-28) armv7l GNU/Linux I: ls -l /bin total 3580 -rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash -rwxr-xr-x 1 root root 75880 Sep 22 2020 date -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd -rwxr-xr-x 1 root root 59912 Sep 22 2020 df -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir -rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 22496 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln -rwxr-xr-x 1 root root 35068 Feb 7 2020 login -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls -rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 34408 Feb 7 02:38 more -rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount -rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 9 21:26 sh -> dash -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty -rwsr-xr-x 1 root root 46704 Feb 7 02:38 su -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch -rwxr-xr-x 1 root root 22496 Sep 22 2020 true -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir -rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/1917/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu67{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 17.9 MB of archives. After unpacking 63.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-7 [138 kB] Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB] Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB] Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB] Get: 6 http://deb.debian.org/debian bullseye/main armhf liblocale-gettext-perl armhf 1.07-4+b1 [18.3 kB] Get: 7 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB] Get: 9 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3 [117 kB] Get: 10 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3 [68.1 kB] Get: 11 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB] Get: 12 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB] Get: 13 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB] Get: 14 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB] Get: 15 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 16 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB] Get: 17 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB] Get: 18 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB] Get: 19 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB] Get: 20 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB] Get: 23 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 24 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 25 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB] Get: 26 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB] Get: 27 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB] Get: 28 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [602 kB] Get: 29 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB] Get: 30 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 31 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB] Get: 33 http://deb.debian.org/debian bullseye/main armhf help2man armhf 1.48.1 [190 kB] Fetched 17.9 MB in 4s (4931 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_armhf.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../01-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_armhf.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../03-libpipeline1_1.5.3-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_armhf.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../05-liblocale-gettext-perl_1.07-4+b1_armhf.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.39-3_armhf.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:armhf. Preparing to unpack .../08-libmagic1_1%3a5.39-3_armhf.deb ... Unpacking libmagic1:armhf (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../09-file_1%3a5.39-3_armhf.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../10-gettext-base_0.21-4_armhf.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:armhf. Preparing to unpack .../11-libsigsegv2_2.13-1_armhf.deb ... Unpacking libsigsegv2:armhf (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.18-5_armhf.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../21-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_1.11.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.11.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_1.11.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.11.0-1) ... Selecting previously unselected package libelf1:armhf. Preparing to unpack .../24-libelf1_0.183-1_armhf.deb ... Unpacking libelf1:armhf (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.13+20210201-1_armhf.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:armhf. Preparing to unpack .../26-libicu67_67.1-7_armhf.deb ... Unpacking libicu67:armhf (67.1-7) ... Selecting previously unselected package libxml2:armhf. Preparing to unpack .../27-libxml2_2.9.10+dfsg-6.7_armhf.deb ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/pilercr-1.06+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pilercr_1.06+dfsg-4_source.changes dpkg-buildpackage: info: source package pilercr dpkg-buildpackage: info: source version 1.06+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Helmut Grohne dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/pilercr-1.06+dfsg' rm -f *.o pilercr pilercr.1 make[1]: Leaving directory '/build/pilercr-1.06+dfsg' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/pilercr-1.06+dfsg' dpkg-architecture -f -aarmhf -c dh_auto_build -- 'GPP=$(CXX)' make -j3 "INSTALL=install --strip-program=true" GPP=\$\(CXX\) make[2]: Entering directory '/build/pilercr-1.06+dfsg' g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c acceptaa.cpp -o acceptaa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c accepthit.cpp -o accepthit.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c alignarrays.cpp -o alignarrays.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c alignclust.cpp -o alignclust.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c alignprofs.cpp -o alignprofs.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c aligntraps.cpp -o aligntraps.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c alnarray.cpp -o alnarray.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c alngivenpath.cpp -o alngivenpath.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c alpha.cpp -o alpha.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c assert.cpp -o assert.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c bittb.cpp -o bittb.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c clustcons.cpp -o clustcons.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c clustconsr.cpp -o clustconsr.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c cmp.cpp -o cmp.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c comp.cpp -o comp.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c cons.cpp -o cons.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c distcalc.cpp -o distcalc.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c distfunc.cpp -o distfunc.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c dp.cpp -o dp.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c estring.cpp -o estring.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c expandpiles.cpp -o expandpiles.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c filterb.cpp -o filterb.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c filterb2.cpp -o filterb2.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c findarrays.cpp -o findarrays.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c findpiles.cpp -o findpiles.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c fixbounds.cpp -o fixbounds.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c getarraydata.cpp -o getarraydata.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c getccs.cpp -o getccs.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c getconsaa.cpp -o getconsaa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c getgdtree.cpp -o getgdtree.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c getparams.cpp -o getparams.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c getsubseq.cpp -o getsubseq.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c glbalign.cpp -o glbalign.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c hitstoimages.cpp -o hitstoimages.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c info.cpp -o info.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c kmerdist.cpp -o kmerdist.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c log.cpp -o log.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c logaa.cpp -o logaa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c loghits.cpp -o loghits.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c main.cpp -o main.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c makecontigmap.cpp -o makecontigmap.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c makegraph.cpp -o makegraph.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c makeindex.cpp -o makeindex.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c mem.cpp -o mem.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c mergearrays.cpp -o mergearrays.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c mergefilterhits.cpp -o mergefilterhits.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c mkrootmsa.cpp -o mkrootmsa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c msa.cpp -o msa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c multaln.cpp -o multaln.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c options.cpp -o options.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c outarray.cpp -o outarray.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c outdetail.cpp -o outdetail.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c outdetailaa.cpp -o outdetailaa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c outlocalaln.cpp -o outlocalaln.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c params.cpp -o params.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c pilercr.cpp -o pilercr.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c proffrommsa.cpp -o proffrommsa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c progaln.cpp -o progaln.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c progress.cpp -o progress.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c pwpath.cpp -o pwpath.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c quit.cpp -o quit.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c readfilterhits.cpp -o readfilterhits.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c readmfa.cpp -o readmfa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c revcomp.cpp -o revcomp.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c savefhits.cpp -o savefhits.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c savefilterhit.cpp -o savefilterhit.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c saveseqs.cpp -o saveseqs.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c savetraps.cpp -o savetraps.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c scoremx.cpp -o scoremx.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c seq.cpp -o seq.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c seqvect.cpp -o seqvect.o savetraps.cpp: In function 'void SaveTrap(FILE*, const Trapezoid&)': savetraps.cpp:14:69: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 14 | WriteGFFRecord(f, QueryFrom, QueryTo, TargetFrom, TargetTo, false, "trap", 0, 0); | ^~~~~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c swsimple.cpp -o swsimple.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c tbsw.cpp -o tbsw.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c tree.cpp -o tree.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c upgma.cpp -o upgma.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c usage.cpp -o usage.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c utils.cpp -o utils.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c utils_linux.cpp -o utils_linux.o In file included from pilercr.h:38, from utils.cpp:1: utils.cpp: In function 'char* StdioStrMode(FILEIO_MODE)': types.h:113:33: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 113 | #define FILIO_STRMODE_ReadOnly "r" | ^~~ utils.cpp:62:10: note: in expansion of macro 'FILIO_STRMODE_ReadOnly' 62 | return FILIO_STRMODE_ReadOnly; | ^~~~~~~~~~~~~~~~~~~~~~ types.h:114:34: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 114 | #define FILIO_STRMODE_WriteOnly "w" | ^~~ utils.cpp:64:10: note: in expansion of macro 'FILIO_STRMODE_WriteOnly' 64 | return FILIO_STRMODE_WriteOnly; | ^~~~~~~~~~~~~~~~~~~~~~~ types.h:115:34: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 115 | #define FILIO_STRMODE_ReadWrite "w+" | ^~~~ utils.cpp:66:10: note: in expansion of macro 'FILIO_STRMODE_ReadWrite' 66 | return FILIO_STRMODE_ReadWrite; | ^~~~~~~~~~~~~~~~~~~~~~~ utils.cpp:69:9: warning: ISO C++ forbids converting a string constant to 'char*' [-Wwrite-strings] 69 | return "r"; | ^~~ g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c utils_other.cpp -o utils_other.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c utils_unix.cpp -o utils_unix.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c utils_win32.cpp -o utils_win32.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c validaa.cpp -o validaa.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c writearrays.cpp -o writearrays.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c writegff.cpp -o writegff.o g++ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -c writepiles.cpp -o writepiles.o g++ -g -O2 -fdebug-prefix-map=/build/pilercr-1.06+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o pilercr acceptaa.o accepthit.o alignarrays.o alignclust.o alignprofs.o aligntraps.o alnarray.o alngivenpath.o alpha.o assert.o bittb.o clustcons.o clustconsr.o cmp.o comp.o cons.o distcalc.o distfunc.o dp.o estring.o expandpiles.o filterb.o filterb2.o findarrays.o findpiles.o fixbounds.o getarraydata.o getccs.o getconsaa.o getgdtree.o getparams.o getsubseq.o glbalign.o hitstoimages.o info.o kmerdist.o log.o logaa.o loghits.o main.o makecontigmap.o makegraph.o makeindex.o mem.o mergearrays.o mergefilterhits.o mkrootmsa.o msa.o multaln.o options.o outarray.o outdetail.o outdetailaa.o outlocalaln.o params.o pilercr.o proffrommsa.o progaln.o progress.o pwpath.o quit.o readfilterhits.o readmfa.o revcomp.o savefhits.o savefilterhit.o saveseqs.o savetraps.o scoremx.o seq.o seqvect.o swsimple.o tbsw.o tree.o upgma.o usage.o utils.o utils_linux.o utils_other.o utils_unix.o utils_win32.o validaa.o writearrays.o writegff.o writepiles.o -lm make[2]: Leaving directory '/build/pilercr-1.06+dfsg' help2man ./pilercr \ --name 'software for finding CRISPR repeats' \ --help-option '-options' --no-discard-stderr \ --version-string 1.06+dfsg \ --no-info > pilercr.1 make[1]: Leaving directory '/build/pilercr-1.06+dfsg' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/pilercr/usr/bin/pilercr contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'pilercr-dbgsym' in '../pilercr-dbgsym_1.06+dfsg-4_armhf.deb'. dpkg-deb: building package 'pilercr' in '../pilercr_1.06+dfsg-4_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../pilercr_1.06+dfsg-4_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1917 and its subdirectories I: Current time: Sun Jul 11 18:32:21 -12 2021 I: pbuilder-time-stamp: 1626071541 Mon Jul 12 06:32:30 UTC 2021 I: 1st build successful. Starting 2nd build on remote node virt64a-armhf-rb.debian.net. Mon Jul 12 06:32:30 UTC 2021 I: Preparing to do remote build '2' on virt64a-armhf-rb.debian.net. Mon Jul 12 06:34:39 UTC 2021 I: Deleting $TMPDIR on virt64a-armhf-rb.debian.net. Mon Jul 12 06:34:41 UTC 2021 I: pilercr_1.06+dfsg-4_armhf.changes: Format: 1.8 Date: Tue, 15 Dec 2020 15:37:19 +0100 Source: pilercr Binary: pilercr pilercr-dbgsym Architecture: armhf Version: 1.06+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Helmut Grohne Description: pilercr - software for finding CRISPR repeats Closes: 977482 Changes: pilercr (1.06+dfsg-4) unstable; urgency=medium . * Team upload. * Fix FTCBFS: (Closes: #977482) + Pass C++ compiler as GPP variable. + Add native build pass for help2man. Checksums-Sha1: d6897be84c1351deffa24de24a86d6df4b7e47b5 1110384 pilercr-dbgsym_1.06+dfsg-4_armhf.deb ceb73918f1b8235c46c55bd6ef65347a960b72ad 4841 pilercr_1.06+dfsg-4_armhf.buildinfo 9a2ac8498fb781d9c2761aa8a25d5ca48476b900 93940 pilercr_1.06+dfsg-4_armhf.deb Checksums-Sha256: 849f4e79f05e0d91c69e0f2ffd35e9ae085e7ef57b41e67b0e29fb19cd14c824 1110384 pilercr-dbgsym_1.06+dfsg-4_armhf.deb dd93efa1234bb7ef5e93a03349454479bd8e00d4aaacf1845b30fa52be32a849 4841 pilercr_1.06+dfsg-4_armhf.buildinfo de373c11ecd76451f17266bbee11ac75fd3d86dea6153797021cf03454f729ee 93940 pilercr_1.06+dfsg-4_armhf.deb Files: 61eafd0f874bd7abd09ef310f5487519 1110384 debug optional pilercr-dbgsym_1.06+dfsg-4_armhf.deb dbde8c57a69203844eeb72e3d79ff22c 4841 science optional pilercr_1.06+dfsg-4_armhf.buildinfo 05bd44ca5f5214792eca94b31e889041 93940 science optional pilercr_1.06+dfsg-4_armhf.deb Mon Jul 12 06:34:42 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.zreael765G/pilercr_1.06+dfsg-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.zreael765G/pilercr_1.06+dfsg-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.zreael765G/pilercr_1.06+dfsg-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.zreael765G/b1/pilercr_1.06+dfsg-4_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.zreael765G/b2/pilercr_1.06+dfsg-4_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.272s) 0.272s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.027s) 0.027s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Mon Jul 12 06:34:43 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Mon Jul 12 06:34:43 UTC 2021 I: pilercr from bullseye built successfully and reproducibly on armhf. Mon Jul 12 06:34:44 UTC 2021 I: Submitting .buildinfo files to external archives: Mon Jul 12 06:34:44 UTC 2021 I: Submitting 8.0K b1/pilercr_1.06+dfsg-4_armhf.buildinfo.asc Mon Jul 12 06:34:46 UTC 2021 I: Submitting 8.0K b2/pilercr_1.06+dfsg-4_armhf.buildinfo.asc Mon Jul 12 06:34:47 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Jul 12 06:34:47 UTC 2021 I: Done submitting .buildinfo files. Mon Jul 12 06:34:47 UTC 2021 I: Removing signed pilercr_1.06+dfsg-4_armhf.buildinfo.asc files: removed './b1/pilercr_1.06+dfsg-4_armhf.buildinfo.asc' removed './b2/pilercr_1.06+dfsg-4_armhf.buildinfo.asc'