Mon Jul 19 02:12:19 UTC 2021 I: starting to build ngs-sdk/bullseye/armhf on jenkins on '2021-07-19 02:12' Mon Jul 19 02:12:19 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_41/1099/console.log Mon Jul 19 02:12:19 UTC 2021 I: Downloading source for bullseye/ngs-sdk=2.10.9-1 --2021-07-19 02:12:19-- http://cdn-fastly.deb.debian.org/debian/pool/main/n/ngs-sdk/ngs-sdk_2.10.9-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2299 (2.2K) Saving to: ‘ngs-sdk_2.10.9-1.dsc’ 0K .. 100% 72.7M=0s 2021-07-19 02:12:19 (72.7 MB/s) - ‘ngs-sdk_2.10.9-1.dsc’ saved [2299/2299] Mon Jul 19 02:12:19 UTC 2021 I: ngs-sdk_2.10.9-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ngs-sdk Binary: libngs-sdk2, libngs-sdk-dev, libngs-java, python3-ngs Architecture: any Version: 2.10.9-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Olivier Sallou , Vincent Danjean Homepage: https://github.com/ncbi/ngs Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/ngs-sdk Vcs-Git: https://salsa.debian.org/med-team/ngs-sdk.git Build-Depends: debhelper-compat (= 13), d-shlibs, markdown , python3-all, python3-distutils, dh-python, javahelper, maven-repo-helper, default-jdk Package-List: libngs-java deb java optional arch=any libngs-sdk-dev deb libdevel optional arch=any libngs-sdk2 deb libs optional arch=any python3-ngs deb python optional arch=any Checksums-Sha1: f4680d28935b29cb60f35f9ce4fb2d2c2aa2c4de 1099992 ngs-sdk_2.10.9.orig.tar.gz 9543d4184660a30e7e7959764f590db327f50565 11836 ngs-sdk_2.10.9-1.debian.tar.xz Checksums-Sha256: 1372695af5ac2599c9dad0b8cdce857c95c7827ff831a6709343276a29438b1e 1099992 ngs-sdk_2.10.9.orig.tar.gz e0f4004dbda56c241fa3ae47fd98ea61612868a6baf0c050d0e62a69193ce9b7 11836 ngs-sdk_2.10.9-1.debian.tar.xz Files: 353a146863b3db8bc071fb4f0946dcbb 1099992 ngs-sdk_2.10.9.orig.tar.gz 467930900e782653a8282f1e94f6cbaf 11836 ngs-sdk_2.10.9-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmAEfloRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHNxBAAlSGr44x94HtxKKUiW2woNtTZ2Y2mv1cI JW+Uzn/Z6V7B28uoClXpc2fYINY1pyHzJI6Sx2rMQm02jA03bQ6ctSBNUp0/EBG/ /sbQQ+lpDMMpIw9r5cS2As24L/hYbDBuR+AexutQ6ussg5Ch4wTj5XUeMo9rANFY LrDIXAMVA+9GsQLKfryAxEsQj/exTpLfodweLsn3beOiikQiAoB+mWFkcEzZWEDB TgBHwVjCCY1v2Wx8JHXFdpc9/fkdvqCf6lWsWA4PN+zZ0kypWUk3CPky0v38A1L/ VxPrVa3NdSFNa19qg97R5vl0cfsgfHrdcb922U6ec68XSVhyBRN2P4tBLVr/DBK7 QFnQKK4saZ/ssebJm0mXMwNorVtqi72AT4wv5pmwXiJTNKyfPv7qxz1qnaU/1Eaz aAQEO0yP2JDkw35uuKpH0ZKvy7MBKpAZ3OR+OOfLSklkfhAip7k9AdMK0bIwhPTx oBQ9zTCoxJ8X3EI3uO7pufwBMQFmGtUszLPY0fEPqYVkIPhq+0RSzCH0L/zijtz8 kyWvrq767ahw66UK5/10RbKaCf8vFGlL/Rz/jhxlQtpqqGlLTIQRunGafsgAHOzZ N5e8KxThJiILMRorWGA3cOL6wB7JhUQercRlZrmZc0+MdxeYOoblemBxWwyg+e3k a4aoffdty1k= =PCxa -----END PGP SIGNATURE----- Mon Jul 19 02:12:19 UTC 2021 I: Checking whether the package is not for us Mon Jul 19 02:12:19 UTC 2021 I: Starting 1st build on remote node virt64a-armhf-rb.debian.net. Mon Jul 19 02:12:19 UTC 2021 I: Preparing to do remote build '1' on virt64a-armhf-rb.debian.net. Mon Jul 19 02:16:36 UTC 2021 I: Deleting $TMPDIR on virt64a-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Jul 18 14:12:25 -12 2021 I: pbuilder-time-stamp: 1626660745 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ngs-sdk_2.10.9-1.dsc] I: copying [./ngs-sdk_2.10.9.orig.tar.gz] I: copying [./ngs-sdk_2.10.9-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.wzT2F_22/trustedkeys.kbx': General error gpgv: Signature made Sun Jan 17 06:13:46 2021 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ngs-sdk_2.10.9-1.dsc dpkg-source: info: extracting ngs-sdk in ngs-sdk-2.10.9 dpkg-source: info: unpacking ngs-sdk_2.10.9.orig.tar.gz dpkg-source: info: unpacking ngs-sdk_2.10.9-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_jni.patch dpkg-source: info: applying do_not_exclude_certain_architectures_explicitly.patch dpkg-source: info: applying fallback-on-generic-atomic32.patch dpkg-source: info: applying enable-ppc64el.patch dpkg-source: info: applying more_archs I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/5573/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='a169725d2e024bb3bc25d299d3d1cfea' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='5573' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.2ifjnnkNhs/pbuilderrc_uXtX --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.2ifjnnkNhs/b1 --logfile b1/build.log ngs-sdk_2.10.9-1.dsc' SUDO_GID='114' SUDO_UID='108' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:8000/' I: uname -a Linux virt64a 5.10.0-7-arm64 #1 SMP Debian 5.10.40-1 (2021-05-28) aarch64 GNU/Linux I: ls -l /bin total 3580 -rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash -rwxr-xr-x 1 root root 75880 Sep 22 2020 date -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd -rwxr-xr-x 1 root root 59912 Sep 22 2020 df -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir -rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 22496 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln -rwxr-xr-x 1 root root 35068 Feb 7 2020 login -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls -rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 34408 Feb 7 02:38 more -rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount -rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 16 21:27 sh -> dash -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty -rwsr-xr-x 1 root root 46704 Feb 7 02:38 su -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch -rwxr-xr-x 1 root root 22496 Sep 22 2020 true -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir -rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/5573/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, markdown, python3-all, python3-distutils, dh-python, javahelper, maven-repo-helper, default-jdk dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on markdown; however: Package markdown is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-distutils; however: Package python3-distutils is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on javahelper; however: Package javahelper is not installed. pbuilder-satisfydepends-dummy depends on maven-repo-helper; however: Package maven-repo-helper is not installed. pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} d-shlibs{a} dctrl-tools{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gnupg-utils{a} gpg{a} gpg-agent{a} gpg-wks-client{a} gpg-wks-server{a} gpgconf{a} gpgsm{a} groff-base{a} intltool-debian{a} java-common{a} javahelper{a} libarchive-zip-perl{a} libasound2{a} libasound2-data{a} libassuan0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libb-hooks-op-check-perl{a} libbrotli1{a} libbsd0{a} libclass-method-modifiers-perl{a} libcups2{a} libdbus-1-3{a} libdebhelper-perl{a} libdevel-callchecker-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libelf1{a} libencode-locale-perl{a} libexpat1{a} libfile-dirlist-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-touch-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libharfbuzz0b{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu67{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libjpeg62-turbo{a} libksba8{a} liblcms2-2{a} libldap-2.4-2{a} libllvm11{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmodule-runtime-perl{a} libmoo-perl{a} libmpdec3{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnpth0{a} libnspr4{a} libnss3{a} libparams-classify-perl{a} libpcsclite1{a} libpipeline1{a} libpng16-16{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} librole-tiny-perl{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsigsegv2{a} libstrictures-perl{a} libsub-override-perl{a} libsub-quote-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvulkan1{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxml2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} markdown{a} maven-repo-helper{a} media-types{a} netbase{a} openjdk-11-jdk{a} openjdk-11-jdk-headless{a} openjdk-11-jre{a} openjdk-11-jre-headless{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} ucf{a} wdiff{a} x11-common{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf curl dbus debian-keyring dput dput-ng dupload equivs fonts-dejavu-extra libarchive-cpio-perl libatk-wrapper-java-jni libclass-xsaccessor-perl libclone-perl libdata-dump-perl libdistro-info-perl libgit-wrapper-perl libgitlab-api-v4-perl libglib2.0-data libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libldap-common liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnamespace-clean-perl libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libsub-name-perl libxt-dev licensecheck lintian lynx mesa-vulkan-drivers pristine-tar python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg shared-mime-info strace unzip wget xdg-user-dirs 0 packages upgraded, 187 newly installed, 0 to remove and 0 not upgraded. Need to get 288 MB of archives. After unpacking 571 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-7 [138 kB] Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB] Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB] Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB] Get: 6 http://deb.debian.org/debian bullseye/main armhf libpython3.9-minimal armhf 3.9.2-1 [790 kB] Get: 7 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2 [76.3 kB] Get: 8 http://deb.debian.org/debian bullseye/main armhf python3.9-minimal armhf 3.9.2-1 [1630 kB] Get: 9 http://deb.debian.org/debian bullseye/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main armhf media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main armhf libmpdec3 armhf 2.5.1-1 [74.9 kB] Get: 12 http://deb.debian.org/debian bullseye/main armhf readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main armhf libreadline8 armhf 8.1-1 [147 kB] Get: 14 http://deb.debian.org/debian bullseye/main armhf libpython3.9-stdlib armhf 3.9.2-1 [1608 kB] Get: 15 http://deb.debian.org/debian bullseye/main armhf python3.9 armhf 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main armhf python3 armhf 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main armhf netbase all 6.3 [19.9 kB] Get: 19 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB] Get: 20 http://deb.debian.org/debian bullseye/main armhf openssl armhf 1.1.1k-1 [826 kB] Get: 21 http://deb.debian.org/debian bullseye/main armhf ca-certificates all 20210119 [158 kB] Get: 22 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB] Get: 23 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3 [117 kB] Get: 24 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3 [68.1 kB] Get: 25 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB] Get: 26 http://deb.debian.org/debian bullseye/main armhf ucf all 3.0043 [74.0 kB] Get: 27 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB] Get: 28 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB] Get: 29 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB] Get: 30 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 31 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB] Get: 32 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB] Get: 33 http://deb.debian.org/debian bullseye/main armhf java-common all 0.72 [14.5 kB] Get: 34 http://deb.debian.org/debian bullseye/main armhf libavahi-common-data armhf 0.8-5 [123 kB] Get: 35 http://deb.debian.org/debian bullseye/main armhf libavahi-common3 armhf 0.8-5 [55.1 kB] Get: 36 http://deb.debian.org/debian bullseye/main armhf libdbus-1-3 armhf 1.12.20-2 [196 kB] Get: 37 http://deb.debian.org/debian bullseye/main armhf libavahi-client3 armhf 0.8-5 [58.5 kB] Get: 38 http://deb.debian.org/debian bullseye/main armhf libcups2 armhf 2.3.3op2-3+deb11u1 [317 kB] Get: 39 http://deb.debian.org/debian bullseye/main armhf liblcms2-2 armhf 2.12~rc1-2 [123 kB] Get: 40 http://deb.debian.org/debian bullseye/main armhf libjpeg62-turbo armhf 1:2.0.6-4 [123 kB] Get: 41 http://deb.debian.org/debian bullseye/main armhf libbrotli1 armhf 1.0.9-2+b2 [262 kB] Get: 42 http://deb.debian.org/debian bullseye/main armhf libpng16-16 armhf 1.6.37-3 [277 kB] Get: 43 http://deb.debian.org/debian bullseye/main armhf libfreetype6 armhf 2.10.4+dfsg-1 [357 kB] Get: 44 http://deb.debian.org/debian bullseye/main armhf fonts-dejavu-core all 2.37-2 [1069 kB] Get: 45 http://deb.debian.org/debian bullseye/main armhf fontconfig-config all 2.13.1-4.2 [281 kB] Get: 46 http://deb.debian.org/debian bullseye/main armhf libfontconfig1 armhf 2.13.1-4.2 [329 kB] Get: 47 http://deb.debian.org/debian bullseye/main armhf libnspr4 armhf 2:4.29-1 [90.7 kB] Get: 48 http://deb.debian.org/debian bullseye/main armhf libnss3 armhf 2:3.61-1 [1114 kB] Get: 49 http://deb.debian.org/debian bullseye/main armhf libasound2-data all 1.2.4-1.1 [38.2 kB] Get: 50 http://deb.debian.org/debian bullseye/main armhf libasound2 armhf 1.2.4-1.1 [310 kB] Get: 51 http://deb.debian.org/debian bullseye/main armhf libglib2.0-0 armhf 2.66.8-1 [1206 kB] Get: 52 http://deb.debian.org/debian bullseye/main armhf libgraphite2-3 armhf 1.3.14-1 [70.5 kB] Get: 53 http://deb.debian.org/debian bullseye/main armhf libharfbuzz0b armhf 2.7.4-1 [1427 kB] Get: 54 http://deb.debian.org/debian bullseye/main armhf libpcsclite1 armhf 1.9.1-1 [57.2 kB] Get: 55 http://deb.debian.org/debian bullseye/main armhf openjdk-11-jre-headless armhf 11.0.11+9-1 [32.9 MB] Get: 56 http://deb.debian.org/debian bullseye/main armhf default-jre-headless armhf 2:1.11-72 [10.9 kB] Get: 57 http://deb.debian.org/debian bullseye/main armhf ca-certificates-java all 20190909 [15.7 kB] Get: 58 http://deb.debian.org/debian bullseye/main armhf d-shlibs all 0.98 [17.9 kB] Get: 59 http://deb.debian.org/debian bullseye/main armhf dctrl-tools armhf 2.24-3 [96.0 kB] Get: 60 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB] Get: 61 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB] Get: 62 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB] Get: 63 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 64 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB] Get: 65 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 66 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 67 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB] Get: 68 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB] Get: 69 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB] Get: 70 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [602 kB] Get: 71 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB] Get: 72 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 73 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 74 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB] Get: 75 http://deb.debian.org/debian bullseye/main armhf libglvnd0 armhf 1.3.2-1 [51.8 kB] Get: 76 http://deb.debian.org/debian bullseye/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 77 http://deb.debian.org/debian bullseye/main armhf libmd0 armhf 1.0.3-3 [27.4 kB] Get: 78 http://deb.debian.org/debian bullseye/main armhf libbsd0 armhf 0.11.3-1 [103 kB] Get: 79 http://deb.debian.org/debian bullseye/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 80 http://deb.debian.org/debian bullseye/main armhf libxcb1 armhf 1.14-3 [136 kB] Get: 81 http://deb.debian.org/debian bullseye/main armhf libx11-data all 2:1.7.1-1 [310 kB] Get: 82 http://deb.debian.org/debian bullseye/main armhf libx11-6 armhf 2:1.7.1-1 [712 kB] Get: 83 http://deb.debian.org/debian bullseye/main armhf libdrm-common all 2.4.104-1 [14.9 kB] Get: 84 http://deb.debian.org/debian bullseye/main armhf libdrm2 armhf 2.4.104-1 [37.7 kB] Get: 85 http://deb.debian.org/debian bullseye/main armhf libglapi-mesa armhf 20.3.4-1 [80.2 kB] Get: 86 http://deb.debian.org/debian bullseye/main armhf libx11-xcb1 armhf 2:1.7.1-1 [203 kB] Get: 87 http://deb.debian.org/debian bullseye/main armhf libxcb-dri2-0 armhf 1.14-3 [103 kB] Get: 88 http://deb.debian.org/debian bullseye/main armhf libxcb-dri3-0 armhf 1.14-3 [102 kB] Get: 89 http://deb.debian.org/debian bullseye/main armhf libxcb-glx0 armhf 1.14-3 [116 kB] Get: 90 http://deb.debian.org/debian bullseye/main armhf libxcb-present0 armhf 1.14-3 [101 kB] Get: 91 http://deb.debian.org/debian bullseye/main armhf libxcb-shm0 armhf 1.14-3 [101 kB] Get: 92 http://deb.debian.org/debian bullseye/main armhf libxcb-sync1 armhf 1.14-3 [104 kB] Get: 93 http://deb.debian.org/debian bullseye/main armhf libxcb-xfixes0 armhf 1.14-3 [105 kB] Get: 94 http://deb.debian.org/debian bullseye/main armhf libxdamage1 armhf 1:1.1.5-2 [15.1 kB] Get: 95 http://deb.debian.org/debian bullseye/main armhf libxext6 armhf 2:1.3.3-1.1 [47.8 kB] Get: 96 http://deb.debian.org/debian bullseye/main armhf libxfixes3 armhf 1:5.0.3-2 [20.6 kB] Get: 97 http://deb.debian.org/debian bullseye/main armhf libxshmfence1 armhf 1.3-1 [8592 B] Get: 98 http://deb.debian.org/debian bullseye/main armhf libxxf86vm1 armhf 1:1.1.4-1+b2 [20.2 kB] Get: 99 http://deb.debian.org/debian bullseye/main armhf libdrm-amdgpu1 armhf 2.4.104-1 [27.1 kB] Get: 100 http://deb.debian.org/debian bullseye/main armhf libdrm-nouveau2 armhf 2.4.104-1 [24.6 kB] Get: 101 http://deb.debian.org/debian bullseye/main armhf libdrm-radeon1 armhf 2.4.104-1 [27.6 kB] Get: 102 http://deb.debian.org/debian bullseye/main armhf libedit2 armhf 3.1-20191231-2+b1 [81.1 kB] Get: 103 http://deb.debian.org/debian bullseye/main armhf libz3-4 armhf 4.8.10-1 [5959 kB] Get: 104 http://deb.debian.org/debian bullseye/main armhf libllvm11 armhf 1:11.0.1-2 [15.4 MB] Get: 105 http://deb.debian.org/debian bullseye/main armhf libsensors-config all 1:3.6.0-7 [32.3 kB] Get: 106 http://deb.debian.org/debian bullseye/main armhf libsensors5 armhf 1:3.6.0-7 [49.6 kB] Get: 107 http://deb.debian.org/debian bullseye/main armhf libvulkan1 armhf 1.2.162.0-1 [84.3 kB] Get: 108 http://deb.debian.org/debian bullseye/main armhf libgl1-mesa-dri armhf 20.3.4-1 [6037 kB] Get: 109 http://deb.debian.org/debian bullseye/main armhf libglx-mesa0 armhf 20.3.4-1 [167 kB] Get: 110 http://deb.debian.org/debian bullseye/main armhf libglx0 armhf 1.3.2-1 [32.8 kB] Get: 111 http://deb.debian.org/debian bullseye/main armhf libgl1 armhf 1.3.2-1 [94.3 kB] Get: 112 http://deb.debian.org/debian bullseye/main armhf libgif7 armhf 5.1.9-2 [42.7 kB] Get: 113 http://deb.debian.org/debian bullseye/main armhf libxi6 armhf 2:1.7.10-1 [78.5 kB] Get: 114 http://deb.debian.org/debian bullseye/main armhf libxrender1 armhf 1:0.9.10-1 [29.9 kB] Get: 115 http://deb.debian.org/debian bullseye/main armhf x11-common all 1:7.7+22 [252 kB] Get: 116 http://deb.debian.org/debian bullseye/main armhf libxtst6 armhf 2:1.2.3-1 [26.3 kB] Get: 117 http://deb.debian.org/debian bullseye/main armhf openjdk-11-jre armhf 11.0.11+9-1 [151 kB] Get: 118 http://deb.debian.org/debian bullseye/main armhf default-jre armhf 2:1.11-72 [1044 B] Get: 119 http://deb.debian.org/debian bullseye/main armhf openjdk-11-jdk-headless armhf 11.0.11+9-1 [174 MB] Get: 120 http://deb.debian.org/debian bullseye/main armhf default-jdk-headless armhf 2:1.11-72 [1100 B] Get: 121 http://deb.debian.org/debian bullseye/main armhf openjdk-11-jdk armhf 11.0.11+9-1 [6937 kB] Get: 122 http://deb.debian.org/debian bullseye/main armhf default-jdk armhf 2:1.11-72 [1056 B] Get: 123 http://deb.debian.org/debian bullseye/main armhf libassuan0 armhf 2.5.3-7.1 [44.2 kB] Get: 124 http://deb.debian.org/debian bullseye/main armhf gpgconf armhf 2.2.27-2 [532 kB] Get: 125 http://deb.debian.org/debian bullseye/main armhf libksba8 armhf 1.5.0-3 [105 kB] Get: 126 http://deb.debian.org/debian bullseye/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2.1 [67.6 kB] Get: 127 http://deb.debian.org/debian bullseye/main armhf libsasl2-2 armhf 2.1.27+dfsg-2.1 [99.1 kB] Get: 128 http://deb.debian.org/debian bullseye/main armhf libldap-2.4-2 armhf 2.4.57+dfsg-3 [210 kB] Get: 129 http://deb.debian.org/debian bullseye/main armhf libnpth0 armhf 1.6-3 [17.8 kB] Get: 130 http://deb.debian.org/debian bullseye/main armhf dirmngr armhf 2.2.27-2 [722 kB] Get: 131 http://deb.debian.org/debian bullseye/main armhf gnupg-l10n all 2.2.27-2 [1084 kB] Get: 132 http://deb.debian.org/debian bullseye/main armhf gnupg-utils armhf 2.2.27-2 [835 kB] Get: 133 http://deb.debian.org/debian bullseye/main armhf gpg armhf 2.2.27-2 [868 kB] Get: 134 http://deb.debian.org/debian bullseye/main armhf pinentry-curses armhf 1.1.0-4 [60.6 kB] Get: 135 http://deb.debian.org/debian bullseye/main armhf gpg-agent armhf 2.2.27-2 [630 kB] Get: 136 http://deb.debian.org/debian bullseye/main armhf gpg-wks-client armhf 2.2.27-2 [509 kB] Get: 137 http://deb.debian.org/debian bullseye/main armhf gpg-wks-server armhf 2.2.27-2 [503 kB] Get: 138 http://deb.debian.org/debian bullseye/main armhf gpgsm armhf 2.2.27-2 [618 kB] Get: 139 http://deb.debian.org/debian bullseye/main armhf gnupg all 2.2.27-2 [825 kB] Get: 140 http://deb.debian.org/debian bullseye/main armhf libfile-dirlist-perl all 0.05-2 [7444 B] Get: 141 http://deb.debian.org/debian bullseye/main armhf libfile-which-perl all 1.23-1 [16.6 kB] Get: 142 http://deb.debian.org/debian bullseye/main armhf libfile-homedir-perl all 1.006-1 [43.8 kB] Get: 143 http://deb.debian.org/debian bullseye/main armhf libfile-touch-perl all 0.11-1 [9254 B] Get: 144 http://deb.debian.org/debian bullseye/main armhf libio-pty-perl armhf 1:1.15-2 [36.2 kB] Get: 145 http://deb.debian.org/debian bullseye/main armhf libipc-run-perl all 20200505.0-1 [102 kB] Get: 146 http://deb.debian.org/debian bullseye/main armhf libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get: 147 http://deb.debian.org/debian bullseye/main armhf libb-hooks-op-check-perl armhf 0.22-1+b3 [11.0 kB] Get: 148 http://deb.debian.org/debian bullseye/main armhf libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] Get: 149 http://deb.debian.org/debian bullseye/main armhf libdevel-callchecker-perl armhf 0.008-1+b2 [15.7 kB] Get: 150 http://deb.debian.org/debian bullseye/main armhf libparams-classify-perl armhf 0.015-1+b3 [24.5 kB] Get: 151 http://deb.debian.org/debian bullseye/main armhf libmodule-runtime-perl all 0.016-1 [19.4 kB] Get: 152 http://deb.debian.org/debian bullseye/main armhf libimport-into-perl all 1.002005-1 [11.6 kB] Get: 153 http://deb.debian.org/debian bullseye/main armhf librole-tiny-perl all 2.002004-1 [21.4 kB] Get: 154 http://deb.debian.org/debian bullseye/main armhf libstrictures-perl all 2.000006-1 [18.6 kB] Get: 155 http://deb.debian.org/debian bullseye/main armhf libsub-quote-perl all 2.006006-1 [21.0 kB] Get: 156 http://deb.debian.org/debian bullseye/main armhf libmoo-perl all 2.004004-1 [59.9 kB] Get: 157 http://deb.debian.org/debian bullseye/main armhf libencode-locale-perl all 1.05-1.1 [13.2 kB] Get: 158 http://deb.debian.org/debian bullseye/main armhf libtimedate-perl all 2.3300-2 [39.3 kB] Get: 159 http://deb.debian.org/debian bullseye/main armhf libhttp-date-perl all 6.05-1 [10.4 kB] Get: 160 http://deb.debian.org/debian bullseye/main armhf libfile-listing-perl all 6.14-1 [12.4 kB] Get: 161 http://deb.debian.org/debian bullseye/main armhf libhtml-tagset-perl all 3.20-4 [13.0 kB] Get: 162 http://deb.debian.org/debian bullseye/main armhf liburi-perl all 5.08-1 [90.6 kB] Get: 163 http://deb.debian.org/debian bullseye/main armhf libhtml-parser-perl armhf 3.75-1+b1 [102 kB] Get: 164 http://deb.debian.org/debian bullseye/main armhf libhtml-tree-perl all 5.07-2 [213 kB] Get: 165 http://deb.debian.org/debian bullseye/main armhf libio-html-perl all 1.004-2 [16.1 kB] Get: 166 http://deb.debian.org/debian bullseye/main armhf liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get: 167 http://deb.debian.org/debian bullseye/main armhf libhttp-message-perl all 6.28-1 [79.6 kB] Get: 168 http://deb.debian.org/debian bullseye/main armhf libhttp-cookies-perl all 6.10-1 [19.6 kB] Get: 169 http://deb.debian.org/debian bullseye/main armhf libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get: 170 http://deb.debian.org/debian bullseye/main armhf perl-openssl-defaults armhf 5 [7360 B] Get: 171 http://deb.debian.org/debian bullseye/main armhf libnet-ssleay-perl armhf 1.88-3+b1 [303 kB] Get: 172 http://deb.debian.org/debian bullseye/main armhf libio-socket-ssl-perl all 2.069-1 [215 kB] Get: 173 http://deb.debian.org/debian bullseye/main armhf libnet-http-perl all 6.20-1 [25.1 kB] Get: 174 http://deb.debian.org/debian bullseye/main armhf liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get: 175 http://deb.debian.org/debian bullseye/main armhf libtry-tiny-perl all 0.30-1 [23.3 kB] Get: 176 http://deb.debian.org/debian bullseye/main armhf libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 177 http://deb.debian.org/debian bullseye/main armhf libwww-perl all 6.52-1 [192 kB] Get: 178 http://deb.debian.org/debian bullseye/main armhf patchutils armhf 0.4.2-1 [72.5 kB] Get: 179 http://deb.debian.org/debian bullseye/main armhf wdiff armhf 1.2.2-2+b1 [121 kB] Get: 180 http://deb.debian.org/debian bullseye/main armhf devscripts armhf 2.21.3 [1092 kB] Get: 181 http://deb.debian.org/debian bullseye/main armhf python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 182 http://deb.debian.org/debian bullseye/main armhf python3-distutils all 3.9.2-1 [143 kB] Get: 183 http://deb.debian.org/debian bullseye/main armhf dh-python all 4.20201102+nmu1 [99.4 kB] Get: 184 http://deb.debian.org/debian bullseye/main armhf javahelper all 0.78 [97.2 kB] Get: 185 http://deb.debian.org/debian bullseye/main armhf markdown all 1.0.1-10.1 [17.5 kB] Get: 186 http://deb.debian.org/debian bullseye/main armhf maven-repo-helper all 1.10 [142 kB] Get: 187 http://deb.debian.org/debian bullseye/main armhf python3-all armhf 3.9.2-3 [1056 B] Fetched 288 MB in 28s (10.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-7_armhf.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../1-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_armhf.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:armhf. Preparing to unpack .../3-libpipeline1_1.5.3-1_armhf.deb ... Unpacking libpipeline1:armhf (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_armhf.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:armhf. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_armhf.deb ... Unpacking libpython3.9-minimal:armhf (3.9.2-1) ... Selecting previously unselected package libexpat1:armhf. Preparing to unpack .../6-libexpat1_2.2.10-2_armhf.deb ... Unpacking libexpat1:armhf (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_armhf.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:armhf (3.9.2-1) ... Setting up libexpat1:armhf (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... 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Setting up libio-pty-perl (1:1.15-2) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:armhf (2.66.8-1) ... No schema files found: doing nothing. Setting up libglvnd0:armhf (1.3.2-1) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:armhf (1.0.9-2+b2) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.30-1) ... Setting up libsensors-config (1:3.6.0-7) ... Setting up libmagic1:armhf (1:5.39-3) ... Setting up perl-openssl-defaults:armhf (5) ... Setting up gettext-base (0.21-4) ... Setting up libencode-locale-perl (1.05-1.1) ... Setting up libnpth0:armhf (1.6-3) ... Setting up file (1:5.39-3) ... Setting up libassuan0:armhf (2.5.3-7.1) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-2.1) ... Setting up libasound2-data (1.2.4-1.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libz3-4:armhf (4.8.10-1) ... Setting up libjpeg62-turbo:armhf (1:2.0.6-4) ... Setting up libx11-data (2:1.7.1-1) ... Setting up libnspr4:armhf (2:4.29-1) ... Setting up gnupg-l10n (2.2.27-2) ... Setting up libavahi-common-data:armhf (0.8-5) ... Setting up libdbus-1-3:armhf (1.12.20-2) ... Setting up libsigsegv2:armhf (2.13-1) ... Setting up libpng16-16:armhf (1.6.37-3) ... Setting up libio-html-perl (1.004-2) ... Setting up autopoint (0.21-4) ... Setting up libb-hooks-op-check-perl (0.22-1+b3) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up d-shlibs (0.98) ... Setting up libipc-run-perl (20200505.0-1) ... Setting up libpcsclite1:armhf (1.9.1-1) ... Setting up libsensors5:armhf (1:3.6.0-7) ... Setting up libglapi-mesa:armhf (20.3.4-1) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-2.1) ... Setting up libvulkan1:armhf (1.2.162.0-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libgif7:armhf (5.1.9-2) ... Setting up libmd0:armhf (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libxshmfence1:armhf (1.3-1) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libasound2:armhf (1.2.4-1.1) ... Setting up libmpdec3:armhf (2.5.1-1) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up netbase (6.3) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libfile-dirlist-perl (0.05-2) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up openssl (1.1.1k-1) ... Setting up libbsd0:armhf (0.11.3-1) ... Setting up libdrm-common (2.4.104-1) ... Setting up libelf1:armhf (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:armhf (2.9.10+dfsg-6.7) ... Setting up liburi-perl (5.08-1) ... Setting up libfile-touch-perl (0.11-1) ... Setting up dctrl-tools (2.24-3) ... Setting up markdown (1.0.1-10.1) ... Setting up libnet-ssleay-perl (1.88-3+b1) ... Setting up pinentry-curses (1.1.0-4) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up libhttp-date-perl (6.05-1) ... Setting up libxdmcp6:armhf (1:1.1.2-3) ... Setting up libxcb1:armhf (1.14-3) ... Setting up gettext (0.21-4) ... Setting up libxcb-xfixes0:armhf (1.14-3) ... Setting up libfile-listing-perl (6.14-1) ... Setting up libtool (2.4.6-15) ... Setting up libxcb-glx0:armhf (1.14-3) ... Setting up libedit2:armhf (3.1-20191231-2+b1) ... Setting up libreadline8:armhf (8.1-1) ... Setting up libavahi-common3:armhf (0.8-5) ... Setting up libldap-2.4-2:armhf (2.4.57+dfsg-3) ... Setting up libnet-http-perl (6.20-1) ... Setting up m4 (1.4.18-5) ... Setting up libnss3:armhf (2:3.61-1) ... Setting up libxcb-shm0:armhf (1.14-3) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxcb-present0:armhf (1.14-3) ... Setting up patchutils (0.4.2-1) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libllvm11:armhf (1:11.0.1-2) ... Setting up libfreetype6:armhf (2.10.4+dfsg-1) ... Setting up libxcb-sync1:armhf (1.14-3) ... Setting up ucf (3.0043) ... Setting up autoconf (2.69-14) ... Setting up libxcb-dri2-0:armhf (1.14-3) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libdrm2:armhf (2.4.104-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libhtml-parser-perl (3.75-1+b1) ... Setting up gpgconf (2.2.27-2) ... Setting up libx11-6:armhf (2:1.7.1-1) ... Setting up libharfbuzz0b:armhf (2.7.4-1) ... Setting up libavahi-client3:armhf (0.8-5) ... Setting up libio-socket-ssl-perl (2.069-1) ... Setting up gpg (2.2.27-2) ... Setting up libpython3.9-stdlib:armhf (3.9.2-1) ... Setting up libpython3-stdlib:armhf (3.9.2-3) ... Setting up gnupg-utils (2.2.27-2) ... Setting up libhttp-message-perl (6.28-1) ... Setting up libdrm-amdgpu1:armhf (2.4.104-1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:armhf (1.14-3) ... Setting up libx11-xcb1:armhf (2:1.7.1-1) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libdrm-nouveau2:armhf (2.4.104-1) ... Setting up libxdamage1:armhf (1:1.1.5-2) ... Setting up gpg-agent (2.2.27-2) ... Setting up libxrender1:armhf (1:0.9.10-1) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libdrm-radeon1:armhf (2.4.104-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up gpgsm (2.2.27-2) ... Setting up libgl1-mesa-dri:armhf (20.3.4-1) ... Setting up libxext6:armhf (2:1.3.3-1.1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxxf86vm1:armhf (1:1.1.4-1+b2) ... Setting up dh-autoreconf (20) ... Setting up dirmngr (2.2.27-2) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libxfixes3:armhf (1:5.0.3-2) ... Setting up gpg-wks-server (2.2.27-2) ... Setting up libcups2:armhf (2.3.3op2-3+deb11u1) ... Setting up libfontconfig1:armhf (2.13.1-4.2) ... Setting up python3.9 (3.9.2-1) ... Setting up libglx-mesa0:armhf (20.3.4-1) ... Setting up libxi6:armhf (2:1.7.10-1) ... Setting up gpg-wks-client (2.2.27-2) ... Setting up libglx0:armhf (1.3.2-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libxtst6:armhf (2:1.2.3-1) ... Setting up libmoo-perl (2.004004-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up libgl1:armhf (1.3.2-1) ... Setting up gnupg (2.2.27-2) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-all (3.9.2-3) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up default-jre-headless (2:1.11-72) ... Setting up libwww-perl (6.52-1) ... Setting up openjdk-11-jre-headless:armhf (11.0.11+9-1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up openjdk-11-jre:armhf (11.0.11+9-1) ... Setting up maven-repo-helper (1.10) ... Setting up openjdk-11-jdk-headless:armhf (11.0.11+9-1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre (2:1.11-72) ... Setting up default-jdk-headless (2:1.11-72) ... Setting up devscripts (2.21.3) ... Setting up openjdk-11-jdk:armhf (11.0.11+9-1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-armhf/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up javahelper (0.78) ... Setting up ca-certificates-java (20190909) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:emSign_Root_CA_-_G1.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:GTS_Root_R4.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:DST_Root_CA_X3.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:ACCVRAIZ1.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:Certigna_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:GTS_Root_R3.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:SecureTrust_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:EC-ACC.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:TrustCor_ECA-1.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:Izenpe.com.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:GTS_Root_R1.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:Secure_Global_CA.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:ISRG_Root_X1.pem Adding debian:Certigna.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:GTS_Root_R2.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:SecureSign_RootCA11.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Hongkong_Post_Root_CA_1.pem done. Setting up default-jdk (2:1.11-72) ... Processing triggers for libc-bin (2.31-12) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/ngs-sdk-2.10.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ngs-sdk_2.10.9-1_source.changes dpkg-buildpackage: info: source package ngs-sdk dpkg-buildpackage: info: source version 2.10.9-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --with python3,javahelper,jh_maven_repo_helper debian/rules override_dh_auto_clean make[1]: Entering directory '/build/ngs-sdk-2.10.9' if [ -e ngs-sdk/Makefile.config.linux.arm ] ; then \ # dh_auto_clean --sourcedirectory=ngs-sdk ; \ dh_auto_clean ; \ fi rm -rf ngs-java/arm-linux-gnueabihf rm -rf ngs-bam/arm-linux-gnueabihf rm -f ngs-bam/Makefile.config rm -f ngs-bam/Makefile.config.install.linux.x86_64.prl rm -f ngs-bam/Makefile.config.linux.x86_64 rm -f ngs-bam/reconfigure rm -rf ngs-sdk/ngs/unix/generic rm -rf ngs-sdk/arm-linux-gnueabihf rm -rf ngs-python/build make[1]: Leaving directory '/build/ngs-sdk-2.10.9' jh_clean mh_clean dh_clean debian/rules binary dh binary --with python3,javahelper,jh_maven_repo_helper dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/ngs-sdk-2.10.9' mkdir ngs-sdk/ngs/unix/generic && cp debian/atomic32.h ngs-sdk/ngs/unix/generic/ # # that's no standard configure script lacking support of default options \ ./configure --build=arm-linux-gnueabihf --prefix=/usr -- --source=1.7 CONFIGURING ngs-sdk Configuring NGS-SDK package checking system type... Linux checking OS distributor... checking machine architecture... aarch64 configure: warning: possibly unsupported architecture aarch64 on 'Linux' checking for supported architecture... aarch64 (32 bits) is supported checking for supported OS... Linux (linux) is supported checking for supported tool chain... gcc tool chain is supported checking for g++... yes checking for Python 3... /usr/bin/python3 checking whether gcc accepts -Wno-array-bounds... yes checking whether g++ accepts -static-libstdc++... no configure: creating 'ld.linux.exe_cmd.sh' configure: creating 'Makefile.config.linux.aarch64' configure: creating 'Makefile.config' configure: creating 'reconfigure' build type: release build prefix: /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk build output path: /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel includedir: /usr/include bindir: /usr/bin libdir: /usr/lib sharedir: /usr/share CC = gcc -c CPP = g++ configured with: "'--build=arm-linux-gnueabihf' '--prefix=/usr' '--' '--source=1.7'" CONFIGURING ngs-java Configuring NGS-JAVA package checking system type... Linux checking OS distributor... checking machine architecture... aarch64 configure: warning: possibly unsupported architecture aarch64 on 'Linux' checking for supported architecture... aarch64 (32 bits) is supported checking for supported OS... Linux (linux) is supported checking for supported tool chain... jdk tool chain is supported checking for javac... yes checking for Python 3... /usr/bin/python3 configure: creating 'Makefile.config.linux.aarch64' configure: creating 'Makefile.config' configure: creating 'reconfigure' build type: release build prefix: /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java build output path: /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java includedir: /usr/include bindir: /usr/bin libdir: /usr/lib sharedir: /usr/share javadir: /usr/jar configured with: "'--build=arm-linux-gnueabihf' '--prefix=/usr' '--' '--source=1.7'" CONFIGURING ngs-python Configuring NGS-PYTHON package checking system type... Linux checking OS distributor... checking machine architecture... aarch64 configure: warning: possibly unsupported architecture aarch64 on 'Linux' checking for supported architecture... aarch64 (32 bits) is supported checking for supported OS... Linux (linux) is supported checking for supported tool chain... gcc tool chain is supported checking for g++... yes checking for Python 3... /usr/bin/python3 checking whether gcc accepts -Wno-array-bounds... yes checking whether g++ accepts -static-libstdc++... no checking for ngs-sdk package... configure: optional ngs-sdk package not found: skipped. checking for ncbi-vdb package... configure: optional ncbi-vdb package not found: skipped. configure: creating 'ld.linux.exe_cmd.sh' configure: creating 'Makefile.config.linux.aarch64' configure: creating 'Makefile.config' configure: creating 'reconfigure' build type: release build prefix: /build/ngs-sdk-2.10.9/ngs-python/arm-linux-gnueabihf/ngs-python build output path: /build/ngs-sdk-2.10.9/ngs-python/arm-linux-gnueabihf/ngs-python/linux/gcc/aarch64/rel includedir: /usr/include bindir: /usr/bin libdir: /usr/lib sharedir: /usr/share pythondir: /usr CC = gcc -c CPP = g++ configured with: "'--build=arm-linux-gnueabihf' '--prefix=/usr' '--' '--source=1.7'" make[1]: Leaving directory '/build/ngs-sdk-2.10.9' jh_linkjars debian/rules override_dh_auto_build make[1]: Entering directory '/build/ngs-sdk-2.10.9' #dh_auto_build --sourcedirectory=ngs-sdk echo "DEBPKGNAME: EBPKGNAME" DEBPKGNAME: EBPKGNAME dh_auto_build --sourcedirectory=ngs-sdk cd ngs-sdk && make -j3 make[2]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk' make[3]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/dispatch' make[3]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/adapter' make[3]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/language' make[4]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/c++' mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++ g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReadCollection.pic.o ReadCollection.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReferenceSequence.pic.o ReferenceSequence.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReferenceIterator.pic.o ReferenceIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Reference.pic.o Reference.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/PileupIterator.pic.o PileupIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Pileup.pic.o Pileup.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/PileupEventIterator.pic.o PileupEventIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/PileupEvent.pic.o PileupEvent.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/AlignmentItf.pic.o AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/AlignmentIterator.pic.o AlignmentIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Alignment.pic.o Alignment.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReadGroupIterator.pic.o ReadGroupIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReadGroup.pic.o ReadGroup.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD ar rc /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-adapt-c++.a.2.10.9 /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReadCollectionItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/PileupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/PileupEventItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReferenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReferenceSequenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/AlignmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReadGroupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReadItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/FragmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/StatisticsItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/StringItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/Refcount.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ErrorMsg.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ErrBlock.pic.o rm -f /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-adapt-c++.a.2 ln -s libngs-adapt-c++.a.2.10.9 /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-adapt-c++.a.2 rm -f /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-adapt-c++.a ln -s libngs-adapt-c++.a.2 /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-adapt-c++.a rm -f /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-adapt-c++-static.a ln -s libngs-adapt-c++.a /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-adapt-c++-static.a make[3]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/adapter' g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReadIterator.pic.o ReadIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Read.pic.o Read.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/FragmentIterator.pic.o FragmentIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Fragment.pic.o Fragment.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Statistics.pic.o Statistics.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/StringRef.pic.o StringRef.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/PackageItf.pic.o PackageItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD make[4]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/java' mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadCollectionItf.pic.o jni_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD ar rc /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-c++.a /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReadCollection.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReferenceSequence.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReferenceIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Reference.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/PileupIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Pileup.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/PileupEventIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/PileupEvent.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/AlignmentIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Alignment.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReadGroupIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReadGroup.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReadIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Read.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/FragmentIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Fragment.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Statistics.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/StringRef.pic.o make[4]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/c++' make[4]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/python' mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_AlignmentItf.pic.o py_AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/VTable.pic.o VTable.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReferenceIteratorItf.pic.o jni_ReferenceIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_AlignmentIteratorItf.pic.o py_AlignmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReferenceItf.pic.o jni_ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_FragmentItf.pic.o py_FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD ar rc /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-disp.a /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReadCollectionItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReferenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReferenceSequenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/PileupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/PileupEventItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/AlignmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReadGroupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReadItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/FragmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/StatisticsItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/PackageItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/StringItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/Refcount.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/VTable.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ErrBlock.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ErrorMsg.pic.o make[3]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/dispatch' g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReferenceSequenceItf.pic.o jni_ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_FragmentIteratorItf.pic.o py_FragmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_PileupIteratorItf.pic.o jni_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_PileupItf.pic.o jni_PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PackageItf.pic.o py_PackageItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_PileupEventIteratorItf.pic.o jni_PileupEventIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PileupEventItf.pic.o py_PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PileupEventIteratorItf.pic.o py_PileupEventIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_PileupEventItf.pic.o jni_PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PileupItf.pic.o py_PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PileupIteratorItf.pic.o py_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_AlignmentIteratorItf.pic.o jni_AlignmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReadCollectionItf.pic.o py_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReadGroupItf.pic.o py_ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_AlignmentItf.pic.o jni_AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o py_ReadGroupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReadItf.pic.o py_ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReadIteratorItf.pic.o py_ReadIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReferenceItf.pic.o py_ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReferenceIteratorItf.pic.o py_ReferenceIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadGroupIteratorItf.pic.o jni_ReadGroupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReferenceSequenceItf.pic.o py_ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadGroupItf.pic.o jni_ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_StatisticsItf.pic.o py_StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_Refcount.pic.o py_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadIteratorItf.pic.o jni_ReadIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_StringItf.pic.o py_StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadItf.pic.o jni_ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_FragmentItf.pic.o jni_FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD ar rc /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-python.a /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_AlignmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_AlignmentIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_FragmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_FragmentIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PackageItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PileupEventItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PileupEventIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PileupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PileupIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReadCollectionItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReadGroupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReadItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReadIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReferenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReferenceIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReferenceSequenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_StatisticsItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_Refcount.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_StringItf.pic.o make[4]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/python' g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_StatisticsItf.pic.o jni_StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_Package.pic.o jni_Package.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_String.pic.o jni_String.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_Refcount.pic.o jni_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ErrorMsg.pic.o jni_ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD ar rc /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-java.a /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadCollectionItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReferenceIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReferenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReferenceSequenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_PileupIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_PileupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_PileupEventIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_PileupEventItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_AlignmentIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_AlignmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadGroupIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadGroupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_FragmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_StatisticsItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_Package.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_String.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_Refcount.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ErrorMsg.pic.o make[4]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/java' make[3]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/language' make[3]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk' rm -rf /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-c++ rm -rf /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-disp mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-c++ mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-disp rm -rf /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-java ( cd /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-c++; ar x /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-c++.a; ar t /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-c++.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.10.9\/ngs-sdk\/arm-linux-gnueabihf\/ngs-sdk\/linux\/gcc\/aarch64\/rel\/obj\/ngs-bind-c++\/\1/' > /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-c++/manifest ) ( cd /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-disp; ar x /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-disp.a; ar t /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-disp.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.10.9\/ngs-sdk\/arm-linux-gnueabihf\/ngs-sdk\/linux\/gcc\/aarch64\/rel\/obj\/ngs-disp\/\1/' > /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-disp/manifest ) mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-java ( cd /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-java; ar x /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-java.a; ar t /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-java.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.10.9\/ngs-sdk\/arm-linux-gnueabihf\/ngs-sdk\/linux\/gcc\/aarch64\/rel\/obj\/ngs-bind-java\/\1/' > /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-java/manifest ) rm -rf /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-python mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-python ( cd /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-python; ar x /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-python.a; ar t /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-python.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.10.9\/ngs-sdk\/arm-linux-gnueabihf\/ngs-sdk\/linux\/gcc\/aarch64\/rel\/obj\/ngs-bind-python\/\1/' > /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-python/manifest ) ( ar rc /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-c++.a.2.10.9 `cat /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-c++/manifest /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-disp/manifest` ) g++ -DNDEBUG -O3 -shared -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-sdk.so.2.10.9 -Wl,-soname=libngs-sdk.so.2 `cat /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-java/manifest /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-python/manifest` -L/build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib -lngs-disp rm -f /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-c++.a.2 ln -s libngs-c++.a.2.10.9 /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-c++.a.2 rm -f /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-c++.a ln -s libngs-c++.a.2 /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-c++.a rm -f /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-c++-static.a ln -s libngs-c++.a /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-c++-static.a rm -f /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-sdk.so.2 ln -s libngs-sdk.so.2.10.9 /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-sdk.so.2 rm -f /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-sdk.so ln -s libngs-sdk.so.2 /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-sdk.so make[3]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk' make[2]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk' # Remove ngs-bam generation, expects ngs-sdk and cannot find a way # to specify it #cd ngs-bam && LD_LIBRARY_PATH=../ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/*/rel/lib ./configure --build=arm-linux-gnueabihf --prefix=/usr --with-ngs-sdk-prefix=../ngs-sdk #dh_auto_build --sourcedirectory=ngs-bam dh_auto_build --sourcedirectory=ngs-java -- JAVAC="javac -source 1.7 -target 1.7" cd ngs-java && make -j3 "JAVAC=javac -source 1.7 -target 1.7" make[2]: Entering directory '/build/ngs-sdk-2.10.9/ngs-java' make[3]: Entering directory '/build/ngs-sdk-2.10.9/ngs-java' mkdir -p /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/jar mkdir -p /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/cls javac -source 1.7 -target 1.7 /build/ngs-sdk-2.10.9/ngs-java//ngs/ErrorMsg.java /build/ngs-sdk-2.10.9/ngs-java//ngs/Statistics.java /build/ngs-sdk-2.10.9/ngs-java//ngs/Fragment.java /build/ngs-sdk-2.10.9/ngs-java//ngs/FragmentIterator.java /build/ngs-sdk-2.10.9/ngs-java//ngs/Read.java /build/ngs-sdk-2.10.9/ngs-java//ngs/ReadIterator.java /build/ngs-sdk-2.10.9/ngs-java//ngs/ReadGroup.java /build/ngs-sdk-2.10.9/ngs-java//ngs/ReadGroupIterator.java /build/ngs-sdk-2.10.9/ngs-java//ngs/Alignment.java /build/ngs-sdk-2.10.9/ngs-java//ngs/AlignmentIterator.java /build/ngs-sdk-2.10.9/ngs-java//ngs/PileupEvent.java /build/ngs-sdk-2.10.9/ngs-java//ngs/PileupEventIterator.java /build/ngs-sdk-2.10.9/ngs-java//ngs/Pileup.java /build/ngs-sdk-2.10.9/ngs-java//ngs/PileupIterator.java /build/ngs-sdk-2.10.9/ngs-java//ngs/Reference.java /build/ngs-sdk-2.10.9/ngs-java//ngs/ReferenceIterator.java /build/ngs-sdk-2.10.9/ngs-java//ngs/ReadCollection.java /build/ngs-sdk-2.10.9/ngs-java//ngs/Package.java -d /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/cls -classpath /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/cls -sourcepath /build/ngs-sdk-2.10.9/ngs-java/:/build/ngs-sdk-2.10.9/ngs-java//itf:/build/ngs-sdk-2.10.9/ngs-java/gov/nih/nlm/ncbi/ngs && touch /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/cls/ngs-java-api ( cd /build/ngs-sdk-2.10.9/ngs-java/; jar cf /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/jar/ngs-src.jar `find gov ngs -name "*.java"`; chmod -x,o-w,g+w /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/jar/ngs-src.jar ) || ( rm -f /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/jar/ngs-src.jar && false ) Generating javadocs... javac -source 1.7 -target 1.7 /build/ngs-sdk-2.10.9/ngs-java/examples/examples/AlignTest.java /build/ngs-sdk-2.10.9/ngs-java/examples/examples/AlignSliceTest.java /build/ngs-sdk-2.10.9/ngs-java/examples/examples/FragTest.java /build/ngs-sdk-2.10.9/ngs-java/examples/examples/PileupTest.java /build/ngs-sdk-2.10.9/ngs-java/examples/examples/RefTest.java /build/ngs-sdk-2.10.9/ngs-java/examples/examples/ReadGroupTest.java -d /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/cls -classpath /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/cls -sourcepath /build/ngs-sdk-2.10.9/ngs-java/:/build/ngs-sdk-2.10.9/ngs-java//itf:/build/ngs-sdk-2.10.9/ngs-java/gov/nih/nlm/ncbi/ngs && touch /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/cls/ngs-examples warning: [options] bootstrap class path not set in conjunction with -source 7 warning: [options] bootstrap class path not set in conjunction with -source 7 1 warning javac -source 1.7 -target 1.7 /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/Refcount.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/StatisticsItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/FragmentItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/FragmentIteratorItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/ReadItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/ReadIteratorItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/ReadGroupItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/ReadGroupIteratorItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/AlignmentItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/AlignmentIteratorItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/PileupEventItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/PileupEventIteratorItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/PileupItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/PileupIteratorItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/ReferenceItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/ReferenceIteratorItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/ReadCollectionItf.java -d /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/cls -classpath /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/cls -sourcepath /build/ngs-sdk-2.10.9/ngs-java/:/build/ngs-sdk-2.10.9/ngs-java//itf:/build/ngs-sdk-2.10.9/ngs-java/gov/nih/nlm/ncbi/ngs && touch /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/cls/ngs-java-itf warning: [options] bootstrap class path not set in conjunction with -source 7 Creating destination directory: "/build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/jar/javadoc/" Note: /build/ngs-sdk-2.10.9/ngs-java/ngs/itf/Refcount.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. 1 warning javac -source 1.7 -target 1.7 /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/DownloadManager.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/FileCreator.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/HttpManager.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/LibDependencies.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/LibManager.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/LibPathIterator.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/LibVersionChecker.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/LMProperties.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/Logger.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/Manager.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/NGS.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/Version.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/LibraryLoadError.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/LibraryNotFoundError.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/LibraryIncompatibleVersionError.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/ConnectionProblemCause.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/DownloadDisabledCause.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/InvalidLibraryCause.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/JvmErrorCause.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/LibraryLoadCause.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/OutdatedJarCause.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/PrereleaseReqLibCause.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/UnsupportedArchCause.java -d /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/cls -classpath /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/cls -sourcepath /build/ngs-sdk-2.10.9/ngs-java/:/build/ngs-sdk-2.10.9/ngs-java//itf:/build/ngs-sdk-2.10.9/ngs-java/gov/nih/nlm/ncbi/ngs && touch /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/cls/ngs-java-ncbi Note: /build/ngs-sdk-2.10.9/ngs-java/ngs/itf/Refcount.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. 1 warning ( cd /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/cls; jar cf /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/jar/ngs-examples.jar `find examples -name "*.class"`; chmod -x,o-w,g+w /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/jar/ngs-examples.jar ) || ( rm -f /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/jar/ngs-examples.jar && false ) warning: [options] bootstrap class path not set in conjunction with -source 7 ( cd /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/jar/javadoc ; jar cf /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/jar/ngs-doc.jar `find . -type f`; chmod -x,o-w,g+w /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/jar/ngs-doc.jar ) || ( rm -f /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/jar/ngs-doc.jar && false ) 1 warning ( cd /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/cls; jar cf /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/jar/ngs-java.jar `find . -name "*.class"`; chmod -x,o-w,g+w /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/jar/ngs-java.jar ) || ( rm -f /build/ngs-sdk-2.10.9/ngs-java/arm-linux-gnueabihf/ngs-java/jar/ngs-java.jar && false ) make[3]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-java' make[2]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-java' markdown README.md > README.html make[1]: Leaving directory '/build/ngs-sdk-2.10.9' debian/rules override_dh_auto_test make[1]: Entering directory '/build/ngs-sdk-2.10.9' make -C ngs-sdk/test make[2]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/test' make[3]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/test/test_engine' mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/test/test_engine g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/test/test_engine/test_engine.pic.o test_engine.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/test/test_engine -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -DNDEBUG -O3 --shared -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libtest_engine.so /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/test/test_engine/test_engine.pic.o -L/build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib -L/build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib -lngs-adapt-c++ -lngs-bind-c++ -lngs-disp make[3]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/test/test_engine' make[3]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/test/ngs-test' mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/bin mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/test/ngs-test g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/test/ngs-test/main.o main.cpp -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/test/ngs-test -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -DNDEBUG -O3 -o /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/bin/test-ngs /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/obj/test/ngs-test/main.o -L/build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib -L/build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/ilib -ltest_engine -lngs-bind-c++ -lngs-disp make[3]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/test/ngs-test' make[2]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/test' # Tests of Java binding disabled because need external lib ncbi-vdb, # not available in Debian at this time #CLASSPATH=../arm-linux-gnueabihf/ngs-java/jar/ngs-java.jar LD_LIBRARY_PATH=ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/*/rel/lib: make -C ngs-java/examples #CLASSPATH=../arm-linux-gnueabihf/ngs-java/jar/ngs-java.jar LD_LIBRARY_PATH=../../ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/*/rel/lib: make -C ngs-java/examples run_all make[1]: Leaving directory '/build/ngs-sdk-2.10.9' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/ngs-sdk-2.10.9' d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-a \ --exclude-la \ --movedev "ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/*/rel/lib/*.a*" usr/lib/arm-linux-gnueabihf \ --movedev "ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/*/rel/ilib/*.a" usr/lib/arm-linux-gnueabihf \ --movedev ngs-sdk/ngs usr/include \ ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/*/rel/lib/libngs-sdk.so Library package automatic movement utility set -e install -d -m 755 debian/libngs-sdk-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libngs-sdk2/usr/lib/arm-linux-gnueabihf mv ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-sdk.so debian/libngs-sdk-dev/usr/lib/arm-linux-gnueabihf mv /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-sdk.so.2 debian/libngs-sdk2/usr/lib/arm-linux-gnueabihf mv /build/ngs-sdk-2.10.9/ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-sdk.so.2.10.9 debian/libngs-sdk2/usr/lib/arm-linux-gnueabihf PKGDEV=libngs-sdk-dev PKGSHL=libngs-sdk2 install -d -m 755 debian/libngs-sdk-dev/usr/lib/arm-linux-gnueabihf mv ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/*/rel/lib/*.a* debian/libngs-sdk-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libngs-sdk-dev/usr/lib/arm-linux-gnueabihf mv ngs-sdk/arm-linux-gnueabihf/ngs-sdk/linux/gcc/*/rel/ilib/*.a debian/libngs-sdk-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libngs-sdk-dev/usr/include mv ngs-sdk/ngs debian/libngs-sdk-dev/usr/include make[1]: Leaving directory '/build/ngs-sdk-2.10.9' debian/rules override_dh_install make[1]: Entering directory '/build/ngs-sdk-2.10.9' dh_install -ppython3-ngs set -e && for i in 3.9; do \ cd ngs-python ; \ python$i ./setup.py install --install-layout=deb --root ../debian/python3-ngs; \ cd .. ; \ done /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'include_package_data' warnings.warn(msg) running install running build running build_py creating build creating build/lib creating build/lib/ngs copying ngs/String.py -> build/lib/ngs copying ngs/ReadGroupIterator.py -> build/lib/ngs copying ngs/Pileup.py -> build/lib/ngs copying ngs/FragmentIterator.py -> build/lib/ngs copying ngs/Package.py -> build/lib/ngs copying ngs/LibManager.py -> build/lib/ngs copying ngs/ReferenceSequence.py -> build/lib/ngs copying ngs/ReadGroup.py -> build/lib/ngs copying ngs/AlignmentIterator.py -> build/lib/ngs copying ngs/Reference.py -> build/lib/ngs copying ngs/__init__.py -> build/lib/ngs copying ngs/LibChecker.py -> build/lib/ngs copying ngs/Alignment.py -> build/lib/ngs copying ngs/ReadIterator.py -> build/lib/ngs copying ngs/ReadCollection.py -> build/lib/ngs copying ngs/Read.py -> build/lib/ngs copying ngs/ReferenceIterator.py -> build/lib/ngs copying ngs/Fragment.py -> build/lib/ngs copying ngs/ErrorMsg.py -> build/lib/ngs copying ngs/Refcount.py -> build/lib/ngs copying ngs/PileupIterator.py -> build/lib/ngs copying ngs/Statistics.py -> build/lib/ngs copying ngs/PileupEvent.py -> build/lib/ngs copying ngs/PileupEventIterator.py -> build/lib/ngs running install_lib creating ../debian/python3-ngs creating ../debian/python3-ngs/usr creating ../debian/python3-ngs/usr/lib creating ../debian/python3-ngs/usr/lib/python3 creating ../debian/python3-ngs/usr/lib/python3/dist-packages creating ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/String.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/ReadGroupIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Pileup.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/FragmentIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Package.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/LibManager.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/ReferenceSequence.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/ReadGroup.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/AlignmentIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Reference.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/__init__.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/LibChecker.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Alignment.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/ReadIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/ReadCollection.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Read.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/ReferenceIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Fragment.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/ErrorMsg.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Refcount.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/PileupIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Statistics.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/PileupEvent.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/PileupEventIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/String.py to String.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadGroupIterator.py to ReadGroupIterator.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Pileup.py to Pileup.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/FragmentIterator.py to FragmentIterator.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Package.py to Package.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/LibManager.py to LibManager.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReferenceSequence.py to ReferenceSequence.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadGroup.py to ReadGroup.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/AlignmentIterator.py to AlignmentIterator.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Reference.py to Reference.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/__init__.py to __init__.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/LibChecker.py to LibChecker.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Alignment.py to Alignment.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadIterator.py to ReadIterator.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadCollection.py to ReadCollection.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Read.py to Read.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReferenceIterator.py to ReferenceIterator.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Fragment.py to Fragment.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ErrorMsg.py to ErrorMsg.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Refcount.py to Refcount.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/PileupIterator.py to PileupIterator.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Statistics.py to Statistics.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/PileupEvent.py to PileupEvent.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/PileupEventIterator.py to PileupEventIterator.cpython-39.pyc running install_egg_info Writing ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs-1.0.egg-info find debian -name "*.pyc" -delete find debian -type d -name __pycache__ | xargs rm -rf make[1]: Leaving directory '/build/ngs-sdk-2.10.9' jh_installjavadoc dh_installdocs dh_installchangelogs dh_python3 dh_perl dh_link jh_installlibs jh_classpath jh_manifest jh_depends mh_installpoms mh_linkjars --skip-clean-poms dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dwz: debian/libngs-sdk2/usr/lib/arm-linux-gnueabihf/libngs-sdk.so.2.10.9: .debug_info section not present dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libngs-sdk2/usr/lib/arm-linux-gnueabihf/libngs-sdk.so.2.10.9 found in none of the libraries dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libngs-sdk2' in '../libngs-sdk2_2.10.9-1_armhf.deb'. dpkg-deb: building package 'libngs-sdk-dev' in '../libngs-sdk-dev_2.10.9-1_armhf.deb'. dpkg-deb: building package 'python3-ngs' in '../python3-ngs_2.10.9-1_armhf.deb'. dpkg-deb: building package 'libngs-sdk2-dbgsym' in '../libngs-sdk2-dbgsym_2.10.9-1_armhf.deb'. dpkg-deb: building package 'libngs-java' in '../libngs-java_2.10.9-1_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../ngs-sdk_2.10.9-1_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/5573 and its subdirectories I: Current time: Sun Jul 18 14:16:23 -12 2021 I: pbuilder-time-stamp: 1626660983 Mon Jul 19 02:16:38 UTC 2021 I: 1st build successful. Starting 2nd build on remote node cbxi4pro0-armhf-rb.debian.net. Mon Jul 19 02:16:38 UTC 2021 I: Preparing to do remote build '2' on cbxi4pro0-armhf-rb.debian.net. Mon Jul 19 02:25:56 UTC 2021 I: Deleting $TMPDIR on cbxi4pro0-armhf-rb.debian.net. Mon Jul 19 02:25:58 UTC 2021 I: ngs-sdk_2.10.9-1_armhf.changes: Format: 1.8 Date: Sun, 17 Jan 2021 18:52:56 +0100 Source: ngs-sdk Binary: libngs-java libngs-sdk-dev libngs-sdk2 libngs-sdk2-dbgsym python3-ngs Architecture: armhf Version: 2.10.9-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libngs-java - Next Generation Sequencing language Bindings (Java bindings) libngs-sdk-dev - Next Generation Sequencing language Bindings (development) libngs-sdk2 - Next Generation Sequencing language Bindings python3-ngs - Next Generation Sequencing language Bindings (Python3 bindings) Changes: ngs-sdk (2.10.9-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * watch file standard 4 (routine-update) Checksums-Sha1: 29e35ae948f94cfdc1ef0a990c938df8b6720a57 80356 libngs-java_2.10.9-1_armhf.deb bda1ac4614a265cb1f1ee90db34e3143331fd060 89960 libngs-sdk-dev_2.10.9-1_armhf.deb 3d0196f0e9784c54c64c2e15e2e2aa89c6f822c4 10600 libngs-sdk2-dbgsym_2.10.9-1_armhf.deb d9fa1adaa1a13877f035d49b0c3ded8e096f77fa 46072 libngs-sdk2_2.10.9-1_armhf.deb c77db0bb78868593992698e71b8956c44587228e 10733 ngs-sdk_2.10.9-1_armhf.buildinfo 13c0cad3d0635c1a9d78d420e1ae30a905d83311 19916 python3-ngs_2.10.9-1_armhf.deb Checksums-Sha256: abf66a108d71516ab3c9188e85bb04d7a5c5b52bb945fd7cbfc7f648a543d7d9 80356 libngs-java_2.10.9-1_armhf.deb a87aef4356d3f3a2630d9071fd682cc0d08e18e731330691dd4dab978817f363 89960 libngs-sdk-dev_2.10.9-1_armhf.deb 70377087dc7b17adce9f139d8a456e1e989edf86404afc26cebec852347fd62b 10600 libngs-sdk2-dbgsym_2.10.9-1_armhf.deb 6ee8ac01dbec6245653208c0190c99627e2b9345a88a5d43e06c9629f0d9c348 46072 libngs-sdk2_2.10.9-1_armhf.deb ee7b532183c3df7f79cd802011ec5f79f38ae3829981cdec4c6afea8b651a826 10733 ngs-sdk_2.10.9-1_armhf.buildinfo 45c1b86553cf23b6892b1c40e58447ba632d9e1bcf462faeda439b36f93c6f2b 19916 python3-ngs_2.10.9-1_armhf.deb Files: b5d44f92bc72ac43a0bb4ebad653a05d 80356 java optional libngs-java_2.10.9-1_armhf.deb 153ebe902f7e3561e212b1f640a5f399 89960 libdevel optional libngs-sdk-dev_2.10.9-1_armhf.deb 18ee40d91f62c63aea806d19a8a4c257 10600 debug optional libngs-sdk2-dbgsym_2.10.9-1_armhf.deb e7ae386cf476378fb04c88c95bdd5793 46072 libs optional libngs-sdk2_2.10.9-1_armhf.deb 5c62700de16dfe50c44a1df5a6a7f422 10733 science optional ngs-sdk_2.10.9-1_armhf.buildinfo 67e7b67cca3e40995ba1522ce2fe8882 19916 python optional python3-ngs_2.10.9-1_armhf.deb Mon Jul 19 02:26:00 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.2ifjnnkNhs/ngs-sdk_2.10.9-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.2ifjnnkNhs/ngs-sdk_2.10.9-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.2ifjnnkNhs/ngs-sdk_2.10.9-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.2ifjnnkNhs/b1/ngs-sdk_2.10.9-1_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.2ifjnnkNhs/b2/ngs-sdk_2.10.9-1_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.289s) 0.289s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.032s) 0.032s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Mon Jul 19 02:28:02 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Mon Jul 19 02:28:02 UTC 2021 I: ngs-sdk from bullseye built successfully and reproducibly on armhf. Mon Jul 19 02:28:04 UTC 2021 I: Submitting .buildinfo files to external archives: Mon Jul 19 02:28:04 UTC 2021 I: Submitting 12K b1/ngs-sdk_2.10.9-1_armhf.buildinfo.asc Mon Jul 19 02:28:04 UTC 2021 I: Submitting 12K b2/ngs-sdk_2.10.9-1_armhf.buildinfo.asc Mon Jul 19 02:28:05 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Jul 19 02:28:05 UTC 2021 I: Done submitting .buildinfo files. Mon Jul 19 02:28:05 UTC 2021 I: Removing signed ngs-sdk_2.10.9-1_armhf.buildinfo.asc files: removed './b1/ngs-sdk_2.10.9-1_armhf.buildinfo.asc' removed './b2/ngs-sdk_2.10.9-1_armhf.buildinfo.asc'