Sun Jul 11 10:17:30 UTC 2021 I: starting to build flexbar/bullseye/armhf on jenkins on '2021-07-11 10:17' Sun Jul 11 10:17:30 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_25/2069/console.log Sun Jul 11 10:17:30 UTC 2021 I: Downloading source for bullseye/flexbar=1:3.5.0-3 --2021-07-11 10:17:31-- http://cdn-fastly.deb.debian.org/debian/pool/main/f/flexbar/flexbar_3.5.0-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2042 (2.0K) Saving to: ‘flexbar_3.5.0-3.dsc’ 0K . 100% 165M=0s 2021-07-11 10:17:31 (165 MB/s) - ‘flexbar_3.5.0-3.dsc’ saved [2042/2042] Sun Jul 11 10:17:31 UTC 2021 I: flexbar_3.5.0-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: flexbar Binary: flexbar Architecture: any Version: 1:3.5.0-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Tony Travis Homepage: https://github.com/seqan/flexbar Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/flexbar Vcs-Git: https://salsa.debian.org/med-team/flexbar.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libtbb-dev, cmake, libseqan2-dev, zlib1g-dev, libbz2-dev Package-List: flexbar deb science optional arch=any Checksums-Sha1: 0c43550b73a08effdd3a7965e916dc9c6b64f8b2 44021 flexbar_3.5.0.orig.tar.gz 9c71f68fa83ba1c76e2fd88fe25ee3ce791a5d8e 6284 flexbar_3.5.0-3.debian.tar.xz Checksums-Sha256: 656168934b6cb367ee6d4adad0c40506bc107c888d129fe191c6f3f3446a4ac9 44021 flexbar_3.5.0.orig.tar.gz e74e9373ac76195dfc3bd264eaefafa64436f2d261bdc7609d2469ad3ebf9669 6284 flexbar_3.5.0-3.debian.tar.xz Files: 0e07bf4afebfd731c4718b401383224a 44021 flexbar_3.5.0.orig.tar.gz 512bb4953f7fe2206e3c5dfa9955ed04 6284 flexbar_3.5.0-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl/h8UAUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafGCcw//bV1OqgdTI2PxPV3J5xHcNK5TyMMo 06dmfOBlDF7pkwnUKo5LjmFBH7hYJooSYcod9IwIP/hRrdfEkScYiIlLA2rSWN1M mIukdNCS0GI1W3GVfs2z7CCXXCEc4J2Um/VEbpxCBowzzg3ZLkBJxbVQjeV+RTHX eYz2DsADkNDgoHkwj8ZCHfIVd8jox6LuKrTLIIw9YAxBAU4KQYxncRgT4muVsJii +4zI/hIcCguhDcrPHC2fcW7HMSxK0mlQNT3OYwjETKozFa7WKVJwW+RdiOk0Gg2E WgfTdVA2eJ6JNq9mmYAmkZ1K2pB+huiqyhgdydWNeJGxPztpSRVBARbKthDU3i4d 7KoSLW+H2sSH8qI1q2r2Rw738f1U8Ia+9H6aViIuk3dFyti2FlIgVjHgnXZKq9Bb 8T53JCrkhC/YwkwiCnPBsjHIoGT5PdWll9NoNi115xJsFm+ow6VCFNEebHDSdwP9 RxLCJbbaC8sguM511CZZkKGIjsulTZPclpyLhJxKkIHlZtDfHJtmvZmzt/G/t7lp hPd+zL8Xj17+SbtBuouaR/xKKeleNl5l8aGA7oXpAnEDsXVYccYj1OEl4mfX0ySo Gr99TmG4CYZ4kWRQl7n0bZy9WipmOx45HovsRkTcVxWWM4AY8Vfg+HmkqdR63X4j 9QMWNo/iqlk2oB8= =gv/a -----END PGP SIGNATURE----- Sun Jul 11 10:17:31 UTC 2021 I: Checking whether the package is not for us Sun Jul 11 10:17:31 UTC 2021 I: Starting 1st build on remote node virt32c-armhf-rb.debian.net. Sun Jul 11 10:17:31 UTC 2021 I: Preparing to do remote build '1' on virt32c-armhf-rb.debian.net. Sun Jul 11 10:21:21 UTC 2021 I: Deleting $TMPDIR on virt32c-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Jul 10 22:17:37 -12 2021 I: pbuilder-time-stamp: 1625998657 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [flexbar_3.5.0-3.dsc] I: copying [./flexbar_3.5.0.orig.tar.gz] I: copying [./flexbar_3.5.0-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.B3WiIiQN/trustedkeys.kbx': General error gpgv: Signature made Tue Dec 22 01:14:40 2020 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./flexbar_3.5.0-3.dsc dpkg-source: info: extracting flexbar in flexbar-3.5.0 dpkg-source: info: unpacking flexbar_3.5.0.orig.tar.gz dpkg-source: info: unpacking flexbar_3.5.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_march_native.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/22522/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='30fba3b59dc44b29b0916c954c953b8e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='22522' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.GB1vmR3stB/pbuilderrc_CIKk --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.GB1vmR3stB/b1 --logfile b1/build.log flexbar_3.5.0-3.dsc' SUDO_GID='113' SUDO_UID='107' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:8000/' I: uname -a Linux virt32c 5.10.0-7-armmp-lpae #1 SMP Debian 5.10.40-1 (2021-05-28) armv7l GNU/Linux I: ls -l /bin total 3580 -rwxr-xr-x 1 root root 816764 Jun 21 14:26 bash -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash -rwxr-xr-x 1 root root 75880 Sep 22 2020 date -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd -rwxr-xr-x 1 root root 59912 Sep 22 2020 df -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir -rwxr-xr-x 1 root root 55012 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 22496 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 47492 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln -rwxr-xr-x 1 root root 35068 Feb 7 2020 login -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls -rwxr-xr-x 1 root root 99940 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 34408 Feb 7 02:38 more -rwsr-xr-x 1 root root 34400 Feb 7 02:38 mount -rwxr-xr-x 1 root root 9824 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 9 21:24 sh -> dash -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty -rwsr-xr-x 1 root root 46704 Feb 7 02:38 su -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch -rwxr-xr-x 1 root root 22496 Sep 22 2020 true -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 22108 Feb 7 02:38 umount -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir -rwxr-xr-x 1 root root 38512 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/22522/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libtbb-dev, cmake, libseqan2-dev, zlib1g-dev, libbz2-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libtbb-dev; however: Package libtbb-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev; however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libbz2-dev{a} libcurl4{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libjsoncpp24{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps8{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtbb-dev{a} libtbb2{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 55 newly installed, 0 to remove and 0 not upgraded. Need to get 27.4 MB of archives. After unpacking 108 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-7 [138 kB] Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB] Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB] Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB] Get: 6 http://deb.debian.org/debian bullseye/main armhf libncurses6 armhf 6.2+20201114-2 [80.5 kB] Get: 7 http://deb.debian.org/debian bullseye/main armhf libprocps8 armhf 2:3.3.17-5 [60.7 kB] Get: 8 http://deb.debian.org/debian bullseye/main armhf procps armhf 2:3.3.17-5 [492 kB] Get: 9 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB] Get: 10 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB] Get: 11 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3 [117 kB] Get: 12 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3 [68.1 kB] Get: 13 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB] Get: 14 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB] Get: 15 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB] Get: 16 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB] Get: 17 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 18 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB] Get: 19 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB] Get: 20 http://deb.debian.org/debian bullseye/main armhf cmake-data all 3.18.4-2 [1725 kB] Get: 21 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB] Get: 22 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [602 kB] Get: 23 http://deb.debian.org/debian bullseye/main armhf libarchive13 armhf 3.4.3-2+b1 [304 kB] Get: 24 http://deb.debian.org/debian bullseye/main armhf libbrotli1 armhf 1.0.9-2+b2 [262 kB] Get: 25 http://deb.debian.org/debian bullseye/main armhf libsasl2-modules-db armhf 2.1.27+dfsg-2.1 [67.6 kB] Get: 26 http://deb.debian.org/debian bullseye/main armhf libsasl2-2 armhf 2.1.27+dfsg-2.1 [99.1 kB] Get: 27 http://deb.debian.org/debian bullseye/main armhf libldap-2.4-2 armhf 2.4.57+dfsg-3 [210 kB] Get: 28 http://deb.debian.org/debian bullseye/main armhf libnghttp2-14 armhf 1.43.0-1 [65.6 kB] Get: 29 http://deb.debian.org/debian bullseye/main armhf libpsl5 armhf 0.21.0-1.2 [56.1 kB] Get: 30 http://deb.debian.org/debian bullseye/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b2 [55.2 kB] Get: 31 http://deb.debian.org/debian bullseye/main armhf libssh2-1 armhf 1.9.0-2 [143 kB] Get: 32 http://deb.debian.org/debian bullseye/main armhf libcurl4 armhf 7.74.0-1.3+b1 [310 kB] Get: 33 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2 [76.3 kB] Get: 34 http://deb.debian.org/debian bullseye/main armhf libjsoncpp24 armhf 1.9.4-4 [68.5 kB] Get: 35 http://deb.debian.org/debian bullseye/main armhf librhash0 armhf 1.4.1-2 [144 kB] Get: 36 http://deb.debian.org/debian bullseye/main armhf libuv1 armhf 1.40.0-2 [120 kB] Get: 37 http://deb.debian.org/debian bullseye/main armhf cmake armhf 3.18.4-2 [3534 kB] Get: 38 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB] Get: 39 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB] Get: 40 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB] Get: 43 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 44 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 45 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB] Get: 46 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB] Get: 47 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB] Get: 48 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 49 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB] Get: 51 http://deb.debian.org/debian bullseye/main armhf libbz2-dev armhf 1.0.8-4 [29.2 kB] Get: 52 http://deb.debian.org/debian bullseye/main armhf libseqan2-dev all 2.4.0+dfsg-14 [1220 kB] Get: 53 http://deb.debian.org/debian bullseye/main armhf libtbb2 armhf 2020.3-1 [118 kB] Get: 54 http://deb.debian.org/debian bullseye/main armhf libtbb-dev armhf 2020.3-1 [313 kB] Get: 55 http://deb.debian.org/debian bullseye/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [185 kB] Fetched 27.4 MB in 3s (10.4 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_armhf.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:armhf. Preparing to unpack .../01-libuchardet0_0.0.7-1_armhf.deb ... Unpacking libuchardet0:armhf (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_armhf.deb ... 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Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:armhf (1.0.9-2+b2) ... Setting up libtbb2:armhf (2020.3-1) ... Setting up libnghttp2-14:armhf (1.43.0-1) ... Setting up libmagic1:armhf (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libseqan2-dev (2.4.0+dfsg-14) ... Setting up libsasl2-modules-db:armhf (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libuv1:armhf (1.40.0-2) ... Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:armhf (6.2+20201114-2) ... Setting up libsigsegv2:armhf (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libsasl2-2:armhf (2.1.27+dfsg-2.1) ... Setting up libjsoncpp24:armhf (1.9.4-4) ... Setting up zlib1g-dev:armhf (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up librhash0:armhf (1.4.1-2) ... Setting up libuchardet0:armhf (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:armhf (1.9.0-2) ... Setting up cmake-data (3.18.4-2) ... Setting up libtbb-dev:armhf (2020.3-1) ... Setting up libelf1:armhf (0.183-1) ... Setting up libxml2:armhf (2.9.10+dfsg-6.7) ... Setting up libprocps8:armhf (2:3.3.17-5) ... Setting up libbz2-dev:armhf (1.0.8-4) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:armhf (3.4.3-2+b1) ... Setting up libldap-2.4-2:armhf (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:armhf (7.74.0-1.3+b1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up cmake (3.18.4-2) ... Setting up debhelper (13.3.4) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/flexbar-3.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../flexbar_3.5.0-3_source.changes dpkg-buildpackage: info: source package flexbar dpkg-buildpackage: info: source version 1:3.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/flexbar-3.5.0' dh_auto_clean rm -f test/result_*fast[aq] test/result_*.log make[1]: Leaving directory '/build/flexbar-3.5.0' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-arm-linux-gnueabihf && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabihf .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Performing Test COMPILER_SUPPORTS_CXX14 -- Performing Test COMPILER_SUPPORTS_CXX14 - Success -- Flexbar 32 bit architecture -- Found ZLIB: /usr/lib/arm-linux-gnueabihf/libz.so (found version "1.2.11") -- Found BZip2: /usr/lib/arm-linux-gnueabihf/libbz2.so (found version "1.0.8") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/flexbar-3.5.0/obj-arm-linux-gnueabihf dh_auto_build cd obj-arm-linux-gnueabihf && make -j3 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/flexbar-3.5.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -S/build/flexbar-3.5.0 -B/build/flexbar-3.5.0/obj-arm-linux-gnueabihf --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/flexbar-3.5.0/obj-arm-linux-gnueabihf/CMakeFiles /build/flexbar-3.5.0/obj-arm-linux-gnueabihf//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/flexbar-3.5.0/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/flexbar.dir/build.make src/CMakeFiles/flexbar.dir/depend make[3]: Entering directory '/build/flexbar-3.5.0/obj-arm-linux-gnueabihf' cd /build/flexbar-3.5.0/obj-arm-linux-gnueabihf && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/flexbar-3.5.0 /build/flexbar-3.5.0/src /build/flexbar-3.5.0/obj-arm-linux-gnueabihf /build/flexbar-3.5.0/obj-arm-linux-gnueabihf/src /build/flexbar-3.5.0/obj-arm-linux-gnueabihf/src/CMakeFiles/flexbar.dir/DependInfo.cmake --color= Dependee "/build/flexbar-3.5.0/obj-arm-linux-gnueabihf/src/CMakeFiles/flexbar.dir/DependInfo.cmake" is newer than depender "/build/flexbar-3.5.0/obj-arm-linux-gnueabihf/src/CMakeFiles/flexbar.dir/depend.internal". Dependee "/build/flexbar-3.5.0/obj-arm-linux-gnueabihf/src/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/flexbar-3.5.0/obj-arm-linux-gnueabihf/src/CMakeFiles/flexbar.dir/depend.internal". Scanning dependencies of target flexbar make[3]: Leaving directory '/build/flexbar-3.5.0/obj-arm-linux-gnueabihf' make -f src/CMakeFiles/flexbar.dir/build.make src/CMakeFiles/flexbar.dir/build make[3]: Entering directory '/build/flexbar-3.5.0/obj-arm-linux-gnueabihf' [ 50%] Building CXX object src/CMakeFiles/flexbar.dir/Flexbar.cpp.o cd /build/flexbar-3.5.0/obj-arm-linux-gnueabihf/src && /usr/bin/c++ -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_ZLIB=1 -I/build/flexbar-3.5.0/include -g -O2 -fdebug-prefix-map=/build/flexbar-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -o CMakeFiles/flexbar.dir/Flexbar.cpp.o -c /build/flexbar-3.5.0/src/Flexbar.cpp In file included from /build/flexbar-3.5.0/src/Flexbar.h:16, from /build/flexbar-3.5.0/src/Flexbar.cpp:24: /usr/include/tbb/task_scheduler_init.h:21:154: note: '#pragma message: TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.' 21 | #pragma message("TBB Warning: tbb/task_scheduler_init.h is deprecated. For details, please see Deprecated Features appendix in the TBB reference manual.") | ^ In file included from /build/flexbar-3.5.0/src/Flexbar.cpp:24: /build/flexbar-3.5.0/src/Flexbar.h: In function 'void startProcessing(Options&)': /build/flexbar-3.5.0/src/Flexbar.h:243:16: warning: 'pipeline' is deprecated: tbb::pipeline is deprecated, use tbb::parallel_pipeline [-Wdeprecated-declarations] 243 | tbb::pipeline pipe; | ^~~~ In file included from /build/flexbar-3.5.0/src/Flexbar.h:15, from /build/flexbar-3.5.0/src/Flexbar.cpp:24: /usr/include/tbb/pipeline.h:235:87: note: declared here 235 | class __TBB_DEPRECATED_MSG("tbb::pipeline is deprecated, use tbb::parallel_pipeline") pipeline { | ^~~~~~~~ [100%] Linking CXX executable ../flexbar cd /build/flexbar-3.5.0/obj-arm-linux-gnueabihf/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/flexbar.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/flexbar-3.5.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/flexbar.dir/Flexbar.cpp.o -o ../flexbar -ltbb -lpthread -lz -lbz2 make[3]: Leaving directory '/build/flexbar-3.5.0/obj-arm-linux-gnueabihf' [100%] Built target flexbar make[2]: Leaving directory '/build/flexbar-3.5.0/obj-arm-linux-gnueabihf' /usr/bin/cmake -E cmake_progress_start /build/flexbar-3.5.0/obj-arm-linux-gnueabihf/CMakeFiles 0 make[1]: Leaving directory '/build/flexbar-3.5.0/obj-arm-linux-gnueabihf' debian/rules override_dh_auto_test make[1]: Entering directory '/build/flexbar-3.5.0' cd test ; \ export PATH="/build/flexbar-3.5.0/obj-arm-linux-gnueabihf:$PATH" ; \ echo $PATH ; \ export HOME=/tmp ; \ which flexbar ; \ ./flexbar_test.sh /build/flexbar-3.5.0/obj-arm-linux-gnueabihf:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games /build/flexbar-3.5.0/obj-arm-linux-gnueabihf/flexbar Testing fasta: Test 1 OK Test 2 OK Test 3 OK Test 4 OK Test 5 OK Testing fastq: Test 1 OK Test 2 OK Test 3 OK Test 4 OK Test 5 OK Testing decompression: Test gzip OK Test bzip2 OK rm -f test/result_*fast[aq] test/result_*.log make[1]: Leaving directory '/build/flexbar-3.5.0' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_lintian dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/flexbar/usr/bin/flexbar contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'flexbar-dbgsym' in '../flexbar-dbgsym_3.5.0-3_armhf.deb'. dpkg-deb: building package 'flexbar' in '../flexbar_3.5.0-3_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../flexbar_3.5.0-3_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/22522 and its subdirectories I: Current time: Sat Jul 10 22:21:11 -12 2021 I: pbuilder-time-stamp: 1625998871 Sun Jul 11 10:21:23 UTC 2021 I: 1st build successful. Starting 2nd build on remote node jtx1c-armhf-rb.debian.net. Sun Jul 11 10:21:23 UTC 2021 I: Preparing to do remote build '2' on jtx1c-armhf-rb.debian.net. Sun Jul 11 10:26:44 UTC 2021 I: Deleting $TMPDIR on jtx1c-armhf-rb.debian.net. Sun Jul 11 10:26:46 UTC 2021 I: flexbar_3.5.0-3_armhf.changes: Format: 1.8 Date: Tue, 22 Dec 2020 09:30:50 +0530 Source: flexbar Binary: flexbar flexbar-dbgsym Architecture: armhf Version: 1:3.5.0-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: flexbar - flexible barcode and adapter removal for sequencing platforms Changes: flexbar (1:3.5.0-3) unstable; urgency=medium . * Team Upload. [ Steffen Möller ] * Added ref to conda . [ Nilesh Patra ] * Clean up after build-time tests (Fixes un-reproducible build) * Really add autopkgtests * Remove useless file * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * Remove trailing whitespace in debian/changelog (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Switch watch version to 4 Checksums-Sha1: de9c93acf62194e6247af9aaa59aac4aab4bf8d8 3983752 flexbar-dbgsym_3.5.0-3_armhf.deb 2e470d340a0965fdf54e6580a0a4f1ffa749171c 5653 flexbar_3.5.0-3_armhf.buildinfo b139c84d84fa43506fe7feaacea6700d2fb7fa41 304328 flexbar_3.5.0-3_armhf.deb Checksums-Sha256: 78a5f35a58d779d7bd0b01d228282153505228ceaf3e5c623014fa077600b94b 3983752 flexbar-dbgsym_3.5.0-3_armhf.deb 89d798cdeca4ae925d6d73017f4fcfa82836083bb0fd6d880ad9ea9f26fa72bb 5653 flexbar_3.5.0-3_armhf.buildinfo e773ce592520b2ee8c0938f4a5fea2426cc3bbd76ea18f3fa09162609059f7d9 304328 flexbar_3.5.0-3_armhf.deb Files: 9bd77b815304c49613311a342a053068 3983752 debug optional flexbar-dbgsym_3.5.0-3_armhf.deb 339bc73d33670962761dc6a51b635205 5653 science optional flexbar_3.5.0-3_armhf.buildinfo 1cd19a39fde031aae9ec9efb5369cf36 304328 science optional flexbar_3.5.0-3_armhf.deb Sun Jul 11 10:26:47 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.GB1vmR3stB/flexbar_3.5.0-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.GB1vmR3stB/flexbar_3.5.0-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.GB1vmR3stB/flexbar_3.5.0-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.GB1vmR3stB/b1/flexbar_3.5.0-3_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.GB1vmR3stB/b2/flexbar_3.5.0-3_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.309s) 0.309s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.072s) 0.072s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sun Jul 11 10:26:49 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Sun Jul 11 10:26:49 UTC 2021 I: flexbar from bullseye built successfully and reproducibly on armhf. Sun Jul 11 10:26:50 UTC 2021 I: Submitting .buildinfo files to external archives: Sun Jul 11 10:26:50 UTC 2021 I: Submitting 8.0K b1/flexbar_3.5.0-3_armhf.buildinfo.asc Sun Jul 11 10:26:52 UTC 2021 I: Submitting 8.0K b2/flexbar_3.5.0-3_armhf.buildinfo.asc Sun Jul 11 10:26:54 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Jul 11 10:26:54 UTC 2021 I: Done submitting .buildinfo files. Sun Jul 11 10:26:54 UTC 2021 I: Removing signed flexbar_3.5.0-3_armhf.buildinfo.asc files: removed './b1/flexbar_3.5.0-3_armhf.buildinfo.asc' removed './b2/flexbar_3.5.0-3_armhf.buildinfo.asc'