Mon Aug 16 13:46:59 UTC 2021 I: starting to build autodock-vina/bullseye/armhf on jenkins on '2021-08-16 13:46' Mon Aug 16 13:46:59 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/armhf_42/402/console.log Mon Aug 16 13:46:59 UTC 2021 I: Downloading source for bullseye/autodock-vina=1.1.2-6 --2021-08-16 13:46:59-- http://cdn-fastly.deb.debian.org/debian/pool/main/a/autodock-vina/autodock-vina_1.1.2-6.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2094 (2.0K) Saving to: ‘autodock-vina_1.1.2-6.dsc’ 0K .. 100% 14.3M=0s 2021-08-16 13:46:59 (14.3 MB/s) - ‘autodock-vina_1.1.2-6.dsc’ saved [2094/2094] Mon Aug 16 13:46:59 UTC 2021 I: autodock-vina_1.1.2-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: autodock-vina Binary: autodock-vina Architecture: any Version: 1.1.2-6 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Michael Banck , Andreas Tille Homepage: http://vina.scripps.edu Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/autodock-vina Vcs-Git: https://salsa.debian.org/med-team/autodock-vina.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libboost-all-dev Package-List: autodock-vina deb science optional arch=any Checksums-Sha1: 8d74d38dc140015e0ee30ce3bc56526ddc5c825a 69494 autodock-vina_1.1.2.orig.tar.gz 8e17f7237c1a7a9aafedb03520a6144afd22d3ef 37252 autodock-vina_1.1.2-6.debian.tar.xz Checksums-Sha256: ceda2ddc6f89d75b6de78d9d28b8d4d87de789a21c224c43f237e8acbee0283c 69494 autodock-vina_1.1.2.orig.tar.gz cc64574007cb9cf4fb317dd2ed17acc8074aa8f15a568dfe83a9e6549986165d 37252 autodock-vina_1.1.2-6.debian.tar.xz Files: 46b5893c9adcac88ca666484cc3ccfdf 69494 autodock-vina_1.1.2.orig.tar.gz 924bb9e3f766ba470f815bc7f88ddaf7 37252 autodock-vina_1.1.2-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+npN4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHrpA//bw7hK8lwflOUrs9yoJKnBpum1lE8Z5H9 wfLfeuPfWjZVknWNYzQU/4r47Sm5MOUBxcJnXw91SSX60PMBtW7owkjM30MuQihz eh4b19M7SwFEc4wFIN+NZPWQ+0HEgJfIGc3Tx1Lwko/MvrmKCQmD6pdza/fthods ET8U7pEiDj5w7rqka7KffDMRWFoRnizWN3pbgSIiQISL7u+1l3LmSTqqq0lbpppm qZlw8E3znmAJltO2x9cx2StQwYholF+RgI7ysJT5CYXiUqwGjV4aJX2yPhPeogJN c/BuWdXeFVw++b2V7IZO4axR0QAPprjISF4p7O4nQCVrSW/ltwR4VWbBK/8ZEF6g yR5hnXa5wXrt34zJrwp58V9lOMdrZNO6lIhbamn8JqH41j8BurJ27TJbsXUTWapk v3ukLurM+DegOOjMrQEJm1HiGVZhAszDsty67v8S28qnMSIMFddfTZdKu5OkzyQd 5tuapnhJAj0iNP1zmVoUp3EB6E3mbvyUHbRJieqmI9cD+bOs5sepGqAo30jEbjg2 hAj4iHcvGKu+IZhmJFM8wvewFwoERhEJ1xS0DiEb15AznqHtuBSCriBvCaiIBIBW XDn8rQYQf+ZfHf4a2wtNcF/AcZb7gMs6Dwm13p3Iv5sm7UkaML/mhbrynhqkkf9w JCRcDMjC1u8= =3KRP -----END PGP SIGNATURE----- Mon Aug 16 13:47:00 UTC 2021 I: Checking whether the package is not for us Mon Aug 16 13:47:00 UTC 2021 I: Starting 1st build on remote node cbxi4pro0-armhf-rb.debian.net. Mon Aug 16 13:47:00 UTC 2021 I: Preparing to do remote build '1' on cbxi4pro0-armhf-rb.debian.net. Mon Aug 16 14:03:44 UTC 2021 I: Deleting $TMPDIR on cbxi4pro0-armhf-rb.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Aug 16 01:47:09 -12 2021 I: pbuilder-time-stamp: 1629121629 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [autodock-vina_1.1.2-6.dsc] I: copying [./autodock-vina_1.1.2.orig.tar.gz] I: copying [./autodock-vina_1.1.2-6.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.aZZFYATd/trustedkeys.kbx': General error gpgv: Signature made Sat Nov 7 19:57:18 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./autodock-vina_1.1.2-6.dsc dpkg-source: info: extracting autodock-vina in autodock-vina-1.1.2 dpkg-source: info: unpacking autodock-vina_1.1.2.orig.tar.gz dpkg-source: info: unpacking autodock-vina_1.1.2-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove_static.patch dpkg-source: info: applying do_not_link_against_unneeded_libs.patch dpkg-source: info: applying annoying_static_removed_was_in_for_a_reason_questionmark.patch dpkg-source: info: applying fix_boost.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/31668/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='armhf' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=3' DISTRIBUTION='' HOME='/root' HOST_ARCH='armhf' IFS=' ' INVOCATION_ID='7dedaf076c7642eda073c2e54c76075a' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='31668' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ekXvc8xUWr/pbuilderrc_GAy5 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ekXvc8xUWr/b1 --logfile b1/build.log autodock-vina_1.1.2-6.dsc' SUDO_GID='115' SUDO_UID='111' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://10.0.0.15:8000/' I: uname -a Linux cbxi4pro0 5.10.0-8-armmp #1 SMP Debian 5.10.46-4 (2021-08-03) armv7l GNU/Linux I: ls -l /bin total 3580 -rwxr-xr-x 1 root root 816764 Aug 4 08:25 bash -rwxr-xr-x 3 root root 26052 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 26052 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 9636 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 26668 Sep 22 2020 cat -rwxr-xr-x 1 root root 43104 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 38984 Sep 22 2020 chmod -rwxr-xr-x 1 root root 43112 Sep 22 2020 chown -rwxr-xr-x 1 root root 92616 Sep 22 2020 cp -rwxr-xr-x 1 root root 75524 Dec 10 2020 dash -rwxr-xr-x 1 root root 75880 Sep 22 2020 date -rwxr-xr-x 1 root root 55436 Sep 22 2020 dd -rwxr-xr-x 1 root root 59912 Sep 22 2020 df -rwxr-xr-x 1 root root 96764 Sep 22 2020 dir -rwxr-xr-x 1 root root 55012 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 22508 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 22496 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 47492 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 26076 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 124508 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 64212 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 13784 Nov 6 2019 hostname -rwxr-xr-x 1 root root 43180 Sep 22 2020 ln -rwxr-xr-x 1 root root 35068 Feb 7 2020 login -rwxr-xr-x 1 root root 96764 Sep 22 2020 ls -rwxr-xr-x 1 root root 99940 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 51408 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 43184 Sep 22 2020 mknod -rwxr-xr-x 1 root root 30780 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 34408 Jul 28 07:09 more -rwsr-xr-x 1 root root 34400 Jul 28 07:09 mount -rwxr-xr-x 1 root root 9824 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 88524 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 26652 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 30740 Sep 22 2020 readlink -rwxr-xr-x 1 root root 43104 Sep 22 2020 rm -rwxr-xr-x 1 root root 30732 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 14144 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 76012 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 15 21:28 sh -> dash -rwxr-xr-x 1 root root 22532 Sep 22 2020 sleep -rwxr-xr-x 1 root root 55360 Sep 22 2020 stty -rwsr-xr-x 1 root root 46704 Jul 28 07:09 su -rwxr-xr-x 1 root root 22532 Sep 22 2020 sync -rwxr-xr-x 1 root root 340872 Feb 16 21:55 tar -rwxr-xr-x 1 root root 9808 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 67696 Sep 22 2020 touch -rwxr-xr-x 1 root root 22496 Sep 22 2020 true -rwxr-xr-x 1 root root 9636 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 22108 Jul 28 07:09 umount -rwxr-xr-x 1 root root 22520 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 96764 Sep 22 2020 vdir -rwxr-xr-x 1 root root 38512 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/31668/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: armhf Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libboost-all-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19398 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-all-dev; however: Package libboost-all-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran-10{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libboost-all-dev{a} libboost-atomic-dev{a} libboost-atomic1.74-dev{a} libboost-atomic1.74.0{a} libboost-chrono-dev{a} libboost-chrono1.74-dev{a} libboost-chrono1.74.0{a} libboost-container-dev{a} libboost-container1.74-dev{a} libboost-container1.74.0{a} libboost-context-dev{a} libboost-context1.74-dev{a} libboost-context1.74.0{a} libboost-coroutine-dev{a} libboost-coroutine1.74-dev{a} libboost-coroutine1.74.0{a} libboost-date-time-dev{a} libboost-date-time1.74-dev{a} libboost-date-time1.74.0{a} libboost-dev{a} libboost-exception-dev{a} libboost-exception1.74-dev{a} libboost-fiber-dev{a} libboost-fiber1.74-dev{a} libboost-fiber1.74.0{a} libboost-filesystem-dev{a} libboost-filesystem1.74-dev{a} libboost-filesystem1.74.0{a} libboost-graph-dev{a} libboost-graph-parallel-dev{a} libboost-graph-parallel1.74-dev{a} libboost-graph-parallel1.74.0{a} libboost-graph1.74-dev{a} libboost-graph1.74.0{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-locale-dev{a} libboost-locale1.74-dev{a} libboost-locale1.74.0{a} libboost-log-dev{a} libboost-log1.74-dev{a} libboost-log1.74.0{a} libboost-math-dev{a} libboost-math1.74-dev{a} libboost-math1.74.0{a} libboost-mpi-dev{a} libboost-mpi-python-dev{a} libboost-mpi-python1.74-dev{a} libboost-mpi-python1.74.0{a} libboost-mpi1.74-dev{a} libboost-mpi1.74.0{a} libboost-nowide-dev{a} libboost-nowide1.74-dev{a} libboost-nowide1.74.0{a} libboost-numpy-dev{a} libboost-numpy1.74-dev{a} libboost-numpy1.74.0{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-python-dev{a} libboost-python1.74-dev{a} libboost-python1.74.0{a} libboost-random-dev{a} libboost-random1.74-dev{a} libboost-random1.74.0{a} libboost-regex-dev{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-serialization-dev{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-stacktrace-dev{a} libboost-stacktrace1.74-dev{a} libboost-stacktrace1.74.0{a} libboost-system-dev{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost-test-dev{a} libboost-test1.74-dev{a} libboost-test1.74.0{a} libboost-thread-dev{a} libboost-thread1.74-dev{a} libboost-thread1.74.0{a} libboost-timer-dev{a} libboost-timer1.74-dev{a} libboost-timer1.74.0{a} libboost-tools-dev{a} libboost-type-erasure-dev{a} libboost-type-erasure1.74-dev{a} libboost-type-erasure1.74.0{a} libboost-wave-dev{a} libboost-wave1.74-dev{a} libboost-wave1.74.0{a} libboost1.74-dev{a} libboost1.74-tools-dev{a} libbsd0{a} libcbor0{a} libdebhelper-perl{a} libedit2{a} libelf1{a} libevent-2.1-7{a} libevent-core-2.1-7{a} libevent-dev{a} libevent-extra-2.1-7{a} libevent-openssl-2.1-7{a} libevent-pthreads-2.1-7{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgfortran-10-dev{a} libgfortran5{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu67{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpmix-dev{a} libpmix2{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} librdmacm1{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} po-debconf{a} python3{a} python3-dev{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libcoarrays-openmpi-dev libmail-sendmail-perl lynx wget xauth 0 packages upgraded, 202 newly installed, 0 to remove and 0 not upgraded. Need to get 86.3 MB of archives. After unpacking 507 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main armhf bsdextrautils armhf 2.36.1-8 [138 kB] Get: 2 http://deb.debian.org/debian bullseye/main armhf libuchardet0 armhf 0.0.7-1 [65.0 kB] Get: 3 http://deb.debian.org/debian bullseye/main armhf groff-base armhf 1.22.4-6 [847 kB] Get: 4 http://deb.debian.org/debian bullseye/main armhf libpipeline1 armhf 1.5.3-1 [30.1 kB] Get: 5 http://deb.debian.org/debian bullseye/main armhf man-db armhf 2.9.4-2 [1319 kB] Get: 6 http://deb.debian.org/debian bullseye/main armhf libpython3.9-minimal armhf 3.9.2-1 [790 kB] Get: 7 http://deb.debian.org/debian bullseye/main armhf libexpat1 armhf 2.2.10-2 [76.3 kB] Get: 8 http://deb.debian.org/debian bullseye/main armhf python3.9-minimal armhf 3.9.2-1 [1630 kB] Get: 9 http://deb.debian.org/debian bullseye/main armhf python3-minimal armhf 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main armhf media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main armhf libmpdec3 armhf 2.5.1-1 [74.9 kB] Get: 12 http://deb.debian.org/debian bullseye/main armhf readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main armhf libreadline8 armhf 8.1-1 [147 kB] Get: 14 http://deb.debian.org/debian bullseye/main armhf libpython3.9-stdlib armhf 3.9.2-1 [1608 kB] Get: 15 http://deb.debian.org/debian bullseye/main armhf python3.9 armhf 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main armhf libpython3-stdlib armhf 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main armhf python3 armhf 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main armhf sensible-utils all 0.0.14 [14.8 kB] Get: 19 http://deb.debian.org/debian bullseye/main armhf libmagic-mgc armhf 1:5.39-3 [273 kB] Get: 20 http://deb.debian.org/debian bullseye/main armhf libmagic1 armhf 1:5.39-3 [117 kB] Get: 21 http://deb.debian.org/debian bullseye/main armhf file armhf 1:5.39-3 [68.1 kB] Get: 22 http://deb.debian.org/debian bullseye/main armhf gettext-base armhf 0.21-4 [171 kB] Get: 23 http://deb.debian.org/debian bullseye/main armhf libmd0 armhf 1.0.3-3 [27.4 kB] Get: 24 http://deb.debian.org/debian bullseye/main armhf libbsd0 armhf 0.11.3-1 [103 kB] Get: 25 http://deb.debian.org/debian bullseye/main armhf libedit2 armhf 3.1-20191231-2+b1 [81.1 kB] Get: 26 http://deb.debian.org/debian bullseye/main armhf libcbor0 armhf 0.5.0+dfsg-2 [19.6 kB] Get: 27 http://deb.debian.org/debian bullseye/main armhf libfido2-1 armhf 1.6.0-2 [48.0 kB] Get: 28 http://deb.debian.org/debian bullseye/main armhf openssh-client armhf 1:8.4p1-5 [842 kB] Get: 29 http://deb.debian.org/debian bullseye/main armhf libsigsegv2 armhf 2.13-1 [34.0 kB] Get: 30 http://deb.debian.org/debian bullseye/main armhf m4 armhf 1.4.18-5 [192 kB] Get: 31 http://deb.debian.org/debian bullseye/main armhf autoconf all 2.69-14 [313 kB] Get: 32 http://deb.debian.org/debian bullseye/main armhf autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 33 http://deb.debian.org/debian bullseye/main armhf automake all 1:1.16.3-2 [814 kB] Get: 34 http://deb.debian.org/debian bullseye/main armhf autopoint all 0.21-4 [510 kB] Get: 35 http://deb.debian.org/debian bullseye/main armhf libdebhelper-perl all 13.3.4 [189 kB] Get: 36 http://deb.debian.org/debian bullseye/main armhf libtool all 2.4.6-15 [513 kB] Get: 37 http://deb.debian.org/debian bullseye/main armhf dh-autoreconf all 20 [17.1 kB] Get: 38 http://deb.debian.org/debian bullseye/main armhf libarchive-zip-perl all 1.68-1 [104 kB] Get: 39 http://deb.debian.org/debian bullseye/main armhf libsub-override-perl all 0.09-2 [10.2 kB] Get: 40 http://deb.debian.org/debian bullseye/main armhf libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 41 http://deb.debian.org/debian bullseye/main armhf dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 42 http://deb.debian.org/debian bullseye/main armhf libelf1 armhf 0.183-1 [161 kB] Get: 43 http://deb.debian.org/debian bullseye/main armhf dwz armhf 0.13+20210201-1 [179 kB] Get: 44 http://deb.debian.org/debian bullseye/main armhf libicu67 armhf 67.1-7 [8319 kB] Get: 45 http://deb.debian.org/debian bullseye/main armhf libxml2 armhf 2.9.10+dfsg-6.7 [602 kB] Get: 46 http://deb.debian.org/debian bullseye/main armhf gettext armhf 0.21-4 [1243 kB] Get: 47 http://deb.debian.org/debian bullseye/main armhf intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 48 http://deb.debian.org/debian bullseye/main armhf po-debconf all 1.0.21+nmu1 [248 kB] Get: 49 http://deb.debian.org/debian bullseye/main armhf debhelper all 13.3.4 [1049 kB] Get: 50 http://deb.debian.org/debian bullseye/main armhf libgfortran5 armhf 10.2.1-6 [237 kB] Get: 51 http://deb.debian.org/debian bullseye/main armhf libgfortran-10-dev armhf 10.2.1-6 [289 kB] Get: 52 http://deb.debian.org/debian bullseye/main armhf gfortran-10 armhf 10.2.1-6 [7123 kB] Get: 53 http://deb.debian.org/debian bullseye/main armhf libnl-3-200 armhf 3.4.0-1+b1 [55.5 kB] Get: 54 http://deb.debian.org/debian bullseye/main armhf libnl-route-3-200 armhf 3.4.0-1+b1 [136 kB] Get: 55 http://deb.debian.org/debian bullseye/main armhf libibverbs1 armhf 33.2-1 [53.0 kB] Get: 56 http://deb.debian.org/debian bullseye/main armhf ibverbs-providers armhf 33.2-1 [25.4 kB] Get: 57 http://deb.debian.org/debian bullseye/main armhf icu-devtools armhf 67.1-7 [180 kB] Get: 58 http://deb.debian.org/debian bullseye/main armhf libboost1.74-dev armhf 1.74.0-9 [9534 kB] Get: 59 http://deb.debian.org/debian bullseye/main armhf libboost-dev armhf 1.74.0.3 [4548 B] Get: 60 http://deb.debian.org/debian bullseye/main armhf libboost1.74-tools-dev armhf 1.74.0-9 [1322 kB] Get: 61 http://deb.debian.org/debian bullseye/main armhf libboost-tools-dev armhf 1.74.0.3 [4508 B] Get: 62 http://deb.debian.org/debian bullseye/main armhf libboost-atomic1.74.0 armhf 1.74.0-9 [244 kB] Get: 63 http://deb.debian.org/debian bullseye/main armhf libboost-atomic1.74-dev armhf 1.74.0-9 [245 kB] Get: 64 http://deb.debian.org/debian bullseye/main armhf libboost-atomic-dev armhf 1.74.0.3 [4640 B] Get: 65 http://deb.debian.org/debian bullseye/main armhf libboost-chrono1.74.0 armhf 1.74.0-9 [248 kB] Get: 66 http://deb.debian.org/debian bullseye/main armhf libboost-chrono1.74-dev armhf 1.74.0-9 [255 kB] Get: 67 http://deb.debian.org/debian bullseye/main armhf libboost-chrono-dev armhf 1.74.0.3 [4960 B] Get: 68 http://deb.debian.org/debian bullseye/main armhf libboost-container1.74.0 armhf 1.74.0-9 [265 kB] Get: 69 http://deb.debian.org/debian bullseye/main armhf libboost-container1.74-dev armhf 1.74.0-9 [271 kB] Get: 70 http://deb.debian.org/debian bullseye/main armhf libboost-container-dev armhf 1.74.0.3 [4812 B] Get: 71 http://deb.debian.org/debian bullseye/main armhf libboost-date-time1.74.0 armhf 1.74.0-9 [241 kB] Get: 72 http://deb.debian.org/debian bullseye/main armhf libboost-serialization1.74.0 armhf 1.74.0-9 [321 kB] Get: 73 http://deb.debian.org/debian bullseye/main armhf libboost-serialization1.74-dev armhf 1.74.0-9 [394 kB] Get: 74 http://deb.debian.org/debian bullseye/main armhf libboost-date-time1.74-dev armhf 1.74.0-9 [250 kB] Get: 75 http://deb.debian.org/debian bullseye/main armhf libboost-system1.74.0 armhf 1.74.0-9 [242 kB] Get: 76 http://deb.debian.org/debian bullseye/main armhf libboost-system1.74-dev armhf 1.74.0-9 [243 kB] Get: 77 http://deb.debian.org/debian bullseye/main armhf libboost-thread1.74.0 armhf 1.74.0-9 [271 kB] Get: 78 http://deb.debian.org/debian bullseye/main armhf libboost-thread1.74-dev armhf 1.74.0-9 [286 kB] Get: 79 http://deb.debian.org/debian bullseye/main armhf libboost-context1.74.0 armhf 1.74.0-9 [243 kB] Get: 80 http://deb.debian.org/debian bullseye/main armhf libboost-context1.74-dev armhf 1.74.0-9 [244 kB] Get: 81 http://deb.debian.org/debian bullseye/main armhf libboost-context-dev armhf 1.74.0.3 [4540 B] Get: 82 http://deb.debian.org/debian bullseye/main armhf libboost-coroutine1.74.0 armhf 1.74.0-9 [251 kB] Get: 83 http://deb.debian.org/debian bullseye/main armhf libboost-coroutine1.74-dev armhf 1.74.0-9 [258 kB] Get: 84 http://deb.debian.org/debian bullseye/main armhf libboost-coroutine-dev armhf 1.74.0.3 [4608 B] Get: 85 http://deb.debian.org/debian bullseye/main armhf libboost-date-time-dev armhf 1.74.0.3 [4332 B] Get: 86 http://deb.debian.org/debian bullseye/main armhf libboost-exception1.74-dev armhf 1.74.0-9 [241 kB] Get: 87 http://deb.debian.org/debian bullseye/main armhf libboost-exception-dev armhf 1.74.0.3 [4320 B] Get: 88 http://deb.debian.org/debian bullseye/main armhf libboost-filesystem1.74.0 armhf 1.74.0-9 [275 kB] Get: 89 http://deb.debian.org/debian bullseye/main armhf libboost-filesystem1.74-dev armhf 1.74.0-9 [289 kB] Get: 90 http://deb.debian.org/debian bullseye/main armhf libboost-fiber1.74.0 armhf 1.74.0-9 [261 kB] Get: 91 http://deb.debian.org/debian bullseye/main armhf libboost-fiber1.74-dev armhf 1.74.0-9 [277 kB] Get: 92 http://deb.debian.org/debian bullseye/main armhf libboost-fiber-dev armhf 1.74.0.3 [4760 B] Get: 93 http://deb.debian.org/debian bullseye/main armhf libboost-filesystem-dev armhf 1.74.0.3 [4368 B] Get: 94 http://deb.debian.org/debian bullseye/main armhf libboost-regex1.74.0 armhf 1.74.0-9 [459 kB] Get: 95 http://deb.debian.org/debian bullseye/main armhf libboost-graph1.74.0 armhf 1.74.0-9 [310 kB] Get: 96 http://deb.debian.org/debian bullseye/main armhf libicu-dev armhf 67.1-7 [9343 kB] Get: 97 http://deb.debian.org/debian bullseye/main armhf libboost-regex1.74-dev armhf 1.74.0-9 [572 kB] Get: 98 http://deb.debian.org/debian bullseye/main armhf libboost-test1.74.0 armhf 1.74.0-9 [435 kB] Get: 99 http://deb.debian.org/debian bullseye/main armhf libboost-test1.74-dev armhf 1.74.0-9 [544 kB] Get: 100 http://deb.debian.org/debian bullseye/main armhf libboost-graph1.74-dev armhf 1.74.0-9 [345 kB] Get: 101 http://deb.debian.org/debian bullseye/main armhf libboost-graph-dev armhf 1.74.0.3 [4436 B] Get: 102 http://deb.debian.org/debian bullseye/main armhf libevent-core-2.1-7 armhf 2.1.12-stable-1 [127 kB] Get: 103 http://deb.debian.org/debian bullseye/main armhf libevent-pthreads-2.1-7 armhf 2.1.12-stable-1 [56.8 kB] Get: 104 http://deb.debian.org/debian bullseye/main armhf librdmacm1 armhf 33.2-1 [60.8 kB] Get: 105 http://deb.debian.org/debian bullseye/main armhf libfabric1 armhf 1.11.0-2 [319 kB] Get: 106 http://deb.debian.org/debian bullseye/main armhf libhwloc15 armhf 2.4.1+dfsg-1 [125 kB] Get: 107 http://deb.debian.org/debian bullseye/main armhf libpciaccess0 armhf 0.16-1 [51.0 kB] Get: 108 http://deb.debian.org/debian bullseye/main armhf libxau6 armhf 1:1.0.9-1 [19.0 kB] Get: 109 http://deb.debian.org/debian bullseye/main armhf libxdmcp6 armhf 1:1.1.2-3 [24.9 kB] Get: 110 http://deb.debian.org/debian bullseye/main armhf libxcb1 armhf 1.14-3 [136 kB] Get: 111 http://deb.debian.org/debian bullseye/main armhf libx11-data all 2:1.7.2-1 [311 kB] Get: 112 http://deb.debian.org/debian bullseye/main armhf libx11-6 armhf 2:1.7.2-1 [713 kB] Get: 113 http://deb.debian.org/debian bullseye/main armhf libxext6 armhf 2:1.3.3-1.1 [47.8 kB] Get: 114 http://deb.debian.org/debian bullseye/main armhf libxnvctrl0 armhf 460.91.03-1 [25.8 kB] Get: 115 http://deb.debian.org/debian bullseye/main armhf ocl-icd-libopencl1 armhf 2.2.14-2 [39.7 kB] Get: 116 http://deb.debian.org/debian bullseye/main armhf libhwloc-plugins armhf 2.4.1+dfsg-1 [19.7 kB] Get: 117 http://deb.debian.org/debian bullseye/main armhf libpmix2 armhf 4.0.0-4.1 [487 kB] Get: 118 http://deb.debian.org/debian bullseye/main armhf libopenmpi3 armhf 4.1.0-10 [1831 kB] Get: 119 http://deb.debian.org/debian bullseye/main armhf libboost-mpi1.74.0 armhf 1.74.0-9 [274 kB] Get: 120 http://deb.debian.org/debian bullseye/main armhf libboost-graph-parallel1.74.0 armhf 1.74.0-9 [283 kB] Get: 121 http://deb.debian.org/debian bullseye/main armhf libboost-graph-parallel1.74-dev armhf 1.74.0-9 [295 kB] Get: 122 http://deb.debian.org/debian bullseye/main armhf libboost-graph-parallel-dev armhf 1.74.0.3 [4460 B] Get: 123 http://deb.debian.org/debian bullseye/main armhf libboost-iostreams1.74-dev armhf 1.74.0-9 [271 kB] Get: 124 http://deb.debian.org/debian bullseye/main armhf libboost-iostreams-dev armhf 1.74.0.3 [4316 B] Get: 125 http://deb.debian.org/debian bullseye/main armhf libboost-locale1.74.0 armhf 1.74.0-9 [444 kB] Get: 126 http://deb.debian.org/debian bullseye/main armhf libboost-locale1.74-dev armhf 1.74.0-9 [583 kB] Get: 127 http://deb.debian.org/debian bullseye/main armhf libboost-locale-dev armhf 1.74.0.3 [4660 B] Get: 128 http://deb.debian.org/debian bullseye/main armhf libboost-log1.74.0 armhf 1.74.0-9 [551 kB] Get: 129 http://deb.debian.org/debian bullseye/main armhf libboost-log1.74-dev armhf 1.74.0-9 [775 kB] Get: 130 http://deb.debian.org/debian bullseye/main armhf libboost-log-dev armhf 1.74.0.3 [4540 B] Get: 131 http://deb.debian.org/debian bullseye/main armhf libboost-math1.74.0 armhf 1.74.0-9 [350 kB] Get: 132 http://deb.debian.org/debian bullseye/main armhf libboost-math1.74-dev armhf 1.74.0-9 [410 kB] Get: 133 http://deb.debian.org/debian bullseye/main armhf libboost-math-dev armhf 1.74.0.3 [4532 B] Get: 134 http://deb.debian.org/debian bullseye/main armhf openmpi-common all 4.1.0-10 [179 kB] Get: 135 http://deb.debian.org/debian bullseye/main armhf libnl-3-dev armhf 3.4.0-1+b1 [97.1 kB] Get: 136 http://deb.debian.org/debian bullseye/main armhf libnl-route-3-dev armhf 3.4.0-1+b1 [160 kB] Get: 137 http://deb.debian.org/debian bullseye/main armhf libibverbs-dev armhf 33.2-1 [183 kB] Get: 138 http://deb.debian.org/debian bullseye/main armhf libnuma1 armhf 2.0.12-1+b1 [22.7 kB] Get: 139 http://deb.debian.org/debian bullseye/main armhf libnuma-dev armhf 2.0.12-1+b1 [37.0 kB] Get: 140 http://deb.debian.org/debian bullseye/main armhf libltdl7 armhf 2.4.6-15 [388 kB] Get: 141 http://deb.debian.org/debian bullseye/main armhf libltdl-dev armhf 2.4.6-15 [159 kB] Get: 142 http://deb.debian.org/debian bullseye/main armhf libhwloc-dev armhf 2.4.1+dfsg-1 [208 kB] Get: 143 http://deb.debian.org/debian bullseye/main armhf libevent-2.1-7 armhf 2.1.12-stable-1 [169 kB] Get: 144 http://deb.debian.org/debian bullseye/main armhf libevent-extra-2.1-7 armhf 2.1.12-stable-1 [101 kB] Get: 145 http://deb.debian.org/debian bullseye/main armhf libevent-openssl-2.1-7 armhf 2.1.12-stable-1 [61.6 kB] Get: 146 http://deb.debian.org/debian bullseye/main armhf libevent-dev armhf 2.1.12-stable-1 [296 kB] Get: 147 http://deb.debian.org/debian bullseye/main armhf zlib1g-dev armhf 1:1.2.11.dfsg-2 [185 kB] Get: 148 http://deb.debian.org/debian bullseye/main armhf libpmix-dev armhf 4.0.0-4.1 [618 kB] Get: 149 http://deb.debian.org/debian bullseye/main armhf libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 150 http://deb.debian.org/debian bullseye/main armhf libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB] Get: 151 http://deb.debian.org/debian bullseye/main armhf openmpi-bin armhf 4.1.0-10 [206 kB] Get: 152 http://deb.debian.org/debian bullseye/main armhf libopenmpi-dev armhf 4.1.0-10 [1143 kB] Get: 153 http://deb.debian.org/debian bullseye/main armhf mpi-default-dev armhf 1.13 [5476 B] Get: 154 http://deb.debian.org/debian bullseye/main armhf libboost-mpi1.74-dev armhf 1.74.0-9 [303 kB] Get: 155 http://deb.debian.org/debian bullseye/main armhf libboost-mpi-dev armhf 1.74.0.3 [4420 B] Get: 156 http://deb.debian.org/debian bullseye/main armhf libboost-python1.74.0 armhf 1.74.0-9 [301 kB] Get: 157 http://deb.debian.org/debian bullseye/main armhf mpi-default-bin armhf 1.13 [4672 B] Get: 158 http://deb.debian.org/debian bullseye/main armhf libboost-mpi-python1.74.0 armhf 1.74.0-9 [246 kB] Get: 159 http://deb.debian.org/debian bullseye/main armhf libboost-mpi-python1.74-dev armhf 1.74.0-9 [248 kB] Get: 160 http://deb.debian.org/debian bullseye/main armhf libboost-mpi-python-dev armhf 1.74.0.3 [4456 B] Get: 161 http://deb.debian.org/debian bullseye/main armhf libboost-numpy1.74.0 armhf 1.74.0-9 [250 kB] Get: 162 http://deb.debian.org/debian bullseye/main armhf libboost-numpy1.74-dev armhf 1.74.0-9 [256 kB] Get: 163 http://deb.debian.org/debian bullseye/main armhf libboost-numpy-dev armhf 1.74.0.3 [4376 B] Get: 164 http://deb.debian.org/debian bullseye/main armhf libboost-program-options1.74.0 armhf 1.74.0-9 [339 kB] Get: 165 http://deb.debian.org/debian bullseye/main armhf libboost-program-options1.74-dev armhf 1.74.0-9 [384 kB] Get: 166 http://deb.debian.org/debian bullseye/main armhf libboost-program-options-dev armhf 1.74.0.3 [4340 B] Get: 167 http://deb.debian.org/debian bullseye/main armhf libpython3.9 armhf 3.9.2-1 [1447 kB] Get: 168 http://deb.debian.org/debian bullseye/main armhf libexpat1-dev armhf 2.2.10-2 [123 kB] Get: 169 http://deb.debian.org/debian bullseye/main armhf libpython3.9-dev armhf 3.9.2-1 [3160 kB] Get: 170 http://deb.debian.org/debian bullseye/main armhf libpython3-dev armhf 3.9.2-3 [21.7 kB] Get: 171 http://deb.debian.org/debian bullseye/main armhf python3.9-dev armhf 3.9.2-1 [515 kB] Get: 172 http://deb.debian.org/debian bullseye/main armhf python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 173 http://deb.debian.org/debian bullseye/main armhf python3-distutils all 3.9.2-1 [143 kB] Get: 174 http://deb.debian.org/debian bullseye/main armhf libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 175 http://deb.debian.org/debian bullseye/main armhf libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 176 http://deb.debian.org/debian bullseye/main armhf python3-dev armhf 3.9.2-3 [24.8 kB] Get: 177 http://deb.debian.org/debian bullseye/main armhf libboost-python1.74-dev armhf 1.74.0-9 [330 kB] Get: 178 http://deb.debian.org/debian bullseye/main armhf libboost-python-dev armhf 1.74.0.3 [4632 B] Get: 179 http://deb.debian.org/debian bullseye/main armhf libboost-random1.74.0 armhf 1.74.0-9 [246 kB] Get: 180 http://deb.debian.org/debian bullseye/main armhf libboost-random1.74-dev armhf 1.74.0-9 [250 kB] Get: 181 http://deb.debian.org/debian bullseye/main armhf libboost-random-dev armhf 1.74.0.3 [4336 B] Get: 182 http://deb.debian.org/debian bullseye/main armhf libboost-regex-dev armhf 1.74.0.3 [4596 B] Get: 183 http://deb.debian.org/debian bullseye/main armhf libboost-serialization-dev armhf 1.74.0.3 [4560 B] Get: 184 http://deb.debian.org/debian bullseye/main armhf libboost-stacktrace1.74.0 armhf 1.74.0-9 [273 kB] Get: 185 http://deb.debian.org/debian bullseye/main armhf libboost-stacktrace1.74-dev armhf 1.74.0-9 [255 kB] Get: 186 http://deb.debian.org/debian bullseye/main armhf libboost-stacktrace-dev armhf 1.74.0.3 [4328 B] Get: 187 http://deb.debian.org/debian bullseye/main armhf libboost-system-dev armhf 1.74.0.3 [4468 B] Get: 188 http://deb.debian.org/debian bullseye/main armhf libboost-test-dev armhf 1.74.0.3 [4364 B] Get: 189 http://deb.debian.org/debian bullseye/main armhf libboost-thread-dev armhf 1.74.0.3 [4356 B] Get: 190 http://deb.debian.org/debian bullseye/main armhf libboost-timer1.74.0 armhf 1.74.0-9 [246 kB] Get: 191 http://deb.debian.org/debian bullseye/main armhf libboost-timer1.74-dev armhf 1.74.0-9 [248 kB] Get: 192 http://deb.debian.org/debian bullseye/main armhf libboost-timer-dev armhf 1.74.0.3 [4456 B] Get: 193 http://deb.debian.org/debian bullseye/main armhf libboost-type-erasure1.74.0 armhf 1.74.0-9 [251 kB] Get: 194 http://deb.debian.org/debian bullseye/main armhf libboost-type-erasure1.74-dev armhf 1.74.0-9 [256 kB] Get: 195 http://deb.debian.org/debian bullseye/main armhf libboost-type-erasure-dev armhf 1.74.0.3 [4428 B] Get: 196 http://deb.debian.org/debian bullseye/main armhf libboost-wave1.74.0 armhf 1.74.0-9 [414 kB] Get: 197 http://deb.debian.org/debian bullseye/main armhf libboost-wave1.74-dev armhf 1.74.0-9 [503 kB] Get: 198 http://deb.debian.org/debian bullseye/main armhf libboost-wave-dev armhf 1.74.0.3 [4360 B] Get: 199 http://deb.debian.org/debian bullseye/main armhf libboost-nowide1.74.0 armhf 1.74.0-9 [243 kB] Get: 200 http://deb.debian.org/debian bullseye/main armhf libboost-nowide1.74-dev armhf 1.74.0-9 [244 kB] Get: 201 http://deb.debian.org/debian bullseye/main armhf libboost-nowide-dev armhf 1.74.0.3 [4392 B] Get: 202 http://deb.debian.org/debian bullseye/main armhf libboost-all-dev armhf 1.74.0.3 [4680 B] Fetched 86.3 MB in 10s (8801 kB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/autodock-vina-1.1.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../autodock-vina_1.1.2-6_source.changes dpkg-buildpackage: info: source package autodock-vina dpkg-buildpackage: info: source version 1.1.2-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/autodock-vina-1.1.2' dh_clean rm -f build/linux/release/*.o build/linux/release/vina* make[1]: Leaving directory '/build/autodock-vina-1.1.2' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/autodock-vina-1.1.2' /usr/bin/make BASE=/usr -C build/linux/release CLFAGS="-g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto" CXXFLAGS="-g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto" LDFLAGS="-Wl,-z,relro -Wl,-z,now --lto -g" make[2]: Entering directory '/build/autodock-vina-1.1.2/build/linux/release' g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -I ../../../src/lib -o main.o -c ../../../src/main/main.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/program_options/options_description.hpp:16, from /usr/include/boost/program_options.hpp:15, from ../../../src/main/main.cpp:28: /usr/include/boost/math/tools/cxx03_warn.hpp:99:1: note: '#pragma message: CAUTION: One or more C++11 features were found to be unavailable' 99 | BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:100:1: note: '#pragma message: CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.' 100 | BOOST_PRAGMA_MESSAGE("CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:101:1: note: '#pragma message: CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.' 101 | BOOST_PRAGMA_MESSAGE("CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:102:1: note: '#pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_NOEXCEPT' 102 | BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) | ^~~~~~~~~~~~~~~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o cache.o -c ../../../src/lib/cache.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/archive/detail/helper_collection.hpp:27, from /usr/include/boost/archive/detail/basic_oarchive.hpp:26, from /usr/include/boost/archive/detail/common_oarchive.hpp:21, from /usr/include/boost/archive/basic_text_oarchive.hpp:29, from /usr/include/boost/archive/text_oarchive.hpp:31, from ../../../src/lib/cache.cpp:32: /usr/include/boost/math/tools/cxx03_warn.hpp:99:1: note: '#pragma message: CAUTION: One or more C++11 features were found to be unavailable' 99 | BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:100:1: note: '#pragma message: CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.' 100 | BOOST_PRAGMA_MESSAGE("CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:101:1: note: '#pragma message: CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.' 101 | BOOST_PRAGMA_MESSAGE("CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:102:1: note: '#pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_NOEXCEPT' 102 | BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) | ^~~~~~~~~~~~~~~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o coords.o -c ../../../src/lib/coords.cpp In file included from /usr/include/boost/math/tools/cxx03_warn.hpp:9, from /usr/include/boost/math/quaternion.hpp:28, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/coords.h:26, from ../../../src/lib/coords.cpp:23: /usr/include/boost/math/tools/cxx03_warn.hpp:99:1: note: '#pragma message: CAUTION: One or more C++11 features were found to be unavailable' 99 | BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:100:1: note: '#pragma message: CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.' 100 | BOOST_PRAGMA_MESSAGE("CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:101:1: note: '#pragma message: CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.' 101 | BOOST_PRAGMA_MESSAGE("CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:102:1: note: '#pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_NOEXCEPT' 102 | BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) | ^~~~~~~~~~~~~~~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o current_weights.o -c ../../../src/lib/current_weights.cpp In file included from /usr/include/boost/math/tools/cxx03_warn.hpp:9, from /usr/include/boost/math/quaternion.hpp:28, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/terms.h:27, from ../../../src/lib/current_weights.h:26, from ../../../src/lib/current_weights.cpp:23: /usr/include/boost/math/tools/cxx03_warn.hpp:99:1: note: '#pragma message: CAUTION: One or more C++11 features were found to be unavailable' 99 | BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:100:1: note: '#pragma message: CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.' 100 | BOOST_PRAGMA_MESSAGE("CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:101:1: note: '#pragma message: CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.' 101 | BOOST_PRAGMA_MESSAGE("CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:102:1: note: '#pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_NOEXCEPT' 102 | BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) | ^~~~~~~~~~~~~~~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o everything.o -c ../../../src/lib/everything.cpp In file included from /usr/include/boost/math/tools/cxx03_warn.hpp:9, from /usr/include/boost/math/quaternion.hpp:28, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/terms.h:27, from ../../../src/lib/everything.h:26, from ../../../src/lib/everything.cpp:23: /usr/include/boost/math/tools/cxx03_warn.hpp:99:1: note: '#pragma message: CAUTION: One or more C++11 features were found to be unavailable' 99 | BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:100:1: note: '#pragma message: CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.' 100 | BOOST_PRAGMA_MESSAGE("CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:101:1: note: '#pragma message: CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.' 101 | BOOST_PRAGMA_MESSAGE("CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:102:1: note: '#pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_NOEXCEPT' 102 | BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) | ^~~~~~~~~~~~~~~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o grid.o -c ../../../src/lib/grid.cpp g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o szv_grid.o -c ../../../src/lib/szv_grid.cpp In file included from /usr/include/boost/math/tools/cxx03_warn.hpp:9, from /usr/include/boost/math/quaternion.hpp:28, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/szv_grid.h:26, from ../../../src/lib/szv_grid.cpp:23: /usr/include/boost/math/tools/cxx03_warn.hpp:99:1: note: '#pragma message: CAUTION: One or more C++11 features were found to be unavailable' 99 | BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:100:1: note: '#pragma message: CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.' 100 | BOOST_PRAGMA_MESSAGE("CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:101:1: note: '#pragma message: CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.' 101 | BOOST_PRAGMA_MESSAGE("CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:102:1: note: '#pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_NOEXCEPT' 102 | BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) | ^~~~~~~~~~~~~~~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o manifold.o -c ../../../src/lib/manifold.cpp In file included from /usr/include/boost/math/tools/cxx03_warn.hpp:9, from /usr/include/boost/math/quaternion.hpp:28, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/ssd.h:26, from ../../../src/lib/manifold.h:28, from ../../../src/lib/manifold.cpp:23: /usr/include/boost/math/tools/cxx03_warn.hpp:99:1: note: '#pragma message: CAUTION: One or more C++11 features were found to be unavailable' 99 | BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:100:1: note: '#pragma message: CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.' 100 | BOOST_PRAGMA_MESSAGE("CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:101:1: note: '#pragma message: CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.' 101 | BOOST_PRAGMA_MESSAGE("CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:102:1: note: '#pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_NOEXCEPT' 102 | BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) | ^~~~~~~~~~~~~~~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o model.o -c ../../../src/lib/model.cpp In file included from /usr/include/boost/math/tools/cxx03_warn.hpp:9, from /usr/include/boost/math/quaternion.hpp:28, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/model.cpp:23: /usr/include/boost/math/tools/cxx03_warn.hpp:99:1: note: '#pragma message: CAUTION: One or more C++11 features were found to be unavailable' 99 | BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:100:1: note: '#pragma message: CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.' 100 | BOOST_PRAGMA_MESSAGE("CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:101:1: note: '#pragma message: CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.' 101 | BOOST_PRAGMA_MESSAGE("CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:102:1: note: '#pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_NOEXCEPT' 102 | BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) | ^~~~~~~~~~~~~~~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o monte_carlo.o -c ../../../src/lib/monte_carlo.cpp In file included from /usr/include/boost/math/tools/cxx03_warn.hpp:9, from /usr/include/boost/math/quaternion.hpp:28, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/ssd.h:26, from ../../../src/lib/monte_carlo.h:26, from ../../../src/lib/monte_carlo.cpp:23: /usr/include/boost/math/tools/cxx03_warn.hpp:99:1: note: '#pragma message: CAUTION: One or more C++11 features were found to be unavailable' 99 | BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:100:1: note: '#pragma message: CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.' 100 | BOOST_PRAGMA_MESSAGE("CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:101:1: note: '#pragma message: CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.' 101 | BOOST_PRAGMA_MESSAGE("CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:102:1: note: '#pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_NOEXCEPT' 102 | BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) | ^~~~~~~~~~~~~~~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o mutate.o -c ../../../src/lib/mutate.cpp In file included from /usr/include/boost/math/tools/cxx03_warn.hpp:9, from /usr/include/boost/math/quaternion.hpp:28, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/mutate.h:26, from ../../../src/lib/mutate.cpp:23: /usr/include/boost/math/tools/cxx03_warn.hpp:99:1: note: '#pragma message: CAUTION: One or more C++11 features were found to be unavailable' 99 | BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:100:1: note: '#pragma message: CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.' 100 | BOOST_PRAGMA_MESSAGE("CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:101:1: note: '#pragma message: CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.' 101 | BOOST_PRAGMA_MESSAGE("CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:102:1: note: '#pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_NOEXCEPT' 102 | BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) | ^~~~~~~~~~~~~~~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o my_pid.o -c ../../../src/lib/my_pid.cpp g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o naive_non_cache.o -c ../../../src/lib/naive_non_cache.cpp In file included from /usr/include/boost/math/tools/cxx03_warn.hpp:9, from /usr/include/boost/math/quaternion.hpp:28, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/naive_non_cache.h:27, from ../../../src/lib/naive_non_cache.cpp:23: /usr/include/boost/math/tools/cxx03_warn.hpp:99:1: note: '#pragma message: CAUTION: One or more C++11 features were found to be unavailable' 99 | BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:100:1: note: '#pragma message: CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.' 100 | BOOST_PRAGMA_MESSAGE("CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:101:1: note: '#pragma message: CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.' 101 | BOOST_PRAGMA_MESSAGE("CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:102:1: note: '#pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_NOEXCEPT' 102 | BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) | ^~~~~~~~~~~~~~~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o non_cache.o -c ../../../src/lib/non_cache.cpp In file included from /usr/include/boost/math/tools/cxx03_warn.hpp:9, from /usr/include/boost/math/quaternion.hpp:28, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/szv_grid.h:26, from ../../../src/lib/non_cache.h:27, from ../../../src/lib/non_cache.cpp:23: /usr/include/boost/math/tools/cxx03_warn.hpp:99:1: note: '#pragma message: CAUTION: One or more C++11 features were found to be unavailable' 99 | BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:100:1: note: '#pragma message: CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.' 100 | BOOST_PRAGMA_MESSAGE("CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:101:1: note: '#pragma message: CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.' 101 | BOOST_PRAGMA_MESSAGE("CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:102:1: note: '#pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_NOEXCEPT' 102 | BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) | ^~~~~~~~~~~~~~~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o parallel_mc.o -c ../../../src/lib/parallel_mc.cpp In file included from /usr/include/boost/smart_ptr/detail/sp_thread_sleep.hpp:22, from /usr/include/boost/smart_ptr/detail/yield_k.hpp:23, from /usr/include/boost/smart_ptr/detail/spinlock_gcc_atomic.hpp:14, from /usr/include/boost/smart_ptr/detail/spinlock.hpp:42, from /usr/include/boost/smart_ptr/detail/spinlock_pool.hpp:25, from /usr/include/boost/smart_ptr/shared_ptr.hpp:29, from /usr/include/boost/shared_ptr.hpp:17, from /usr/include/boost/date_time/time_clock.hpp:17, from /usr/include/boost/thread/thread_time.hpp:9, from /usr/include/boost/thread/lock_types.hpp:18, from /usr/include/boost/thread/pthread/thread_data.hpp:12, from /usr/include/boost/thread/thread_only.hpp:17, from /usr/include/boost/thread/thread.hpp:12, from ../../../src/lib/parallel.h:31, from ../../../src/lib/parallel_mc.cpp:23: /usr/include/boost/math/tools/cxx03_warn.hpp:99:1: note: '#pragma message: CAUTION: One or more C++11 features were found to be unavailable' 99 | BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:100:1: note: '#pragma message: CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.' 100 | BOOST_PRAGMA_MESSAGE("CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:101:1: note: '#pragma message: CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.' 101 | BOOST_PRAGMA_MESSAGE("CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:102:1: note: '#pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_NOEXCEPT' 102 | BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/progress.hpp:23:1: note: '#pragma message: This header is deprecated. Use the facilities in or instead.' 23 | BOOST_HEADER_DEPRECATED( "the facilities in or " ) | ^~~~~~~~~~~~~~~~~~~~~~~ /usr/include/boost/timer.hpp:21:1: note: '#pragma message: This header is deprecated. Use the facilities in instead.' 21 | BOOST_HEADER_DEPRECATED( "the facilities in " ) | ^~~~~~~~~~~~~~~~~~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o parse_pdbqt.o -c ../../../src/lib/parse_pdbqt.cpp In file included from /usr/include/boost/math/tools/cxx03_warn.hpp:9, from /usr/include/boost/math/quaternion.hpp:28, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/parse_pdbqt.h:26, from ../../../src/lib/parse_pdbqt.cpp:30: /usr/include/boost/math/tools/cxx03_warn.hpp:99:1: note: '#pragma message: CAUTION: One or more C++11 features were found to be unavailable' 99 | BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:100:1: note: '#pragma message: CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.' 100 | BOOST_PRAGMA_MESSAGE("CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:101:1: note: '#pragma message: CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.' 101 | BOOST_PRAGMA_MESSAGE("CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:102:1: note: '#pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_NOEXCEPT' 102 | BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) | ^~~~~~~~~~~~~~~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o pdb.o -c ../../../src/lib/pdb.cpp g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o quasi_newton.o -c ../../../src/lib/quasi_newton.cpp In file included from /usr/include/boost/math/tools/cxx03_warn.hpp:9, from /usr/include/boost/math/quaternion.hpp:28, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/quasi_newton.h:26, from ../../../src/lib/quasi_newton.cpp:23: /usr/include/boost/math/tools/cxx03_warn.hpp:99:1: note: '#pragma message: CAUTION: One or more C++11 features were found to be unavailable' 99 | BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:100:1: note: '#pragma message: CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.' 100 | BOOST_PRAGMA_MESSAGE("CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:101:1: note: '#pragma message: CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.' 101 | BOOST_PRAGMA_MESSAGE("CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:102:1: note: '#pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_NOEXCEPT' 102 | BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) | ^~~~~~~~~~~~~~~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o quaternion.o -c ../../../src/lib/quaternion.cpp In file included from /usr/include/boost/math/tools/cxx03_warn.hpp:9, from /usr/include/boost/math/quaternion.hpp:28, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/quaternion.cpp:23: /usr/include/boost/math/tools/cxx03_warn.hpp:99:1: note: '#pragma message: CAUTION: One or more C++11 features were found to be unavailable' 99 | BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:100:1: note: '#pragma message: CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.' 100 | BOOST_PRAGMA_MESSAGE("CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:101:1: note: '#pragma message: CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.' 101 | BOOST_PRAGMA_MESSAGE("CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:102:1: note: '#pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_NOEXCEPT' 102 | BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) | ^~~~~~~~~~~~~~~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o random.o -c ../../../src/lib/random.cpp g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o ssd.o -c ../../../src/lib/ssd.cpp In file included from /usr/include/boost/math/tools/cxx03_warn.hpp:9, from /usr/include/boost/math/quaternion.hpp:28, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/ssd.h:26, from ../../../src/lib/ssd.cpp:23: /usr/include/boost/math/tools/cxx03_warn.hpp:99:1: note: '#pragma message: CAUTION: One or more C++11 features were found to be unavailable' 99 | BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:100:1: note: '#pragma message: CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.' 100 | BOOST_PRAGMA_MESSAGE("CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:101:1: note: '#pragma message: CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.' 101 | BOOST_PRAGMA_MESSAGE("CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:102:1: note: '#pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_NOEXCEPT' 102 | BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) | ^~~~~~~~~~~~~~~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o terms.o -c ../../../src/lib/terms.cpp In file included from /usr/include/boost/math/tools/cxx03_warn.hpp:9, from /usr/include/boost/math/quaternion.hpp:28, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/terms.h:27, from ../../../src/lib/terms.cpp:23: /usr/include/boost/math/tools/cxx03_warn.hpp:99:1: note: '#pragma message: CAUTION: One or more C++11 features were found to be unavailable' 99 | BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:100:1: note: '#pragma message: CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.' 100 | BOOST_PRAGMA_MESSAGE("CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:101:1: note: '#pragma message: CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.' 101 | BOOST_PRAGMA_MESSAGE("CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:102:1: note: '#pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_NOEXCEPT' 102 | BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) | ^~~~~~~~~~~~~~~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -o weighted_terms.o -c ../../../src/lib/weighted_terms.cpp In file included from /usr/include/boost/math/tools/cxx03_warn.hpp:9, from /usr/include/boost/math/quaternion.hpp:28, from ../../../src/lib/quaternion.h:26, from ../../../src/lib/conf.h:28, from ../../../src/lib/tree.h:26, from ../../../src/lib/model.h:29, from ../../../src/lib/terms.h:27, from ../../../src/lib/weighted_terms.h:26, from ../../../src/lib/weighted_terms.cpp:23: /usr/include/boost/math/tools/cxx03_warn.hpp:99:1: note: '#pragma message: CAUTION: One or more C++11 features were found to be unavailable' 99 | BOOST_PRAGMA_MESSAGE("CAUTION: One or more C++11 features were found to be unavailable") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:100:1: note: '#pragma message: CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.' 100 | BOOST_PRAGMA_MESSAGE("CAUTION: Compiling Boost.Math in pre-C++11 conformance modes is now deprecated and will be removed from March 2021.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:101:1: note: '#pragma message: CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.' 101 | BOOST_PRAGMA_MESSAGE("CAUTION: Define BOOST_MATH_DISABLE_DEPRECATED_03_WARNING to suppress this message.") | ^~~~~~~~~~~~~~~~~~~~ /usr/include/boost/math/tools/cxx03_warn.hpp:102:1: note: '#pragma message: CAUTION: This message was generated due to the define: BOOST_NO_CXX11_NOEXCEPT' 102 | BOOST_PRAGMA_MESSAGE("CAUTION: This message was generated due to the define: " BOOST_MATH_CXX03_WARN_REASON) | ^~~~~~~~~~~~~~~~~~~~ g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -Wl,-z,relro -Wl,-z,now --lto -g -o vina main.o cache.o coords.o current_weights.o everything.o grid.o szv_grid.o manifold.o model.o monte_carlo.o mutate.o my_pid.o naive_non_cache.o non_cache.o parallel_mc.o parse_pdbqt.o pdb.o quasi_newton.o quaternion.o random.o ssd.o terms.o weighted_terms.o -l boost_system -l boost_thread -l boost_program_options -lboost_filesystem g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -g -O2 -fdebug-prefix-map=/build/autodock-vina-1.1.2=. -fstack-protector-strong -Wformat -Werror=format-security -fpermissive -DBOOST_FILESYSTEM_VERSION=3 --lto -I ../../../src/lib -o split.o -c ../../../src/split/split.cpp g++ -pthread -ansi -Wno-long-long -O3 -DNDEBUG -I /usr/include -Wl,-z,relro -Wl,-z,now --lto -g -o vina_split split.o -l boost_system -l boost_thread -l boost_program_options -lboost_filesystem make[2]: Leaving directory '/build/autodock-vina-1.1.2/build/linux/release' make[1]: Leaving directory '/build/autodock-vina-1.1.2' create-stamp debian/debhelper-build-stamp dh_prep dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/autodock-vina/usr/bin/vina_split contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin dpkg-shlibdeps: warning: debian/autodock-vina/usr/bin/vina contains an unresolvable reference to symbol __aeabi_atexit@GLIBC_2.4: it's probably a plugin dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'autodock-vina-dbgsym' in '../autodock-vina-dbgsym_1.1.2-6_armhf.deb'. dpkg-deb: building package 'autodock-vina' in '../autodock-vina_1.1.2-6_armhf.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../autodock-vina_1.1.2-6_armhf.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/31668 and its subdirectories I: Current time: Mon Aug 16 02:03:23 -12 2021 I: pbuilder-time-stamp: 1629122603 Mon Aug 16 14:03:46 UTC 2021 I: 1st build successful. Starting 2nd build on remote node virt64b-armhf-rb.debian.net. Mon Aug 16 14:03:46 UTC 2021 I: Preparing to do remote build '2' on virt64b-armhf-rb.debian.net. Mon Aug 16 14:10:54 UTC 2021 I: Deleting $TMPDIR on virt64b-armhf-rb.debian.net. Mon Aug 16 14:10:56 UTC 2021 I: autodock-vina_1.1.2-6_armhf.changes: Format: 1.8 Date: Sun, 08 Nov 2020 08:50:42 +0100 Source: autodock-vina Binary: autodock-vina autodock-vina-dbgsym Architecture: armhf Version: 1.1.2-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: autodock-vina - docking of small molecules to proteins Changes: autodock-vina (1.1.2-6) unstable; urgency=medium . [ Jelmer Vernooij ] * Use versioned copyright format URI. . [ Andreas Tille ] * Standards-Version: 4.5.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * No tab in license text (routine-update) * Remove obsolete field Name from debian/upstream/metadata (already present in machine-readable debian/copyright). Checksums-Sha1: e428ed622aa01a79696f7feb03f9741a785c05c1 2263692 autodock-vina-dbgsym_1.1.2-6_armhf.deb 0f7eea1e53de9eae55d84cd9b33d671ac425f954 10941 autodock-vina_1.1.2-6_armhf.buildinfo 6c6518aa2b31fc1666ff950230fc4344dcd007ec 208624 autodock-vina_1.1.2-6_armhf.deb Checksums-Sha256: 35e08472ac210bf8b1f6287813a847658bda1dd0844970c41500491c8ff319db 2263692 autodock-vina-dbgsym_1.1.2-6_armhf.deb d36d81a935d7964d48a0b79d82c68766b33ef3e1527a30ab6a176b5014c5f582 10941 autodock-vina_1.1.2-6_armhf.buildinfo 74ed752a2fcb972aea24ea39d62382c70825f3aeaa1b7bbcd4d879bd06319582 208624 autodock-vina_1.1.2-6_armhf.deb Files: 5d2270f13a1e54df007bd5e83df1593c 2263692 debug optional autodock-vina-dbgsym_1.1.2-6_armhf.deb 443527a23b4dca6a8f09e06739deab1c 10941 science optional autodock-vina_1.1.2-6_armhf.buildinfo dc15ad721413e719ec11b94fc6d52602 208624 science optional autodock-vina_1.1.2-6_armhf.deb Mon Aug 16 14:10:58 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.ekXvc8xUWr/autodock-vina_1.1.2-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.ekXvc8xUWr/autodock-vina_1.1.2-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.ekXvc8xUWr/autodock-vina_1.1.2-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.ekXvc8xUWr/b1/autodock-vina_1.1.2-6_armhf.changes /srv/reproducible-results/rbuild-debian/tmp.ekXvc8xUWr/b2/autodock-vina_1.1.2-6_armhf.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.898s) 0.898s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.095s) 0.095s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Mon Aug 16 14:11:00 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Mon Aug 16 14:11:00 UTC 2021 I: autodock-vina from bullseye built successfully and reproducibly on armhf. Mon Aug 16 14:11:01 UTC 2021 I: Submitting .buildinfo files to external archives: Mon Aug 16 14:11:01 UTC 2021 I: Submitting 12K b1/autodock-vina_1.1.2-6_armhf.buildinfo.asc Mon Aug 16 14:11:03 UTC 2021 I: Submitting 12K b2/autodock-vina_1.1.2-6_armhf.buildinfo.asc Mon Aug 16 14:11:04 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Aug 16 14:11:04 UTC 2021 I: Done submitting .buildinfo files. Mon Aug 16 14:11:04 UTC 2021 I: Removing signed autodock-vina_1.1.2-6_armhf.buildinfo.asc files: removed './b1/autodock-vina_1.1.2-6_armhf.buildinfo.asc' removed './b2/autodock-vina_1.1.2-6_armhf.buildinfo.asc'