Thu Jul 22 09:20:33 UTC 2021 I: starting to build svim/bullseye/arm64 on jenkins on '2021-07-22 09:20' Thu Jul 22 09:20:33 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_15/43677/console.log Thu Jul 22 09:20:33 UTC 2021 I: Downloading source for bullseye/svim=1.4.2+ds-1 --2021-07-22 09:20:33-- http://cdn-fastly.deb.debian.org/debian/pool/main/s/svim/svim_1.4.2+ds-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2037 (2.0K) Saving to: ‘svim_1.4.2+ds-1.dsc’ 0K . 100% 228M=0s 2021-07-22 09:20:33 (228 MB/s) - ‘svim_1.4.2+ds-1.dsc’ saved [2037/2037] Thu Jul 22 09:20:33 UTC 2021 I: svim_1.4.2+ds-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: svim Binary: svim Architecture: all Version: 1.4.2+ds-1 Maintainer: Debian Med Packaging Team Uploaders: Nilesh Patra Homepage: https://github.com/eldariont/svim Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/svim Vcs-Git: https://salsa.debian.org/med-team/svim.git Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-numpy, python3-pysam, python3-matplotlib, python3-scipy, samtools Package-List: svim deb science optional arch=all Checksums-Sha1: 09386e48747e3fb8a30f81e5bc03490bc9b403c0 213600 svim_1.4.2+ds.orig.tar.xz feb56fd9b5465f861fd1ce870081ffbc80bccb85 9044 svim_1.4.2+ds-1.debian.tar.xz Checksums-Sha256: 7969070d9aba752f5bb295176ec3ba6a6ae4006a80e3e218bda95a228a2be8e7 213600 svim_1.4.2+ds.orig.tar.xz f0936a0eb3ff89a3dd4adecb66d9da7a62296fa09e303e3bc3cf37cc1e38ddac 9044 svim_1.4.2+ds-1.debian.tar.xz Files: e6c53464107fc251d35475c1657524bf 213600 svim_1.4.2+ds.orig.tar.xz 0ea1a6ea7aa78cd40e53e7a987b8212e 9044 svim_1.4.2+ds-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl+QAyIUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafEEkw/+MjRyWa8IkA+S3SWJ96VO8Ou33goc ToH3w2wlIaGCq6nOoCxZ77Nbu2PITAzdZguEr1ZY3aekVmKvia7DtNDrvK3iy3M/ jy1nui07MMnTLJJRjsjQwMvWwrJjleScoCTzIuxMpE8nIlfTk7qUMAV/rDAfYJZc 5XQ7BTRoJg22HJ0JCnaSTWFTsWHceNMhppszwvfwCTo70X9J+4eJOu2l/C20daZ2 Nzm8rmmkqJlNBqMSkRSv1s0QCf8V4PvNcbZpUyqXVYuroAQWSU9WhePwG7ZWGb3v dWj3yMqtR5of0p1iVuIV4gF43InaHtfRoxn7cNxcQEO4tVwgcZFZjO3J9RaCesnt +b1ANZkgu6F72YAg72cw5+fcS0tV0kNxkkQIWcn0ofRAGVs2Jw2dEqa56x2H81Hi Lo36z6wVo7Pwa77YSfkG73mSVY1jiuhemOLLKKkL4T4/ypHaO1wSnqQyvzQ1yXH8 pnxxquOJ9JgyX+xXQzr8I1dK3tnfeSoNtl8hhSdUIy7McP0iRN4rowpDKHgjsujE DxFv3jjEdmUvHHH41j256TAvRgaLNP10KkNgntNn+p+zGHEmwoplIou6i+HrWa3F 1UnILiBuX4P4nXjf/2+LA/OlY8QkAiUK1/mH7K2D0b4E6K8Z/qFt/ubccpcpiZc3 3GMytBAfMNETevI= =5bg2 -----END PGP SIGNATURE----- Thu Jul 22 09:20:33 UTC 2021 I: Checking whether the package is not for us Thu Jul 22 09:20:33 UTC 2021 I: Starting 1st build on remote node codethink12-arm64.debian.net. Thu Jul 22 09:20:33 UTC 2021 I: Preparing to do remote build '1' on codethink12-arm64.debian.net. Thu Jul 22 09:22:14 UTC 2021 I: Deleting $TMPDIR on codethink12-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jul 21 21:20:36 -12 2021 I: pbuilder-time-stamp: 1626945636 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [svim_1.4.2+ds-1.dsc] I: copying [./svim_1.4.2+ds.orig.tar.xz] I: copying [./svim_1.4.2+ds-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.znAkqEzT/trustedkeys.kbx': General error gpgv: Signature made Tue Oct 20 21:45:06 2020 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./svim_1.4.2+ds-1.dsc dpkg-source: info: extracting svim in svim-1.4.2+ds dpkg-source: info: unpacking svim_1.4.2+ds.orig.tar.xz dpkg-source: info: unpacking svim_1.4.2+ds-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4467/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4467' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.s60qMUCFEK/pbuilderrc_hJiH --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.s60qMUCFEK/b1 --logfile b1/build.log svim_1.4.2+ds-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink12-arm64 4.15.0-151-generic #157-Ubuntu SMP Fri Jul 9 21:03:48 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Jun 21 14:26 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Feb 7 02:38 more -rwsr-xr-x 1 root root 51360 Feb 7 02:38 mount -rwxr-xr-x 1 root root 14496 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 20 21:25 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Feb 7 02:38 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 21:55 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30880 Feb 7 02:38 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/4467/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, python3-numpy, python3-pysam, python3-matplotlib, python3-scipy, samtools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-numpy; however: Package python3-numpy is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on python3-matplotlib; however: Package python3-matplotlib is not installed. pbuilder-satisfydepends-dummy depends on python3-scipy; however: Package python3-scipy is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcurl3-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libgfortran5{a} libhts3{a} libicu67{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmpdec3{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} m4{a} mailcap{a} man-db{a} media-types{a} mime-support{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-distutils{a} python3-kiwisolver{a} python3-lib2to3{a} python3-matplotlib{a} python3-minimal{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-pyparsing{a} python3-pysam{a} python3-scipy{a} python3-setuptools{a} python3-six{a} python3.9{a} python3.9-minimal{a} readline-common{a} samtools{a} sensible-utils{a} ttf-bitstream-vera{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-olefile python3-tk wget 0 packages upgraded, 99 newly installed, 0 to remove and 0 not upgraded. Need to get 56.7 MB of archives. After unpacking 209 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-minimal arm64 3.9.2-1 [797 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 python3.9-minimal arm64 3.9.2-1 [1884 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 python3-minimal arm64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 mailcap all 3.69 [31.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 mime-support all 3.66 [10.9 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 libmpdec3 arm64 2.5.1-1 [84.4 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 readline-common all 8.1-1 [73.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 libreadline8 arm64 8.1-1 [160 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-stdlib arm64 3.9.2-1 [1658 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 python3.9 arm64 3.9.2-1 [466 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 libpython3-stdlib arm64 3.9.2-3 [21.4 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 python3 arm64 3.9.2-3 [37.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 python3-distutils all 3.9.2-1 [143 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 fonts-lyx all 2.3.6-1 [205 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 libblas3 arm64 3.9.0-3 [101 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 libmd0 arm64 1.0.3-3 [27.9 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libbsd0 arm64 0.11.3-1 [106 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1 [69.3 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1 [105 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-3 [222 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 libssh2-1 arm64 1.9.0-2 [150 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 libcurl3-gnutls arm64 7.74.0-1.3+b1 [318 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 libdeflate0 arm64 1.7-1 [47.7 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 libpng16-16 arm64 1.6.37-3 [289 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 libfreetype6 arm64 2.10.4+dfsg-1 [393 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 libgfortran5 arm64 10.2.1-6 [333 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 libhts3 arm64 1.11-4 [346 kB] Get: 67 http://deb.debian.org/debian bullseye/main arm64 libimagequant0 arm64 2.12.2-1.1 [30.3 kB] Get: 68 http://deb.debian.org/debian bullseye/main arm64 libjbig0 arm64 2.1-3.1+b2 [27.8 kB] Get: 69 http://deb.debian.org/debian bullseye/main arm64 libjpeg62-turbo arm64 1:2.0.6-4 [133 kB] Get: 70 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 71 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB] Get: 72 http://deb.debian.org/debian bullseye/main arm64 liblapack3 arm64 3.9.0-3 [1541 kB] Get: 73 http://deb.debian.org/debian bullseye/main arm64 liblbfgsb0 arm64 3.0+dfsg.3-9 [24.5 kB] Get: 74 http://deb.debian.org/debian bullseye/main arm64 liblcms2-2 arm64 2.12~rc1-2 [140 kB] Get: 75 http://deb.debian.org/debian bullseye/main arm64 libncurses6 arm64 6.2+20201114-2 [93.2 kB] Get: 76 http://deb.debian.org/debian bullseye/main arm64 libwebp6 arm64 0.6.1-2.1 [244 kB] Get: 77 http://deb.debian.org/debian bullseye/main arm64 libtiff5 arm64 4.2.0-1 [276 kB] Get: 78 http://deb.debian.org/debian bullseye/main arm64 libwebpdemux2 arm64 0.6.1-2.1 [87.5 kB] Get: 79 http://deb.debian.org/debian bullseye/main arm64 libwebpmux3 arm64 0.6.1-2.1 [96.7 kB] Get: 80 http://deb.debian.org/debian bullseye/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 81 http://deb.debian.org/debian bullseye/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 82 http://deb.debian.org/debian bullseye/main arm64 libxcb1 arm64 1.14-3 [138 kB] Get: 83 http://deb.debian.org/debian bullseye/main arm64 ttf-bitstream-vera all 1.10-8.1 [223 kB] Get: 84 http://deb.debian.org/debian bullseye/main arm64 python-matplotlib-data all 3.3.4-1 [4153 kB] Get: 85 http://deb.debian.org/debian bullseye/main arm64 python3-all arm64 3.9.2-3 [1056 B] Get: 86 http://deb.debian.org/debian bullseye/main arm64 python3-six all 1.16.0-1 [17.1 kB] Get: 87 http://deb.debian.org/debian bullseye/main arm64 python3-cycler all 0.10.0-3 [8084 B] Get: 88 http://deb.debian.org/debian bullseye/main arm64 python3-dateutil all 2.8.1-5 [81.7 kB] Get: 89 http://deb.debian.org/debian bullseye/main arm64 python3-decorator all 4.4.2-2 [15.8 kB] Get: 90 http://deb.debian.org/debian bullseye/main arm64 python3-kiwisolver arm64 1.3.1-1+b1 [51.6 kB] Get: 91 http://deb.debian.org/debian bullseye/main arm64 python3-pyparsing all 2.4.7-1 [109 kB] Get: 92 http://deb.debian.org/debian bullseye/main arm64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 93 http://deb.debian.org/debian bullseye/main arm64 python3-numpy arm64 1:1.19.5-1 [3196 kB] Get: 94 http://deb.debian.org/debian bullseye/main arm64 python3-pil arm64 8.1.2+dfsg-0.2 [428 kB] Get: 95 http://deb.debian.org/debian bullseye/main arm64 python3-matplotlib arm64 3.3.4-1 [4109 kB] Get: 96 http://deb.debian.org/debian bullseye/main arm64 python3-pysam arm64 0.15.4+ds-3+b2 [1386 kB] Get: 97 http://deb.debian.org/debian bullseye/main arm64 python3-scipy arm64 1.6.0-2 [11.6 MB] Get: 98 http://deb.debian.org/debian bullseye/main arm64 python3-setuptools all 52.0.0-4 [366 kB] Get: 99 http://deb.debian.org/debian bullseye/main arm64 samtools arm64 1.11-1 [526 kB] Fetched 56.7 MB in 2s (29.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-7_arm64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../1-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../3-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:arm64. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_arm64.deb ... Unpacking libpython3.9-minimal:arm64 (3.9.2-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../6-libexpat1_2.2.10-2_arm64.deb ... Unpacking libexpat1:arm64 (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_arm64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:arm64 (3.9.2-1) ... Setting up libexpat1:arm64 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20513 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_arm64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. Preparing to unpack .../2-mailcap_3.69_all.deb ... Unpacking mailcap (3.69) ... Selecting previously unselected package mime-support. Preparing to unpack .../3-mime-support_3.66_all.deb ... Unpacking mime-support (3.66) ... Selecting previously unselected package libmpdec3:arm64. Preparing to unpack .../4-libmpdec3_2.5.1-1_arm64.deb ... Unpacking libmpdec3:arm64 (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../6-libreadline8_8.1-1_arm64.deb ... Unpacking libreadline8:arm64 (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:arm64. Preparing to unpack .../7-libpython3.9-stdlib_3.9.2-1_arm64.deb ... Unpacking libpython3.9-stdlib:arm64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../8-python3.9_3.9.2-1_arm64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.9.2-3_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20958 files and directories currently installed.) Preparing to unpack .../00-python3_3.9.2-3_arm64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../03-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../06-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../07-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../08-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../09-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../10-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../11-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../12-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../13-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../14-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../15-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../16-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../17-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../18-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../19-libelf1_0.183-1_arm64.deb ... Unpacking libelf1:arm64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../20-dwz_0.13+20210201-1_arm64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:arm64. Preparing to unpack .../21-libicu67_67.1-7_arm64.deb ... Unpacking libicu67:arm64 (67.1-7) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../22-libxml2_2.9.10+dfsg-6.7_arm64.deb ... Unpacking libxml2:arm64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../23-gettext_0.21-4_arm64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../24-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../25-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../26-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../27-python3-lib2to3_3.9.2-1_all.deb ... Unpacking python3-lib2to3 (3.9.2-1) ... Selecting previously unselected package python3-distutils. Preparing to unpack .../28-python3-distutils_3.9.2-1_all.deb ... Unpacking python3-distutils (3.9.2-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../29-dh-python_4.20201102+nmu1_all.deb ... Unpacking dh-python (4.20201102+nmu1) ... Selecting previously unselected package fonts-lyx. Preparing to unpack .../30-fonts-lyx_2.3.6-1_all.deb ... Unpacking fonts-lyx (2.3.6-1) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../31-libblas3_3.9.0-3_arm64.deb ... Unpacking libblas3:arm64 (3.9.0-3) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../32-libbrotli1_1.0.9-2+b2_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b2) ... Selecting previously unselected package libmd0:arm64. Preparing to unpack .../33-libmd0_1.0.3-3_arm64.deb ... Unpacking libmd0:arm64 (1.0.3-3) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../34-libbsd0_0.11.3-1_arm64.deb ... Unpacking libbsd0:arm64 (0.11.3-1) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../35-libsasl2-modules-db_2.1.27+dfsg-2.1_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../36-libsasl2-2_2.1.27+dfsg-2.1_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:arm64. Preparing to unpack .../37-libldap-2.4-2_2.4.57+dfsg-3_arm64.deb ... Unpacking libldap-2.4-2:arm64 (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../38-libnghttp2-14_1.43.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.43.0-1) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../39-libpsl5_0.21.0-1.2_arm64.deb ... Unpacking libpsl5:arm64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../40-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:arm64. Preparing to unpack .../41-libssh2-1_1.9.0-2_arm64.deb ... Unpacking libssh2-1:arm64 (1.9.0-2) ... Selecting previously unselected package libcurl3-gnutls:arm64. Preparing to unpack .../42-libcurl3-gnutls_7.74.0-1.3+b1_arm64.deb ... Unpacking libcurl3-gnutls:arm64 (7.74.0-1.3+b1) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../43-libdeflate0_1.7-1_arm64.deb ... Unpacking libdeflate0:arm64 (1.7-1) ... Selecting previously unselected package libpng16-16:arm64. Preparing to unpack .../44-libpng16-16_1.6.37-3_arm64.deb ... Unpacking libpng16-16:arm64 (1.6.37-3) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../45-libfreetype6_2.10.4+dfsg-1_arm64.deb ... Unpacking libfreetype6:arm64 (2.10.4+dfsg-1) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../46-libgfortran5_10.2.1-6_arm64.deb ... Unpacking libgfortran5:arm64 (10.2.1-6) ... Selecting previously unselected package libhts3:arm64. Preparing to unpack .../47-libhts3_1.11-4_arm64.deb ... Unpacking libhts3:arm64 (1.11-4) ... Selecting previously unselected package libimagequant0:arm64. Preparing to unpack .../48-libimagequant0_2.12.2-1.1_arm64.deb ... Unpacking libimagequant0:arm64 (2.12.2-1.1) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../49-libjbig0_2.1-3.1+b2_arm64.deb ... Unpacking libjbig0:arm64 (2.1-3.1+b2) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../50-libjpeg62-turbo_1%3a2.0.6-4_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.0.6-4) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../51-libjs-jquery_3.5.1+dfsg+~3.5.5-7_all.deb ... Unpacking libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Selecting previously unselected package libjs-jquery-ui. Preparing to unpack .../52-libjs-jquery-ui_1.12.1+dfsg-8_all.deb ... Unpacking libjs-jquery-ui (1.12.1+dfsg-8) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../53-liblapack3_3.9.0-3_arm64.deb ... Unpacking liblapack3:arm64 (3.9.0-3) ... Selecting previously unselected package liblbfgsb0:arm64. Preparing to unpack .../54-liblbfgsb0_3.0+dfsg.3-9_arm64.deb ... Unpacking liblbfgsb0:arm64 (3.0+dfsg.3-9) ... Selecting previously unselected package liblcms2-2:arm64. Preparing to unpack .../55-liblcms2-2_2.12~rc1-2_arm64.deb ... Unpacking liblcms2-2:arm64 (2.12~rc1-2) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../56-libncurses6_6.2+20201114-2_arm64.deb ... Unpacking libncurses6:arm64 (6.2+20201114-2) ... Selecting previously unselected package libwebp6:arm64. Preparing to unpack .../57-libwebp6_0.6.1-2.1_arm64.deb ... Unpacking libwebp6:arm64 (0.6.1-2.1) ... Selecting previously unselected package libtiff5:arm64. Preparing to unpack .../58-libtiff5_4.2.0-1_arm64.deb ... Unpacking libtiff5:arm64 (4.2.0-1) ... Selecting previously unselected package libwebpdemux2:arm64. Preparing to unpack .../59-libwebpdemux2_0.6.1-2.1_arm64.deb ... Unpacking libwebpdemux2:arm64 (0.6.1-2.1) ... Selecting previously unselected package libwebpmux3:arm64. Preparing to unpack .../60-libwebpmux3_0.6.1-2.1_arm64.deb ... Unpacking libwebpmux3:arm64 (0.6.1-2.1) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../61-libxau6_1%3a1.0.9-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.9-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../62-libxdmcp6_1%3a1.1.2-3_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../63-libxcb1_1.14-3_arm64.deb ... Unpacking libxcb1:arm64 (1.14-3) ... Selecting previously unselected package ttf-bitstream-vera. Preparing to unpack .../64-ttf-bitstream-vera_1.10-8.1_all.deb ... Unpacking ttf-bitstream-vera (1.10-8.1) ... Selecting previously unselected package python-matplotlib-data. Preparing to unpack .../65-python-matplotlib-data_3.3.4-1_all.deb ... Unpacking python-matplotlib-data (3.3.4-1) ... Selecting previously unselected package python3-all. Preparing to unpack .../66-python3-all_3.9.2-3_arm64.deb ... Unpacking python3-all (3.9.2-3) ... Selecting previously unselected package python3-six. Preparing to unpack .../67-python3-six_1.16.0-1_all.deb ... Unpacking python3-six (1.16.0-1) ... Selecting previously unselected package python3-cycler. Preparing to unpack .../68-python3-cycler_0.10.0-3_all.deb ... Unpacking python3-cycler (0.10.0-3) ... Selecting previously unselected package python3-dateutil. Preparing to unpack .../69-python3-dateutil_2.8.1-5_all.deb ... Unpacking python3-dateutil (2.8.1-5) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../70-python3-decorator_4.4.2-2_all.deb ... Unpacking python3-decorator (4.4.2-2) ... Selecting previously unselected package python3-kiwisolver. Preparing to unpack .../71-python3-kiwisolver_1.3.1-1+b1_arm64.deb ... Unpacking python3-kiwisolver (1.3.1-1+b1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../72-python3-pyparsing_2.4.7-1_all.deb ... Unpacking python3-pyparsing (2.4.7-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../73-python3-pkg-resources_52.0.0-4_all.deb ... Unpacking python3-pkg-resources (52.0.0-4) ... Selecting previously unselected package python3-numpy. Preparing to unpack .../74-python3-numpy_1%3a1.19.5-1_arm64.deb ... Unpacking python3-numpy (1:1.19.5-1) ... Selecting previously unselected package python3-pil:arm64. Preparing to unpack .../75-python3-pil_8.1.2+dfsg-0.2_arm64.deb ... Unpacking python3-pil:arm64 (8.1.2+dfsg-0.2) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../76-python3-matplotlib_3.3.4-1_arm64.deb ... Unpacking python3-matplotlib (3.3.4-1) ... Selecting previously unselected package python3-pysam. Preparing to unpack .../77-python3-pysam_0.15.4+ds-3+b2_arm64.deb ... Unpacking python3-pysam (0.15.4+ds-3+b2) ... Selecting previously unselected package python3-scipy. Preparing to unpack .../78-python3-scipy_1.6.0-2_arm64.deb ... Unpacking python3-scipy (1.6.0-2) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../79-python3-setuptools_52.0.0-4_all.deb ... Unpacking python3-setuptools (52.0.0-4) ... Selecting previously unselected package samtools. Preparing to unpack .../80-samtools_1.11-1_arm64.deb ... Unpacking samtools (1.11-1) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:arm64 (1.5.3-1) ... Setting up liblcms2-2:arm64 (2.12~rc1-2) ... Setting up libxau6:arm64 (1:1.0.9-1) ... Setting up libpsl5:arm64 (0.21.0-1.2) ... Setting up ttf-bitstream-vera (1.10-8.1) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up fonts-lyx (2.3.6-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b2) ... Setting up libnghttp2-14:arm64 (1.43.0-1) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up libdeflate0:arm64 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libjbig0:arm64 (2.1-3.1+b2) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libjpeg62-turbo:arm64 (1:2.0.6-4) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:arm64 (6.2+20201114-2) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up libimagequant0:arm64 (2.12.2-1.1) ... Setting up libpng16-16:arm64 (1.6.37-3) ... Setting up autopoint (0.21-4) ... Setting up libwebp6:arm64 (0.6.1-2.1) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-2.1) ... Setting up libgfortran5:arm64 (10.2.1-6) ... Setting up libmd0:arm64 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libmpdec3:arm64 (2.5.1-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:arm64 (1.9.0-2) ... Setting up libtiff5:arm64 (4.2.0-1) ... Setting up libjs-jquery (3.5.1+dfsg+~3.5.5-7) ... Setting up python-matplotlib-data (3.3.4-1) ... Setting up libwebpmux3:arm64 (0.6.1-2.1) ... Setting up libbsd0:arm64 (0.11.3-1) ... Setting up mailcap (3.69) ... Setting up libelf1:arm64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up liblapack3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.6-15) ... Setting up libwebpdemux2:arm64 (0.6.1-2.1) ... Setting up libreadline8:arm64 (8.1-1) ... Setting up libldap-2.4-2:arm64 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up libcurl3-gnutls:arm64 (7.74.0-1.3+b1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libjs-jquery-ui (1.12.1+dfsg-8) ... Setting up libfreetype6:arm64 (2.10.4+dfsg-1) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libpython3.9-stdlib:arm64 (3.9.2-1) ... Setting up libpython3-stdlib:arm64 (3.9.2-3) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.3-9) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libhts3:arm64 (1.11-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up samtools (1.11-1) ... Setting up dh-autoreconf (20) ... Setting up python3.9 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up python3-six (1.16.0-1) ... Setting up python3-pil:arm64 (8.1.2+dfsg-0.2) ... Setting up python3-decorator (4.4.2-2) ... Setting up python3-pyparsing (2.4.7-1) ... Setting up python3-cycler (0.10.0-3) ... Setting up python3-kiwisolver (1.3.1-1+b1) ... Setting up python3-dateutil (2.8.1-5) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-pysam (0.15.4+ds-3+b2) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-all (3.9.2-3) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-matplotlib (3.3.4-1) ... Setting up python3-scipy (1.6.0-2) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/svim-1.4.2+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../svim_1.4.2+ds-1_source.changes dpkg-buildpackage: info: source package svim dpkg-buildpackage: info: source version 1.4.2+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/tests copying src/tests/test_satag.py -> /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/tests copying src/tests/test_intra.py -> /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/tests copying src/tests/test_inter.py -> /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/tests copying src/tests/test_input_parsing.py -> /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/tests copying src/tests/test_clustering.py -> /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/tests copying src/tests/test_Signature.py -> /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/tests copying src/tests/test_Combine.py -> /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/tests copying src/tests/test_Collect.py -> /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/tests copying src/tests/__init__.py -> /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/tests creating /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim copying src/svim/__init__.py -> /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim copying src/svim/SVSignature.py -> /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim copying src/svim/SVIM_plot.py -> /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim copying src/svim/SVIM_merging.py -> /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim copying src/svim/SVIM_intra.py -> /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim copying src/svim/SVIM_inter.py -> /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim copying src/svim/SVIM_input_parsing.py -> /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim copying src/svim/SVIM_genotyping.py -> /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim copying src/svim/SVIM_clustering.py -> /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim copying src/svim/SVIM_alignment.py -> /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim copying src/svim/SVIM_COMBINE.py -> /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim copying src/svim/SVIM_COLLECT.py -> /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim copying src/svim/SVIM_CLUSTER.py -> /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim copying src/svim/SVCandidate.py -> /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim running build_scripts creating build creating build/scripts-3.9 copying and adjusting src/svim/svim -> build/scripts-3.9 changing mode of build/scripts-3.9/svim from 644 to 755 debian/rules override_dh_auto_test make[1]: Entering directory '/build/svim-1.4.2+ds' cat debian/missing-sources/chimeric_read.sam| samtools view -Sb - > src/tests/chimeric_read.bam samtools index src/tests/chimeric_read.bam src/tests/chimeric_read.bam.bai cat src/tests/chimeric_read_errors.sam| samtools view -Sb - > src/tests/chimeric_read_errors.bam samtools index src/tests/chimeric_read_errors.bam src/tests/chimeric_read_errors.bam.bai dh_auto_test -- --system=custom --test-args="PYTHONPATH={build_dir} {interpreter} -m unittest discover -v src/tests" I: pybuild base:232: PYTHONPATH=/build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build python3.9 -m unittest discover -v src/tests test_analyze_alignment_file_querysorted (test_Collect.TestCollect) ... ok test_bam_iterator (test_Collect.TestCollect) ... ok test_retrieve_primary_alignment_from_supplementary (test_Collect.TestCollect) ... ok test_retrieve_supplementary_alignment_from_primary (test_Collect.TestCollect) ... ok test_combine (test_Combine.TestSVIMClustering) ... ok test_accessors (test_Signature.TestSVSignature) ... ok test_as_string (test_Signature.TestSVSignature) ... ok test_downstream_distance_to (test_Signature.TestSVSignature) ... ok test_clustering (test_clustering.TestSVIMClustering) ... ok test_scores (test_clustering.TestSVIMClustering) ... ok test_guess_file_type (test_input_parsing.TestInputParsing) ... ok test_parse_arguments (test_input_parsing.TestInputParsing) ... ok test_is_similar (test_inter.TestSVIMInter) ... ok test_analyze_cigar_indel (test_intra.TestSVIMIntra) ... ok test_fetch (test_satag.TestSAExtraction) ... ok test_satag_extraction_complete (test_satag.TestSAExtraction) ... ok test_satag_length (test_satag.TestSAExtraction) ... ok test_satag_negative_mapq (test_satag.TestSAExtractionError) ... ok test_satag_too_many_fields (test_satag.TestSAExtractionError) ... WARNING:root:SA tag does not consist of 6 fields. This could be a sign of invalid characters (e.g. commas or semicolons) in a chromosome name of the reference genome. ok ---------------------------------------------------------------------- Ran 19 tests in 1.872s OK find deban/ -name '*.bam*'| xargs rm -rf find: ‘deban/’: No such file or directory make[1]: Leaving directory '/build/svim-1.4.2+ds' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/svim-1.4.2+ds/debian/svim running install running build running build_py running build_scripts running install_lib creating /build/svim-1.4.2+ds/debian/svim/usr creating /build/svim-1.4.2+ds/debian/svim/usr/lib creating /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9 creating /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages creating /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim creating /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/__pycache__ copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim/__pycache__/SVIM_merging.cpython-39.pyc -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/__pycache__ copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim/__pycache__/SVIM_COMBINE.cpython-39.pyc -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/__pycache__ copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim/__pycache__/SVIM_CLUSTER.cpython-39.pyc -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/__pycache__ copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim/__pycache__/SVIM_input_parsing.cpython-39.pyc -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/__pycache__ copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim/__pycache__/SVCandidate.cpython-39.pyc -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/__pycache__ copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim/__pycache__/SVIM_clustering.cpython-39.pyc -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/__pycache__ copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim/__pycache__/SVIM_inter.cpython-39.pyc -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/__pycache__ copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim/__pycache__/SVSignature.cpython-39.pyc -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/__pycache__ copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim/__pycache__/SVIM_intra.cpython-39.pyc -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/__pycache__ copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim/__pycache__/SVIM_COLLECT.cpython-39.pyc -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/__pycache__ copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim/__pycache__/__init__.cpython-39.pyc -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/__pycache__ copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim/SVCandidate.py -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim/SVIM_CLUSTER.py -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim/SVIM_COLLECT.py -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim/SVIM_COMBINE.py -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim/SVIM_alignment.py -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim/SVIM_clustering.py -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim/SVIM_genotyping.py -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim/SVIM_input_parsing.py -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim/SVIM_inter.py -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim/SVIM_intra.py -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim/SVIM_merging.py -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim/SVIM_plot.py -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim/SVSignature.py -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/svim/__init__.py -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim creating /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/tests copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/tests/__init__.py -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/tests copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/tests/test_Collect.py -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/tests copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/tests/test_Combine.py -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/tests copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/tests/test_Signature.py -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/tests copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/tests/test_clustering.py -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/tests copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/tests/test_input_parsing.py -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/tests copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/tests/test_inter.py -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/tests copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/tests/test_intra.py -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/tests copying /build/svim-1.4.2+ds/.pybuild/cpython3_3.9/build/tests/test_satag.py -> /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/tests byte-compiling /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/SVCandidate.py to SVCandidate.cpython-39.pyc byte-compiling /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/SVIM_CLUSTER.py to SVIM_CLUSTER.cpython-39.pyc byte-compiling /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/SVIM_COLLECT.py to SVIM_COLLECT.cpython-39.pyc byte-compiling /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/SVIM_COMBINE.py to SVIM_COMBINE.cpython-39.pyc byte-compiling /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/SVIM_alignment.py to SVIM_alignment.cpython-39.pyc byte-compiling /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/SVIM_clustering.py to SVIM_clustering.cpython-39.pyc byte-compiling /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/SVIM_genotyping.py to SVIM_genotyping.cpython-39.pyc byte-compiling /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/SVIM_input_parsing.py to SVIM_input_parsing.cpython-39.pyc byte-compiling /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/SVIM_inter.py to SVIM_inter.cpython-39.pyc byte-compiling /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/SVIM_intra.py to SVIM_intra.cpython-39.pyc byte-compiling /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/SVIM_merging.py to SVIM_merging.cpython-39.pyc byte-compiling /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/SVIM_plot.py to SVIM_plot.cpython-39.pyc byte-compiling /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/SVSignature.py to SVSignature.cpython-39.pyc byte-compiling /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim/__init__.py to __init__.cpython-39.pyc byte-compiling /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/tests/__init__.py to __init__.cpython-39.pyc byte-compiling /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/tests/test_Collect.py to test_Collect.cpython-39.pyc byte-compiling /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/tests/test_Combine.py to test_Combine.cpython-39.pyc byte-compiling /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/tests/test_Signature.py to test_Signature.cpython-39.pyc byte-compiling /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/tests/test_clustering.py to test_clustering.cpython-39.pyc byte-compiling /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/tests/test_input_parsing.py to test_input_parsing.cpython-39.pyc byte-compiling /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/tests/test_inter.py to test_inter.cpython-39.pyc byte-compiling /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/tests/test_intra.py to test_intra.cpython-39.pyc byte-compiling /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/tests/test_satag.py to test_satag.cpython-39.pyc running install_data copying LICENSE -> /build/svim-1.4.2+ds/debian/svim/usr/ running install_egg_info running egg_info creating src/svim.egg-info writing src/svim.egg-info/PKG-INFO writing dependency_links to src/svim.egg-info/dependency_links.txt writing requirements to src/svim.egg-info/requires.txt writing top-level names to src/svim.egg-info/top_level.txt writing manifest file 'src/svim.egg-info/SOURCES.txt' reading manifest file 'src/svim.egg-info/SOURCES.txt' writing manifest file 'src/svim.egg-info/SOURCES.txt' Copying src/svim.egg-info to /build/svim-1.4.2+ds/debian/svim/usr/lib/python3.9/dist-packages/svim-1.4.2.egg-info Skipping SOURCES.txt running install_scripts creating /build/svim-1.4.2+ds/debian/svim/usr/bin copying build/scripts-3.9/svim -> /build/svim-1.4.2+ds/debian/svim/usr/bin changing mode of /build/svim-1.4.2+ds/debian/svim/usr/bin/svim to 755 debian/rules override_dh_install make[1]: Entering directory '/build/svim-1.4.2+ds' dh_install find debian -name LICENSE| xargs rm -rf make[1]: Leaving directory '/build/svim-1.4.2+ds' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package svim: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'svim' in '../svim_1.4.2+ds-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../svim_1.4.2+ds-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4467 and its subdirectories I: Current time: Wed Jul 21 21:22:12 -12 2021 I: pbuilder-time-stamp: 1626945732 Thu Jul 22 09:22:14 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink13-arm64.debian.net. Thu Jul 22 09:22:14 UTC 2021 I: Preparing to do remote build '2' on codethink13-arm64.debian.net. Thu Jul 22 09:23:29 UTC 2021 I: Deleting $TMPDIR on codethink13-arm64.debian.net. Thu Jul 22 09:23:30 UTC 2021 I: svim_1.4.2+ds-1_arm64.changes: Format: 1.8 Date: Wed, 21 Oct 2020 15:03:53 +0530 Source: svim Binary: svim Architecture: all Version: 1.4.2+ds-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: svim - Structural variant caller for long sequencing reads Changes: svim (1.4.2+ds-1) unstable; urgency=medium . * New upstream version Checksums-Sha1: 9d42a0b0b695f7037fba2e99266a8c101aed9f92 31000 svim_1.4.2+ds-1_all.deb 66d189c0ef59d79e737dee1998eae279dd754a66 6779 svim_1.4.2+ds-1_arm64.buildinfo Checksums-Sha256: 079e2f9a4f08ea736dc645a839f2e0850f253b8746a98c408cffe10790078a7f 31000 svim_1.4.2+ds-1_all.deb c9fe393aefa600938dc3fd8f014ca728873a8f1521978f541b0c4376f8b5337b 6779 svim_1.4.2+ds-1_arm64.buildinfo Files: 7f439abc01c57ec22c06ead6d7b0341e 31000 science optional svim_1.4.2+ds-1_all.deb 611edafc67381e1fa36a1151eb5fe34d 6779 science optional svim_1.4.2+ds-1_arm64.buildinfo Thu Jul 22 09:23:31 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.s60qMUCFEK/svim_1.4.2+ds-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.s60qMUCFEK/svim_1.4.2+ds-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.s60qMUCFEK/svim_1.4.2+ds-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.s60qMUCFEK/b1/svim_1.4.2+ds-1_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.s60qMUCFEK/b2/svim_1.4.2+ds-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.306s) 0.306s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.024s) 0.024s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Thu Jul 22 09:23:34 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Thu Jul 22 09:23:34 UTC 2021 I: svim from bullseye built successfully and reproducibly on arm64. Thu Jul 22 09:23:36 UTC 2021 I: Submitting .buildinfo files to external archives: Thu Jul 22 09:23:36 UTC 2021 I: Submitting 8.0K b1/svim_1.4.2+ds-1_arm64.buildinfo.asc Thu Jul 22 09:23:38 UTC 2021 I: Submitting 8.0K b2/svim_1.4.2+ds-1_arm64.buildinfo.asc Thu Jul 22 09:23:39 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jul 22 09:23:39 UTC 2021 I: Done submitting .buildinfo files. Thu Jul 22 09:23:39 UTC 2021 I: Removing signed svim_1.4.2+ds-1_arm64.buildinfo.asc files: removed './b1/svim_1.4.2+ds-1_arm64.buildinfo.asc' removed './b2/svim_1.4.2+ds-1_arm64.buildinfo.asc'