Tue Sep 7 05:22:06 UTC 2021 I: starting to build stringtie/bullseye/arm64 on jenkins on '2021-09-07 05:21' Tue Sep 7 05:22:06 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_4/36491/console.log Tue Sep 7 05:22:06 UTC 2021 I: Downloading source for bullseye/stringtie=2.1.4+ds-4 --2021-09-07 05:22:06-- http://cdn-fastly.deb.debian.org/debian/pool/main/s/stringtie/stringtie_2.1.4%2bds-4.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2413 (2.4K) Saving to: ‘stringtie_2.1.4+ds-4.dsc’ 0K .. 100% 107M=0s 2021-09-07 05:22:06 (107 MB/s) - ‘stringtie_2.1.4+ds-4.dsc’ saved [2413/2413] Tue Sep 7 05:22:06 UTC 2021 I: stringtie_2.1.4+ds-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: stringtie Binary: stringtie Architecture: any Version: 2.1.4+ds-4 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Nilesh Patra Homepage: https://ccb.jhu.edu/software/stringtie/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/stringtie Vcs-Git: https://salsa.debian.org/med-team/stringtie.git Testsuite: autopkgtest Testsuite-Triggers: samtools Build-Depends: debhelper-compat (= 13), libbam-dev, libhts-dev, help2man Package-List: stringtie deb science optional arch=any Checksums-Sha1: d10b773117f72f24088aeb8cb473cea800a4267a 789340 stringtie_2.1.4+ds.orig-debian-tests-data.tar.xz 63c07d48d1f55eab657b52d7ec3380a48ccb43a0 243788 stringtie_2.1.4+ds.orig.tar.xz 58abd6eaa91daca51ab2e59d0a350993bc6bad29 9076 stringtie_2.1.4+ds-4.debian.tar.xz Checksums-Sha256: 17efd2027d242890fd6828174508b63911f538cb83b2d2e87bcd3871e8a4f09b 789340 stringtie_2.1.4+ds.orig-debian-tests-data.tar.xz 3acc465f6549be6e0c6a1a5ce5cd9525caaa47e64fafc7fb3022d6f877c94fcd 243788 stringtie_2.1.4+ds.orig.tar.xz 361e5f4d868a66e6a2928e8a2f8bdc0dfe71b114bdea9b36c719368fd6c424f8 9076 stringtie_2.1.4+ds-4.debian.tar.xz Files: 6cd4731819c8630e1a6f7624a5b910da 789340 stringtie_2.1.4+ds.orig-debian-tests-data.tar.xz c08c2a5a6e16168575fb44900b7bc0ec 243788 stringtie_2.1.4+ds.orig.tar.xz a992b5d7b804c7b43951d2fc5619f37a 9076 stringtie_2.1.4+ds-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl+vkaUUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafGBVQ/+LQxZWZxP/ZyDglVkpW6uDDX0aXYW Hkus7hAzuiCri1/KeuDWOTLeW4B+VZRTfEMoUT17v4v1ZkGgq/E6ThTeL9DQN7Dm mErI5TqspqLPe1IVi45CG85ktYxiccSgVbYeQnUuYDdg/9bFo0BHTR6gBm9XAeWR zmY8hKVasH0pKI9lk+uQWdHuOFne3aHABfhBSkpm5R7JQWIeprQXgWIvnaIMItwp ddOXtpSFEBV9ne294kLwCe9aHJECDs87NttstTQidkuDjWZGcnfPlqfMrP1snasJ To0yJxnzZeXB222KfNuis4ki1XVJ+6aPlVcqE6vqzrmnTrT6M5G5Vly5/sApcNlE NArTFrfd9AknqNYYGIQSI0RT/7Qj0X5Y7vRPTtyRWiGVS8qhN5zkO+csZg1QD1md KMFH7nqGQZhlU7oUuLcBdCMkYfIT3UKEO9e3fTg5cd2avLlzYocjQGAPnbz6o4Dr pwhclYUAbMHnd+o2XfilCG/f38TqqtjBI39aOPqxv6y8OqdyPpAR/sUfEVvGaBJC UZtyQE3S4M/GEeD3xqeL4XfzhFW3Au3jfkkuQOtnLqU9WVhbvkRkyofLxpBI5A20 yYweoDHbUodfuOkVqQYucnzHRX6jyGuCVRaFP84s9kp75Tw1c8v0FtkmsI9Z1B44 KyNQq6DAOQCjksk= =XPxT -----END PGP SIGNATURE----- Tue Sep 7 05:22:06 UTC 2021 I: Checking whether the package is not for us Tue Sep 7 05:22:06 UTC 2021 I: Starting 1st build on remote node codethink9-arm64.debian.net. Tue Sep 7 05:22:06 UTC 2021 I: Preparing to do remote build '1' on codethink9-arm64.debian.net. Tue Sep 7 05:24:27 UTC 2021 I: Deleting $TMPDIR on codethink9-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Oct 9 23:45:12 -12 2022 I: pbuilder-time-stamp: 1665402312 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [stringtie_2.1.4+ds-4.dsc] I: copying [./stringtie_2.1.4+ds.orig-debian-tests-data.tar.xz] I: copying [./stringtie_2.1.4+ds.orig.tar.xz] I: copying [./stringtie_2.1.4+ds-4.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.xzWdLSA5/trustedkeys.kbx': General error gpgv: Signature made Fri Nov 13 20:13:25 2020 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./stringtie_2.1.4+ds-4.dsc dpkg-source: info: extracting stringtie in stringtie-2.1.4+ds dpkg-source: info: unpacking stringtie_2.1.4+ds.orig.tar.xz dpkg-source: info: unpacking stringtie_2.1.4+ds.orig-debian-tests-data.tar.xz dpkg-source: info: unpacking stringtie_2.1.4+ds-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/25259/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='25259' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.vZb4SoO0Rf/pbuilderrc_H36G --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.vZb4SoO0Rf/b1 --logfile b1/build.log stringtie_2.1.4+ds-4.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink9-arm64 4.15.0-154-generic #161-Ubuntu SMP Fri Jul 30 13:01:15 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Aug 4 2021 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Jul 28 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Jul 28 2021 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Jul 28 2021 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Jul 28 2021 more -rwsr-xr-x 1 root root 51360 Jul 28 2021 mount -rwxr-xr-x 1 root root 14496 Jul 28 2021 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 23 03:48 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Jul 28 2021 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Jul 28 2021 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Jul 28 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/25259/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libbam-dev, libhts-dev, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbam-dev; however: Package libbam-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libbam-dev{a} libbrotli1{a} libcurl3-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1{a} libfile-stripnondeterminism-perl{a} libhts-dev{a} libhts3{a} libicu67{a} libldap-2.4-2{a} liblocale-gettext-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libnghttp2-14{a} libpipeline1{a} libpsl5{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix wget 0 packages upgraded, 50 newly installed, 0 to remove and 0 not upgraded. Need to get 24.7 MB of archives. After unpacking 80.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-8 [142 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 liblocale-gettext-perl arm64 1.07-4+b1 [18.9 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 help2man arm64 1.48.1 [190 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 libbam-dev arm64 0.1.19+dfsg-2 [113 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1 [69.3 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1 [105 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-3 [222 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libssh2-1 arm64 1.9.0-2 [150 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 libcurl3-gnutls arm64 7.74.0-1.3+b1 [318 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 libcurl4-gnutls-dev arm64 7.74.0-1.3+b1 [419 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 libdeflate0 arm64 1.7-1 [47.7 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 libdeflate-dev arm64 1.7-1 [44.5 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 libhts3 arm64 1.11-4 [346 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 liblzma-dev arm64 5.2.5-2 [227 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 libhts-dev arm64 1.11-4 [3856 kB] Fetched 24.7 MB in 2s (15.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8_arm64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../03-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../05-liblocale-gettext-perl_1.07-4+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../07-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../08-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/stringtie-2.1.4+ds/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../stringtie_2.1.4+ds-4_source.changes dpkg-buildpackage: info: source package stringtie dpkg-buildpackage: info: source version 2.1.4+ds-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/stringtie-2.1.4+ds' dh_auto_clean install -d /build/stringtie-2.1.4\+ds/debian/.debhelper/generated/_source/home make -j8 clean make[2]: Entering directory '/build/stringtie-2.1.4+ds' rm -f stringtie stringtie.o* ./gclib/GBase.o ./gclib/GArgs.o ./gclib/GStr.o ./gclib/GBam.o ./gclib/gdna.o ./gclib/codons.o ./gclib/GFastaIndex.o ./gclib/GFaSeqGet.o ./gclib/gff.o ./gclib/GThreads.o rlink.o tablemaker.o tmerge.o rm -f core.* make[2]: Leaving directory '/build/stringtie-2.1.4+ds' rm -f debian/stringtie.1 rm -fr test_data rm -f SuperReads_RNA/global-1/SuperReadsR/all_tests make[1]: Leaving directory '/build/stringtie-2.1.4+ds' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/stringtie.substvars debian/files rm -fr -- debian/stringtie/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure install -d /build/stringtie-2.1.4\+ds/debian/.debhelper/generated/_source/home debian/rules override_dh_auto_build make[1]: Entering directory '/build/stringtie-2.1.4+ds' dh_auto_build -- 'LINKER=$(CXX)' make -j8 "INSTALL=install --strip-program=true" LINKER=\$\(CXX\) make[2]: Entering directory '/build/stringtie-2.1.4+ds' g++ -g -O2 -fdebug-prefix-map=/build/stringtie-2.1.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++0x -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c gclib/GBase.cpp -o gclib/GBase.o g++ -g -O2 -fdebug-prefix-map=/build/stringtie-2.1.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++0x -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c gclib/GArgs.cpp -o gclib/GArgs.o g++ -g -O2 -fdebug-prefix-map=/build/stringtie-2.1.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++0x -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c gclib/GStr.cpp -o gclib/GStr.o g++ -g -O2 -fdebug-prefix-map=/build/stringtie-2.1.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++0x -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c gclib/GBam.cpp -o gclib/GBam.o g++ -g -O2 -fdebug-prefix-map=/build/stringtie-2.1.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++0x -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c gclib/gdna.cpp -o gclib/gdna.o g++ -g -O2 -fdebug-prefix-map=/build/stringtie-2.1.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++0x -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c gclib/codons.cpp -o gclib/codons.o g++ -g -O2 -fdebug-prefix-map=/build/stringtie-2.1.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++0x -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c gclib/GFastaIndex.cpp -o gclib/GFastaIndex.o g++ -g -O2 -fdebug-prefix-map=/build/stringtie-2.1.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++0x -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c gclib/GFaSeqGet.cpp -o gclib/GFaSeqGet.o In file included from gclib/GBam.cpp:1: gclib/GBam.h:24:14: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 24 | struct { | ^ g++ -g -O2 -fdebug-prefix-map=/build/stringtie-2.1.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++0x -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c gclib/gff.cpp -o gclib/gff.o gclib/GFastaIndex.cpp: In member function 'int GFastaIndex::loadIndex(const char*)': gclib/GFastaIndex.cpp:55:22: warning: format '%d' expects argument of type 'int*', but argument 3 has type 'uint*' {aka 'unsigned int*'} [-Wformat=] 55 | sscanf(p, "%d%lld%d%d", &len, &offset, &line_len, &line_blen); | ~^ ~~~~ | | | | int* uint* {aka unsigned int*} | %d g++ -g -O2 -fdebug-prefix-map=/build/stringtie-2.1.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++0x -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c gclib/GThreads.cpp -o gclib/GThreads.o In file included from gclib/gff.cpp:1: gclib/gff.h:228:13: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 228 | struct { | ^ gclib/gff.h:231:13: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 231 | struct { | ^ gclib/gff.h:327:12: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 327 | struct { | ^ gclib/gff.h:689:14: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 689 | struct { | ^ gclib/gff.h:1148:12: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 1148 | struct { | ^ g++ -g -O2 -fdebug-prefix-map=/build/stringtie-2.1.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++0x -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c rlink.cpp -o rlink.o g++ -g -O2 -fdebug-prefix-map=/build/stringtie-2.1.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++0x -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c tablemaker.cpp -o tablemaker.o g++ -g -O2 -fdebug-prefix-map=/build/stringtie-2.1.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++0x -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c tmerge.cpp -o tmerge.o In file included from rlink.h:5, from rlink.cpp:1: ./gclib/gff.h:228:13: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 228 | struct { | ^ ./gclib/gff.h:231:13: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 231 | struct { | ^ ./gclib/gff.h:327:12: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 327 | struct { | ^ g++ -g -O2 -fdebug-prefix-map=/build/stringtie-2.1.4+ds=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -I/usr/include/bamtools/api/ -DDEBUG -D_DEBUG -DGDEBUG -Wall -Wextra -I. -I./gclib -I/usr/include/samtools -I/usr/include/htslib -fsigned-char -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -std=c++0x -fno-strict-aliasing -fno-exceptions -fno-rtti -Wno-implicit-fallthrough -Wno-class-memaccess -pthread -c stringtie.cpp -o stringtie.o ./gclib/gff.h:689:14: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 689 | struct { | ^ ./gclib/gff.h:1148:12: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 1148 | struct { | ^ In file included from rlink.h:6, from rlink.cpp:1: ./gclib/GBam.h:24:14: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 24 | struct { | ^ In file included from rlink.h:5, from tablemaker.cpp:2: ./gclib/gff.h:228:13: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 228 | struct { | ^ ./gclib/gff.h:231:13: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 231 | struct { | ^ ./gclib/gff.h:327:12: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 327 | struct { | ^ ./gclib/gff.h:689:14: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 689 | struct { | ^ ./gclib/gff.h:1148:12: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 1148 | struct { | ^ In file included from rlink.h:6, from tablemaker.cpp:2: ./gclib/GBam.h:24:14: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 24 | struct { | ^ In file included from rlink.h:5, from stringtie.cpp:2: ./gclib/gff.h:228:13: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 228 | struct { | ^ ./gclib/gff.h:231:13: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 231 | struct { | ^ ./gclib/gff.h:327:12: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 327 | struct { | ^ ./gclib/gff.h:689:14: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 689 | struct { | ^ ./gclib/gff.h:1148:12: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 1148 | struct { | ^ In file included from rlink.h:6, from stringtie.cpp:2: ./gclib/GBam.h:24:14: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 24 | struct { | ^ In file included from rlink.h:5, from tmerge.h:5, from tmerge.cpp:1: ./gclib/gff.h:228:13: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 228 | struct { | ^ ./gclib/gff.h:231:13: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 231 | struct { | ^ ./gclib/gff.h:327:12: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 327 | struct { | ^ ./gclib/gff.h:689:14: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 689 | struct { | ^ ./gclib/gff.h:1148:12: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 1148 | struct { | ^ In file included from rlink.h:6, from tmerge.h:5, from tmerge.cpp:1: ./gclib/GBam.h:24:14: warning: ISO C++ prohibits anonymous structs [-Wpedantic] 24 | struct { | ^ In file included from rlink.h:10, from stringtie.cpp:2: ./gclib/GIntHash.hh:292:2: warning: extra ';' [-Wpedantic] 292 | }; | ^ In file included from rlink.h:10, from tablemaker.cpp:2: ./gclib/GIntHash.hh:292:2: warning: extra ';' [-Wpedantic] 292 | }; | ^ In file included from rlink.h:10, from rlink.cpp:1: ./gclib/GIntHash.hh:292:2: warning: extra ';' [-Wpedantic] 292 | }; | ^ In file included from rlink.h:10, from tmerge.h:5, from tmerge.cpp:1: ./gclib/GIntHash.hh:292:2: warning: extra ';' [-Wpedantic] 292 | }; | ^ rlink.cpp: In function 'void count_good_junctions(BundleData*)': rlink.cpp:14102:22: warning: format '%p' expects argument of type 'void*', but argument 3 has type 'CJunction*' [-Wformat=] 14102 | sprintf(sbuf, "%p", junction[j]); | ~^ | | | void* rlink.cpp:14118:25: warning: format '%p' expects argument of type 'void*', but argument 3 has type 'CJunction*' [-Wformat=] 14118 | sprintf(sbuf, "%p", junction[equal[s]]); | ~^ | | | void* rlink.cpp:14128:22: warning: format '%p' expects argument of type 'void*', but argument 3 has type 'CJunction*' [-Wformat=] 14128 | sprintf(sbuf, "%p", ejunction[j]); | ~^ | | | void* rlink.cpp:14144:25: warning: format '%p' expects argument of type 'void*', but argument 3 has type 'CJunction*' [-Wformat=] 14144 | sprintf(sbuf, "%p", ejunction[equal[s]]); | ~^ | | | void* rlink.cpp:14184:22: warning: format '%p' expects argument of type 'void*', but argument 3 has type 'CJunction*' [-Wformat=] 14184 | sprintf(sbuf, "%p", rd.juncs[i-1]); | ~^ | | | void* g++ -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o stringtie gclib/GBase.o gclib/GArgs.o gclib/GStr.o gclib/GBam.o gclib/gdna.o gclib/codons.o gclib/GFastaIndex.o gclib/GFaSeqGet.o gclib/gff.o gclib/GThreads.o rlink.o tablemaker.o tmerge.o stringtie.o -pthread -lhts -lbam -lz WARNING: built DEBUG version [much slower], use "make clean release" for a faster, optimized version of the program. make[2]: Leaving directory '/build/stringtie-2.1.4+ds' make[1]: Leaving directory '/build/stringtie-2.1.4+ds' rm -f debian/stringtie.debhelper.log debian/rules override_dh_auto_test make[1]: Entering directory '/build/stringtie-2.1.4+ds' echo "Disabling tests, as they require network access." Disabling tests, as they require network access. make[1]: Leaving directory '/build/stringtie-2.1.4+ds' create-stamp debian/debhelper-build-stamp dh_prep rm -f -- debian/stringtie.substvars rm -fr -- debian/.debhelper/generated/stringtie/ debian/stringtie/ debian/tmp/ debian/rules override_dh_auto_install make[1]: Entering directory '/build/stringtie-2.1.4+ds' help2man ./stringtie -n StringTie -s 1 -o debian/stringtie.1 dh_auto_install install -d /build/stringtie-2.1.4\+ds/debian/stringtie make[1]: Leaving directory '/build/stringtie-2.1.4+ds' dh_install install -d debian/stringtie/usr/bin cp --reflink=auto -a ./stringtie debian/stringtie/usr/bin/ install -d debian/.debhelper/generated/stringtie dh_installdocs install -d debian/stringtie/usr/share/doc/stringtie install -p -m0644 debian/copyright debian/stringtie/usr/share/doc/stringtie/copyright dh_installchangelogs install -p -m0644 debian/changelog debian/stringtie/usr/share/doc/stringtie/changelog.Debian dh_installman install -d debian/stringtie/usr/share/man/man1/ install -p -m0644 ./debian/stringtie.1 debian/stringtie/usr/share/man/man1/stringtie.1 man-recode --to-code UTF-8 --suffix .dh-new debian/stringtie/usr/share/man/man1/stringtie.1 mv debian/stringtie/usr/share/man/man1/stringtie.1.dh-new debian/stringtie/usr/share/man/man1/stringtie.1 chmod 0644 -- debian/stringtie/usr/share/man/man1/stringtie.1 dh_perl dh_link dh_strip_nondeterminism dh_compress cd debian/stringtie chmod a-x usr/share/doc/stringtie/changelog.Debian usr/share/man/man1/stringtie.1 gzip -9nf usr/share/doc/stringtie/changelog.Debian usr/share/man/man1/stringtie.1 cd '/build/stringtie-2.1.4+ds' dh_fixperms find debian/stringtie ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/stringtie/usr/share/doc -type f -a -true -a ! -regex 'debian/stringtie/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/stringtie/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/stringtie/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/stringtie -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/stringtie/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_dwz -a dwz -- debian/stringtie/usr/bin/stringtie dh_strip -a install -d debian/.debhelper/stringtie/dbgsym-root/usr/lib/debug/.build-id/81 objcopy --only-keep-debug --compress-debug-sections debian/stringtie/usr/bin/stringtie debian/.debhelper/stringtie/dbgsym-root/usr/lib/debug/.build-id/81/a03abb4bb8d2f4d2f08e9c2577047cf5ad9ef1.debug chmod 0644 -- debian/.debhelper/stringtie/dbgsym-root/usr/lib/debug/.build-id/81/a03abb4bb8d2f4d2f08e9c2577047cf5ad9ef1.debug strip --remove-section=.comment --remove-section=.note debian/stringtie/usr/bin/stringtie objcopy --add-gnu-debuglink debian/.debhelper/stringtie/dbgsym-root/usr/lib/debug/.build-id/81/a03abb4bb8d2f4d2f08e9c2577047cf5ad9ef1.debug debian/stringtie/usr/bin/stringtie install -d debian/.debhelper/stringtie/dbgsym-root/usr/share/doc ln -s stringtie debian/.debhelper/stringtie/dbgsym-root/usr/share/doc/stringtie-dbgsym dh_makeshlibs -a rm -f debian/stringtie/DEBIAN/shlibs dh_shlibdeps -a install -d debian/stringtie/DEBIAN dpkg-shlibdeps -Tdebian/stringtie.substvars debian/stringtie/usr/bin/stringtie dh_installdeb dh_gencontrol echo misc:Depends= >> debian/stringtie.substvars echo misc:Pre-Depends= >> debian/stringtie.substvars install -d debian/.debhelper/stringtie/dbgsym-root/DEBIAN dpkg-gencontrol -pstringtie -ldebian/changelog -Tdebian/stringtie.substvars -Pdebian/.debhelper/stringtie/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=stringtie-dbgsym "-DDepends=stringtie (= \${binary:Version})" "-DDescription=debug symbols for stringtie" -DBuild-Ids=81a03abb4bb8d2f4d2f08e9c2577047cf5ad9ef1 -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/stringtie/dbgsym-root/DEBIAN/control dpkg-gencontrol -pstringtie -ldebian/changelog -Tdebian/stringtie.substvars -Pdebian/stringtie chmod 0644 -- debian/stringtie/DEBIAN/control dh_md5sums cd debian/stringtie >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/stringtie/DEBIAN/md5sums cd debian/.debhelper/stringtie/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/stringtie/dbgsym-root/DEBIAN/md5sums dh_builddeb dpkg-deb --root-owner-group --build debian/stringtie .. dpkg-deb --root-owner-group --build debian/.debhelper/stringtie/dbgsym-root .. dpkg-deb: building package 'stringtie-dbgsym' in '../stringtie-dbgsym_2.1.4+ds-4_arm64.deb'. dpkg-deb: building package 'stringtie' in '../stringtie_2.1.4+ds-4_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../stringtie_2.1.4+ds-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/25259 and its subdirectories I: Current time: Sun Oct 9 23:47:26 -12 2022 I: pbuilder-time-stamp: 1665402446 Tue Sep 7 05:24:28 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink16-arm64.debian.net. Tue Sep 7 05:24:28 UTC 2021 I: Preparing to do remote build '2' on codethink16-arm64.debian.net. Tue Sep 7 05:27:08 UTC 2021 I: Deleting $TMPDIR on codethink16-arm64.debian.net. Tue Sep 7 05:27:08 UTC 2021 I: stringtie_2.1.4+ds-4_arm64.changes: Format: 1.8 Date: Sat, 14 Nov 2020 13:38:57 +0530 Source: stringtie Binary: stringtie stringtie-dbgsym Architecture: arm64 Version: 2.1.4+ds-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: stringtie - assemble short RNAseq reads to transcripts Changes: stringtie (2.1.4+ds-4) unstable; urgency=medium . * Do not run on armhf Checksums-Sha1: 503503fdd8db64bb33b540e7ade92f91d6fabffe 1672068 stringtie-dbgsym_2.1.4+ds-4_arm64.deb 0bc1b6cfc585aeacb72bb23063e6ccca603a235e 5630 stringtie_2.1.4+ds-4_arm64.buildinfo 6246b7a26b1aa45bf73c8d7f751c4da2a274d587 347220 stringtie_2.1.4+ds-4_arm64.deb Checksums-Sha256: 3a1c50a4f8451bcfbbf2500ebaa5f66baf31bfd415260b7d08c121048e898086 1672068 stringtie-dbgsym_2.1.4+ds-4_arm64.deb 4ab87d224eb32cba49fa31bc7c4587a0bd89fbfc27933ef86015bf1b31f3abff 5630 stringtie_2.1.4+ds-4_arm64.buildinfo 2cd2d670f2e40e50a07d5dc5e134b1475fa2857b127d2187acc9b3cdd8c2f371 347220 stringtie_2.1.4+ds-4_arm64.deb Files: 6cf0dea0f1358e6a761dd57cf002c9d6 1672068 debug optional stringtie-dbgsym_2.1.4+ds-4_arm64.deb bb24ab7f272de3062837159e5457bce4 5630 science optional stringtie_2.1.4+ds-4_arm64.buildinfo 8c8ddd95d4f7f9c1b81d43b72ff0c0bb 347220 science optional stringtie_2.1.4+ds-4_arm64.deb Tue Sep 7 05:27:34 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.vZb4SoO0Rf/stringtie_2.1.4+ds-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.vZb4SoO0Rf/stringtie_2.1.4+ds-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.vZb4SoO0Rf/stringtie_2.1.4+ds-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.vZb4SoO0Rf/b1/stringtie_2.1.4+ds-4_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.vZb4SoO0Rf/b2/stringtie_2.1.4+ds-4_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.415s) 0.415s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.050s) 0.049s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Tue Sep 7 05:28:24 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Tue Sep 7 05:28:24 UTC 2021 I: stringtie from bullseye built successfully and reproducibly on arm64. Tue Sep 7 05:28:25 UTC 2021 I: Submitting .buildinfo files to external archives: Tue Sep 7 05:28:25 UTC 2021 I: Submitting 8.0K b1/stringtie_2.1.4+ds-4_arm64.buildinfo.asc Tue Sep 7 05:28:26 UTC 2021 I: Submitting 8.0K b2/stringtie_2.1.4+ds-4_arm64.buildinfo.asc Tue Sep 7 05:28:27 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Sep 7 05:28:27 UTC 2021 I: Done submitting .buildinfo files. Tue Sep 7 05:28:27 UTC 2021 I: Removing signed stringtie_2.1.4+ds-4_arm64.buildinfo.asc files: removed './b1/stringtie_2.1.4+ds-4_arm64.buildinfo.asc' removed './b2/stringtie_2.1.4+ds-4_arm64.buildinfo.asc'