Thu Jul 15 19:36:48 UTC 2021 I: starting to build sibelia/bullseye/arm64 on jenkins on '2021-07-15 19:36' Thu Jul 15 19:36:48 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_32/50954/console.log Thu Jul 15 19:36:48 UTC 2021 I: Downloading source for bullseye/sibelia=3.0.7+dfsg-3 --2021-07-15 19:36:49-- http://cdn-fastly.deb.debian.org/debian/pool/main/s/sibelia/sibelia_3.0.7+dfsg-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2132 (2.1K) Saving to: ‘sibelia_3.0.7+dfsg-3.dsc’ 0K .. 100% 127M=0s 2021-07-15 19:36:49 (127 MB/s) - ‘sibelia_3.0.7+dfsg-3.dsc’ saved [2132/2132] Thu Jul 15 19:36:49 UTC 2021 I: sibelia_3.0.7+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: sibelia Binary: sibelia, sibelia-examples Architecture: any all Version: 3.0.7+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: http://bioinf.spbau.ru/sibelia Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/sibelia Vcs-Git: https://salsa.debian.org/med-team/sibelia.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12), cmake, libdivsufsort-dev, libboost-dev, libseqan2-dev, libtclap-dev, libhts-dev Package-List: sibelia deb science optional arch=any sibelia-examples deb science optional arch=all Checksums-Sha1: fab5441d7decc4e9dedbf1169549d85241c132cc 4833128 sibelia_3.0.7+dfsg.orig.tar.xz 88412f8aeaccc9d9f011c5da4db3637f95d49922 10240 sibelia_3.0.7+dfsg-3.debian.tar.xz Checksums-Sha256: d4dd618fe9f373be8ad90f9b1d670ac8e45a7386d67e28b0d055e1d77f9d7caa 4833128 sibelia_3.0.7+dfsg.orig.tar.xz bb7d1255911a04c84c953ff5d55c861386d3473069fbcc6bed9aaf29a06bccd5 10240 sibelia_3.0.7+dfsg-3.debian.tar.xz Files: 38311be6d2eee4d5e4d4a8ccf2d9c85e 4833128 sibelia_3.0.7+dfsg.orig.tar.xz 388e525dada128486669834bc22336ff 10240 sibelia_3.0.7+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJCBAEBCAAsFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl6VdkkOHHRpbGxlYUBy a2kuZGUACgkQV4oElNHGRtHGiBAAm6u4tj9UWS8HgpXWxznQI9vGg9FrdDSxTzEB qPJmfeqdtIMCpZ0GjeHH8PruiVjptMup0Z/q9IwR8DBhsjWpMqmo6bZlDMp7uycU vGjCLNO9qA/NOFofCqFmPzAZw7IRSr7iORHeCfvM7+CCs0cHCSYjWZdAgJcNwnTv d8aBV1CrzsRBoaaNs0ptDSf1TW/h7lFWtgO4KDrznq+DYLzVSQtW/krvvSa8DLps x8YB0ycVZX5604gVOn9MaYmnk8qhEcp3D0Tvtxv1vYBS/Rq3IGkQL3E1OMAKTdas 2YMQ5La2oynGPTtWAR3Lm4txmRwi7/w1ezNlq7KL5rSN/0PfmKVOyPxWxcleDR5Z ZIDbBAtj0/4fkdjfy/QM0dAREnHsnn0io27p75XqZlYChNB7VTiAs+MNBFud3GNW SMLkjRPxgZrncXzN0eSPnVQG4qh8ug95eZqcxUlhRKln0C3Mi1W00/wsl/AdJq0Q joziW7xlWKGL5ZPcYhwItWj7Ez6dBzOVCXzXeawO/vk5WfE6pcLnoKjf7n9NiDgu FFSAR8uuYkr0hkb6gDtOLbSIYcONcq7v4bglP1j1FR8oknEuw1h39mj/uHnVs2dN nLJdK7BfhdDOVqO76CSOqcXMGof8qaSVCGyKnnWK0C7n47cazszkrRTfZoXNSIyq 3NAyp/E= =uCA9 -----END PGP SIGNATURE----- Thu Jul 15 19:36:49 UTC 2021 I: Checking whether the package is not for us Thu Jul 15 19:36:49 UTC 2021 I: Starting 1st build on remote node codethink16-arm64.debian.net. Thu Jul 15 19:36:49 UTC 2021 I: Preparing to do remote build '1' on codethink16-arm64.debian.net. Thu Jul 15 19:41:19 UTC 2021 I: Deleting $TMPDIR on codethink16-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Jul 15 07:36:53 -12 2021 I: pbuilder-time-stamp: 1626377813 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [sibelia_3.0.7+dfsg-3.dsc] I: copying [./sibelia_3.0.7+dfsg.orig.tar.xz] I: copying [./sibelia_3.0.7+dfsg-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.66bKyapY/trustedkeys.kbx': General error gpgv: Signature made Mon Apr 13 20:37:29 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tillea@rki.de" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./sibelia_3.0.7+dfsg-3.dsc dpkg-source: info: extracting sibelia in sibelia-3.0.7+dfsg dpkg-source: info: unpacking sibelia_3.0.7+dfsg.orig.tar.xz dpkg-source: info: unpacking sibelia_3.0.7+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libdivsufsort.patch dpkg-source: info: applying use_debian_packaged_lagan.patch dpkg-source: info: applying snpeff_is_removed.patch dpkg-source: info: applying 2to3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/20191/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='20191' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.RuH7658A8j/pbuilderrc_vmhq --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.RuH7658A8j/b1 --logfile b1/build.log sibelia_3.0.7+dfsg-3.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink16-arm64 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:18:37 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Jun 21 14:26 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Feb 7 02:38 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Feb 7 02:38 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Feb 7 02:38 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Feb 7 02:38 more -rwsr-xr-x 1 root root 51360 Feb 7 02:38 mount -rwxr-xr-x 1 root root 14496 Feb 7 02:38 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Jul 13 21:24 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Feb 7 02:38 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 21:55 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30880 Feb 7 02:38 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Feb 7 02:38 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/20191/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), cmake, libdivsufsort-dev, libboost-dev, libseqan2-dev, libtclap-dev, libhts-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libdivsufsort-dev; however: Package libdivsufsort-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev; however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on libtclap-dev; however: Package libtclap-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdivsufsort-dev{a} libdivsufsort3{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libhts-dev{a} libhts3{a} libicu67{a} libjsoncpp24{a} libldap-2.4-2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libncurses6{a} libnghttp2-14{a} libpipeline1{a} libprocps8{a} libpsl5{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libsigsegv2{a} libssh2-1{a} libsub-override-perl{a} libtclap-dev{a} libtool{a} libuchardet0{a} libuv1{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx psmisc publicsuffix wget 0 packages upgraded, 64 newly installed, 0 to remove and 0 not upgraded. Need to get 42.4 MB of archives. After unpacking 269 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libncurses6 arm64 6.2+20201114-2 [93.2 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libprocps8 arm64 2:3.3.17-5 [61.9 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 procps arm64 2:3.3.17-5 [497 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 cmake-data all 3.18.4-2 [1725 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libarchive13 arm64 3.4.3-2+b1 [320 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1 [69.3 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1 [105 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-3 [222 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 libssh2-1 arm64 1.9.0-2 [150 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libcurl4 arm64 7.74.0-1.3+b1 [321 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libjsoncpp24 arm64 1.9.4-4 [72.5 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 librhash0 arm64 1.4.1-2 [127 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libuv1 arm64 1.40.0-2 [126 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 cmake arm64 3.18.4-2 [3673 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libboost1.74-dev arm64 1.74.0-9 [9534 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 libboost-dev arm64 1.74.0.3 [4548 B] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libcurl3-gnutls arm64 7.74.0-1.3+b1 [318 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libcurl4-gnutls-dev arm64 7.74.0-1.3+b1 [419 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libdeflate0 arm64 1.7-1 [47.7 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 libdeflate-dev arm64 1.7-1 [44.5 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libdivsufsort3 arm64 2.0.1-5 [38.9 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 libdivsufsort-dev arm64 2.0.1-5 [19.1 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 libhts3 arm64 1.11-4 [346 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 liblzma-dev arm64 5.2.5-2 [227 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 libhts-dev arm64 1.11-4 [3856 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 libseqan2-dev all 2.4.0+dfsg-14 [1220 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 libtclap-dev arm64 1.2.3-1 [143 kB] Fetched 42.4 MB in 1s (46.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-7_arm64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ... 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Selecting previously unselected package libmagic-mgc. Preparing to unpack .../09-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../10-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../11-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../12-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../13-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../14-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../15-autoconf_2.69-14_all.deb ... 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Selecting previously unselected package libarchive13:arm64. Preparing to unpack .../22-libarchive13_3.4.3-2+b1_arm64.deb ... Unpacking libarchive13:arm64 (3.4.3-2+b1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../23-libbrotli1_1.0.9-2+b2_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b2) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../24-libsasl2-modules-db_2.1.27+dfsg-2.1_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../25-libsasl2-2_2.1.27+dfsg-2.1_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:arm64. Preparing to unpack .../26-libldap-2.4-2_2.4.57+dfsg-3_arm64.deb ... Unpacking libldap-2.4-2:arm64 (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../27-libnghttp2-14_1.43.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.43.0-1) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../28-libpsl5_0.21.0-1.2_arm64.deb ... Unpacking libpsl5:arm64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../29-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:arm64. Preparing to unpack .../30-libssh2-1_1.9.0-2_arm64.deb ... Unpacking libssh2-1:arm64 (1.9.0-2) ... Selecting previously unselected package libcurl4:arm64. Preparing to unpack .../31-libcurl4_7.74.0-1.3+b1_arm64.deb ... Unpacking libcurl4:arm64 (7.74.0-1.3+b1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../32-libexpat1_2.2.10-2_arm64.deb ... Unpacking libexpat1:arm64 (2.2.10-2) ... 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Selecting previously unselected package dwz. Preparing to unpack .../45-dwz_0.13+20210201-1_arm64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package gettext. Preparing to unpack .../46-gettext_0.21-4_arm64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../47-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../48-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../49-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package libboost1.74-dev:arm64. Preparing to unpack .../50-libboost1.74-dev_1.74.0-9_arm64.deb ... Unpacking libboost1.74-dev:arm64 (1.74.0-9) ... Selecting previously unselected package libboost-dev:arm64. 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Selecting previously unselected package libdivsufsort-dev:arm64. Preparing to unpack .../57-libdivsufsort-dev_2.0.1-5_arm64.deb ... Unpacking libdivsufsort-dev:arm64 (2.0.1-5) ... Selecting previously unselected package libhts3:arm64. Preparing to unpack .../58-libhts3_1.11-4_arm64.deb ... Unpacking libhts3:arm64 (1.11-4) ... Selecting previously unselected package liblzma-dev:arm64. Preparing to unpack .../59-liblzma-dev_5.2.5-2_arm64.deb ... Unpacking liblzma-dev:arm64 (5.2.5-2) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../60-zlib1g-dev_1%3a1.2.11.dfsg-2_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.2.11.dfsg-2) ... Selecting previously unselected package libhts-dev:arm64. Preparing to unpack .../61-libhts-dev_1.11-4_arm64.deb ... Unpacking libhts-dev:arm64 (1.11-4) ... Selecting previously unselected package libseqan2-dev. Preparing to unpack .../62-libseqan2-dev_2.4.0+dfsg-14_all.deb ... Unpacking libseqan2-dev (2.4.0+dfsg-14) ... Selecting previously unselected package libtclap-dev. Preparing to unpack .../63-libtclap-dev_1.2.3-1_arm64.deb ... Unpacking libtclap-dev (1.2.3-1) ... Setting up libexpat1:arm64 (2.2.10-2) ... Setting up libpipeline1:arm64 (1.5.3-1) ... Setting up libpsl5:arm64 (0.21.0-1.2) ... Setting up libboost1.74-dev:arm64 (1.74.0-9) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b2) ... Setting up libnghttp2-14:arm64 (1.43.0-1) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up libdeflate0:arm64 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libseqan2-dev (2.4.0+dfsg-14) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libuv1:arm64 (1.40.0-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:arm64 (6.2+20201114-2) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-2.1) ... Setting up libtclap-dev (1.2.3-1) ... Setting up libjsoncpp24:arm64 (1.9.4-4) ... Setting up liblzma-dev:arm64 (5.2.5-2) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-2) ... Setting up sensible-utils (0.0.14) ... Setting up librhash0:arm64 (1.4.1-2) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libssh2-1:arm64 (1.9.0-2) ... Setting up cmake-data (3.18.4-2) ... Setting up libboost-dev:arm64 (1.74.0.3) ... Setting up libdivsufsort3:arm64 (2.0.1-5) ... Setting up libdeflate-dev:arm64 (1.7-1) ... Setting up libelf1:arm64 (0.183-1) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ... Setting up libprocps8:arm64 (2:3.3.17-5) ... Setting up libdivsufsort-dev:arm64 (2.0.1-5) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:arm64 (3.4.3-2+b1) ... Setting up libldap-2.4-2:arm64 (2.4.57+dfsg-3) ... Setting up m4 (1.4.18-5) ... Setting up libcurl3-gnutls:arm64 (7.74.0-1.3+b1) ... Setting up libcurl4-gnutls-dev:arm64 (7.74.0-1.3+b1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-5) ... Setting up libcurl4:arm64 (7.74.0-1.3+b1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libhts3:arm64 (1.11-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhts-dev:arm64 (1.11-4) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up cmake (3.18.4-2) ... Setting up debhelper (13.3.4) ... Processing triggers for libc-bin (2.31-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/sibelia-3.0.7+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sibelia_3.0.7+dfsg-3_source.changes dpkg-buildpackage: info: source package sibelia dpkg-buildpackage: info: source version 3.0.7+dfsg-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary dh binary --sourcedirectory=src dh_update_autotools_config -O--sourcedirectory=src dh_autoreconf -O--sourcedirectory=src dh_auto_configure -O--sourcedirectory=src cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu ../src -- The CXX compiler identification is GNU 10.2.1 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu dh_auto_build -O--sourcedirectory=src cd obj-aarch64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/sibelia-3.0.7+dfsg/src -B/build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu/CMakeFiles /build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/Sibelia.dir/build.make CMakeFiles/Sibelia.dir/depend make[3]: Entering directory '/build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu' cd /build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/sibelia-3.0.7+dfsg/src /build/sibelia-3.0.7+dfsg/src /build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu /build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu /build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu/CMakeFiles/Sibelia.dir/DependInfo.cmake --color= Dependee "/build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu/CMakeFiles/Sibelia.dir/DependInfo.cmake" is newer than depender "/build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu/CMakeFiles/Sibelia.dir/depend.internal". Dependee "/build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu/CMakeFiles/Sibelia.dir/depend.internal". Scanning dependencies of target Sibelia make[3]: Leaving directory '/build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/Sibelia.dir/build.make CMakeFiles/Sibelia.dir/build make[3]: Entering directory '/build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu' [ 5%] Building CXX object CMakeFiles/Sibelia.dir/postprocessor.cpp.o [ 10%] Building CXX object CMakeFiles/Sibelia.dir/sibelia.cpp.o /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/postprocessor.cpp.o -c /build/sibelia-3.0.7+dfsg/src/postprocessor.cpp /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/sibelia.cpp.o -c /build/sibelia-3.0.7+dfsg/src/sibelia.cpp [ 15%] Building CXX object CMakeFiles/Sibelia.dir/indexedsequence.cpp.o [ 20%] Building CXX object CMakeFiles/Sibelia.dir/util.cpp.o /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/indexedsequence.cpp.o -c /build/sibelia-3.0.7+dfsg/src/indexedsequence.cpp [ 25%] Building CXX object CMakeFiles/Sibelia.dir/outputgenerator.cpp.o /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/util.cpp.o -c /build/sibelia-3.0.7+dfsg/src/util.cpp /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/outputgenerator.cpp.o -c /build/sibelia-3.0.7+dfsg/src/outputgenerator.cpp [ 30%] Building CXX object CMakeFiles/Sibelia.dir/blockfinder.cpp.o /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/blockfinder.cpp.o -c /build/sibelia-3.0.7+dfsg/src/blockfinder.cpp [ 40%] Building CXX object CMakeFiles/Sibelia.dir/bifurcationstorage.cpp.o [ 35%] Building CXX object CMakeFiles/Sibelia.dir/blockinstance.cpp.o /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/bifurcationstorage.cpp.o -c /build/sibelia-3.0.7+dfsg/src/bifurcationstorage.cpp /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/blockinstance.cpp.o -c /build/sibelia-3.0.7+dfsg/src/blockinstance.cpp In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/common.h:31, from /build/sibelia-3.0.7+dfsg/src/fasta.h:10, from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:10, from /build/sibelia-3.0.7+dfsg/src/hashing.h:10, from /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:10, from /build/sibelia-3.0.7+dfsg/src/indexedsequence.cpp:7: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/common.h:31, from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-3.0.7+dfsg/src/util.h:10, from /build/sibelia-3.0.7+dfsg/src/util.cpp:7: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/common.h:31, from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-3.0.7+dfsg/src/blockinstance.cpp:7: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/common.h:31, from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-3.0.7+dfsg/src/util.h:10, from /build/sibelia-3.0.7+dfsg/src/outputgenerator.h:10, from /build/sibelia-3.0.7+dfsg/src/outputgenerator.cpp:9: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/sibelia-3.0.7+dfsg/src/indexedsequence.cpp:7: /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 37 | std::auto_ptr sequence_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /build/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-3.0.7+dfsg/src/fasta.h:10, from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:10, from /build/sibelia-3.0.7+dfsg/src/hashing.h:10, from /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:10, from /build/sibelia-3.0.7+dfsg/src/indexedsequence.cpp:7: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-3.0.7+dfsg/src/indexedsequence.cpp:7: /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | std::auto_ptr bifStorage_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /build/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-3.0.7+dfsg/src/fasta.h:10, from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:10, from /build/sibelia-3.0.7+dfsg/src/hashing.h:10, from /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:10, from /build/sibelia-3.0.7+dfsg/src/indexedsequence.cpp:7: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/common.h:31, from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-3.0.7+dfsg/src/blockfinder.cpp:7: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/common.h:31, from /build/sibelia-3.0.7+dfsg/src/fasta.h:10, from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:10, from /build/sibelia-3.0.7+dfsg/src/bifurcationstorage.h:11, from /build/sibelia-3.0.7+dfsg/src/bifurcationstorage.cpp:7: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-3.0.7+dfsg/src/util.h:10, from /build/sibelia-3.0.7+dfsg/src/outputgenerator.h:10, from /build/sibelia-3.0.7+dfsg/src/outputgenerator.cpp:9: /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 37 | std::auto_ptr sequence_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /build/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-3.0.7+dfsg/src/util.h:10, from /build/sibelia-3.0.7+dfsg/src/outputgenerator.h:10, from /build/sibelia-3.0.7+dfsg/src/outputgenerator.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-3.0.7+dfsg/src/util.h:10, from /build/sibelia-3.0.7+dfsg/src/outputgenerator.h:10, from /build/sibelia-3.0.7+dfsg/src/outputgenerator.cpp:9: /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | std::auto_ptr bifStorage_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /build/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-3.0.7+dfsg/src/util.h:10, from /build/sibelia-3.0.7+dfsg/src/outputgenerator.h:10, from /build/sibelia-3.0.7+dfsg/src/outputgenerator.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-3.0.7+dfsg/src/util.h:10, from /build/sibelia-3.0.7+dfsg/src/util.cpp:7: /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 37 | std::auto_ptr sequence_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /build/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-3.0.7+dfsg/src/util.h:10, from /build/sibelia-3.0.7+dfsg/src/util.cpp:7: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-3.0.7+dfsg/src/util.h:10, from /build/sibelia-3.0.7+dfsg/src/util.cpp:7: /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | std::auto_ptr bifStorage_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /build/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-3.0.7+dfsg/src/util.h:10, from /build/sibelia-3.0.7+dfsg/src/util.cpp:7: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-3.0.7+dfsg/src/blockfinder.cpp:7: /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 37 | std::auto_ptr sequence_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /build/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-3.0.7+dfsg/src/blockfinder.cpp:7: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-3.0.7+dfsg/src/blockfinder.cpp:7: /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | std::auto_ptr bifStorage_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /build/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-3.0.7+dfsg/src/blockfinder.cpp:7: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ [ 45%] Building CXX object CMakeFiles/Sibelia.dir/bulgeremoval.cpp.o /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/bulgeremoval.cpp.o -c /build/sibelia-3.0.7+dfsg/src/bulgeremoval.cpp [ 50%] Building CXX object CMakeFiles/Sibelia.dir/dnasequence.cpp.o /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/dnasequence.cpp.o -c /build/sibelia-3.0.7+dfsg/src/dnasequence.cpp [ 55%] Building CXX object CMakeFiles/Sibelia.dir/edge.cpp.o /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/edge.cpp.o -c /build/sibelia-3.0.7+dfsg/src/edge.cpp [ 60%] Building CXX object CMakeFiles/Sibelia.dir/fasta.cpp.o /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/fasta.cpp.o -c /build/sibelia-3.0.7+dfsg/src/fasta.cpp In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/common.h:31, from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-3.0.7+dfsg/src/bulgeremoval.cpp:7: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/common.h:31, from /build/sibelia-3.0.7+dfsg/src/fasta.h:10, from /build/sibelia-3.0.7+dfsg/src/postprocessor.h:13, from /build/sibelia-3.0.7+dfsg/src/sibelia.cpp:8: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/common.h:31, from /build/sibelia-3.0.7+dfsg/src/fasta.h:10, from /build/sibelia-3.0.7+dfsg/src/postprocessor.h:13, from /build/sibelia-3.0.7+dfsg/src/postprocessor.cpp:9: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/common.h:31, from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-3.0.7+dfsg/src/edge.cpp:7: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/common.h:31, from /build/sibelia-3.0.7+dfsg/src/fasta.h:10, from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:10, from /build/sibelia-3.0.7+dfsg/src/dnasequence.cpp:7: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-3.0.7+dfsg/src/bulgeremoval.cpp:7: /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 37 | std::auto_ptr sequence_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /build/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-3.0.7+dfsg/src/bulgeremoval.cpp:7: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-3.0.7+dfsg/src/bulgeremoval.cpp:7: /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | std::auto_ptr bifStorage_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /build/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-3.0.7+dfsg/src/bulgeremoval.cpp:7: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-3.0.7+dfsg/src/util.h:10, from /build/sibelia-3.0.7+dfsg/src/sibelia.cpp:9: /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 37 | std::auto_ptr sequence_; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from /usr/include/tclap/Arg.h:37, from /usr/include/tclap/SwitchArg.h:32, from /usr/include/tclap/CmdLine.h:27, from /build/sibelia-3.0.7+dfsg/src/sibelia.cpp:7: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-3.0.7+dfsg/src/util.h:10, from /build/sibelia-3.0.7+dfsg/src/sibelia.cpp:9: /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | std::auto_ptr bifStorage_; | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from /usr/include/tclap/Arg.h:37, from /usr/include/tclap/SwitchArg.h:32, from /usr/include/tclap/CmdLine.h:27, from /build/sibelia-3.0.7+dfsg/src/sibelia.cpp:7: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ /build/sibelia-3.0.7+dfsg/src/sibelia.cpp: In function ‘int main(int, char**)’: /build/sibelia-3.0.7+dfsg/src/sibelia.cpp:239:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 239 | std::auto_ptr finder(inRAM.isSet() ? new SyntenyFinder::BlockFinder(chrList) : new SyntenyFinder::BlockFinder(chrList, tempDir)); | ^~~~~~~~ In file included from /usr/include/c++/10/bits/locale_conv.h:41, from /usr/include/c++/10/locale:43, from /usr/include/c++/10/iomanip:43, from /usr/include/tclap/Arg.h:37, from /usr/include/tclap/SwitchArg.h:32, from /usr/include/tclap/CmdLine.h:27, from /build/sibelia-3.0.7+dfsg/src/sibelia.cpp:7: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-3.0.7+dfsg/src/edge.cpp:7: /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 37 | std::auto_ptr sequence_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /build/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-3.0.7+dfsg/src/edge.cpp:7: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-3.0.7+dfsg/src/edge.cpp:7: /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | std::auto_ptr bifStorage_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /build/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-3.0.7+dfsg/src/edge.cpp:7: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/common.h:31, from /build/sibelia-3.0.7+dfsg/src/fasta.h:10, from /build/sibelia-3.0.7+dfsg/src/fasta.cpp:7: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/Sibelia.dir/serialization.cpp.o /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/serialization.cpp.o -c /build/sibelia-3.0.7+dfsg/src/serialization.cpp [ 70%] Building CXX object CMakeFiles/Sibelia.dir/synteny.cpp.o /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/synteny.cpp.o -c /build/sibelia-3.0.7+dfsg/src/synteny.cpp In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/common.h:31, from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-3.0.7+dfsg/src/serialization.cpp:7: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/common.h:31, from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-3.0.7+dfsg/src/synteny.cpp:9: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 75%] Building CXX object CMakeFiles/Sibelia.dir/test/unrolledlisttest.cpp.o /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/test/unrolledlisttest.cpp.o -c /build/sibelia-3.0.7+dfsg/src/test/unrolledlisttest.cpp In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-3.0.7+dfsg/src/serialization.cpp:7: /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 37 | std::auto_ptr sequence_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /build/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-3.0.7+dfsg/src/serialization.cpp:7: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-3.0.7+dfsg/src/serialization.cpp:7: /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | std::auto_ptr bifStorage_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /build/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-3.0.7+dfsg/src/serialization.cpp:7: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ [ 80%] Building CXX object CMakeFiles/Sibelia.dir/platform.cpp.o /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/platform.cpp.o -c /build/sibelia-3.0.7+dfsg/src/platform.cpp In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-3.0.7+dfsg/src/synteny.cpp:9: /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 37 | std::auto_ptr sequence_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /build/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-3.0.7+dfsg/src/synteny.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:11, from /build/sibelia-3.0.7+dfsg/src/synteny.cpp:9: /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | std::auto_ptr bifStorage_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /build/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-3.0.7+dfsg/src/blockinstance.h:10, from /build/sibelia-3.0.7+dfsg/src/blockfinder.h:10, from /build/sibelia-3.0.7+dfsg/src/synteny.cpp:9: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ [ 85%] Building CXX object CMakeFiles/Sibelia.dir/stranditerator.cpp.o /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/stranditerator.cpp.o -c /build/sibelia-3.0.7+dfsg/src/stranditerator.cpp In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/test/../common.h:31, from /build/sibelia-3.0.7+dfsg/src/test/unrolledlisttest.h:10, from /build/sibelia-3.0.7+dfsg/src/test/unrolledlisttest.cpp:7: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/common.h:31, from /build/sibelia-3.0.7+dfsg/src/platform.h:10, from /build/sibelia-3.0.7+dfsg/src/platform.cpp:7: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ [ 90%] Building CXX object CMakeFiles/Sibelia.dir/vertexenumeration.cpp.o /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/vertexenumeration.cpp.o -c /build/sibelia-3.0.7+dfsg/src/vertexenumeration.cpp [ 95%] Building CXX object CMakeFiles/Sibelia.dir/resource.cpp.o /usr/bin/c++ -I/build/sibelia-3.0.7+dfsg/src/include -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -o CMakeFiles/Sibelia.dir/resource.cpp.o -c /build/sibelia-3.0.7+dfsg/src/resource.cpp In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/common.h:31, from /build/sibelia-3.0.7+dfsg/src/fasta.h:10, from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:10, from /build/sibelia-3.0.7+dfsg/src/stranditerator.cpp:7: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/common.h:31, from /build/sibelia-3.0.7+dfsg/src/fasta.h:10, from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:10, from /build/sibelia-3.0.7+dfsg/src/hashing.h:10, from /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:10, from /build/sibelia-3.0.7+dfsg/src/vertexenumeration.cpp:7: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/boost/bind.hpp:30, from /build/sibelia-3.0.7+dfsg/src/common.h:31, from /build/sibelia-3.0.7+dfsg/src/resource.h:6, from /build/sibelia-3.0.7+dfsg/src/resource.cpp:6: /usr/include/boost/bind.hpp:36:1: note: ‘#pragma message: The practice of declaring the Bind placeholders (_1, _2, ...) in the global namespace is deprecated. Please use + using namespace boost::placeholders, or define BOOST_BIND_GLOBAL_PLACEHOLDERS to retain the current behavior.’ 36 | BOOST_PRAGMA_MESSAGE( | ^~~~~~~~~~~~~~~~~~~~ In file included from /build/sibelia-3.0.7+dfsg/src/vertexenumeration.cpp:7: /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:37:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 37 | std::auto_ptr sequence_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /build/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-3.0.7+dfsg/src/fasta.h:10, from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:10, from /build/sibelia-3.0.7+dfsg/src/hashing.h:10, from /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:10, from /build/sibelia-3.0.7+dfsg/src/vertexenumeration.cpp:7: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ In file included from /build/sibelia-3.0.7+dfsg/src/vertexenumeration.cpp:7: /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:38:8: warning: ‘template class std::auto_ptr’ is deprecated [-Wdeprecated-declarations] 38 | std::auto_ptr bifStorage_; | ^~~~~~~~ In file included from /usr/include/c++/10/memory:83, from /build/sibelia-3.0.7+dfsg/src/common.h:20, from /build/sibelia-3.0.7+dfsg/src/fasta.h:10, from /build/sibelia-3.0.7+dfsg/src/dnasequence.h:10, from /build/sibelia-3.0.7+dfsg/src/hashing.h:10, from /build/sibelia-3.0.7+dfsg/src/indexedsequence.h:10, from /build/sibelia-3.0.7+dfsg/src/vertexenumeration.cpp:7: /usr/include/c++/10/bits/unique_ptr.h:57:28: note: declared here 57 | template class auto_ptr; | ^~~~~~~~ [100%] Linking CXX executable Sibelia /usr/bin/cmake -E cmake_link_script CMakeFiles/Sibelia.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/sibelia-3.0.7+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -DNDEBUG -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/Sibelia.dir/sibelia.cpp.o CMakeFiles/Sibelia.dir/postprocessor.cpp.o CMakeFiles/Sibelia.dir/indexedsequence.cpp.o CMakeFiles/Sibelia.dir/util.cpp.o CMakeFiles/Sibelia.dir/outputgenerator.cpp.o CMakeFiles/Sibelia.dir/blockfinder.cpp.o CMakeFiles/Sibelia.dir/blockinstance.cpp.o CMakeFiles/Sibelia.dir/bifurcationstorage.cpp.o CMakeFiles/Sibelia.dir/bulgeremoval.cpp.o CMakeFiles/Sibelia.dir/dnasequence.cpp.o CMakeFiles/Sibelia.dir/edge.cpp.o CMakeFiles/Sibelia.dir/fasta.cpp.o CMakeFiles/Sibelia.dir/serialization.cpp.o CMakeFiles/Sibelia.dir/synteny.cpp.o CMakeFiles/Sibelia.dir/test/unrolledlisttest.cpp.o CMakeFiles/Sibelia.dir/platform.cpp.o CMakeFiles/Sibelia.dir/stranditerator.cpp.o CMakeFiles/Sibelia.dir/vertexenumeration.cpp.o CMakeFiles/Sibelia.dir/resource.cpp.o -o Sibelia -ldivsufsort make[3]: Leaving directory '/build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu' [100%] Built target Sibelia make[2]: Leaving directory '/build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/sibelia-3.0.7+dfsg' dh_auto_test --no-parallel make[1]: Leaving directory '/build/sibelia-3.0.7+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--sourcedirectory=src dh_prep -O--sourcedirectory=src dh_auto_install -O--sourcedirectory=src cd obj-aarch64-linux-gnu && make -j8 install DESTDIR=/build/sibelia-3.0.7\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/sibelia-3.0.7+dfsg/src -B/build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu/CMakeFiles /build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/Sibelia.dir/build.make CMakeFiles/Sibelia.dir/depend make[3]: Entering directory '/build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu' cd /build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/sibelia-3.0.7+dfsg/src /build/sibelia-3.0.7+dfsg/src /build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu /build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu /build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu/CMakeFiles/Sibelia.dir/DependInfo.cmake --color= make[3]: Leaving directory '/build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/Sibelia.dir/build.make CMakeFiles/Sibelia.dir/build make[3]: Entering directory '/build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu' make[3]: Nothing to be done for 'CMakeFiles/Sibelia.dir/build'. make[3]: Leaving directory '/build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu' [100%] Built target Sibelia make[2]: Leaving directory '/build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/bin/Sibelia -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/NEWS.md -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/ANNOTATION.md -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/README.md -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/USAGE.md -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/INSTALL.md -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/SIBELIA.md -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/C-SIBELIA.md -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/LICENSE.txt -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/C-Sibelia -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/C-Sibelia/Staphylococcus_aureus -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/C-Sibelia/Staphylococcus_aureus/RN4220.fasta -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/C-Sibelia/Staphylococcus_aureus/README.txt -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/C-Sibelia/Staphylococcus_aureus/NCTC8325.fasta -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/C-Sibelia/Staphylococcus_aureus/variant.vcf -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/genomes_permutations.txt -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/circos -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/circos/circos.image.conf -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/circos/circos.highlight2.txt -- Installing: 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/build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/circos/circos.svg -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/circos/circos.conf -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/coverage_report.txt -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/Helicobacter_pylori.fasta -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/blocks_coords.txt -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/README.txt -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Helicobacter_pylori/d3_blocks_diagram.html -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/genomes_permutations.txt -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/circos -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/circos/circos.image.conf -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/circos/circos.sequences.txt -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/circos/circos.highlight.txt -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/circos/circos.png -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/circos/circos.segdup.txt -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/circos/circos.svg -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/circos/circos.conf -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/coverage_report.txt -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/blocks_coords.txt -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/README.txt -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/Staphylococcus.fasta -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/doc/examples/Sibelia/Staphylococcus_aureus/d3_blocks_diagram.html -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/bin/C-Sibelia.py -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/utils -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/utils/hidemappedcontigs.py -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/share/Sibelia/utils/sortsequences.py -- Installing: /build/sibelia-3.0.7+dfsg/debian/tmp/usr/lib/Sibelia make[1]: Leaving directory '/build/sibelia-3.0.7+dfsg/obj-aarch64-linux-gnu' debian/rules override_dh_install make[1]: Entering directory '/build/sibelia-3.0.7+dfsg' dh_install find debian -name LICENSE.txt -delete find debian -name INSTALL.md -delete make[1]: Leaving directory '/build/sibelia-3.0.7+dfsg' dh_installdocs -O--sourcedirectory=src dh_installchangelogs -O--sourcedirectory=src debian/rules override_dh_installman-arch make[1]: Entering directory '/build/sibelia-3.0.7+dfsg' dh_installman -a mv debian/sibelia/usr/share/man/py/man1/C-Sibelia.1 debian/sibelia/usr/share/man/man1/C-Sibelia.py.1 rm -rf debian/sibelia/usr/share/man/py make[1]: Leaving directory '/build/sibelia-3.0.7+dfsg' dh_installman -O--sourcedirectory=src -Nsibelia dh_installinit -O--sourcedirectory=src dh_installsystemduser -O--sourcedirectory=src dh_lintian -O--sourcedirectory=src dh_perl -O--sourcedirectory=src dh_link -O--sourcedirectory=src dh_strip_nondeterminism -O--sourcedirectory=src dh_compress -O--sourcedirectory=src dh_fixperms -O--sourcedirectory=src dh_missing -O--sourcedirectory=src dh_dwz -O--sourcedirectory=src dh_strip -O--sourcedirectory=src dh_makeshlibs -O--sourcedirectory=src dh_shlibdeps -O--sourcedirectory=src dh_installdeb -O--sourcedirectory=src dh_gencontrol -O--sourcedirectory=src dh_md5sums -O--sourcedirectory=src dh_builddeb -O--sourcedirectory=src dpkg-deb: building package 'sibelia-dbgsym' in '../sibelia-dbgsym_3.0.7+dfsg-3_arm64.deb'. dpkg-deb: building package 'sibelia' in '../sibelia_3.0.7+dfsg-3_arm64.deb'. dpkg-deb: building package 'sibelia-examples' in '../sibelia-examples_3.0.7+dfsg-3_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../sibelia_3.0.7+dfsg-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/20191 and its subdirectories I: Current time: Thu Jul 15 07:41:17 -12 2021 I: pbuilder-time-stamp: 1626378077 Thu Jul 15 19:41:20 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink15-arm64.debian.net. Thu Jul 15 19:41:20 UTC 2021 I: Preparing to do remote build '2' on codethink15-arm64.debian.net. Thu Jul 15 19:47:12 UTC 2021 I: Deleting $TMPDIR on codethink15-arm64.debian.net. Thu Jul 15 19:47:38 UTC 2021 I: sibelia_3.0.7+dfsg-3_arm64.changes: Format: 1.8 Date: Tue, 14 Apr 2020 10:29:51 +0200 Source: sibelia Binary: sibelia sibelia-dbgsym sibelia-examples Architecture: arm64 all Version: 3.0.7+dfsg-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: sibelia - comparative genomics tool sibelia-examples - comparative genomics tool (example data) Closes: 956575 Changes: sibelia (3.0.7+dfsg-3) unstable; urgency=medium . * Enable binary-all builds Closes: #956575 Checksums-Sha1: 18591ea1a510154efb27a85317bf63258b613717 3868144 sibelia-dbgsym_3.0.7+dfsg-3_arm64.deb 6910d07ad44ca784e4780e112119f5022c550a2d 7705612 sibelia-examples_3.0.7+dfsg-3_all.deb ef401c95eea26aed25739458f902ddfa90a1e4a8 6340 sibelia_3.0.7+dfsg-3_arm64.buildinfo 776209c1306f299a8aacd674c1cdaa1ba618414e 282512 sibelia_3.0.7+dfsg-3_arm64.deb Checksums-Sha256: 71bbf6244959a5fe73d8b327e64305fc65fa6033f4d1ac70f78d01f34a330c35 3868144 sibelia-dbgsym_3.0.7+dfsg-3_arm64.deb ed55a9283215883a68a97db2a0bafbe66469dc7c04efcdd058f5fdd8bf3f552d 7705612 sibelia-examples_3.0.7+dfsg-3_all.deb 82314d45c3fab68b5fbf407207b450f0f02376ac88ec775442cbbfe723e770c1 6340 sibelia_3.0.7+dfsg-3_arm64.buildinfo cd50f3cc930ccd27aae700560208b9cf8851fc1205d4768036927d63d382895f 282512 sibelia_3.0.7+dfsg-3_arm64.deb Files: 4d6e78a3c6dde64c36464eec5f05854c 3868144 debug optional sibelia-dbgsym_3.0.7+dfsg-3_arm64.deb af013bdeedc478be276de7f9ca2cef99 7705612 science optional sibelia-examples_3.0.7+dfsg-3_all.deb 8972edbdb98b6b6625cdffda5f9e5a6d 6340 science optional sibelia_3.0.7+dfsg-3_arm64.buildinfo eddaeb7668b4c5d12c4066bf4e66b2a5 282512 science optional sibelia_3.0.7+dfsg-3_arm64.deb Thu Jul 15 19:47:39 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.RuH7658A8j/sibelia_3.0.7+dfsg-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.RuH7658A8j/sibelia_3.0.7+dfsg-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.RuH7658A8j/sibelia_3.0.7+dfsg-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.RuH7658A8j/b1/sibelia_3.0.7+dfsg-3_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.RuH7658A8j/b2/sibelia_3.0.7+dfsg-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.346s) 0.346s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.120s) 0.120s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Thu Jul 15 19:47:41 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Thu Jul 15 19:47:41 UTC 2021 I: sibelia from bullseye built successfully and reproducibly on arm64. Thu Jul 15 19:47:42 UTC 2021 I: Submitting .buildinfo files to external archives: Thu Jul 15 19:47:42 UTC 2021 I: Submitting 8.0K b1/sibelia_3.0.7+dfsg-3_arm64.buildinfo.asc Thu Jul 15 19:47:43 UTC 2021 I: Submitting 8.0K b2/sibelia_3.0.7+dfsg-3_arm64.buildinfo.asc Thu Jul 15 19:47:45 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Jul 15 19:47:45 UTC 2021 I: Done submitting .buildinfo files. Thu Jul 15 19:47:45 UTC 2021 I: Removing signed sibelia_3.0.7+dfsg-3_arm64.buildinfo.asc files: removed './b1/sibelia_3.0.7+dfsg-3_arm64.buildinfo.asc' removed './b2/sibelia_3.0.7+dfsg-3_arm64.buildinfo.asc'