Wed Jul 28 08:30:03 UTC 2021 I: starting to build shasta/bullseye/arm64 on jenkins on '2021-07-28 08:29' Wed Jul 28 08:30:03 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_20/720/console.log Wed Jul 28 08:30:03 UTC 2021 I: Downloading source for bullseye/shasta=0.7.0-3 --2021-07-28 08:30:03-- http://cdn-fastly.deb.debian.org/debian/pool/main/s/shasta/shasta_0.7.0-3.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2306 (2.3K) Saving to: ‘shasta_0.7.0-3.dsc’ 0K .. 100% 169M=0s 2021-07-28 08:30:03 (169 MB/s) - ‘shasta_0.7.0-3.dsc’ saved [2306/2306] Wed Jul 28 08:30:03 UTC 2021 I: shasta_0.7.0-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: shasta Binary: shasta, python3-shasta, python3-shasta-doc Architecture: any-amd64 arm64 all Version: 0.7.0-3 Maintainer: Debian Med Packaging Team Uploaders: Shayan Doust Homepage: https://github.com/chanzuckerberg/shasta Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/shasta Vcs-Git: https://salsa.debian.org/med-team/shasta.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, dh-exec, cmake, patchelf, chrpath, libboost-all-dev, libpng-dev, ncbi-blast+, python3-sphinx, python3-dev, libseqan2-dev, libspoa-dev, python3-pybind11, libcpu-features-dev [any-amd64], libcereal-dev Package-List: python3-shasta deb python optional arch=any-amd64,arm64 python3-shasta-doc deb doc optional arch=all shasta deb science optional arch=any-amd64,arm64 Checksums-Sha1: 4fc61f21c1723f3c4a62aaf6d00261b7f796f071 3475074 shasta_0.7.0.orig.tar.gz 17fddd01b4accda8a1f38378c893d256a4ab970d 11216 shasta_0.7.0-3.debian.tar.xz Checksums-Sha256: 8499495881599febcebf3119e62073ec84efd4e1c28ab0c5ffd08098e0a6b4b6 3475074 shasta_0.7.0.orig.tar.gz fa359272669c472d6fb4cd7e0fd0591fc8c4936f98143f3b840ef96b6a3a3963 11216 shasta_0.7.0-3.debian.tar.xz Files: 8da1ba2163668f895405c4f07e4fc860 3475074 shasta_0.7.0.orig.tar.gz 9e319eb5cb820b8262adab77bbe7bbc0 11216 shasta_0.7.0-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAl/+wMoACgkQPCZ2P2xn 5uKMjxAAnW4EaVr/f0Tq0FCIJQLH7iXlIbz8rt//f/Uo+g1BKPXD+De65dqzotvI 8+9lhB7FLbcZtSkD3WxrQIC2/mN+o+4ry8Q4VykS3P1cy8I54hEyyHuqC4o8FHuU +PsW29URAWkk9ELOoWgFDvrvFE9zB7/wM7YWiSaOKp/Yx3VbQtlC8b3SvhY/RJqF UycqCwd7bMBCdIvS9ktXM+UZpgoYlCoccAji6t2LbsaCu1Rr3pPZSu8WGOUc6Ufs 1k730XkAPpmkyGZ3OfNjK2ZzV2oPddZl8cQNuUL7I7faNhjOJ1gtOi3L7hFV0fNI Cu1O/HexOQ80ZfJZ44zP/20BxlzZH398HC8xeTrDxX6GhY4bX2w0fTZ4w8nrHQwM 2zf4uH955w9sMZ497VdE3hRllqh9rZf5rlzOCSebgERY5gRAglTIRc1Mw4S0YYUU jH13zBCK/Sa0umNgJTBUoSHL/WIXGEXJHuA1ENu7N5GqV4jQ5Se8SUhOCkL9iWsr jfI70HPihTqrGubE6CZbtmqD22oUZ0GLIKVqqWOskzsDXuB/6lUcyo+a68RlWLkL XfcyUUnetcg4VT01JwBTY1DsZUHf/yUAKtbFJJDehgGlQwj46LPydt3I877SIp2O 1owk/XJ231Fa+UjuAtQN2KTmHjwgsjsabSreG9CIipJn5rklbaA= =49Bs -----END PGP SIGNATURE----- Wed Jul 28 08:30:03 UTC 2021 I: Checking whether the package is not for us Wed Jul 28 08:30:03 UTC 2021 I: Starting 1st build on remote node codethink13-arm64.debian.net. Wed Jul 28 08:30:03 UTC 2021 I: Preparing to do remote build '1' on codethink13-arm64.debian.net. Wed Jul 28 08:59:25 UTC 2021 I: Deleting $TMPDIR on codethink13-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Aug 30 02:53:10 -12 2022 I: pbuilder-time-stamp: 1661871190 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [shasta_0.7.0-3.dsc] I: copying [./shasta_0.7.0.orig.tar.gz] I: copying [./shasta_0.7.0-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.trogo00y/trustedkeys.kbx': General error gpgv: Signature made Tue Jan 12 21:43:38 2021 -12 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./shasta_0.7.0-3.dsc dpkg-source: info: extracting shasta in shasta-0.7.0 dpkg-source: info: unpacking shasta_0.7.0.orig.tar.gz dpkg-source: info: unpacking shasta_0.7.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying libspoa7.0.0 dpkg-source: info: applying spelling dpkg-source: info: applying modify_cmakelists.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/11742/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='11742' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.ro2MXGpBbE/pbuilderrc_qqLV --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.ro2MXGpBbE/b1 --logfile b1/build.log shasta_0.7.0-3.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink13-arm64 4.15.0-151-generic #157-Ubuntu SMP Fri Jul 9 21:03:48 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Jun 21 2021 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Feb 7 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Feb 7 2021 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Feb 7 2021 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Feb 7 2021 more -rwsr-xr-x 1 root root 51360 Feb 7 2021 mount -rwxr-xr-x 1 root root 14496 Feb 7 2021 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 2021 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 29 03:47 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Feb 7 2021 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Feb 7 2021 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Feb 7 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/11742/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, dh-exec, cmake, patchelf, chrpath, libboost-all-dev, libpng-dev, ncbi-blast+, python3-sphinx, python3-dev, libseqan2-dev, libspoa-dev, python3-pybind11, libcereal-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on dh-exec; however: Package dh-exec is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on patchelf; however: Package patchelf is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. pbuilder-satisfydepends-dummy depends on libboost-all-dev; however: Package libboost-all-dev is not installed. pbuilder-satisfydepends-dummy depends on libpng-dev; however: Package libpng-dev is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev; however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-pybind11; however: Package python3-pybind11 is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} chrpath{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-exec{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} gettext{a} gettext-base{a} gfortran-10{a} groff-base{a} ibverbs-providers{a} icu-devtools{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13{a} libboost-all-dev{a} libboost-atomic-dev{a} libboost-atomic1.74-dev{a} libboost-atomic1.74.0{a} libboost-chrono-dev{a} libboost-chrono1.74-dev{a} libboost-chrono1.74.0{a} libboost-container-dev{a} libboost-container1.74-dev{a} libboost-container1.74.0{a} libboost-context-dev{a} libboost-context1.74-dev{a} libboost-context1.74.0{a} libboost-coroutine-dev{a} libboost-coroutine1.74-dev{a} libboost-coroutine1.74.0{a} libboost-date-time-dev{a} libboost-date-time1.74-dev{a} libboost-date-time1.74.0{a} libboost-dev{a} libboost-exception-dev{a} libboost-exception1.74-dev{a} libboost-fiber-dev{a} libboost-fiber1.74-dev{a} libboost-fiber1.74.0{a} libboost-filesystem-dev{a} libboost-filesystem1.74-dev{a} libboost-filesystem1.74.0{a} libboost-graph-dev{a} libboost-graph-parallel-dev{a} libboost-graph-parallel1.74-dev{a} libboost-graph-parallel1.74.0{a} libboost-graph1.74-dev{a} libboost-graph1.74.0{a} libboost-iostreams-dev{a} libboost-iostreams1.74-dev{a} libboost-locale-dev{a} libboost-locale1.74-dev{a} libboost-locale1.74.0{a} libboost-log-dev{a} libboost-log1.74-dev{a} libboost-log1.74.0{a} libboost-math-dev{a} libboost-math1.74-dev{a} libboost-math1.74.0{a} libboost-mpi-dev{a} libboost-mpi-python-dev{a} libboost-mpi-python1.74-dev{a} libboost-mpi-python1.74.0{a} libboost-mpi1.74-dev{a} libboost-mpi1.74.0{a} libboost-nowide-dev{a} libboost-nowide1.74-dev{a} libboost-nowide1.74.0{a} libboost-numpy-dev{a} libboost-numpy1.74-dev{a} libboost-numpy1.74.0{a} libboost-program-options-dev{a} libboost-program-options1.74-dev{a} libboost-program-options1.74.0{a} libboost-python-dev{a} libboost-python1.74-dev{a} libboost-python1.74.0{a} libboost-random-dev{a} libboost-random1.74-dev{a} libboost-random1.74.0{a} libboost-regex-dev{a} libboost-regex1.74-dev{a} libboost-regex1.74.0{a} libboost-serialization-dev{a} libboost-serialization1.74-dev{a} libboost-serialization1.74.0{a} libboost-stacktrace-dev{a} libboost-stacktrace1.74-dev{a} libboost-stacktrace1.74.0{a} libboost-system-dev{a} libboost-system1.74-dev{a} libboost-system1.74.0{a} libboost-test-dev{a} libboost-test1.74-dev{a} libboost-test1.74.0{a} libboost-thread-dev{a} libboost-thread1.74-dev{a} libboost-thread1.74.0{a} libboost-timer-dev{a} libboost-timer1.74-dev{a} libboost-timer1.74.0{a} libboost-tools-dev{a} libboost-type-erasure-dev{a} libboost-type-erasure1.74-dev{a} libboost-type-erasure1.74.0{a} libboost-wave-dev{a} libboost-wave1.74-dev{a} libboost-wave1.74.0{a} libboost1.74-dev{a} libboost1.74-tools-dev{a} libbrotli1{a} libbsd0{a} libcbor0{a} libcereal-dev{a} libcurl4{a} libdebhelper-perl{a} libedit2{a} libelf1{a} libevent-2.1-7{a} libevent-core-2.1-7{a} libevent-dev{a} libevent-extra-2.1-7{a} libevent-openssl-2.1-7{a} libevent-pthreads-2.1-7{a} libexpat1{a} libexpat1-dev{a} libfabric1{a} libfido2-1{a} libfile-stripnondeterminism-perl{a} libgfortran-10-dev{a} libgfortran5{a} libhwloc-dev{a} libhwloc-plugins{a} libhwloc15{a} libibverbs-dev{a} libibverbs1{a} libicu-dev{a} libicu67{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libjsoncpp24{a} libldap-2.4-2{a} liblmdb0{a} libltdl-dev{a} libltdl7{a} libmagic-mgc{a} libmagic1{a} libmbedcrypto3{a} libmbedtls12{a} libmbedx509-0{a} libmd0{a} libmpdec3{a} libncurses6{a} libnghttp2-14{a} libnl-3-200{a} libnl-3-dev{a} libnl-route-3-200{a} libnl-route-3-dev{a} libnuma-dev{a} libnuma1{a} libopenmpi-dev{a} libopenmpi3{a} libpciaccess0{a} libpipeline1{a} libpmix-dev{a} libpmix2{a} libpng-dev{a} libpng16-16{a} libprocps8{a} libpsl5{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.9{a} libpython3.9-dev{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} librdmacm1{a} libreadline8{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libsigsegv2{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libucx0{a} libuv1{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxml2{a} libxnvctrl0{a} m4{a} man-db{a} media-types{a} mpi-default-bin{a} mpi-default-dev{a} ncbi-blast+{a} ncbi-data{a} ocl-icd-libopencl1{a} openmpi-bin{a} openmpi-common{a} openssh-client{a} openssl{a} patchelf{a} po-debconf{a} procps{a} pybind11-dev{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-dev{a} python3-distutils{a} python3-docutils{a} python3-idna{a} python3-imagesize{a} python3-jinja2{a} python3-lib2to3{a} python3-markupsafe{a} python3-minimal{a} python3-packaging{a} python3-pkg-resources{a} python3-pybind11{a} python3-pygments{a} python3-pyparsing{a} python3-requests{a} python3-roman{a} python3-six{a} python3-snowballstemmer{a} python3-sphinx{a} python3-tz{a} python3-urllib3{a} python3.9{a} python3.9-dev{a} python3.9-minimal{a} rapidjson-dev{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common libarchive-cpio-perl libcoarrays-openmpi-dev libeigen3-dev libgpm2 libldap-common libmail-sendmail-perl libpaper-utils libpng-tools libsasl2-modules lynx psmisc publicsuffix python3-numpy python3-pil wget xauth 0 packages upgraded, 267 newly installed, 0 to remove and 0 not upgraded. Need to get 126 MB of archives. After unpacking 742 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-minimal arm64 3.9.2-1 [797 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 python3.9-minimal arm64 3.9.2-1 [1884 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 python3-minimal arm64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libmpdec3 arm64 2.5.1-1 [84.4 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 libreadline8 arm64 8.1-1 [160 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-stdlib arm64 3.9.2-1 [1658 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 python3.9 arm64 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 libpython3-stdlib arm64 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 python3 arm64 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 sgml-base all 1.30 [15.1 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 libncurses6 arm64 6.2+20201114-2 [93.2 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 libprocps8 arm64 2:3.3.17-5 [61.9 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 procps arm64 2:3.3.17-5 [497 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 openssl arm64 1.1.1k-1 [829 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 ca-certificates all 20210119 [158 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 libmd0 arm64 1.0.3-3 [27.9 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 libbsd0 arm64 0.11.3-1 [106 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 libedit2 arm64 3.1-20191231-2+b1 [92.1 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libcbor0 arm64 0.5.0+dfsg-2 [20.1 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 libfido2-1 arm64 1.6.0-2 [50.2 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 openssh-client arm64 1:8.4p1-5 [892 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 chrpath arm64 0.16-2+b1 [16.0 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 cmake-data all 3.18.4-2 [1725 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 libarchive13 arm64 3.4.3-2+b1 [320 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1 [69.3 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1 [105 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-3 [222 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libssh2-1 arm64 1.9.0-2 [150 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libcurl4 arm64 7.74.0-1.3+b1 [321 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libjsoncpp24 arm64 1.9.4-4 [72.5 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 librhash0 arm64 1.4.1-2 [127 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libuv1 arm64 1.40.0-2 [126 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 cmake arm64 3.18.4-2 [3673 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 67 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 68 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 69 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 70 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 71 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 72 http://deb.debian.org/debian bullseye/main arm64 dh-exec arm64 0.23.2 [26.2 kB] Get: 73 http://deb.debian.org/debian bullseye/main arm64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 74 http://deb.debian.org/debian bullseye/main arm64 python3-distutils all 3.9.2-1 [143 kB] Get: 75 http://deb.debian.org/debian bullseye/main arm64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 76 http://deb.debian.org/debian bullseye/main arm64 xml-core all 0.18+nmu1 [23.8 kB] Get: 77 http://deb.debian.org/debian bullseye/main arm64 docutils-common all 0.16+dfsg-4 [129 kB] Get: 78 http://deb.debian.org/debian bullseye/main arm64 libgfortran5 arm64 10.2.1-6 [333 kB] Get: 79 http://deb.debian.org/debian bullseye/main arm64 libgfortran-10-dev arm64 10.2.1-6 [388 kB] Get: 80 http://deb.debian.org/debian bullseye/main arm64 gfortran-10 arm64 10.2.1-6 [8654 kB] Get: 81 http://deb.debian.org/debian bullseye/main arm64 libnl-3-200 arm64 3.4.0-1+b1 [60.6 kB] Get: 82 http://deb.debian.org/debian bullseye/main arm64 libnl-route-3-200 arm64 3.4.0-1+b1 [149 kB] Get: 83 http://deb.debian.org/debian bullseye/main arm64 libibverbs1 arm64 33.2-1 [56.1 kB] Get: 84 http://deb.debian.org/debian bullseye/main arm64 ibverbs-providers arm64 33.2-1 [235 kB] Get: 85 http://deb.debian.org/debian bullseye/main arm64 icu-devtools arm64 67.1-7 [189 kB] Get: 86 http://deb.debian.org/debian bullseye/main arm64 libboost1.74-dev arm64 1.74.0-9 [9534 kB] Get: 87 http://deb.debian.org/debian bullseye/main arm64 libboost-dev arm64 1.74.0.3 [4548 B] Get: 88 http://deb.debian.org/debian bullseye/main arm64 libboost1.74-tools-dev arm64 1.74.0-9 [1362 kB] Get: 89 http://deb.debian.org/debian bullseye/main arm64 libboost-tools-dev arm64 1.74.0.3 [4508 B] Get: 90 http://deb.debian.org/debian bullseye/main arm64 libboost-atomic1.74.0 arm64 1.74.0-9 [244 kB] Get: 91 http://deb.debian.org/debian bullseye/main arm64 libboost-atomic1.74-dev arm64 1.74.0-9 [245 kB] Get: 92 http://deb.debian.org/debian bullseye/main arm64 libboost-atomic-dev arm64 1.74.0.3 [4640 B] Get: 93 http://deb.debian.org/debian bullseye/main arm64 libboost-chrono1.74.0 arm64 1.74.0-9 [251 kB] Get: 94 http://deb.debian.org/debian bullseye/main arm64 libboost-chrono1.74-dev arm64 1.74.0-9 [260 kB] Get: 95 http://deb.debian.org/debian bullseye/main arm64 libboost-chrono-dev arm64 1.74.0.3 [4960 B] Get: 96 http://deb.debian.org/debian bullseye/main arm64 libboost-container1.74.0 arm64 1.74.0-9 [269 kB] Get: 97 http://deb.debian.org/debian bullseye/main arm64 libboost-container1.74-dev arm64 1.74.0-9 [275 kB] Get: 98 http://deb.debian.org/debian bullseye/main arm64 libboost-container-dev arm64 1.74.0.3 [4812 B] Get: 99 http://deb.debian.org/debian bullseye/main arm64 libboost-date-time1.74.0 arm64 1.74.0-9 [241 kB] Get: 100 http://deb.debian.org/debian bullseye/main arm64 libboost-serialization1.74.0 arm64 1.74.0-9 [331 kB] Get: 101 http://deb.debian.org/debian bullseye/main arm64 libboost-serialization1.74-dev arm64 1.74.0-9 [381 kB] Get: 102 http://deb.debian.org/debian bullseye/main arm64 libboost-date-time1.74-dev arm64 1.74.0-9 [250 kB] Get: 103 http://deb.debian.org/debian bullseye/main arm64 libboost-system1.74.0 arm64 1.74.0-9 [242 kB] Get: 104 http://deb.debian.org/debian bullseye/main arm64 libboost-system1.74-dev arm64 1.74.0-9 [243 kB] Get: 105 http://deb.debian.org/debian bullseye/main arm64 libboost-thread1.74.0 arm64 1.74.0-9 [276 kB] Get: 106 http://deb.debian.org/debian bullseye/main arm64 libboost-thread1.74-dev arm64 1.74.0-9 [291 kB] Get: 107 http://deb.debian.org/debian bullseye/main arm64 libboost-context1.74.0 arm64 1.74.0-9 [243 kB] Get: 108 http://deb.debian.org/debian bullseye/main arm64 libboost-context1.74-dev arm64 1.74.0-9 [244 kB] Get: 109 http://deb.debian.org/debian bullseye/main arm64 libboost-context-dev arm64 1.74.0.3 [4540 B] Get: 110 http://deb.debian.org/debian bullseye/main arm64 libboost-coroutine1.74.0 arm64 1.74.0-9 [257 kB] Get: 111 http://deb.debian.org/debian bullseye/main arm64 libboost-coroutine1.74-dev arm64 1.74.0-9 [266 kB] Get: 112 http://deb.debian.org/debian bullseye/main arm64 libboost-coroutine-dev arm64 1.74.0.3 [4608 B] Get: 113 http://deb.debian.org/debian bullseye/main arm64 libboost-date-time-dev arm64 1.74.0.3 [4332 B] Get: 114 http://deb.debian.org/debian bullseye/main arm64 libboost-exception1.74-dev arm64 1.74.0-9 [241 kB] Get: 115 http://deb.debian.org/debian bullseye/main arm64 libboost-exception-dev arm64 1.74.0.3 [4320 B] Get: 116 http://deb.debian.org/debian bullseye/main arm64 libboost-filesystem1.74.0 arm64 1.74.0-9 [278 kB] Get: 117 http://deb.debian.org/debian bullseye/main arm64 libboost-filesystem1.74-dev arm64 1.74.0-9 [303 kB] Get: 118 http://deb.debian.org/debian bullseye/main arm64 libboost-fiber1.74.0 arm64 1.74.0-9 [263 kB] Get: 119 http://deb.debian.org/debian bullseye/main arm64 libboost-fiber1.74-dev arm64 1.74.0-9 [276 kB] Get: 120 http://deb.debian.org/debian bullseye/main arm64 libboost-fiber-dev arm64 1.74.0.3 [4760 B] Get: 121 http://deb.debian.org/debian bullseye/main arm64 libboost-filesystem-dev arm64 1.74.0.3 [4368 B] Get: 122 http://deb.debian.org/debian bullseye/main arm64 libboost-regex1.74.0 arm64 1.74.0-9 [473 kB] Get: 123 http://deb.debian.org/debian bullseye/main arm64 libboost-graph1.74.0 arm64 1.74.0-9 [317 kB] Get: 124 http://deb.debian.org/debian bullseye/main arm64 libicu-dev arm64 67.1-7 [9468 kB] Get: 125 http://deb.debian.org/debian bullseye/main arm64 libboost-regex1.74-dev arm64 1.74.0-9 [549 kB] Get: 126 http://deb.debian.org/debian bullseye/main arm64 libboost-test1.74.0 arm64 1.74.0-9 [445 kB] Get: 127 http://deb.debian.org/debian bullseye/main arm64 libboost-test1.74-dev arm64 1.74.0-9 [537 kB] Get: 128 http://deb.debian.org/debian bullseye/main arm64 libboost-graph1.74-dev arm64 1.74.0-9 [342 kB] Get: 129 http://deb.debian.org/debian bullseye/main arm64 libboost-graph-dev arm64 1.74.0.3 [4436 B] Get: 130 http://deb.debian.org/debian bullseye/main arm64 libevent-core-2.1-7 arm64 2.1.12-stable-1 [132 kB] Get: 131 http://deb.debian.org/debian bullseye/main arm64 libevent-pthreads-2.1-7 arm64 2.1.12-stable-1 [57.2 kB] Get: 132 http://deb.debian.org/debian bullseye/main arm64 librdmacm1 arm64 33.2-1 [65.3 kB] Get: 133 http://deb.debian.org/debian bullseye/main arm64 libfabric1 arm64 1.11.0-2 [389 kB] Get: 134 http://deb.debian.org/debian bullseye/main arm64 libhwloc15 arm64 2.4.1+dfsg-1 [131 kB] Get: 135 http://deb.debian.org/debian bullseye/main arm64 libpciaccess0 arm64 0.16-1 [52.9 kB] Get: 136 http://deb.debian.org/debian bullseye/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 137 http://deb.debian.org/debian bullseye/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 138 http://deb.debian.org/debian bullseye/main arm64 libxcb1 arm64 1.14-3 [138 kB] Get: 139 http://deb.debian.org/debian bullseye/main arm64 libx11-data all 2:1.7.1-1 [310 kB] Get: 140 http://deb.debian.org/debian bullseye/main arm64 libx11-6 arm64 2:1.7.1-1 [747 kB] Get: 141 http://deb.debian.org/debian bullseye/main arm64 libxext6 arm64 2:1.3.3-1.1 [51.6 kB] Get: 142 http://deb.debian.org/debian bullseye/main arm64 libxnvctrl0 arm64 460.73.01-1 [26.7 kB] Get: 143 http://deb.debian.org/debian bullseye/main arm64 ocl-icd-libopencl1 arm64 2.2.14-2 [41.5 kB] Get: 144 http://deb.debian.org/debian bullseye/main arm64 libhwloc-plugins arm64 2.4.1+dfsg-1 [21.1 kB] Get: 145 http://deb.debian.org/debian bullseye/main arm64 libpmix2 arm64 4.0.0-4 [513 kB] Get: 146 http://deb.debian.org/debian bullseye/main arm64 libnuma1 arm64 2.0.12-1+b1 [25.8 kB] Get: 147 http://deb.debian.org/debian bullseye/main arm64 libucx0 arm64 1.10.1~rc1+really.1.10.0-1 [567 kB] Get: 148 http://deb.debian.org/debian bullseye/main arm64 libopenmpi3 arm64 4.1.0-10 [2152 kB] Get: 149 http://deb.debian.org/debian bullseye/main arm64 libboost-mpi1.74.0 arm64 1.74.0-9 [277 kB] Get: 150 http://deb.debian.org/debian bullseye/main arm64 libboost-graph-parallel1.74.0 arm64 1.74.0-9 [286 kB] Get: 151 http://deb.debian.org/debian bullseye/main arm64 libboost-graph-parallel1.74-dev arm64 1.74.0-9 [294 kB] Get: 152 http://deb.debian.org/debian bullseye/main arm64 libboost-graph-parallel-dev arm64 1.74.0.3 [4460 B] Get: 153 http://deb.debian.org/debian bullseye/main arm64 libboost-iostreams1.74-dev arm64 1.74.0-9 [272 kB] Get: 154 http://deb.debian.org/debian bullseye/main arm64 libboost-iostreams-dev arm64 1.74.0.3 [4316 B] Get: 155 http://deb.debian.org/debian bullseye/main arm64 libboost-locale1.74.0 arm64 1.74.0-9 [446 kB] Get: 156 http://deb.debian.org/debian bullseye/main arm64 libboost-locale1.74-dev arm64 1.74.0-9 [567 kB] Get: 157 http://deb.debian.org/debian bullseye/main arm64 libboost-locale-dev arm64 1.74.0.3 [4660 B] Get: 158 http://deb.debian.org/debian bullseye/main arm64 libboost-log1.74.0 arm64 1.74.0-9 [571 kB] Get: 159 http://deb.debian.org/debian bullseye/main arm64 libboost-log1.74-dev arm64 1.74.0-9 [801 kB] Get: 160 http://deb.debian.org/debian bullseye/main arm64 libboost-log-dev arm64 1.74.0.3 [4540 B] Get: 161 http://deb.debian.org/debian bullseye/main arm64 libboost-math1.74.0 arm64 1.74.0-9 [490 kB] Get: 162 http://deb.debian.org/debian bullseye/main arm64 libboost-math1.74-dev arm64 1.74.0-9 [581 kB] Get: 163 http://deb.debian.org/debian bullseye/main arm64 libboost-math-dev arm64 1.74.0.3 [4532 B] Get: 164 http://deb.debian.org/debian bullseye/main arm64 openmpi-common all 4.1.0-10 [179 kB] Get: 165 http://deb.debian.org/debian bullseye/main arm64 libnl-3-dev arm64 3.4.0-1+b1 [104 kB] Get: 166 http://deb.debian.org/debian bullseye/main arm64 libnl-route-3-dev arm64 3.4.0-1+b1 [176 kB] Get: 167 http://deb.debian.org/debian bullseye/main arm64 libibverbs-dev arm64 33.2-1 [480 kB] Get: 168 http://deb.debian.org/debian bullseye/main arm64 libnuma-dev arm64 2.0.12-1+b1 [40.2 kB] Get: 169 http://deb.debian.org/debian bullseye/main arm64 libltdl7 arm64 2.4.6-15 [390 kB] Get: 170 http://deb.debian.org/debian bullseye/main arm64 libltdl-dev arm64 2.4.6-15 [162 kB] Get: 171 http://deb.debian.org/debian bullseye/main arm64 libhwloc-dev arm64 2.4.1+dfsg-1 [217 kB] Get: 172 http://deb.debian.org/debian bullseye/main arm64 libevent-2.1-7 arm64 2.1.12-stable-1 [176 kB] Get: 173 http://deb.debian.org/debian bullseye/main arm64 libevent-extra-2.1-7 arm64 2.1.12-stable-1 [105 kB] Get: 174 http://deb.debian.org/debian bullseye/main arm64 libevent-openssl-2.1-7 arm64 2.1.12-stable-1 [63.1 kB] Get: 175 http://deb.debian.org/debian bullseye/main arm64 libevent-dev arm64 2.1.12-stable-1 [309 kB] Get: 176 http://deb.debian.org/debian bullseye/main arm64 libpmix-dev arm64 4.0.0-4 [667 kB] Get: 177 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery all 3.5.1+dfsg+~3.5.5-7 [315 kB] Get: 178 http://deb.debian.org/debian bullseye/main arm64 libjs-jquery-ui all 1.12.1+dfsg-8 [232 kB] Get: 179 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Get: 180 http://deb.debian.org/debian bullseye/main arm64 openmpi-bin arm64 4.1.0-10 [237 kB] Get: 181 http://deb.debian.org/debian bullseye/main arm64 libopenmpi-dev arm64 4.1.0-10 [1192 kB] Get: 182 http://deb.debian.org/debian bullseye/main arm64 mpi-default-dev arm64 1.13 [5476 B] Get: 183 http://deb.debian.org/debian bullseye/main arm64 libboost-mpi1.74-dev arm64 1.74.0-9 [303 kB] Get: 184 http://deb.debian.org/debian bullseye/main arm64 libboost-mpi-dev arm64 1.74.0.3 [4420 B] Get: 185 http://deb.debian.org/debian bullseye/main arm64 libboost-python1.74.0 arm64 1.74.0-9 [305 kB] Get: 186 http://deb.debian.org/debian bullseye/main arm64 mpi-default-bin arm64 1.13 [4672 B] Get: 187 http://deb.debian.org/debian bullseye/main arm64 libboost-mpi-python1.74.0 arm64 1.74.0-9 [247 kB] Get: 188 http://deb.debian.org/debian bullseye/main arm64 libboost-mpi-python1.74-dev arm64 1.74.0-9 [248 kB] Get: 189 http://deb.debian.org/debian bullseye/main arm64 libboost-mpi-python-dev arm64 1.74.0.3 [4456 B] Get: 190 http://deb.debian.org/debian bullseye/main arm64 libboost-numpy1.74.0 arm64 1.74.0-9 [251 kB] Get: 191 http://deb.debian.org/debian bullseye/main arm64 libboost-numpy1.74-dev arm64 1.74.0-9 [256 kB] Get: 192 http://deb.debian.org/debian bullseye/main arm64 libboost-numpy-dev arm64 1.74.0.3 [4376 B] Get: 193 http://deb.debian.org/debian bullseye/main arm64 libboost-program-options1.74.0 arm64 1.74.0-9 [344 kB] Get: 194 http://deb.debian.org/debian bullseye/main arm64 libboost-program-options1.74-dev arm64 1.74.0-9 [382 kB] Get: 195 http://deb.debian.org/debian bullseye/main arm64 libboost-program-options-dev arm64 1.74.0.3 [4340 B] Get: 196 http://deb.debian.org/debian bullseye/main arm64 libpython3.9 arm64 3.9.2-1 [1556 kB] Get: 197 http://deb.debian.org/debian bullseye/main arm64 libexpat1-dev arm64 2.2.10-2 [126 kB] Get: 198 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-dev arm64 3.9.2-1 [3835 kB] Get: 199 http://deb.debian.org/debian bullseye/main arm64 libpython3-dev arm64 3.9.2-3 [21.7 kB] Get: 200 http://deb.debian.org/debian bullseye/main arm64 python3.9-dev arm64 3.9.2-1 [515 kB] Get: 201 http://deb.debian.org/debian bullseye/main arm64 libjs-underscore all 1.9.1~dfsg-3 [100 kB] Get: 202 http://deb.debian.org/debian bullseye/main arm64 libjs-sphinxdoc all 3.4.3-2 [127 kB] Get: 203 http://deb.debian.org/debian bullseye/main arm64 python3-dev arm64 3.9.2-3 [24.8 kB] Get: 204 http://deb.debian.org/debian bullseye/main arm64 libboost-python1.74-dev arm64 1.74.0-9 [331 kB] Get: 205 http://deb.debian.org/debian bullseye/main arm64 libboost-python-dev arm64 1.74.0.3 [4632 B] Get: 206 http://deb.debian.org/debian bullseye/main arm64 libboost-random1.74.0 arm64 1.74.0-9 [250 kB] Get: 207 http://deb.debian.org/debian bullseye/main arm64 libboost-random1.74-dev arm64 1.74.0-9 [254 kB] Get: 208 http://deb.debian.org/debian bullseye/main arm64 libboost-random-dev arm64 1.74.0.3 [4336 B] Get: 209 http://deb.debian.org/debian bullseye/main arm64 libboost-regex-dev arm64 1.74.0.3 [4596 B] Get: 210 http://deb.debian.org/debian bullseye/main arm64 libboost-serialization-dev arm64 1.74.0.3 [4560 B] Get: 211 http://deb.debian.org/debian bullseye/main arm64 libboost-stacktrace1.74.0 arm64 1.74.0-9 [275 kB] Get: 212 http://deb.debian.org/debian bullseye/main arm64 libboost-stacktrace1.74-dev arm64 1.74.0-9 [255 kB] Get: 213 http://deb.debian.org/debian bullseye/main arm64 libboost-stacktrace-dev arm64 1.74.0.3 [4328 B] Get: 214 http://deb.debian.org/debian bullseye/main arm64 libboost-system-dev arm64 1.74.0.3 [4468 B] Get: 215 http://deb.debian.org/debian bullseye/main arm64 libboost-test-dev arm64 1.74.0.3 [4368 B] Get: 216 http://deb.debian.org/debian bullseye/main arm64 libboost-thread-dev arm64 1.74.0.3 [4356 B] Get: 217 http://deb.debian.org/debian bullseye/main arm64 libboost-timer1.74.0 arm64 1.74.0-9 [250 kB] Get: 218 http://deb.debian.org/debian bullseye/main arm64 libboost-timer1.74-dev arm64 1.74.0-9 [254 kB] Get: 219 http://deb.debian.org/debian bullseye/main arm64 libboost-timer-dev arm64 1.74.0.3 [4456 B] Get: 220 http://deb.debian.org/debian bullseye/main arm64 libboost-type-erasure1.74.0 arm64 1.74.0-9 [255 kB] Get: 221 http://deb.debian.org/debian bullseye/main arm64 libboost-type-erasure1.74-dev arm64 1.74.0-9 [261 kB] Get: 222 http://deb.debian.org/debian bullseye/main arm64 libboost-type-erasure-dev arm64 1.74.0.3 [4428 B] Get: 223 http://deb.debian.org/debian bullseye/main arm64 libboost-wave1.74.0 arm64 1.74.0-9 [414 kB] Get: 224 http://deb.debian.org/debian bullseye/main arm64 libboost-wave1.74-dev arm64 1.74.0-9 [490 kB] Get: 225 http://deb.debian.org/debian bullseye/main arm64 libboost-wave-dev arm64 1.74.0.3 [4360 B] Get: 226 http://deb.debian.org/debian bullseye/main arm64 libboost-nowide1.74.0 arm64 1.74.0-9 [243 kB] Get: 227 http://deb.debian.org/debian bullseye/main arm64 libboost-nowide1.74-dev arm64 1.74.0-9 [244 kB] Get: 228 http://deb.debian.org/debian bullseye/main arm64 libboost-nowide-dev arm64 1.74.0.3 [4392 B] Get: 229 http://deb.debian.org/debian bullseye/main arm64 libboost-all-dev arm64 1.74.0.3 [4680 B] Get: 230 http://deb.debian.org/debian bullseye/main arm64 rapidjson-dev all 1.1.0+dfsg2-7 [98.9 kB] Get: 231 http://deb.debian.org/debian bullseye/main arm64 libcereal-dev all 1.3.0+dfsg-1 [210 kB] Get: 232 http://deb.debian.org/debian bullseye/main arm64 liblmdb0 arm64 0.9.24-1 [43.7 kB] Get: 233 http://deb.debian.org/debian bullseye/main arm64 libmbedcrypto3 arm64 2.16.9-0.1 [211 kB] Get: 234 http://deb.debian.org/debian bullseye/main arm64 libmbedx509-0 arm64 2.16.9-0.1 [108 kB] Get: 235 http://deb.debian.org/debian bullseye/main arm64 libmbedtls12 arm64 2.16.9-0.1 [132 kB] Get: 236 http://deb.debian.org/debian bullseye/main arm64 libpng16-16 arm64 1.6.37-3 [289 kB] Get: 237 http://deb.debian.org/debian bullseye/main arm64 libpng-dev arm64 1.6.37-3 [294 kB] Get: 238 http://deb.debian.org/debian bullseye/main arm64 libseqan2-dev all 2.4.0+dfsg-14 [1220 kB] Get: 239 http://deb.debian.org/debian bullseye/main arm64 libspoa7.0.0 arm64 4.0.7+ds-1+b1 [46.4 kB] Get: 240 http://deb.debian.org/debian bullseye/main arm64 libspoa-dev arm64 4.0.7+ds-1+b1 [6992 B] Get: 241 http://deb.debian.org/debian bullseye/main arm64 ncbi-data all 6.1.20170106+dfsg1-9 [3556 kB] Get: 242 http://deb.debian.org/debian bullseye/main arm64 ncbi-blast+ arm64 2.11.0+ds-1 [10.2 MB] Get: 243 http://deb.debian.org/debian bullseye/main arm64 patchelf arm64 0.12-1 [55.5 kB] Get: 244 http://deb.debian.org/debian bullseye/main arm64 pybind11-dev all 2.6.2-1 [156 kB] Get: 245 http://deb.debian.org/debian bullseye/main arm64 python-babel-localedata all 2.8.0+dfsg.1-7 [4997 kB] Get: 246 http://deb.debian.org/debian bullseye/main arm64 python3-alabaster all 0.7.8-1.1 [18.6 kB] Get: 247 http://deb.debian.org/debian bullseye/main arm64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 248 http://deb.debian.org/debian bullseye/main arm64 python3-tz all 2021.1-1 [34.8 kB] Get: 249 http://deb.debian.org/debian bullseye/main arm64 python3-babel all 2.8.0+dfsg.1-7 [100 kB] Get: 250 http://deb.debian.org/debian bullseye/main arm64 python3-certifi all 2020.6.20-1 [151 kB] Get: 251 http://deb.debian.org/debian bullseye/main arm64 python3-chardet all 4.0.0-1 [99.0 kB] Get: 252 http://deb.debian.org/debian bullseye/main arm64 python3-roman all 2.0.0-5 [9064 B] Get: 253 http://deb.debian.org/debian bullseye/main arm64 python3-docutils all 0.16+dfsg-4 [384 kB] Get: 254 http://deb.debian.org/debian bullseye/main arm64 python3-idna all 2.10-1 [37.4 kB] Get: 255 http://deb.debian.org/debian bullseye/main arm64 python3-imagesize all 1.2.0-2 [5824 B] Get: 256 http://deb.debian.org/debian bullseye/main arm64 python3-markupsafe arm64 1.1.1-1+b3 [15.2 kB] Get: 257 http://deb.debian.org/debian bullseye/main arm64 python3-jinja2 all 2.11.3-1 [114 kB] Get: 258 http://deb.debian.org/debian bullseye/main arm64 python3-pyparsing all 2.4.7-1 [109 kB] Get: 259 http://deb.debian.org/debian bullseye/main arm64 python3-packaging all 20.9-2 [33.5 kB] Get: 260 http://deb.debian.org/debian bullseye/main arm64 python3-pybind11 all 2.6.2-1 [166 kB] Get: 261 http://deb.debian.org/debian bullseye/main arm64 python3-pygments all 2.7.1+dfsg-2.1 [657 kB] Get: 262 http://deb.debian.org/debian bullseye/main arm64 python3-six all 1.16.0-1 [17.1 kB] Get: 263 http://deb.debian.org/debian bullseye/main arm64 python3-urllib3 all 1.26.5-1~exp1 [114 kB] Get: 264 http://deb.debian.org/debian bullseye/main arm64 python3-requests all 2.25.1+dfsg-2 [69.3 kB] Get: 265 http://deb.debian.org/debian bullseye/main arm64 python3-snowballstemmer all 2.1.0-1 [58.7 kB] Get: 266 http://deb.debian.org/debian bullseye/main arm64 sphinx-common all 3.4.3-2 [578 kB] Get: 267 http://deb.debian.org/debian bullseye/main arm64 python3-sphinx all 3.4.3-2 [545 kB] Fetched 126 MB in 7s (18.6 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-7_arm64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../1-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../3-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:arm64. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_arm64.deb ... Unpacking libpython3.9-minimal:arm64 (3.9.2-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../6-libexpat1_2.2.10-2_arm64.deb ... Unpacking libexpat1:arm64 (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_arm64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:arm64 (3.9.2-1) ... Setting up libexpat1:arm64 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20513 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_arm64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package libmpdec3:arm64. Preparing to unpack .../2-libmpdec3_2.5.1-1_arm64.deb ... Unpacking libmpdec3:arm64 (2.5.1-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../3-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../4-libreadline8_8.1-1_arm64.deb ... Unpacking libreadline8:arm64 (8.1-1) ... Selecting previously unselected package libpython3.9-stdlib:arm64. Preparing to unpack .../5-libpython3.9-stdlib_3.9.2-1_arm64.deb ... Unpacking libpython3.9-stdlib:arm64 (3.9.2-1) ... Selecting previously unselected package python3.9. Preparing to unpack .../6-python3.9_3.9.2-1_arm64.deb ... Unpacking python3.9 (3.9.2-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../7-libpython3-stdlib_3.9.2-3_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.9.2-3) ... Setting up python3-minimal (3.9.2-3) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20934 files and directories currently installed.) Preparing to unpack .../000-python3_3.9.2-3_arm64.deb ... Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.30_all.deb ... Unpacking sgml-base (1.30) ... Selecting previously unselected package libncurses6:arm64. Preparing to unpack .../002-libncurses6_6.2+20201114-2_arm64.deb ... Unpacking libncurses6:arm64 (6.2+20201114-2) ... Selecting previously unselected package libprocps8:arm64. Preparing to unpack .../003-libprocps8_2%3a3.3.17-5_arm64.deb ... Unpacking libprocps8:arm64 (2:3.3.17-5) ... Selecting previously unselected package procps. Preparing to unpack .../004-procps_2%3a3.3.17-5_arm64.deb ... Unpacking procps (2:3.3.17-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../005-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package openssl. Preparing to unpack .../006-openssl_1.1.1k-1_arm64.deb ... Unpacking openssl (1.1.1k-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../007-ca-certificates_20210119_all.deb ... Unpacking ca-certificates (20210119) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../008-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../009-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../010-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../011-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libmd0:arm64. Preparing to unpack .../012-libmd0_1.0.3-3_arm64.deb ... Unpacking libmd0:arm64 (1.0.3-3) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../013-libbsd0_0.11.3-1_arm64.deb ... Unpacking libbsd0:arm64 (0.11.3-1) ... Selecting previously unselected package libedit2:arm64. Preparing to unpack .../014-libedit2_3.1-20191231-2+b1_arm64.deb ... Unpacking libedit2:arm64 (3.1-20191231-2+b1) ... Selecting previously unselected package libcbor0:arm64. Preparing to unpack .../015-libcbor0_0.5.0+dfsg-2_arm64.deb ... Unpacking libcbor0:arm64 (0.5.0+dfsg-2) ... Selecting previously unselected package libfido2-1:arm64. Preparing to unpack .../016-libfido2-1_1.6.0-2_arm64.deb ... Unpacking libfido2-1:arm64 (1.6.0-2) ... Selecting previously unselected package openssh-client. Preparing to unpack .../017-openssh-client_1%3a8.4p1-5_arm64.deb ... Unpacking openssh-client (1:8.4p1-5) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../018-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../019-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../020-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../021-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../022-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../023-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package chrpath. Preparing to unpack .../024-chrpath_0.16-2+b1_arm64.deb ... Unpacking chrpath (0.16-2+b1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../025-cmake-data_3.18.4-2_all.deb ... Unpacking cmake-data (3.18.4-2) ... Selecting previously unselected package libicu67:arm64. Preparing to unpack .../026-libicu67_67.1-7_arm64.deb ... Unpacking libicu67:arm64 (67.1-7) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../027-libxml2_2.9.10+dfsg-6.7_arm64.deb ... Unpacking libxml2:arm64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package libarchive13:arm64. Preparing to unpack .../028-libarchive13_3.4.3-2+b1_arm64.deb ... Unpacking libarchive13:arm64 (3.4.3-2+b1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../029-libbrotli1_1.0.9-2+b2_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b2) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../030-libsasl2-modules-db_2.1.27+dfsg-2.1_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../031-libsasl2-2_2.1.27+dfsg-2.1_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:arm64. Preparing to unpack .../032-libldap-2.4-2_2.4.57+dfsg-3_arm64.deb ... 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Setting up openmpi-bin (4.1.0-10) ... update-alternatives: using /usr/bin/mpirun.openmpi to provide /usr/bin/mpirun (mpirun) in auto mode update-alternatives: using /usr/bin/mpicc.openmpi to provide /usr/bin/mpicc (mpi) in auto mode Setting up mpi-default-bin (1.13) ... Setting up libboost-python1.74-dev (1.74.0-9) ... Setting up libboost-python-dev (1.74.0.3) ... Setting up libboost-graph-parallel1.74-dev (1.74.0-9) ... Setting up libopenmpi-dev:arm64 (4.1.0-10) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/openmpi/include to provide /usr/include/aarch64-linux-gnu/mpi (mpi-aarch64-linux-gnu) in auto mode Setting up libboost-mpi-python1.74.0 (1.74.0-9) ... Setting up libboost-graph-parallel-dev (1.74.0.3) ... Setting up mpi-default-dev (1.13) ... Setting up libboost-mpi1.74-dev (1.74.0-9) ... Setting up libboost-mpi-python1.74-dev (1.74.0-9) ... Setting up libboost-mpi-python-dev (1.74.0.3) ... Setting up libboost-mpi-dev (1.74.0.3) ... Setting up libboost-all-dev (1.74.0.3) ... Processing triggers for libc-bin (2.31-13) ... Processing triggers for sgml-base (1.30) ... Setting up docutils-common (0.16+dfsg-4) ... Processing triggers for sgml-base (1.30) ... Setting up python3-docutils (0.16+dfsg-4) ... update-alternatives: using /usr/share/docutils/scripts/python3/rst-buildhtml to provide /usr/bin/rst-buildhtml (rst-buildhtml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html to provide /usr/bin/rst2html (rst2html) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html4 to provide /usr/bin/rst2html4 (rst2html4) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2html5 to provide /usr/bin/rst2html5 (rst2html5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2latex to provide /usr/bin/rst2latex (rst2latex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2man to provide /usr/bin/rst2man (rst2man) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt to provide /usr/bin/rst2odt (rst2odt) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2odt_prepstyles to provide /usr/bin/rst2odt_prepstyles (rst2odt_prepstyles) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2pseudoxml to provide /usr/bin/rst2pseudoxml (rst2pseudoxml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2s5 to provide /usr/bin/rst2s5 (rst2s5) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xetex to provide /usr/bin/rst2xetex (rst2xetex) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rst2xml to provide /usr/bin/rst2xml (rst2xml) in auto mode update-alternatives: using /usr/share/docutils/scripts/python3/rstpep2html to provide /usr/bin/rstpep2html (rstpep2html) in auto mode Setting up python3-sphinx (3.4.3-2) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/shasta-0.7.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../shasta_0.7.0-3_source.changes dpkg-buildpackage: info: source package shasta dpkg-buildpackage: info: source version 0.7.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3,sphinxdoc dh_clean debian/rules binary dh binary --with python3,sphinxdoc dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/shasta-0.7.0' dh_auto_configure -- -DBUILD_ID=0.7.0 cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DBUILD_ID=0.7.0 .. -- The C compiler identification is GNU 10.2.1 -- The CXX compiler identification is GNU 10.2.1 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Processor architecture is aarch64 -- CMAKE_SYSTEM_NAME is Linux -- MACOS is OFF -- BUILD_STATIC_LIBRARY is ON -- BUILD_STATIC_EXECUTABLE is OFF -- BUILD_DYNAMIC_LIBRARY is ON -- BUILD_DYNAMIC_EXECUTABLE is ON -- BUILD_APPIMAGE is OFF -- BUILD_NATIVE is OFF -- BUILD_DEBUG is OFF -- BUILD_ID is: 0.7.0 -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR -- Build files have been written to: /build/shasta-0.7.0/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/shasta-0.7.0' debian/rules override_dh_auto_build make[1]: Entering directory '/build/shasta-0.7.0' dh_auto_build cd obj-aarch64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/shasta-0.7.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/shasta-0.7.0 -B/build/shasta-0.7.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/shasta-0.7.0/obj-aarch64-linux-gnu/CMakeFiles /build/shasta-0.7.0/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/shasta-0.7.0/obj-aarch64-linux-gnu' make -f staticLibrary/CMakeFiles/shastaStaticLibrary.dir/build.make staticLibrary/CMakeFiles/shastaStaticLibrary.dir/depend make -f dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/build.make dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/depend make[4]: Entering directory '/build/shasta-0.7.0/obj-aarch64-linux-gnu' cd /build/shasta-0.7.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/shasta-0.7.0 /build/shasta-0.7.0/staticLibrary /build/shasta-0.7.0/obj-aarch64-linux-gnu /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary/CMakeFiles/shastaStaticLibrary.dir/DependInfo.cmake --color= make[4]: Entering directory '/build/shasta-0.7.0/obj-aarch64-linux-gnu' cd /build/shasta-0.7.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/shasta-0.7.0 /build/shasta-0.7.0/dynamicLibrary /build/shasta-0.7.0/obj-aarch64-linux-gnu /build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicLibrary /build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/DependInfo.cmake --color= Dependee "/build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary/CMakeFiles/shastaStaticLibrary.dir/DependInfo.cmake" is newer than depender "/build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary/CMakeFiles/shastaStaticLibrary.dir/depend.internal". Dependee "/build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary/CMakeFiles/shastaStaticLibrary.dir/depend.internal". Dependee "/build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/DependInfo.cmake" is newer than depender "/build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/depend.internal". Dependee "/build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicLibrary/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/depend.internal". Scanning dependencies of target shastaStaticLibrary make[4]: Leaving directory '/build/shasta-0.7.0/obj-aarch64-linux-gnu' make -f staticLibrary/CMakeFiles/shastaStaticLibrary.dir/build.make staticLibrary/CMakeFiles/shastaStaticLibrary.dir/build make[4]: Entering directory '/build/shasta-0.7.0/obj-aarch64-linux-gnu' Scanning dependencies of target shastaDynamicLibrary [ 1%] Building CXX object staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/Align4.cpp.o make[4]: Leaving directory '/build/shasta-0.7.0/obj-aarch64-linux-gnu' make -f dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/build.make dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/build cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -I/build/shasta-0.7.0/staticLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security 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object staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AssembledSegment.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -I/build/shasta-0.7.0/staticLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Wall -Wconversion -Wno-unused-result -g0 -O3 -o CMakeFiles/shastaStaticLibrary.dir/__/src/AlignmentGraph.cpp.o -c /build/shasta-0.7.0/src/AlignmentGraph.cpp cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -I/build/shasta-0.7.0/staticLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Wall 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-I/usr/lib/python3/dist-packages/pybind11/include -o CMakeFiles/shastaDynamicLibrary.dir/__/src/Align4.cpp.o -c /build/shasta-0.7.0/src/Align4.cpp [ 5%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/Alignment.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -DSHASTA_PYTHON_API -I/build/shasta-0.7.0/dynamicLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++14 -Wall -Wconversion -Wno-unused-result -g0 -O3 -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/pybind11/include -o CMakeFiles/shastaDynamicLibrary.dir/__/src/Alignment.cpp.o -c /build/shasta-0.7.0/src/Alignment.cpp [ 6%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AlignmentGraph.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -DSHASTA_PYTHON_API -I/build/shasta-0.7.0/dynamicLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++14 -Wall -Wconversion -Wno-unused-result -g0 -O3 -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/pybind11/include -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AlignmentGraph.cpp.o -c /build/shasta-0.7.0/src/AlignmentGraph.cpp [ 6%] Building CXX object staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerAlign1.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -I/build/shasta-0.7.0/staticLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Wall -Wconversion -Wno-unused-result -g0 -O3 -o CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerAlign1.cpp.o -c /build/shasta-0.7.0/src/AssemblerAlign1.cpp [ 7%] Building CXX object staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerAlign3.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -I/build/shasta-0.7.0/staticLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Wall -Wconversion -Wno-unused-result -g0 -O3 -o CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerAlign3.cpp.o -c /build/shasta-0.7.0/src/AssemblerAlign3.cpp [ 8%] Building CXX object staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerAlign4.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -I/build/shasta-0.7.0/staticLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Wall -Wconversion -Wno-unused-result -g0 -O3 -o CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerAlign4.cpp.o -c /build/shasta-0.7.0/src/AssemblerAlign4.cpp [ 8%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssembledSegment.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -DSHASTA_PYTHON_API -I/build/shasta-0.7.0/dynamicLibrary/../src -g -O2 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-DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -I/build/shasta-0.7.0/staticLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Wall -Wconversion -Wno-unused-result -g0 -O3 -o CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerAlignments.cpp.o -c /build/shasta-0.7.0/src/AssemblerAlignments.cpp [ 10%] Building CXX object staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerAnalyzePaths.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -I/build/shasta-0.7.0/staticLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Wall -Wconversion -Wno-unused-result -g0 -O3 -o 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staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerDetangle.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -I/build/shasta-0.7.0/staticLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Wall -Wconversion -Wno-unused-result -g0 -O3 -o CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerDetangle.cpp.o -c /build/shasta-0.7.0/src/AssemblerDetangle.cpp [ 13%] Building CXX object staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerHttpServer-Alignments.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -I/build/shasta-0.7.0/staticLibrary/../src -g -O2 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/build/shasta-0.7.0/src/AssemblerHttpServer-AssemblyGraph.cpp [ 15%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign1.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -DSHASTA_PYTHON_API -I/build/shasta-0.7.0/dynamicLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++14 -Wall -Wconversion -Wno-unused-result -g0 -O3 -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/pybind11/include -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign1.cpp.o -c /build/shasta-0.7.0/src/AssemblerAlign1.cpp [ 16%] Building CXX object staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerHttpServer-CompressedAssemblyGraph.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -I/build/shasta-0.7.0/staticLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Wall -Wconversion -Wno-unused-result -g0 -O3 -o CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerHttpServer-CompressedAssemblyGraph.cpp.o -c /build/shasta-0.7.0/src/AssemblerHttpServer-CompressedAssemblyGraph.cpp [ 16%] Building CXX object staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerHttpServer-MarkerGraph.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -I/build/shasta-0.7.0/staticLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time 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dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign3.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -DSHASTA_PYTHON_API -I/build/shasta-0.7.0/dynamicLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++14 -Wall -Wconversion -Wno-unused-result -g0 -O3 -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/pybind11/include -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign3.cpp.o -c /build/shasta-0.7.0/src/AssemblerAlign3.cpp [ 18%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerAlign4.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG 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staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerLowHash.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -I/build/shasta-0.7.0/staticLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Wall -Wconversion -Wno-unused-result -g0 -O3 -o CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerLowHash.cpp.o -c /build/shasta-0.7.0/src/AssemblerLowHash.cpp [ 23%] Building CXX object staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerMarkerGraph.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -I/build/shasta-0.7.0/staticLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. 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staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerOptions.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -I/build/shasta-0.7.0/staticLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Wall -Wconversion -Wno-unused-result -g0 -O3 -o CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerOptions.cpp.o -c /build/shasta-0.7.0/src/AssemblerOptions.cpp [ 27%] Building CXX object staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/AssemblerReadGraph.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -I/build/shasta-0.7.0/staticLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. 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dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerCompressedAssemblyGraph.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -DSHASTA_PYTHON_API -I/build/shasta-0.7.0/dynamicLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++14 -Wall -Wconversion -Wno-unused-result -g0 -O3 -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/pybind11/include -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerCompressedAssemblyGraph.cpp.o -c /build/shasta-0.7.0/src/AssemblerCompressedAssemblyGraph.cpp [ 29%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerCreateReadGraphUsingPseudoPaths.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/c++ 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staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/Base.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -I/build/shasta-0.7.0/staticLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Wall -Wconversion -Wno-unused-result -g0 -O3 -o CMakeFiles/shastaStaticLibrary.dir/__/src/Base.cpp.o -c /build/shasta-0.7.0/src/Base.cpp [ 32%] Building CXX object staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/BubbleGraph.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -I/build/shasta-0.7.0/staticLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat 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staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/LocalMarkerGraph.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -I/build/shasta-0.7.0/staticLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Wall -Wconversion -Wno-unused-result -g0 -O3 -o CMakeFiles/shastaStaticLibrary.dir/__/src/LocalMarkerGraph.cpp.o -c /build/shasta-0.7.0/src/LocalMarkerGraph.cpp [ 43%] Building CXX object staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/LocalReadGraph.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -I/build/shasta-0.7.0/staticLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. 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cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -I/build/shasta-0.7.0/staticLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Wall -Wconversion -Wno-unused-result -g0 -O3 -o CMakeFiles/shastaStaticLibrary.dir/__/src/LowHash0.cpp.o -c /build/shasta-0.7.0/src/LowHash0.cpp [ 45%] Building CXX object dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-ReadGraph.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -DSHASTA_PYTHON_API -I/build/shasta-0.7.0/dynamicLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security 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CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerHttpServer-Reads.cpp.o -c /build/shasta-0.7.0/src/AssemblerHttpServer-Reads.cpp [ 45%] Building CXX object staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/LowHash1.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -I/build/shasta-0.7.0/staticLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Wall -Wconversion -Wno-unused-result -g0 -O3 -o CMakeFiles/shastaStaticLibrary.dir/__/src/LowHash1.cpp.o -c /build/shasta-0.7.0/src/LowHash1.cpp [ 46%] Building CXX object staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/MarkerFinder.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED 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dynamicLibrary/CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerKmers.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -DSHASTA_PYTHON_API -I/build/shasta-0.7.0/dynamicLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++14 -Wall -Wconversion -Wno-unused-result -g0 -O3 -I/usr/include/python3.9 -I/usr/lib/python3/dist-packages/pybind11/include -o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerKmers.cpp.o -c /build/shasta-0.7.0/src/AssemblerKmers.cpp [ 49%] Building CXX object staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/MarkerGraph.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER 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staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/SimpleBayesianConsensusCaller-Builtin.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -I/build/shasta-0.7.0/staticLibrary/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Wall -Wconversion -Wno-unused-result -g0 -O3 -o CMakeFiles/shastaStaticLibrary.dir/__/src/SimpleBayesianConsensusCaller-Builtin.cpp.o -c /build/shasta-0.7.0/src/SimpleBayesianConsensusCaller-Builtin.cpp [ 58%] Building CXX object staticLibrary/CMakeFiles/shastaStaticLibrary.dir/__/src/SimpleBayesianConsensusCaller.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/staticLibrary && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER 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CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerOptions.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReadGraph.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReadGraph2.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblerReads.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblyGraph.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblyPathGraph.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/AssemblyPathGraph2.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/Base.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/BubbleGraph.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/CompactUndirectedGraph.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/CompressedAssemblyGraph.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/ConsensusCaller.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/Coverage.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/Histogram.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/HttpServer.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/InducedAlignment.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/LocalAlignmentGraph.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/LocalAssemblyGraph.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/LocalMarkerGraph-Write.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/LocalMarkerGraph.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/LocalReadGraph.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/LongBaseSequence.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/LowHash0.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/LowHash1.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/MarkerFinder.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/MarkerGraph.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/MedianConsensusCaller.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/MemoryMappedVector.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/MultithreadedObject.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/MurmurHash2.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/PeakFinder.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/PngImage.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/PythonModule.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/ReadGraph.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/ReadLoader.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/Reads.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/ShortBaseSequence.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/SimpleBayesianConsensusCaller-Builtin.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/SimpleBayesianConsensusCaller.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/SimpleConsensusCaller.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/buildId.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/compressAlignment.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/computeRunLengthRepresentation.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/dset64Test.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/filesystem.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/html.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/mappedCopy.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/platformDependent.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/runCommandWithTimeout.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/testSpoa.cpp.o CMakeFiles/shastaDynamicLibrary.dir/__/src/touchMemory.cpp.o -latomic -lpng -lboost_program_options -lpthread -lz -lspoa -lpython3.9 -lcrypt -lpthread -ldl -lutil -lm -lm make[4]: Leaving directory '/build/shasta-0.7.0/obj-aarch64-linux-gnu' [ 99%] Built target shastaDynamicLibrary make -f dynamicExecutable/CMakeFiles/shastaDynamicExecutable.dir/build.make dynamicExecutable/CMakeFiles/shastaDynamicExecutable.dir/depend make[4]: Entering directory '/build/shasta-0.7.0/obj-aarch64-linux-gnu' cd /build/shasta-0.7.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/shasta-0.7.0 /build/shasta-0.7.0/dynamicExecutable /build/shasta-0.7.0/obj-aarch64-linux-gnu /build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicExecutable /build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicExecutable/CMakeFiles/shastaDynamicExecutable.dir/DependInfo.cmake --color= Dependee "/build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicExecutable/CMakeFiles/shastaDynamicExecutable.dir/DependInfo.cmake" is newer than depender "/build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicExecutable/CMakeFiles/shastaDynamicExecutable.dir/depend.internal". Dependee "/build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicExecutable/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicExecutable/CMakeFiles/shastaDynamicExecutable.dir/depend.internal". Scanning dependencies of target shastaDynamicExecutable make[4]: Leaving directory '/build/shasta-0.7.0/obj-aarch64-linux-gnu' make -f dynamicExecutable/CMakeFiles/shastaDynamicExecutable.dir/build.make dynamicExecutable/CMakeFiles/shastaDynamicExecutable.dir/build make[4]: Entering directory '/build/shasta-0.7.0/obj-aarch64-linux-gnu' [ 99%] Building CXX object dynamicExecutable/CMakeFiles/shastaDynamicExecutable.dir/__/srcMain/main.cpp.o cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicExecutable && /usr/bin/c++ -DBOOST_ERROR_CODE_HEADER_ONLY -DBOOST_SYSTEM_NO_DEPRECATED -DBUILD_ID=0.7.0 -DNDEBUG -DSHASTA_HTTP_SERVER -DSHASTA_PYTHON_API -I/build/shasta-0.7.0/dynamicExecutable/../src -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -Wall -Wconversion -Wno-unused-result -g0 -O3 -o CMakeFiles/shastaDynamicExecutable.dir/__/srcMain/main.cpp.o -c /build/shasta-0.7.0/srcMain/main.cpp [100%] Linking CXX executable shastaDynamic cd /build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicExecutable && /usr/bin/cmake -E cmake_link_script CMakeFiles/shastaDynamicExecutable.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/shasta-0.7.0=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/shastaDynamicExecutable.dir/__/srcMain/main.cpp.o -o shastaDynamic -Wl,-rpath,/build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicLibrary: ../dynamicLibrary/shasta.so -latomic -lboost_system -lboost_program_options -lboost_chrono -lspoa -lpng -lz -lpthread -lpython3.9 -lcrypt -lpthread -ldl -lutil -lm -lm make[4]: Leaving directory '/build/shasta-0.7.0/obj-aarch64-linux-gnu' [100%] Built target shastaDynamicExecutable make[3]: Leaving directory '/build/shasta-0.7.0/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/shasta-0.7.0/obj-aarch64-linux-gnu/CMakeFiles 0 make[2]: Leaving directory '/build/shasta-0.7.0/obj-aarch64-linux-gnu' # Move shared library into sphinx documentation folder for doc generation find . -name "shasta.so" -exec cp {} docs/PythonApi/ \; cp: './docs/PythonApi/shasta.so' and 'docs/PythonApi/shasta.so' are the same file PYTHONPATH=docs/PythonApi/ python3 -m sphinx -N -bhtml docs/PythonApi/ build/html # HTML generator Running Sphinx v3.4.3 making output directory... done WARNING: html_static_path entry '_static' does not exist building [mo]: targets for 0 po files that are out of date building [html]: targets for 1 source files that are out of date updating environment: [new config] 1 added, 0 changed, 0 removed reading sources... [100%] index looking for now-outdated files... none found pickling environment... done checking consistency... done preparing documents... done writing output... [100%] index generating indices... genindex py-modindex done writing additional pages... search done copying static files... done copying extra files... done dumping search index in English (code: en)... done dumping object inventory... done build succeeded, 1 warning. The HTML pages are in build/html. make[1]: Leaving directory '/build/shasta-0.7.0' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-aarch64-linux-gnu && make -j8 install DESTDIR=/build/shasta-0.7.0/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/shasta-0.7.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/shasta-0.7.0 -B/build/shasta-0.7.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/shasta-0.7.0/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/shasta-0.7.0/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/shasta-0.7.0/debian/tmp/build/shasta-0.7.0/obj-aarch64-linux-gnu/./shasta-install/bin/AlignOrientedReads.py -- Installing: 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/build/shasta-0.7.0/debian/tmp/build/shasta-0.7.0/obj-aarch64-linux-gnu/./shasta-install/docs/Bubble.png -- Installing: /build/shasta-0.7.0/debian/tmp/build/shasta-0.7.0/obj-aarch64-linux-gnu/./shasta-install/docs/Acknowledgments.html -- Installing: /build/shasta-0.7.0/debian/tmp/build/shasta-0.7.0/obj-aarch64-linux-gnu/./shasta-install/bin/shasta.a -- Installing: /build/shasta-0.7.0/debian/tmp/build/shasta-0.7.0/obj-aarch64-linux-gnu/./shasta-install/bin/shasta.so -- Installing: /build/shasta-0.7.0/debian/tmp/build/shasta-0.7.0/obj-aarch64-linux-gnu/./shasta-install/bin/shastaDynamic make[1]: Leaving directory '/build/shasta-0.7.0/obj-aarch64-linux-gnu' debian/rules override_dh_install-arch make[1]: Entering directory '/build/shasta-0.7.0' dh_install -a # Rename shastaDynamic to shasta for ease mv debian/shasta/usr/bin/shastaDynamic debian/shasta/usr/bin/shasta # The library is in a more unusual place (nested within /usr/lib), so modify # the ELF chrpath -r /usr/lib/python3/dist-packages \ debian/shasta/usr/bin/shasta debian/shasta/usr/bin/shasta: RUNPATH=/build/shasta-0.7.0/obj-aarch64-linux-gnu/dynamicLibrary: debian/shasta/usr/bin/shasta: new RUNPATH: /usr/lib/python3/dist-packages patchelf \ --replace-needed shasta.so shasta.cpython-39-aarch64-linux-gnu.so \ debian/shasta/usr/bin/shasta make[1]: Leaving directory '/build/shasta-0.7.0' dh_install -Nshasta -Npython3-shasta dh_installdocs dh_sphinxdoc dh_installchangelogs dh_installexamples dh_installman dh_python3 I: dh_python3 fs:343: renaming shasta.so to shasta.cpython-39-aarch64-linux-gnu.so debian/rules execute_after_dh_python3-arch make[1]: Entering directory '/build/shasta-0.7.0' patchelf \ --set-soname shasta.cpython-39-aarch64-linux-gnu.so \ /build/shasta-0.7.0/debian/python3-shasta/usr/lib/python3/dist-packages/shasta.cpython-39-aarch64-linux-gnu.so make[1]: Leaving directory '/build/shasta-0.7.0' dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms debian/rules override_dh_missing make[1]: Entering directory '/build/shasta-0.7.0' # No need to install docker files find debian/tmp -type d -name docker | xargs rm -rf # static library should not be installed find debian/tmp -name shasta.a -delete # dynamic library was installed manually before - so remove it from debian/tmp find debian/tmp -name shasta.so -delete # 11MB of generated docs should go into a separate package if this is considered sensible # FIXME: for the moment do not install these find debian/tmp -name docs | xargs rm -rf # Remove rest of files which have already been installed rm -rf debian/tmp//build/shasta-0.7.0 dh_missing --list-missing make[1]: Leaving directory '/build/shasta-0.7.0' dh_dwz -a dwz: debian/shasta/usr/bin/shasta: .debug_info section not present dwz: debian/python3-shasta/usr/lib/python3/dist-packages/shasta.cpython-39-aarch64-linux-gnu.so: .debug_info section not present dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dpkg-gencontrol: warning: package python3-shasta: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-shasta: substitution variable ${python3:Versions} unused, but is defined dpkg-gencontrol: warning: package python3-shasta: substitution variable ${python3:Provides} unused, but is defined dpkg-gencontrol: warning: package python3-shasta: substitution variable ${python3:Versions} unused, but is defined dh_md5sums dh_builddeb dpkg-deb: building package 'shasta' in '../shasta_0.7.0-3_arm64.deb'. dpkg-deb: building package 'python3-shasta-dbgsym' in '../python3-shasta-dbgsym_0.7.0-3_arm64.deb'. dpkg-deb: building package 'python3-shasta-doc' in '../python3-shasta-doc_0.7.0-3_all.deb'. dpkg-deb: building package 'shasta-dbgsym' in '../shasta-dbgsym_0.7.0-3_arm64.deb'. dpkg-deb: building package 'python3-shasta' in '../python3-shasta_0.7.0-3_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../shasta_0.7.0-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/11742 and its subdirectories I: Current time: Tue Aug 30 03:22:23 -12 2022 I: pbuilder-time-stamp: 1661872943 Wed Jul 28 08:59:26 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink16-arm64.debian.net. Wed Jul 28 08:59:26 UTC 2021 I: Preparing to do remote build '2' on codethink16-arm64.debian.net. Wed Jul 28 09:44:08 UTC 2021 I: Deleting $TMPDIR on codethink16-arm64.debian.net. Wed Jul 28 09:44:09 UTC 2021 I: shasta_0.7.0-3_arm64.changes: Format: 1.8 Date: Wed, 13 Jan 2021 10:43:17 +0100 Source: shasta Binary: python3-shasta python3-shasta-dbgsym python3-shasta-doc shasta shasta-dbgsym Architecture: arm64 all Version: 0.7.0-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: python3-shasta - nanopore whole genome assembly (dynamic library) python3-shasta-doc - nanopore whole genome assembly (documentation) shasta - nanopore whole genome assembly (binaries and scripts) Changes: shasta (0.7.0-3) unstable; urgency=medium . * Team upload. * python3-shasta: Remove explicit depends on many libraries, ${shlibs:Depends} covers the needful. Checksums-Sha1: 0fd066c9d926fa66b665f5fdaea84d57d66717e9 99576 python3-shasta-dbgsym_0.7.0-3_arm64.deb e3138e8701c20e5b895e342095c75be5e20791f8 19040 python3-shasta-doc_0.7.0-3_all.deb 8b7a60185161bcc1cc56403f8a4fb984eac36005 1334572 python3-shasta_0.7.0-3_arm64.deb f66ed9256c9a78efd4a3504958f7cfcec26a7f49 14948 shasta-dbgsym_0.7.0-3_arm64.deb 15c5eecf2ddaacfa23eaf5c7761159eb2b2cedee 13950 shasta_0.7.0-3_arm64.buildinfo 006fc3c83257d3f3fd741e7be46303ef7717f613 538824 shasta_0.7.0-3_arm64.deb Checksums-Sha256: a7a3ab783fdf0ebce466f12345b982a4ee970d56925507bc50d301e054b715bd 99576 python3-shasta-dbgsym_0.7.0-3_arm64.deb ded235d839d9dc7c157515a4a5ca4393159cb6ab08856038c4e28bda5f16b95c 19040 python3-shasta-doc_0.7.0-3_all.deb 6717036c6b5637a8f7a6b295388e3fea43b1751aee8c50b7a91de9021a11c144 1334572 python3-shasta_0.7.0-3_arm64.deb 4cd44b758934a48fb37e8703cafb9d91c8a8697cc5049913e533e751c88a55a7 14948 shasta-dbgsym_0.7.0-3_arm64.deb 1cfa37e9e3a8f696cab65cbb44696c8b6c1ffc0dc99ee770bac9d27d5ea497b6 13950 shasta_0.7.0-3_arm64.buildinfo 2744658f84a79fd35e16289fce5afec7c945f9d0e0299fcac6184dc0d2c3561d 538824 shasta_0.7.0-3_arm64.deb Files: 7193787e50b53d513e3903cc57456c54 99576 debug optional python3-shasta-dbgsym_0.7.0-3_arm64.deb 7cce5e08c8cbd90fa365c5b4cb89c8cb 19040 doc optional python3-shasta-doc_0.7.0-3_all.deb 893a479999ffc88798c911e179fd845b 1334572 python optional python3-shasta_0.7.0-3_arm64.deb 689c19a724037cb61b4f36dac2edaa87 14948 debug optional shasta-dbgsym_0.7.0-3_arm64.deb f5f2645a6be45923981a648cb7a039f7 13950 science optional shasta_0.7.0-3_arm64.buildinfo 972ba4e67345f65c74455a128b37c5db 538824 science optional shasta_0.7.0-3_arm64.deb Wed Jul 28 09:44:10 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.ro2MXGpBbE/shasta_0.7.0-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.ro2MXGpBbE/shasta_0.7.0-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.ro2MXGpBbE/shasta_0.7.0-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.ro2MXGpBbE/b1/shasta_0.7.0-3_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.ro2MXGpBbE/b2/shasta_0.7.0-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.298s) 0.298s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.043s) 0.043s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Wed Jul 28 09:44:12 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Wed Jul 28 09:44:12 UTC 2021 I: shasta from bullseye built successfully and reproducibly on arm64. Wed Jul 28 09:44:13 UTC 2021 I: Submitting .buildinfo files to external archives: Wed Jul 28 09:44:13 UTC 2021 I: Submitting 16K b1/shasta_0.7.0-3_arm64.buildinfo.asc Wed Jul 28 09:44:15 UTC 2021 I: Submitting 16K b2/shasta_0.7.0-3_arm64.buildinfo.asc Wed Jul 28 09:44:16 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Jul 28 09:44:16 UTC 2021 I: Done submitting .buildinfo files. Wed Jul 28 09:44:16 UTC 2021 I: Removing signed shasta_0.7.0-3_arm64.buildinfo.asc files: removed './b1/shasta_0.7.0-3_arm64.buildinfo.asc' removed './b2/shasta_0.7.0-3_arm64.buildinfo.asc'