Tue Aug 10 09:27:59 UTC 2021 I: starting to build reprof/bullseye/arm64 on jenkins on '2021-08-10 09:27' Tue Aug 10 09:27:59 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_30/15652/console.log Tue Aug 10 09:27:59 UTC 2021 I: Downloading source for bullseye/reprof=1.0.1-7 --2021-08-10 09:27:59-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/reprof/reprof_1.0.1-7.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2195 (2.1K) Saving to: ‘reprof_1.0.1-7.dsc’ 0K .. 100% 189M=0s 2021-08-10 09:27:59 (189 MB/s) - ‘reprof_1.0.1-7.dsc’ saved [2195/2195] Tue Aug 10 09:27:59 UTC 2021 I: reprof_1.0.1-7.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: reprof Binary: reprof, librg-reprof-bundle-perl Architecture: all Version: 1.0.1-7 Maintainer: Debian Med Packaging Team Uploaders: Peter Hoenigschmid , Laszlo Kajan , Andreas Tille Homepage: https://rostlab.org/ Standards-Version: 4.4.0 Vcs-Browser: https://salsa.debian.org/med-team/reprof Vcs-Git: https://salsa.debian.org/med-team/reprof.git Testsuite: autopkgtest Testsuite-Triggers: libai-fann-perl, pkg-perl-autopkgtest, pkg-perl-autopkgtest-heavy Build-Depends: debhelper-compat (= 12), libmodule-build-perl Package-List: librg-reprof-bundle-perl deb perl optional arch=all reprof deb science optional arch=all Checksums-Sha1: 7f85dbf7cba54eefde3189cce1eee150910f3c6c 9041799 reprof_1.0.1.orig.tar.gz e611fd61208368db85b9a9d0f7a34f44f91115b2 5072 reprof_1.0.1-7.debian.tar.xz Checksums-Sha256: a6ad4a0595e6a152612c9bcd6ab86f9f4c7a649c5aaed7e06bde611e2e9346c2 9041799 reprof_1.0.1.orig.tar.gz 63ce632acfe791105aefd107afee18aeb229b1e4f64fe81785600d737c2eafde 5072 reprof_1.0.1-7.debian.tar.xz Files: 77e6f917af1667e93f5bae7c23f78d54 9041799 reprof_1.0.1.orig.tar.gz 60824de51b5066399cbda9b990445390 5072 reprof_1.0.1-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl2EdJwRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGYsw/+P4cPuTNhpKKkEydodXujKeh+5UrohmIO +QsUb8LRsswDiTB4ojJWv2LCe//dyrtoAaE8/PV7UOP4hcxmDzfrMGidqPBOMTtc YOHH/UFV9pGsM05N23Dxjp8ypUrV7R4nU/CSLdEYPC6vbYO3ezbO29fDK9iJx3+e l8mTNeMO8Bngn3yQb/MlBq2g//Bb8EfrfFZ8633iDJklLxAWTJR0aRk6QfbdR9/d Y9i/M48a6bKSfbw4mpztKKf4TN+Hnai5OCB90B81GR8U97tZ5wKRpTnGDS4Z83jB HJIi/z03kpwzyIOtIBydoc8f9rgX9P+0Sp5cwHkZkqML1zjW4++I4CLjXvCtim/2 gU43B1euzHtLDCAcdJU9j6WBBE1TnKDcedE/3d8eNyEYdLc6M7ZdpDBAI6KIBAwH P6uPETqIBzDaPY3Cerxf15aHq56beEfXDo6dCcyzIv7qOgMH0Ycdx28EtRiJdxrI 2qxqqlrVhH7At7VKoRTG3yyFT/hoKPHX5UWRvf/VwpzLpxm1GHN+3u7lYAg7nrzs MrBQdRbE+Q3mepUZH964Q+QBvwDkHUReKrwBY3bopuurfM8EqF3NUyCyl8qVSl5n Own8QMnrYp+9fwRBOj+y4/Gc0VcMnPFbhnDs7BlA/BN5n0wCxGB3Q3oMn8DX7zUE 2PPuFT54oGE= =vCkj -----END PGP SIGNATURE----- Tue Aug 10 09:27:59 UTC 2021 I: Checking whether the package is not for us Tue Aug 10 09:27:59 UTC 2021 I: Starting 1st build on remote node codethink16-arm64.debian.net. Tue Aug 10 09:27:59 UTC 2021 I: Preparing to do remote build '1' on codethink16-arm64.debian.net. Tue Aug 10 09:30:22 UTC 2021 I: Deleting $TMPDIR on codethink16-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Aug 9 21:28:04 -12 2021 I: pbuilder-time-stamp: 1628587684 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [reprof_1.0.1-7.dsc] I: copying [./reprof_1.0.1.orig.tar.gz] I: copying [./reprof_1.0.1-7.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.WdlQDcSt/trustedkeys.kbx': General error gpgv: Signature made Thu Sep 19 18:41:32 2019 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./reprof_1.0.1-7.dsc dpkg-source: info: extracting reprof in reprof-1.0.1 dpkg-source: info: unpacking reprof_1.0.1.orig.tar.gz dpkg-source: info: unpacking reprof_1.0.1-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying update-model-files.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/12083/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='12083' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.WVil1thl9V/pbuilderrc_tLVi --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.WVil1thl9V/b1 --logfile b1/build.log reprof_1.0.1-7.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink16-arm64 4.15.0-153-generic #160-Ubuntu SMP Thu Jul 29 07:06:07 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Aug 4 08:25 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Jul 28 07:09 more -rwsr-xr-x 1 root root 51360 Jul 28 07:09 mount -rwxr-xr-x 1 root root 14496 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 9 21:24 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Jul 28 07:09 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 21:55 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30880 Jul 28 07:09 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/12083/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 12), libmodule-build-perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 12); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libmodule-build-perl; however: Package libmodule-build-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1{a} libfile-stripnondeterminism-perl{a} libicu67{a} libmagic-mgc{a} libmagic1{a} libmodule-build-perl{a} libpipeline1{a} libsigsegv2{a} libsub-override-perl{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl libmodule-signature-perl libpod-readme-perl libsoftware-license-perl lynx wget 0 packages upgraded, 32 newly installed, 0 to remove and 0 not upgraded. Need to get 18.2 MB of archives. After unpacking 67.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-8 [142 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libmodule-build-perl all 0.423100-1 [258 kB] Fetched 18.2 MB in 0s (39.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36.1-8_arm64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../01-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../03-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../05-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../06-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../07-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../08-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../09-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../10-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../20-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../23-libelf1_0.183-1_arm64.deb ... Unpacking libelf1:arm64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.13+20210201-1_arm64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:arm64. Preparing to unpack .../25-libicu67_67.1-7_arm64.deb ... Unpacking libicu67:arm64 (67.1-7) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../26-libxml2_2.9.10+dfsg-6.7_arm64.deb ... Unpacking libxml2:arm64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.21-4_arm64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package libmodule-build-perl. Preparing to unpack .../31-libmodule-build-perl_0.423100-1_all.deb ... Adding 'diversion of /usr/bin/config_data to /usr/bin/config_data.diverted by libmodule-build-perl' Adding 'diversion of /usr/share/man/man1/config_data.1.gz to /usr/share/man/man1/config_data.diverted.1.gz by libmodule-build-perl' Unpacking libmodule-build-perl (0.423100-1) ... Setting up libpipeline1:arm64 (1.5.3-1) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libmodule-build-perl (0.423100-1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libelf1:arm64 (0.183-1) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up debhelper (13.3.4) ... Processing triggers for libc-bin (2.31-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.25.3-1.1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reprof-1.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../reprof_1.0.1-7_source.changes dpkg-buildpackage: info: source package reprof dpkg-buildpackage: info: source version 1.0.1-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean dh_testdir dh_auto_clean dh_autoreconf_clean debian/rules override_dh_clean make[1]: Entering directory '/build/reprof-1.0.1' find . -name Makefile -delete # restore reprof.spec which is removed in the build process if [ ! -e reprof.spec ] ; then sed 's/@VERSION@/1.0.1/' reprof.spec.in > reprof.spec ; fi dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/reprof.substvars debian/librg-reprof-bundle-perl.substvars debian/files rm -fr -- debian/reprof/ debian/tmp/ debian/librg-reprof-bundle-perl/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) make[1]: Leaving directory '/build/reprof-1.0.1' debian/rules build dh build dh_testdir dh_update_autotools_config dh_autoreconf find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.before grep -q ^XDT_ configure.ac autoreconf -f -i find ! -ipath "./debian/*" -a ! \( -path '*/.git/*' -o -path '*/.hg/*' -o -path '*/.bzr/*' -o -path '*/.svn/*' -o -path '*/CVS/*' \) -a -type f -exec md5sum {} + -o -type l -printf "symlink %p " > debian/autoreconf.after dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating Build.PL config.status: creating examples/Makefile config.status: creating lib/Makefile config.status: creating lib/RG/Makefile config.status: creating lib/RG/Reprof/Makefile config.status: creating reprof.spec config.status: creating scripts/Makefile config.status: creating share/Makefile debian/rules override_dh_auto_build make[1]: Entering directory '/build/reprof-1.0.1' # Build process somehow removes lib/RG/Reprof.pm # make sure it exists to be able to build twice in a row dh_auto_build make -j8 make[2]: Entering directory '/build/reprof-1.0.1' Making all in examples make[3]: Entering directory '/build/reprof-1.0.1/examples' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reprof-1.0.1/examples' Making all in scripts make[3]: Entering directory '/build/reprof-1.0.1/scripts' sed -e 's|__bindir__|/usr/bin|g;s|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/reprof|g;s|__pkgdatadir__|/usr/share/reprof|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|1.0.1|g;' "reprof" | \ pod2man -c 'User Commands' -r "1.0.1" -name REPROF > "reprof.1" make[3]: Leaving directory '/build/reprof-1.0.1/scripts' Making all in lib make[3]: Entering directory '/build/reprof-1.0.1/lib' Making all in RG make[4]: Entering directory '/build/reprof-1.0.1/lib/RG' Making all in Reprof make[5]: Entering directory '/build/reprof-1.0.1/lib/RG/Reprof' make[5]: Nothing to be done for 'all'. make[5]: Leaving directory '/build/reprof-1.0.1/lib/RG/Reprof' make[5]: Entering directory '/build/reprof-1.0.1/lib/RG' make[5]: Nothing to be done for 'all-am'. make[5]: Leaving directory '/build/reprof-1.0.1/lib/RG' make[4]: Leaving directory '/build/reprof-1.0.1/lib/RG' make[4]: Entering directory '/build/reprof-1.0.1/lib' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/build/reprof-1.0.1/lib' make[3]: Leaving directory '/build/reprof-1.0.1/lib' Making all in share make[3]: Entering directory '/build/reprof-1.0.1/share' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reprof-1.0.1/share' make[3]: Entering directory '/build/reprof-1.0.1' perl Build.PL installdirs=vendor && perl Build && touch build-stamp Can't find dist packages without a MANIFEST file Run 'Build manifest' to generate one WARNING: Possible missing or corrupt 'MANIFEST' file. Nothing to enter for 'provides' field in metafile. Created MYMETA.yml and MYMETA.json Creating new 'Build' script for 'reprof' version '1.0.1' Building reprof make[3]: Leaving directory '/build/reprof-1.0.1' make[2]: Leaving directory '/build/reprof-1.0.1' if [ ! -e lib/RG/Reprof.pm ] ; then cp lib/RG/Reprof.pm.mk lib/RG/Reprof.pm ; fi make[1]: Leaving directory '/build/reprof-1.0.1' dh_auto_test make -j8 check VERBOSE=1 make[1]: Entering directory '/build/reprof-1.0.1' Making check in examples make[2]: Entering directory '/build/reprof-1.0.1/examples' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reprof-1.0.1/examples' Making check in scripts make[2]: Entering directory '/build/reprof-1.0.1/scripts' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reprof-1.0.1/scripts' Making check in lib make[2]: Entering directory '/build/reprof-1.0.1/lib' Making check in RG make[3]: Entering directory '/build/reprof-1.0.1/lib/RG' Making check in Reprof make[4]: Entering directory '/build/reprof-1.0.1/lib/RG/Reprof' make[4]: Nothing to be done for 'check'. make[4]: Leaving directory '/build/reprof-1.0.1/lib/RG/Reprof' make[4]: Entering directory '/build/reprof-1.0.1/lib/RG' make[4]: Nothing to be done for 'check-am'. make[4]: Leaving directory '/build/reprof-1.0.1/lib/RG' make[3]: Leaving directory '/build/reprof-1.0.1/lib/RG' make[3]: Entering directory '/build/reprof-1.0.1/lib' make[3]: Nothing to be done for 'check-am'. make[3]: Leaving directory '/build/reprof-1.0.1/lib' make[2]: Leaving directory '/build/reprof-1.0.1/lib' Making check in share make[2]: Entering directory '/build/reprof-1.0.1/share' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reprof-1.0.1/share' make[2]: Entering directory '/build/reprof-1.0.1' make[2]: Nothing to be done for 'check-am'. make[2]: Leaving directory '/build/reprof-1.0.1' make[1]: Leaving directory '/build/reprof-1.0.1' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary dh binary dh_testroot dh_prep rm -f -- debian/reprof.substvars debian/librg-reprof-bundle-perl.substvars rm -fr -- debian/.debhelper/generated/reprof/ debian/reprof/ debian/tmp/ debian/.debhelper/generated/librg-reprof-bundle-perl/ debian/librg-reprof-bundle-perl/ dh_installdirs rm -f debian/librg-reprof-bundle-perl.debhelper.log debian/reprof.debhelper.log debian/rules override_dh_auto_install make[1]: Entering directory '/build/reprof-1.0.1' # The following will run: perl Build install dh_auto_install install -d /build/reprof-1.0.1/debian/tmp make -j8 install DESTDIR=/build/reprof-1.0.1/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/build/reprof-1.0.1' Making install in examples make[3]: Entering directory '/build/reprof-1.0.1/examples' make[4]: Entering directory '/build/reprof-1.0.1/examples' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/reprof-1.0.1/debian/tmp/usr/share/doc/reprof/examples' /usr/bin/install -c -m 644 ./example.Q ./example.Q.reprof ./example.fasta ./example.fasta.reprof ./mutations.txt ./mutations_example.Q.reprof ./mutations_example.Q.reprof_F172P ./mutations_example.Q.reprof_M1Q ./mutations_example.Q.reprof_N34Y ./mutations_example.Q.reprof_ORI '/build/reprof-1.0.1/debian/tmp/usr/share/doc/reprof/examples' make[4]: Leaving directory '/build/reprof-1.0.1/examples' make[3]: Leaving directory '/build/reprof-1.0.1/examples' Making install in scripts make[3]: Entering directory '/build/reprof-1.0.1/scripts' make[4]: Entering directory '/build/reprof-1.0.1/scripts' /bin/mkdir -p '/build/reprof-1.0.1/debian/tmp/usr/bin' /bin/mkdir -p '/build/reprof-1.0.1/debian/tmp/usr/share/man/man1' /usr/bin/install -c reprof '/build/reprof-1.0.1/debian/tmp/usr/bin' make install-exec-hook /usr/bin/install -c -m 644 reprof.1 '/build/reprof-1.0.1/debian/tmp/usr/share/man/man1' make[5]: Entering directory '/build/reprof-1.0.1/scripts' sed -i -e 's|__bindir__|/usr/bin|g;s|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/reprof|g;s|__pkgdatadir__|/usr/share/reprof|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|1.0.1|g;' "/build/reprof-1.0.1/debian/tmp/usr/bin/reprof" make install-data-hook make[5]: Leaving directory '/build/reprof-1.0.1/scripts' make[5]: Entering directory '/build/reprof-1.0.1/scripts' sed -i -e 's|__bindir__|/usr/bin|g;s|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/reprof|g;s|__pkgdatadir__|/usr/share/reprof|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|1.0.1|g;' "/build/reprof-1.0.1/debian/tmp/usr/share/man/man1/reprof.1" make[5]: Leaving directory '/build/reprof-1.0.1/scripts' make[4]: Leaving directory '/build/reprof-1.0.1/scripts' make[3]: Leaving directory '/build/reprof-1.0.1/scripts' Making install in lib make[3]: Entering directory '/build/reprof-1.0.1/lib' Making install in RG make[4]: Entering directory '/build/reprof-1.0.1/lib/RG' Making install in Reprof make[5]: Entering directory '/build/reprof-1.0.1/lib/RG/Reprof' make[6]: Entering directory '/build/reprof-1.0.1/lib/RG/Reprof' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/reprof-1.0.1/lib/RG/Reprof' make[5]: Leaving directory '/build/reprof-1.0.1/lib/RG/Reprof' make[5]: Entering directory '/build/reprof-1.0.1/lib/RG' make[6]: Entering directory '/build/reprof-1.0.1/lib/RG' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/reprof-1.0.1/lib/RG' make[5]: Leaving directory '/build/reprof-1.0.1/lib/RG' make[4]: Leaving directory '/build/reprof-1.0.1/lib/RG' make[4]: Entering directory '/build/reprof-1.0.1/lib' make[5]: Entering directory '/build/reprof-1.0.1/lib' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reprof-1.0.1/lib' make[4]: Leaving directory '/build/reprof-1.0.1/lib' make[3]: Leaving directory '/build/reprof-1.0.1/lib' Making install in share make[3]: Entering directory '/build/reprof-1.0.1/share' make[4]: Entering directory '/build/reprof-1.0.1/share' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/reprof-1.0.1/debian/tmp/usr/share/reprof' /usr/bin/install -c -m 644 ./a.model ./b.model ./bb.model ./bu.model ./fa.model ./fb.model ./fbb.model ./fbu.model ./fu.model ./fub.model ./fuu.model ./u.model ./ub.model ./uu.model ./a.features ./b.features ./bb.features ./bu.features ./fa.features ./fb.features ./fbb.features ./fbu.features ./fu.features ./fub.features ./fuu.features ./u.features ./ub.features ./uu.features '/build/reprof-1.0.1/debian/tmp/usr/share/reprof' make[4]: Leaving directory '/build/reprof-1.0.1/share' make[3]: Leaving directory '/build/reprof-1.0.1/share' make[3]: Entering directory '/build/reprof-1.0.1' make[4]: Entering directory '/build/reprof-1.0.1' make[4]: Nothing to be done for 'install-exec-am'. perl Build install destdir=/build/reprof-1.0.1/debian/tmp create_packlist=0 Building reprof Installing /build/reprof-1.0.1/debian/tmp/usr/share/perl5/RG/Reprof.pm Installing /build/reprof-1.0.1/debian/tmp/usr/share/perl5/RG/Reprof/fasta.pm Installing /build/reprof-1.0.1/debian/tmp/usr/share/perl5/RG/Reprof/blastPsiMat.pm Installing /build/reprof-1.0.1/debian/tmp/usr/share/perl5/RG/Reprof/Converter.pm Installing /build/reprof-1.0.1/debian/tmp/usr/share/man/man3/RG::Reprof.3pm make[4]: Leaving directory '/build/reprof-1.0.1' make[3]: Leaving directory '/build/reprof-1.0.1' make[2]: Leaving directory '/build/reprof-1.0.1' # But we also need this to get the correct script DESTDIR=/build/reprof-1.0.1/debian/tmp make install make[2]: Entering directory '/build/reprof-1.0.1' Making install in examples make[3]: Entering directory '/build/reprof-1.0.1/examples' make[4]: Entering directory '/build/reprof-1.0.1/examples' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/reprof-1.0.1/debian/tmp/usr/share/doc/reprof/examples' /usr/bin/install -c -m 644 ./example.Q ./example.Q.reprof ./example.fasta ./example.fasta.reprof ./mutations.txt ./mutations_example.Q.reprof ./mutations_example.Q.reprof_F172P ./mutations_example.Q.reprof_M1Q ./mutations_example.Q.reprof_N34Y ./mutations_example.Q.reprof_ORI '/build/reprof-1.0.1/debian/tmp/usr/share/doc/reprof/examples' make[4]: Leaving directory '/build/reprof-1.0.1/examples' make[3]: Leaving directory '/build/reprof-1.0.1/examples' Making install in scripts make[3]: Entering directory '/build/reprof-1.0.1/scripts' make[4]: Entering directory '/build/reprof-1.0.1/scripts' /bin/mkdir -p '/build/reprof-1.0.1/debian/tmp/usr/bin' /usr/bin/install -c reprof '/build/reprof-1.0.1/debian/tmp/usr/bin' make install-exec-hook make[5]: Entering directory '/build/reprof-1.0.1/scripts' sed -i -e 's|__bindir__|/usr/bin|g;s|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/reprof|g;s|__pkgdatadir__|/usr/share/reprof|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|1.0.1|g;' "/build/reprof-1.0.1/debian/tmp/usr/bin/reprof" make[5]: Leaving directory '/build/reprof-1.0.1/scripts' /bin/mkdir -p '/build/reprof-1.0.1/debian/tmp/usr/share/man/man1' /usr/bin/install -c -m 644 reprof.1 '/build/reprof-1.0.1/debian/tmp/usr/share/man/man1' make install-data-hook make[5]: Entering directory '/build/reprof-1.0.1/scripts' sed -i -e 's|__bindir__|/usr/bin|g;s|__datadir__|/usr/share|g;s|__docdir__|/usr/share/doc/reprof|g;s|__pkgdatadir__|/usr/share/reprof|g;s|__PREFIX__|/usr|g;s|__sysconfdir__|/etc|g;s|__VERSION__|1.0.1|g;' "/build/reprof-1.0.1/debian/tmp/usr/share/man/man1/reprof.1" make[5]: Leaving directory '/build/reprof-1.0.1/scripts' make[4]: Leaving directory '/build/reprof-1.0.1/scripts' make[3]: Leaving directory '/build/reprof-1.0.1/scripts' Making install in lib make[3]: Entering directory '/build/reprof-1.0.1/lib' Making install in RG make[4]: Entering directory '/build/reprof-1.0.1/lib/RG' Making install in Reprof make[5]: Entering directory '/build/reprof-1.0.1/lib/RG/Reprof' make[6]: Entering directory '/build/reprof-1.0.1/lib/RG/Reprof' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/reprof-1.0.1/lib/RG/Reprof' make[5]: Leaving directory '/build/reprof-1.0.1/lib/RG/Reprof' make[5]: Entering directory '/build/reprof-1.0.1/lib/RG' make[6]: Entering directory '/build/reprof-1.0.1/lib/RG' make[6]: Nothing to be done for 'install-exec-am'. make[6]: Nothing to be done for 'install-data-am'. make[6]: Leaving directory '/build/reprof-1.0.1/lib/RG' make[5]: Leaving directory '/build/reprof-1.0.1/lib/RG' make[4]: Leaving directory '/build/reprof-1.0.1/lib/RG' make[4]: Entering directory '/build/reprof-1.0.1/lib' make[5]: Entering directory '/build/reprof-1.0.1/lib' make[5]: Nothing to be done for 'install-exec-am'. make[5]: Nothing to be done for 'install-data-am'. make[5]: Leaving directory '/build/reprof-1.0.1/lib' make[4]: Leaving directory '/build/reprof-1.0.1/lib' make[3]: Leaving directory '/build/reprof-1.0.1/lib' Making install in share make[3]: Entering directory '/build/reprof-1.0.1/share' make[4]: Entering directory '/build/reprof-1.0.1/share' make[4]: Nothing to be done for 'install-exec-am'. /bin/mkdir -p '/build/reprof-1.0.1/debian/tmp/usr/share/reprof' /usr/bin/install -c -m 644 ./a.model ./b.model ./bb.model ./bu.model ./fa.model ./fb.model ./fbb.model ./fbu.model ./fu.model ./fub.model ./fuu.model ./u.model ./ub.model ./uu.model ./a.features ./b.features ./bb.features ./bu.features ./fa.features ./fb.features ./fbb.features ./fbu.features ./fu.features ./fub.features ./fuu.features ./u.features ./ub.features ./uu.features '/build/reprof-1.0.1/debian/tmp/usr/share/reprof' make[4]: Leaving directory '/build/reprof-1.0.1/share' make[3]: Leaving directory '/build/reprof-1.0.1/share' make[3]: Entering directory '/build/reprof-1.0.1' make[4]: Entering directory '/build/reprof-1.0.1' make[4]: Nothing to be done for 'install-exec-am'. perl Build install destdir=/build/reprof-1.0.1/debian/tmp create_packlist=0 Building reprof make[4]: Leaving directory '/build/reprof-1.0.1' make[3]: Leaving directory '/build/reprof-1.0.1' make[2]: Leaving directory '/build/reprof-1.0.1' make[1]: Leaving directory '/build/reprof-1.0.1' dh_install install -d debian/reprof//usr cp --reflink=auto -a debian/tmp/usr/bin debian/reprof//usr/ install -d debian/reprof//usr/share/doc/reprof cp --reflink=auto -a debian/tmp/usr/share/doc/reprof/examples debian/reprof//usr/share/doc/reprof/ install -d debian/reprof//usr/share/man cp --reflink=auto -a debian/tmp/usr/share/man/man1 debian/reprof//usr/share/man/ install -d debian/.debhelper/generated/reprof install -d debian/librg-reprof-bundle-perl//usr/share cp --reflink=auto -a debian/tmp/usr/share/perl5 debian/tmp/usr/share/reprof debian/librg-reprof-bundle-perl//usr/share/ install -d debian/librg-reprof-bundle-perl//usr/share/man cp --reflink=auto -a debian/tmp/usr/share/man/man3 debian/librg-reprof-bundle-perl//usr/share/man/ install -d debian/.debhelper/generated/librg-reprof-bundle-perl dh_installdocs cp --reflink=auto -a ./debian/README.test debian/reprof/usr/share/doc/reprof cp --reflink=auto -a ./debian/tests/installation-test debian/reprof/usr/share/doc/reprof cp --reflink=auto -a ./debian/tests/test-models.t debian/reprof/usr/share/doc/reprof chown -R 0:0 debian/reprof/usr/share/doc chmod -R u\+rw,go=rX debian/reprof/usr/share/doc install -p -m0644 debian/copyright debian/reprof/usr/share/doc/reprof/copyright install -d debian/librg-reprof-bundle-perl/usr/share/doc/librg-reprof-bundle-perl install -p -m0644 debian/copyright debian/librg-reprof-bundle-perl/usr/share/doc/librg-reprof-bundle-perl/copyright dh_installchangelogs install -p -m0644 debian/changelog debian/reprof/usr/share/doc/reprof/changelog.Debian install -p -m0644 ./ChangeLog debian/reprof/usr/share/doc/reprof/changelog install -p -m0644 debian/changelog debian/librg-reprof-bundle-perl/usr/share/doc/librg-reprof-bundle-perl/changelog.Debian install -p -m0644 ./ChangeLog debian/librg-reprof-bundle-perl/usr/share/doc/librg-reprof-bundle-perl/changelog dh_installexamples dh_installman man-recode --to-code UTF-8 --suffix .dh-new debian/reprof/usr/share/man/man1/reprof.1 man-recode --to-code UTF-8 --suffix .dh-new debian/librg-reprof-bundle-perl/usr/share/man/man3/RG::Reprof.3pm mv debian/reprof/usr/share/man/man1/reprof.1.dh-new debian/reprof/usr/share/man/man1/reprof.1 chmod 0644 -- debian/reprof/usr/share/man/man1/reprof.1 mv debian/librg-reprof-bundle-perl/usr/share/man/man3/RG::Reprof.3pm.dh-new debian/librg-reprof-bundle-perl/usr/share/man/man3/RG::Reprof.3pm chmod 0644 -- debian/librg-reprof-bundle-perl/usr/share/man/man3/RG::Reprof.3pm dh_installcatalogs dh_installcron dh_installdebconf install -d debian/reprof/DEBIAN install -d debian/librg-reprof-bundle-perl/DEBIAN dh_installemacsen dh_installifupdown dh_installinfo dh_installinit dh_installsystemd dh_installsystemduser dh_installmenu dh_installmime dh_installmodules dh_installlogcheck dh_installlogrotate dh_installpam dh_installppp dh_installudev dh_installgsettings dh_installinitramfs dh_installalternatives dh_bugfiles dh_ucf dh_lintian dh_gconf dh_gconf: warning: Please migrate to dh_installgsettings; gconf + dh_gconf is scheduled for removal. dh_icons dh_perl (grep -a -s -v perl:Depends debian/reprof.substvars; echo perl:Depends=perl:any) > debian/reprof.substvars.new mv debian/reprof.substvars.new debian/reprof.substvars (grep -a -s -v perl:Depends debian/librg-reprof-bundle-perl.substvars; echo perl:Depends=perl:any) > debian/librg-reprof-bundle-perl.substvars.new mv debian/librg-reprof-bundle-perl.substvars.new debian/librg-reprof-bundle-perl.substvars rmdir --ignore-fail-on-non-empty --parents debian/librg-reprof-bundle-perl/usr/share/perl5 dh_usrlocal dh_link dh_installwm dh_installxfonts dh_strip_nondeterminism rm -f debian/librg-reprof-bundle-perl.debhelper.log debian/reprof.debhelper.log debian/rules override_dh_compress make[1]: Entering directory '/build/reprof-1.0.1' dh_compress -Xexample.Q cd debian/reprof cd debian/librg-reprof-bundle-perl chmod a-x usr/share/doc/reprof/changelog usr/share/doc/reprof/changelog.Debian usr/share/man/man1/reprof.1 chmod a-x usr/share/doc/librg-reprof-bundle-perl/changelog usr/share/doc/librg-reprof-bundle-perl/changelog.Debian usr/share/man/man3/RG::Reprof.3pm gzip -9nf usr/share/doc/reprof/changelog usr/share/doc/reprof/changelog.Debian usr/share/man/man1/reprof.1 gzip -9nf usr/share/doc/librg-reprof-bundle-perl/changelog usr/share/doc/librg-reprof-bundle-perl/changelog.Debian usr/share/man/man3/RG::Reprof.3pm cd '/build/reprof-1.0.1' cd '/build/reprof-1.0.1' make[1]: Leaving directory '/build/reprof-1.0.1' dh_fixperms find debian/reprof -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/librg-reprof-bundle-perl -true -print0 2>/dev/null | xargs -0r chown --no-dereference 0:0 find debian/reprof ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/librg-reprof-bundle-perl ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/librg-reprof-bundle-perl/usr/share/doc -type f -a -true -a ! -regex 'debian/librg-reprof-bundle-perl/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/reprof/usr/share/doc -type f -a -true -a ! -regex 'debian/reprof/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/librg-reprof-bundle-perl/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/reprof/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/librg-reprof-bundle-perl/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/librg-reprof-bundle-perl/usr/share/perl5 -type f -perm -5 -name '*.pm' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a-X find debian/reprof/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/librg-reprof-bundle-perl -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/reprof -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/reprof/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing dh_installdeb dh_gencontrol echo misc:Depends= >> debian/reprof.substvars echo misc:Pre-Depends= >> debian/reprof.substvars dpkg-gencontrol -preprof -ldebian/changelog -Tdebian/reprof.substvars -Pdebian/reprof echo misc:Depends= >> debian/librg-reprof-bundle-perl.substvars echo misc:Pre-Depends= >> debian/librg-reprof-bundle-perl.substvars dpkg-gencontrol -plibrg-reprof-bundle-perl -ldebian/changelog -Tdebian/librg-reprof-bundle-perl.substvars -Pdebian/librg-reprof-bundle-perl chmod 0644 -- debian/reprof/DEBIAN/control chown 0:0 -- debian/reprof/DEBIAN/control chmod 0644 -- debian/librg-reprof-bundle-perl/DEBIAN/control chown 0:0 -- debian/librg-reprof-bundle-perl/DEBIAN/control dh_md5sums cd debian/librg-reprof-bundle-perl >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums cd debian/reprof >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/reprof/DEBIAN/md5sums chown 0:0 -- debian/reprof/DEBIAN/md5sums chmod 0644 -- debian/librg-reprof-bundle-perl/DEBIAN/md5sums chown 0:0 -- debian/librg-reprof-bundle-perl/DEBIAN/md5sums dh_builddeb dpkg-deb --build debian/reprof .. dpkg-deb: building package 'reprof' in '../reprof_1.0.1-7_all.deb'. dpkg-deb --build debian/librg-reprof-bundle-perl .. dpkg-deb: building package 'librg-reprof-bundle-perl' in '../librg-reprof-bundle-perl_1.0.1-7_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../reprof_1.0.1-7_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/12083 and its subdirectories I: Current time: Mon Aug 9 21:30:20 -12 2021 I: pbuilder-time-stamp: 1628587820 Tue Aug 10 09:30:23 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink11-arm64.debian.net. Tue Aug 10 09:30:23 UTC 2021 I: Preparing to do remote build '2' on codethink11-arm64.debian.net. Tue Aug 10 09:32:00 UTC 2021 I: Deleting $TMPDIR on codethink11-arm64.debian.net. Tue Aug 10 09:32:01 UTC 2021 I: reprof_1.0.1-7_arm64.changes: Format: 1.8 Date: Thu, 19 Sep 2019 11:32:48 +0200 Source: reprof Binary: librg-reprof-bundle-perl reprof Architecture: all Version: 1.0.1-7 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: librg-reprof-bundle-perl - protein secondary structure and accessibility predictor (perl mod reprof - protein secondary structure and accessibility predictor Changes: reprof (1.0.1-7) unstable; urgency=medium . [ Xavier Guimard ] * Fix autopkgtest control for autodep8+pkg-perl-autopkgtest transition Closes: ##940673 . [ Andreas Tille ] * debhelper-compat 12 * Standards-Version: 4.4.0 * Remove trailing whitespace in debian/changelog * Remove trailing whitespace in debian/copyright * Remove trailing whitespace in debian/rules * Use secure URI in Homepage field. * Set upstream metadata fields: Bug-Submit. Checksums-Sha1: 7e48b9f23b5c4519859fd36e291dc74cfa40f713 7481240 librg-reprof-bundle-perl_1.0.1-7_all.deb 521aea1c77b0cad26da5ec466b64cbbba6cfa01f 15880 reprof_1.0.1-7_all.deb abcc93345b6f03a3f19ec09d8ef7ef1f3bd53c70 4882 reprof_1.0.1-7_arm64.buildinfo Checksums-Sha256: 01694291119c799c540f7c4934db3d5a9d066198ab245ab095274a2f31191510 7481240 librg-reprof-bundle-perl_1.0.1-7_all.deb 04313319d3e434de6171d7eae5268816a49baa1b0a2c0ec9cee0ae807f151826 15880 reprof_1.0.1-7_all.deb 79be24684453fa55179a8014cde34a2c9b073cb60479da36fd7a9d0f840e2e24 4882 reprof_1.0.1-7_arm64.buildinfo Files: 5c90e3e20d8d7214e8d955f0e1723aa8 7481240 perl optional librg-reprof-bundle-perl_1.0.1-7_all.deb 238ce678520a44254c5f806dd30c2f4f 15880 science optional reprof_1.0.1-7_all.deb 89dd919fb9215b3c54bf888ca28d7c07 4882 science optional reprof_1.0.1-7_arm64.buildinfo Tue Aug 10 09:32:02 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.WVil1thl9V/reprof_1.0.1-7.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.WVil1thl9V/reprof_1.0.1-7.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.WVil1thl9V/reprof_1.0.1-7.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.WVil1thl9V/b1/reprof_1.0.1-7_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.WVil1thl9V/b2/reprof_1.0.1-7_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.304s) 0.304s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.083s) 0.083s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Tue Aug 10 09:32:03 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Tue Aug 10 09:32:03 UTC 2021 I: reprof from bullseye built successfully and reproducibly on arm64. Tue Aug 10 09:32:04 UTC 2021 I: Submitting .buildinfo files to external archives: Tue Aug 10 09:32:04 UTC 2021 I: Submitting 8.0K b1/reprof_1.0.1-7_arm64.buildinfo.asc Tue Aug 10 09:32:05 UTC 2021 I: Submitting 8.0K b2/reprof_1.0.1-7_arm64.buildinfo.asc Tue Aug 10 09:32:06 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Aug 10 09:32:06 UTC 2021 I: Done submitting .buildinfo files. Tue Aug 10 09:32:06 UTC 2021 I: Removing signed reprof_1.0.1-7_arm64.buildinfo.asc files: removed './b1/reprof_1.0.1-7_arm64.buildinfo.asc' removed './b2/reprof_1.0.1-7_arm64.buildinfo.asc'