Sun Aug 22 05:20:17 UTC 2021 I: starting to build r-bioc-bsgenome/bullseye/arm64 on jenkins on '2021-08-22 05:19' Sun Aug 22 05:20:17 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_25/42185/console.log Sun Aug 22 05:20:17 UTC 2021 I: Downloading source for bullseye/r-bioc-bsgenome=1.58.0-1 --2021-08-22 05:20:17-- http://cdn-fastly.deb.debian.org/debian/pool/main/r/r-bioc-bsgenome/r-bioc-bsgenome_1.58.0-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2419 (2.4K) Saving to: ‘r-bioc-bsgenome_1.58.0-1.dsc’ 0K .. 100% 3.17M=0.001s 2021-08-22 05:20:17 (3.17 MB/s) - ‘r-bioc-bsgenome_1.58.0-1.dsc’ saved [2419/2419] Sun Aug 22 05:20:17 UTC 2021 I: r-bioc-bsgenome_1.58.0-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: r-bioc-bsgenome Binary: r-bioc-bsgenome Architecture: all Version: 1.58.0-1 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/BSgenome/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-bsgenome Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-bsgenome.git Testsuite: autopkgtest, autopkgtest-pkg-r Testsuite-Triggers: r-bioc-biovizbase Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.13.8), r-bioc-s4vectors (>= 0.17.28), r-bioc-iranges (>= 2.13.16), r-bioc-genomeinfodb (>= 1.25.6), r-bioc-genomicranges (>= 1.31.10), r-bioc-biostrings (>= 2.47.6), r-bioc-rtracklayer (>= 1.39.7), r-cran-matrixstats, r-bioc-xvector (>= 0.29.3), r-bioc-rsamtools Package-List: r-bioc-bsgenome deb gnu-r optional arch=all Checksums-Sha1: bef505dd7a9e44e1a7c6d739cff177e9f903b495 6076433 r-bioc-bsgenome_1.58.0.orig.tar.gz b3a31c5b613bcdc41a9388b4c967ef9c6a5cf3b6 10316 r-bioc-bsgenome_1.58.0-1.debian.tar.xz Checksums-Sha256: 9893e5fe00181c6234fbffce3e9d86647a6ed9ba9a3f0cf7abfa946c72af7bbd 6076433 r-bioc-bsgenome_1.58.0.orig.tar.gz f4e8d3ab0d2b1d0d3f044289e41143cad0f753b2f589bb32e050e54531738612 10316 r-bioc-bsgenome_1.58.0-1.debian.tar.xz Files: 6034657e50ed6a6f4a8ac7188f69e721 6076433 r-bioc-bsgenome_1.58.0.orig.tar.gz ae2dc59b5c534232c7a10c98a8bba189 10316 r-bioc-bsgenome_1.58.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+hVTYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEasQ/9G2dKqM84UM9qpKTTBgpF4Lua/oWx/IK2 Ay0mnqqUGDPD33nq3lYV8siXvuFi11/ydOr/OriXWYQ68uIDIpDVgID6HBCMqKR9 qMzrhHJcd6bUhJjjSQYS0OXsWETn+wba7i5ouGNZgeJf/ZRY64rXhu8r0nFZ1FSa wBtRx3y95ITwJp2hj9Al8C4wBeGxp1ZKEGkzMXlcTl1O15yCjgNf7JyeHZi5tZeB a1KIWpzWLZz2r9rjj08DTNqtMI7e5gNCEj9vxspLj/VufSLn5jp8bhVsG5HRXdyN wQpOF7sHNHRnuvG+aVZhZgROr0pm9uLPMqfGeKQvWKZ5w4WuXC2umF/82MjuD3PV E37zVMCNcer+HeH9bPianaBQZhDFpgT3gSKVuoiLzKtyXkAnBcJOAaWP+bruuSwN bxPQ7RVB++NHWJ1P6N4MzHzaLsn/b2gAQMS+eiyEOqD+V0UqK12gneQrSLywW5/2 B0A1hdHFlSRrS+JGUxyl9WV6TpZ2TzqeuM/BrnXZn94EKneIXfbz1cBGZV71JV+E 7Kgi9FjxhwtExSYN/HBDi0dd5Ivv4ggWyMz8VNfgD7T69Q5KHW/IzWtLLhUkkrYn 81ud1SBgCy3jbMyuydnWYa+uSl33eCpYjJ6VTkhLLjisN3Cz/u+MmnLtJJzrsQpj ceNjStatwAU= =TAT7 -----END PGP SIGNATURE----- Sun Aug 22 05:20:17 UTC 2021 I: Checking whether the package is not for us Sun Aug 22 05:20:17 UTC 2021 I: Starting 1st build on remote node codethink15-arm64.debian.net. Sun Aug 22 05:20:17 UTC 2021 I: Preparing to do remote build '1' on codethink15-arm64.debian.net. Sun Aug 22 05:23:51 UTC 2021 I: Deleting $TMPDIR on codethink15-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Sep 23 23:43:20 -12 2022 I: pbuilder-time-stamp: 1664019800 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-bsgenome_1.58.0-1.dsc] I: copying [./r-bioc-bsgenome_1.58.0.orig.tar.gz] I: copying [./r-bioc-bsgenome_1.58.0-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.NBR93qtL/trustedkeys.kbx': General error gpgv: Signature made Tue Nov 3 01:03:50 2020 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./r-bioc-bsgenome_1.58.0-1.dsc dpkg-source: info: extracting r-bioc-bsgenome in r-bioc-bsgenome-1.58.0 dpkg-source: info: unpacking r-bioc-bsgenome_1.58.0.orig.tar.gz dpkg-source: info: unpacking r-bioc-bsgenome_1.58.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove_paragraphs_bound_to_fail_from_vignette.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/24157/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='24157' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.BpQfbMcsON/pbuilderrc_rbn9 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.BpQfbMcsON/b1 --logfile b1/build.log r-bioc-bsgenome_1.58.0-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink15-arm64 4.15.0-154-generic #161-Ubuntu SMP Fri Jul 30 13:01:15 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Aug 4 2021 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Jul 28 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Jul 28 2021 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Jul 28 2021 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Jul 28 2021 more -rwsr-xr-x 1 root root 51360 Jul 28 2021 mount -rwxr-xr-x 1 root root 14496 Jul 28 2021 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 2021 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Sep 23 03:47 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Jul 28 2021 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Jul 28 2021 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Jul 28 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/24157/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-biocgenerics (>= 0.13.8), r-bioc-s4vectors (>= 0.17.28), r-bioc-iranges (>= 2.13.16), r-bioc-genomeinfodb (>= 1.25.6), r-bioc-genomicranges (>= 1.31.10), r-bioc-biostrings (>= 2.47.6), r-bioc-rtracklayer (>= 1.39.7), r-cran-matrixstats, r-bioc-xvector (>= 0.29.3), r-bioc-rsamtools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biocgenerics (>= 0.13.8); however: Package r-bioc-biocgenerics is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-s4vectors (>= 0.17.28); however: Package r-bioc-s4vectors is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-iranges (>= 2.13.16); however: Package r-bioc-iranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomeinfodb (>= 1.25.6); however: Package r-bioc-genomeinfodb is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-genomicranges (>= 1.31.10); however: Package r-bioc-genomicranges is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-biostrings (>= 2.47.6); however: Package r-bioc-biostrings is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rtracklayer (>= 1.39.7); however: Package r-bioc-rtracklayer is not installed. pbuilder-satisfydepends-dummy depends on r-cran-matrixstats; however: Package r-cran-matrixstats is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-xvector (>= 0.29.3); however: Package r-bioc-xvector is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-rsamtools; however: Package r-bioc-rsamtools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gfortran{a} gfortran-10{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libboost-dev{a} libboost1.74-dev{a} libbrotli1{a} libbsd0{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libcurl3-gnutls{a} libcurl4{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-10-dev{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu67{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} liblapack-dev{a} liblapack3{a} libldap-2.4-2{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses5-dev{a} libncurses6{a} libnghttp2-14{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre16-3{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix2{a} libpcre3-dev{a} libpcre32-3{a} libpcrecpp0v5{a} libpipeline1{a} libpixman-1-0{a} libpng-dev{a} libpng16-16{a} libpsl5{a} libreadline-dev{a} libreadline8{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libsub-override-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff5{a} libtimedate-perl{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp6{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6{a} m4{a} man-db{a} openssl{a} pkg-config{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-biocparallel{a} r-bioc-biostrings{a} r-bioc-delayedarray{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicalignments{a} r-bioc-genomicranges{a} r-bioc-iranges{a} r-bioc-matrixgenerics{a} r-bioc-rhtslib{a} r-bioc-rsamtools{a} r-bioc-rtracklayer{a} r-bioc-s4vectors{a} r-bioc-summarizedexperiment{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-bh{a} r-cran-bitops{a} r-cran-crayon{a} r-cran-formatr{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-lambda.r{a} r-cran-lattice{a} r-cran-matrix{a} r-cran-matrixstats{a} r-cran-rcurl{a} r-cran-snow{a} r-cran-xml{a} readline-common{a} sensible-utils{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage libarchive-cpio-perl libclass-c3-xs-perl libclone-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-bioc-annotate r-bioc-shortread r-cran-batchjobs r-cran-batchtools r-cran-codetools r-cran-digest r-cran-doparallel r-cran-mockery r-cran-rmpi r-cran-runit r-cran-survival r-cran-testit r-cran-testthat r-cran-withr r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 205 newly installed, 0 to remove and 0 not upgraded. Need to get 164 MB of archives. After unpacking 505 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-8 [142 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 readline-common all 8.1-1 [73.7 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libreadline8 arm64 8.1-1 [160 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 openssl arm64 1.1.1k-1 [829 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 ca-certificates all 20210119 [158 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 ucf all 3.0043 [74.0 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 dctrl-tools arm64 2.24-3 [101 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 zip arm64 3.0-12 [228 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 unzip arm64 6.0-26 [165 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 libpaper1 arm64 1.1.28+b1 [21.4 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libpaper-utils arm64 1.1.28+b1 [18.3 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libblas3 arm64 3.9.0-3 [101 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 libpng16-16 arm64 1.6.37-3 [289 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 libfreetype6 arm64 2.10.4+dfsg-1 [393 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 fonts-dejavu-core all 2.37-2 [1069 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 fontconfig-config all 2.13.1-4.2 [281 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 libfontconfig1 arm64 2.13.1-4.2 [344 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libpixman-1-0 arm64 0.40.0-1 [444 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libmd0 arm64 1.0.3-3 [27.9 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libbsd0 arm64 0.11.3-1 [106 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 libxcb1 arm64 1.14-3 [138 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libx11-data all 2:1.7.2-1 [311 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 libx11-6 arm64 2:1.7.2-1 [748 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 libxcb-render0 arm64 1.14-3 [111 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 libxcb-shm0 arm64 1.14-3 [101 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 libxext6 arm64 2:1.3.3-1.1 [51.6 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 libxrender1 arm64 1:0.9.10-1 [30.4 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 libcairo2 arm64 1.16.0-5 [648 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1 [69.3 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1 [105 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-3 [222 kB] Get: 67 http://deb.debian.org/debian bullseye/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB] Get: 68 http://deb.debian.org/debian bullseye/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB] Get: 69 http://deb.debian.org/debian bullseye/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB] Get: 70 http://deb.debian.org/debian bullseye/main arm64 libssh2-1 arm64 1.9.0-2 [150 kB] Get: 71 http://deb.debian.org/debian bullseye/main arm64 libcurl4 arm64 7.74.0-1.3+b1 [321 kB] Get: 72 http://deb.debian.org/debian bullseye/main arm64 libglib2.0-0 arm64 2.66.8-1 [1286 kB] Get: 73 http://deb.debian.org/debian bullseye/main arm64 libjpeg62-turbo arm64 1:2.0.6-4 [133 kB] Get: 74 http://deb.debian.org/debian bullseye/main arm64 libgfortran5 arm64 10.2.1-6 [333 kB] Get: 75 http://deb.debian.org/debian bullseye/main arm64 liblapack3 arm64 3.9.0-3 [1541 kB] Get: 76 http://deb.debian.org/debian bullseye/main arm64 fontconfig arm64 2.13.1-4.2 [416 kB] Get: 77 http://deb.debian.org/debian bullseye/main arm64 libfribidi0 arm64 1.0.8-2 [64.8 kB] Get: 78 http://deb.debian.org/debian bullseye/main arm64 libgraphite2-3 arm64 1.3.14-1 [75.6 kB] Get: 79 http://deb.debian.org/debian bullseye/main arm64 libharfbuzz0b arm64 2.7.4-1 [1445 kB] Get: 80 http://deb.debian.org/debian bullseye/main arm64 libthai-data all 0.1.28-3 [170 kB] Get: 81 http://deb.debian.org/debian bullseye/main arm64 libdatrie1 arm64 0.2.13-1 [42.1 kB] Get: 82 http://deb.debian.org/debian bullseye/main arm64 libthai0 arm64 0.1.28-3 [53.0 kB] Get: 83 http://deb.debian.org/debian bullseye/main arm64 libpango-1.0-0 arm64 1.46.2-3 [183 kB] Get: 84 http://deb.debian.org/debian bullseye/main arm64 libpangoft2-1.0-0 arm64 1.46.2-3 [59.4 kB] Get: 85 http://deb.debian.org/debian bullseye/main arm64 libpangocairo-1.0-0 arm64 1.46.2-3 [48.6 kB] Get: 86 http://deb.debian.org/debian bullseye/main arm64 libtcl8.6 arm64 8.6.11+dfsg-1 [964 kB] Get: 87 http://deb.debian.org/debian bullseye/main arm64 libdeflate0 arm64 1.7-1 [47.7 kB] Get: 88 http://deb.debian.org/debian bullseye/main arm64 libjbig0 arm64 2.1-3.1+b2 [27.8 kB] Get: 89 http://deb.debian.org/debian bullseye/main arm64 libwebp6 arm64 0.6.1-2.1 [244 kB] Get: 90 http://deb.debian.org/debian bullseye/main arm64 libtiff5 arm64 4.2.0-1 [276 kB] Get: 91 http://deb.debian.org/debian bullseye/main arm64 libxft2 arm64 2.3.2-2 [51.3 kB] Get: 92 http://deb.debian.org/debian bullseye/main arm64 x11-common all 1:7.7+22 [252 kB] Get: 93 http://deb.debian.org/debian bullseye/main arm64 libxss1 arm64 1:1.2.3-1 [17.8 kB] Get: 94 http://deb.debian.org/debian bullseye/main arm64 libtk8.6 arm64 8.6.11-2 [738 kB] Get: 95 http://deb.debian.org/debian bullseye/main arm64 libice6 arm64 2:1.0.10-1 [55.6 kB] Get: 96 http://deb.debian.org/debian bullseye/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB] Get: 97 http://deb.debian.org/debian bullseye/main arm64 libxt6 arm64 1:1.2.0-1 [176 kB] Get: 98 http://deb.debian.org/debian bullseye/main arm64 r-base-core arm64 4.0.4-1 [24.9 MB] Get: 99 http://deb.debian.org/debian bullseye/main arm64 libgfortran-10-dev arm64 10.2.1-6 [388 kB] Get: 100 http://deb.debian.org/debian bullseye/main arm64 gfortran-10 arm64 10.2.1-6 [8654 kB] Get: 101 http://deb.debian.org/debian bullseye/main arm64 gfortran arm64 4:10.2.1-1 [1424 B] Get: 102 http://deb.debian.org/debian bullseye/main arm64 libblas-dev arm64 3.9.0-3 [107 kB] Get: 103 http://deb.debian.org/debian bullseye/main arm64 liblapack-dev arm64 3.9.0-3 [2758 kB] Get: 104 http://deb.debian.org/debian bullseye/main arm64 libncurses6 arm64 6.2+20201114-2 [93.2 kB] Get: 105 http://deb.debian.org/debian bullseye/main arm64 libncurses-dev arm64 6.2+20201114-2 [335 kB] Get: 106 http://deb.debian.org/debian bullseye/main arm64 libncurses5-dev arm64 6.2+20201114-2 [936 B] Get: 107 http://deb.debian.org/debian bullseye/main arm64 libreadline-dev arm64 8.1-1 [153 kB] Get: 108 http://deb.debian.org/debian bullseye/main arm64 libjpeg62-turbo-dev arm64 1:2.0.6-4 [255 kB] Get: 109 http://deb.debian.org/debian bullseye/main arm64 libjpeg-dev arm64 1:2.0.6-4 [67.8 kB] Get: 110 http://deb.debian.org/debian bullseye/main arm64 libpcre2-16-0 arm64 10.36-2 [202 kB] Get: 111 http://deb.debian.org/debian bullseye/main arm64 libpcre2-32-0 arm64 10.36-2 [193 kB] Get: 112 http://deb.debian.org/debian bullseye/main arm64 libpcre2-posix2 arm64 10.36-2 [49.0 kB] Get: 113 http://deb.debian.org/debian bullseye/main arm64 libpcre2-dev arm64 10.36-2 [645 kB] Get: 114 http://deb.debian.org/debian bullseye/main arm64 libpcre16-3 arm64 2:8.39-13 [236 kB] Get: 115 http://deb.debian.org/debian bullseye/main arm64 libpcre32-3 arm64 2:8.39-13 [229 kB] Get: 116 http://deb.debian.org/debian bullseye/main arm64 libpcrecpp0v5 arm64 2:8.39-13 [151 kB] Get: 117 http://deb.debian.org/debian bullseye/main arm64 libpcre3-dev arm64 2:8.39-13 [579 kB] Get: 118 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB] Get: 119 http://deb.debian.org/debian bullseye/main arm64 libpng-dev arm64 1.6.37-3 [294 kB] Get: 120 http://deb.debian.org/debian bullseye/main arm64 libbz2-dev arm64 1.0.8-4 [31.5 kB] Get: 121 http://deb.debian.org/debian bullseye/main arm64 liblzma-dev arm64 5.2.5-2 [227 kB] Get: 122 http://deb.debian.org/debian bullseye/main arm64 icu-devtools arm64 67.1-7 [189 kB] Get: 123 http://deb.debian.org/debian bullseye/main arm64 libicu-dev arm64 67.1-7 [9468 kB] Get: 124 http://deb.debian.org/debian bullseye/main arm64 libxmuu1 arm64 2:1.1.2-2+b3 [24.1 kB] Get: 125 http://deb.debian.org/debian bullseye/main arm64 xauth arm64 1:1.1-1 [40.0 kB] Get: 126 http://deb.debian.org/debian bullseye/main arm64 pkg-config arm64 0.29.2-1 [63.6 kB] Get: 127 http://deb.debian.org/debian bullseye/main arm64 r-base-dev all 4.0.4-1 [4484 B] Get: 128 http://deb.debian.org/debian bullseye/main arm64 libfile-which-perl all 1.23-1 [16.6 kB] Get: 129 http://deb.debian.org/debian bullseye/main arm64 libswitch-perl all 2.17-2.1 [20.0 kB] Get: 130 http://deb.debian.org/debian bullseye/main arm64 libencode-locale-perl all 1.05-1.1 [13.2 kB] Get: 131 http://deb.debian.org/debian bullseye/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 132 http://deb.debian.org/debian bullseye/main arm64 libhttp-date-perl all 6.05-1 [10.4 kB] Get: 133 http://deb.debian.org/debian bullseye/main arm64 libio-html-perl all 1.004-2 [16.1 kB] Get: 134 http://deb.debian.org/debian bullseye/main arm64 liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get: 135 http://deb.debian.org/debian bullseye/main arm64 liburi-perl all 5.08-1 [90.6 kB] Get: 136 http://deb.debian.org/debian bullseye/main arm64 libhttp-message-perl all 6.28-1 [79.6 kB] Get: 137 http://deb.debian.org/debian bullseye/main arm64 libparams-util-perl arm64 1.102-1+b1 [25.3 kB] Get: 138 http://deb.debian.org/debian bullseye/main arm64 libsub-install-perl all 0.928-1.1 [10.8 kB] Get: 139 http://deb.debian.org/debian bullseye/main arm64 libdata-optlist-perl all 0.110-1.1 [10.8 kB] Get: 140 http://deb.debian.org/debian bullseye/main arm64 libb-hooks-op-check-perl arm64 0.22-1+b3 [11.2 kB] Get: 141 http://deb.debian.org/debian bullseye/main arm64 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] Get: 142 http://deb.debian.org/debian bullseye/main arm64 libdevel-callchecker-perl arm64 0.008-1+b2 [15.8 kB] Get: 143 http://deb.debian.org/debian bullseye/main arm64 libparams-classify-perl arm64 0.015-1+b3 [25.5 kB] Get: 144 http://deb.debian.org/debian bullseye/main arm64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get: 145 http://deb.debian.org/debian bullseye/main arm64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get: 146 http://deb.debian.org/debian bullseye/main arm64 libmodule-implementation-perl all 0.09-1.1 [12.4 kB] Get: 147 http://deb.debian.org/debian bullseye/main arm64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get: 148 http://deb.debian.org/debian bullseye/main arm64 libclass-load-perl all 0.25-1 [16.1 kB] Get: 149 http://deb.debian.org/debian bullseye/main arm64 libclass-load-xs-perl arm64 0.10-1+b5 [14.5 kB] Get: 150 http://deb.debian.org/debian bullseye/main arm64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get: 151 http://deb.debian.org/debian bullseye/main arm64 libdevel-globaldestruction-perl all 0.14-1.1 [8312 B] Get: 152 http://deb.debian.org/debian bullseye/main arm64 libalgorithm-c3-perl all 0.11-1 [11.7 kB] Get: 153 http://deb.debian.org/debian bullseye/main arm64 libclass-c3-perl all 0.35-1 [22.9 kB] Get: 154 http://deb.debian.org/debian bullseye/main arm64 libmro-compat-perl all 0.13-1 [12.2 kB] Get: 155 http://deb.debian.org/debian bullseye/main arm64 libsub-identify-perl arm64 0.14-1+b3 [11.9 kB] Get: 156 http://deb.debian.org/debian bullseye/main arm64 libdevel-overloadinfo-perl all 0.005-1 [7212 B] Get: 157 http://deb.debian.org/debian bullseye/main arm64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get: 158 http://deb.debian.org/debian bullseye/main arm64 libsub-exporter-perl all 0.987-1 [47.2 kB] Get: 159 http://deb.debian.org/debian bullseye/main arm64 libeval-closure-perl all 0.14-1 [11.5 kB] Get: 160 http://deb.debian.org/debian bullseye/main arm64 libdist-checkconflicts-perl all 0.11-1.1 [10.2 kB] Get: 161 http://deb.debian.org/debian bullseye/main arm64 libmodule-runtime-conflicts-perl all 0.003-1.1 [7156 B] Get: 162 http://deb.debian.org/debian bullseye/main arm64 libsub-name-perl arm64 0.26-1+b1 [13.5 kB] Get: 163 http://deb.debian.org/debian bullseye/main arm64 libpackage-deprecationmanager-perl all 0.17-1.1 [16.6 kB] Get: 164 http://deb.debian.org/debian bullseye/main arm64 libpackage-stash-xs-perl arm64 0.29-1+b2 [19.7 kB] Get: 165 http://deb.debian.org/debian bullseye/main arm64 libmoose-perl arm64 2.2014-2 [802 kB] Get: 166 http://deb.debian.org/debian bullseye/main arm64 libvariable-magic-perl arm64 0.62-1+b3 [44.2 kB] Get: 167 http://deb.debian.org/debian bullseye/main arm64 libb-hooks-endofscope-perl all 0.24-1.1 [18.9 kB] Get: 168 http://deb.debian.org/debian bullseye/main arm64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get: 169 http://deb.debian.org/debian bullseye/main arm64 libcurl3-gnutls arm64 7.74.0-1.3+b1 [318 kB] Get: 170 http://deb.debian.org/debian bullseye/main arm64 libwww-curl-perl arm64 4.17-7+b1 [59.3 kB] Get: 171 http://deb.debian.org/debian bullseye/main arm64 libwww-curl-simple-perl all 0.100191-2 [12.5 kB] Get: 172 http://deb.debian.org/debian bullseye/main arm64 dh-r all 20210303 [41.8 kB] Get: 173 http://deb.debian.org/debian bullseye/main arm64 libboost1.74-dev arm64 1.74.0-9 [9534 kB] Get: 174 http://deb.debian.org/debian bullseye/main arm64 libboost-dev arm64 1.74.0.3 [4548 B] Get: 175 http://deb.debian.org/debian bullseye/main arm64 r-bioc-biocgenerics all 0.36.0-1 [648 kB] Get: 176 http://deb.debian.org/debian bullseye/main arm64 r-bioc-biobase arm64 2.50.0-1 [2228 kB] Get: 177 http://deb.debian.org/debian bullseye/main arm64 r-cran-formatr all 1.7-2 [151 kB] Get: 178 http://deb.debian.org/debian bullseye/main arm64 r-cran-lambda.r all 1.2.4-2 [118 kB] Get: 179 http://deb.debian.org/debian bullseye/main arm64 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get: 180 http://deb.debian.org/debian bullseye/main arm64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get: 181 http://deb.debian.org/debian bullseye/main arm64 r-cran-snow all 1:0.4.3-2 [109 kB] Get: 182 http://deb.debian.org/debian bullseye/main arm64 r-cran-bh all 1.74.0-1 [5196 B] Get: 183 http://deb.debian.org/debian bullseye/main arm64 r-bioc-biocparallel arm64 1.24.1-1 [1139 kB] Get: 184 http://deb.debian.org/debian bullseye/main arm64 r-bioc-s4vectors arm64 0.28.1-1 [2023 kB] Get: 185 http://deb.debian.org/debian bullseye/main arm64 r-bioc-iranges arm64 2.24.1-1 [2198 kB] Get: 186 http://deb.debian.org/debian bullseye/main arm64 r-bioc-zlibbioc all 1.36.0+dfsg-1 [8824 B] Get: 187 http://deb.debian.org/debian bullseye/main arm64 r-bioc-xvector arm64 0.30.0-1 [617 kB] Get: 188 http://deb.debian.org/debian bullseye/main arm64 r-cran-crayon all 1.4.0-1 [143 kB] Get: 189 http://deb.debian.org/debian bullseye/main arm64 r-bioc-biostrings arm64 2.58.0-1 [14.2 MB] Get: 190 http://deb.debian.org/debian bullseye/main arm64 r-cran-lattice arm64 0.20-41-1+b1 [1164 kB] Get: 191 http://deb.debian.org/debian bullseye/main arm64 r-cran-matrix arm64 1.3-2-1 [3559 kB] Get: 192 http://deb.debian.org/debian bullseye/main arm64 r-cran-matrixstats arm64 0.58.0-3 [584 kB] Get: 193 http://deb.debian.org/debian bullseye/main arm64 r-bioc-matrixgenerics all 1.2.1-4 [288 kB] Get: 194 http://deb.debian.org/debian bullseye/main arm64 r-bioc-delayedarray arm64 0.16.1+dfsg-1 [1797 kB] Get: 195 http://deb.debian.org/debian bullseye/main arm64 r-cran-bitops arm64 1.0-6-5 [23.5 kB] Get: 196 http://deb.debian.org/debian bullseye/main arm64 r-cran-rcurl arm64 1.98-1.2-1+b1 [787 kB] Get: 197 http://deb.debian.org/debian bullseye/main arm64 r-bioc-genomeinfodbdata all 1.2.4-1 [10.7 MB] Get: 198 http://deb.debian.org/debian bullseye/main arm64 r-bioc-genomeinfodb all 1.26.2-2 [3905 kB] Get: 199 http://deb.debian.org/debian bullseye/main arm64 r-bioc-genomicranges arm64 1.42.0+dfsg-1 [1855 kB] Get: 200 http://deb.debian.org/debian bullseye/main arm64 r-bioc-summarizedexperiment all 1.20.0+dfsg-1 [1955 kB] Get: 201 http://deb.debian.org/debian bullseye/main arm64 r-bioc-rhtslib arm64 1.22.0+dfsg-1 [993 kB] Get: 202 http://deb.debian.org/debian bullseye/main arm64 r-bioc-rsamtools arm64 2.6.0-1 [3625 kB] Get: 203 http://deb.debian.org/debian bullseye/main arm64 r-bioc-genomicalignments arm64 1.26.0-1 [2195 kB] Get: 204 http://deb.debian.org/debian bullseye/main arm64 r-cran-xml arm64 3.99-0.5-1 [1722 kB] Get: 205 http://deb.debian.org/debian bullseye/main arm64 r-bioc-rtracklayer arm64 1.50.0-1 [7455 kB] Fetched 164 MB in 3s (54.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-8_arm64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../001-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../003-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../005-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../006-libreadline8_8.1-1_arm64.deb ... Unpacking libreadline8:arm64 (8.1-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../007-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package openssl. Preparing to unpack .../008-openssl_1.1.1k-1_arm64.deb ... Unpacking openssl (1.1.1k-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../009-ca-certificates_20210119_all.deb ... Unpacking ca-certificates (20210119) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../010-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../011-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../012-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../013-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../015-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.18-5_arm64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../020-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../021-dctrl-tools_2.24-3_arm64.deb ... Unpacking dctrl-tools (2.24-3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../022-libdebhelper-perl_13.3.4_all.deb ... Unpacking libdebhelper-perl (13.3.4) ... Selecting previously unselected package libtool. Preparing to unpack .../023-libtool_2.4.6-15_all.deb ... Unpacking libtool (2.4.6-15) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../024-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../025-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../026-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../027-libfile-stripnondeterminism-perl_1.12.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.12.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../028-dh-strip-nondeterminism_1.12.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.12.0-1) ... Selecting previously unselected package libelf1:arm64. Preparing to unpack .../029-libelf1_0.183-1_arm64.deb ... Unpacking libelf1:arm64 (0.183-1) ... Selecting previously unselected package dwz. Preparing to unpack .../030-dwz_0.13+20210201-1_arm64.deb ... Unpacking dwz (0.13+20210201-1) ... Selecting previously unselected package libicu67:arm64. Preparing to unpack .../031-libicu67_67.1-7_arm64.deb ... Unpacking libicu67:arm64 (67.1-7) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../032-libxml2_2.9.10+dfsg-6.7_arm64.deb ... Unpacking libxml2:arm64 (2.9.10+dfsg-6.7) ... Selecting previously unselected package gettext. Preparing to unpack .../033-gettext_0.21-4_arm64.deb ... Unpacking gettext (0.21-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../034-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../035-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../036-debhelper_13.3.4_all.deb ... Unpacking debhelper (13.3.4) ... Selecting previously unselected package zip. Preparing to unpack .../037-zip_3.0-12_arm64.deb ... Unpacking zip (3.0-12) ... Selecting previously unselected package unzip. Preparing to unpack .../038-unzip_6.0-26_arm64.deb ... Unpacking unzip (6.0-26) ... Selecting previously unselected package libpaper1:arm64. Preparing to unpack .../039-libpaper1_1.1.28+b1_arm64.deb ... Unpacking libpaper1:arm64 (1.1.28+b1) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../040-libpaper-utils_1.1.28+b1_arm64.deb ... Unpacking libpaper-utils (1.1.28+b1) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../041-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../042-libblas3_3.9.0-3_arm64.deb ... Unpacking libblas3:arm64 (3.9.0-3) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../043-libexpat1_2.2.10-2_arm64.deb ... Unpacking libexpat1:arm64 (2.2.10-2) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../044-libbrotli1_1.0.9-2+b2_arm64.deb ... Unpacking libbrotli1:arm64 (1.0.9-2+b2) ... Selecting previously unselected package libpng16-16:arm64. Preparing to unpack .../045-libpng16-16_1.6.37-3_arm64.deb ... Unpacking libpng16-16:arm64 (1.6.37-3) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../046-libfreetype6_2.10.4+dfsg-1_arm64.deb ... Unpacking libfreetype6:arm64 (2.10.4+dfsg-1) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../047-fonts-dejavu-core_2.37-2_all.deb ... Unpacking fonts-dejavu-core (2.37-2) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../048-fontconfig-config_2.13.1-4.2_all.deb ... Unpacking fontconfig-config (2.13.1-4.2) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../049-libfontconfig1_2.13.1-4.2_arm64.deb ... Unpacking libfontconfig1:arm64 (2.13.1-4.2) ... Selecting previously unselected package libpixman-1-0:arm64. Preparing to unpack .../050-libpixman-1-0_0.40.0-1_arm64.deb ... Unpacking libpixman-1-0:arm64 (0.40.0-1) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../051-libxau6_1%3a1.0.9-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.9-1) ... Selecting previously unselected package libmd0:arm64. Preparing to unpack .../052-libmd0_1.0.3-3_arm64.deb ... Unpacking libmd0:arm64 (1.0.3-3) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../053-libbsd0_0.11.3-1_arm64.deb ... Unpacking libbsd0:arm64 (0.11.3-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../054-libxdmcp6_1%3a1.1.2-3_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../055-libxcb1_1.14-3_arm64.deb ... Unpacking libxcb1:arm64 (1.14-3) ... Selecting previously unselected package libx11-data. Preparing to unpack .../056-libx11-data_2%3a1.7.2-1_all.deb ... Unpacking libx11-data (2:1.7.2-1) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../057-libx11-6_2%3a1.7.2-1_arm64.deb ... Unpacking libx11-6:arm64 (2:1.7.2-1) ... Selecting previously unselected package libxcb-render0:arm64. Preparing to unpack .../058-libxcb-render0_1.14-3_arm64.deb ... Unpacking libxcb-render0:arm64 (1.14-3) ... Selecting previously unselected package libxcb-shm0:arm64. Preparing to unpack .../059-libxcb-shm0_1.14-3_arm64.deb ... Unpacking libxcb-shm0:arm64 (1.14-3) ... Selecting previously unselected package libxext6:arm64. Preparing to unpack .../060-libxext6_2%3a1.3.3-1.1_arm64.deb ... Unpacking libxext6:arm64 (2:1.3.3-1.1) ... Selecting previously unselected package libxrender1:arm64. Preparing to unpack .../061-libxrender1_1%3a0.9.10-1_arm64.deb ... Unpacking libxrender1:arm64 (1:0.9.10-1) ... Selecting previously unselected package libcairo2:arm64. Preparing to unpack .../062-libcairo2_1.16.0-5_arm64.deb ... Unpacking libcairo2:arm64 (1.16.0-5) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../063-libsasl2-modules-db_2.1.27+dfsg-2.1_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../064-libsasl2-2_2.1.27+dfsg-2.1_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:arm64. Preparing to unpack .../065-libldap-2.4-2_2.4.57+dfsg-3_arm64.deb ... Unpacking libldap-2.4-2:arm64 (2.4.57+dfsg-3) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../066-libnghttp2-14_1.43.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.43.0-1) ... Selecting previously unselected package libpsl5:arm64. Preparing to unpack .../067-libpsl5_0.21.0-1.2_arm64.deb ... Unpacking libpsl5:arm64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../068-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:arm64. Preparing to unpack .../069-libssh2-1_1.9.0-2_arm64.deb ... Unpacking libssh2-1:arm64 (1.9.0-2) ... Selecting previously unselected package libcurl4:arm64. Preparing to unpack .../070-libcurl4_7.74.0-1.3+b1_arm64.deb ... Unpacking libcurl4:arm64 (7.74.0-1.3+b1) ... Selecting previously unselected package libglib2.0-0:arm64. Preparing to unpack .../071-libglib2.0-0_2.66.8-1_arm64.deb ... Unpacking libglib2.0-0:arm64 (2.66.8-1) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../072-libjpeg62-turbo_1%3a2.0.6-4_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.0.6-4) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../073-libgfortran5_10.2.1-6_arm64.deb ... Unpacking libgfortran5:arm64 (10.2.1-6) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../074-liblapack3_3.9.0-3_arm64.deb ... Unpacking liblapack3:arm64 (3.9.0-3) ... Selecting previously unselected package fontconfig. Preparing to unpack .../075-fontconfig_2.13.1-4.2_arm64.deb ... Unpacking fontconfig (2.13.1-4.2) ... Selecting previously unselected package libfribidi0:arm64. Preparing to unpack .../076-libfribidi0_1.0.8-2_arm64.deb ... Unpacking libfribidi0:arm64 (1.0.8-2) ... Selecting previously unselected package libgraphite2-3:arm64. Preparing to unpack .../077-libgraphite2-3_1.3.14-1_arm64.deb ... Unpacking libgraphite2-3:arm64 (1.3.14-1) ... Selecting previously unselected package libharfbuzz0b:arm64. Preparing to unpack .../078-libharfbuzz0b_2.7.4-1_arm64.deb ... Unpacking libharfbuzz0b:arm64 (2.7.4-1) ... Selecting previously unselected package libthai-data. Preparing to unpack .../079-libthai-data_0.1.28-3_all.deb ... Unpacking libthai-data (0.1.28-3) ... Selecting previously unselected package libdatrie1:arm64. Preparing to unpack .../080-libdatrie1_0.2.13-1_arm64.deb ... Unpacking libdatrie1:arm64 (0.2.13-1) ... Selecting previously unselected package libthai0:arm64. Preparing to unpack .../081-libthai0_0.1.28-3_arm64.deb ... Unpacking libthai0:arm64 (0.1.28-3) ... Selecting previously unselected package libpango-1.0-0:arm64. Preparing to unpack .../082-libpango-1.0-0_1.46.2-3_arm64.deb ... Unpacking libpango-1.0-0:arm64 (1.46.2-3) ... Selecting previously unselected package libpangoft2-1.0-0:arm64. Preparing to unpack .../083-libpangoft2-1.0-0_1.46.2-3_arm64.deb ... Unpacking libpangoft2-1.0-0:arm64 (1.46.2-3) ... Selecting previously unselected package libpangocairo-1.0-0:arm64. Preparing to unpack .../084-libpangocairo-1.0-0_1.46.2-3_arm64.deb ... Unpacking libpangocairo-1.0-0:arm64 (1.46.2-3) ... Selecting previously unselected package libtcl8.6:arm64. Preparing to unpack .../085-libtcl8.6_8.6.11+dfsg-1_arm64.deb ... Unpacking libtcl8.6:arm64 (8.6.11+dfsg-1) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../086-libdeflate0_1.7-1_arm64.deb ... Unpacking libdeflate0:arm64 (1.7-1) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../087-libjbig0_2.1-3.1+b2_arm64.deb ... Unpacking libjbig0:arm64 (2.1-3.1+b2) ... Selecting previously unselected package libwebp6:arm64. Preparing to unpack .../088-libwebp6_0.6.1-2.1_arm64.deb ... Unpacking libwebp6:arm64 (0.6.1-2.1) ... Selecting previously unselected package libtiff5:arm64. Preparing to unpack .../089-libtiff5_4.2.0-1_arm64.deb ... Unpacking libtiff5:arm64 (4.2.0-1) ... Selecting previously unselected package libxft2:arm64. Preparing to unpack .../090-libxft2_2.3.2-2_arm64.deb ... Unpacking libxft2:arm64 (2.3.2-2) ... Selecting previously unselected package x11-common. Preparing to unpack .../091-x11-common_1%3a7.7+22_all.deb ... Unpacking x11-common (1:7.7+22) ... Selecting previously unselected package libxss1:arm64. Preparing to unpack .../092-libxss1_1%3a1.2.3-1_arm64.deb ... Unpacking libxss1:arm64 (1:1.2.3-1) ... Selecting previously unselected package libtk8.6:arm64. Preparing to unpack .../093-libtk8.6_8.6.11-2_arm64.deb ... Unpacking libtk8.6:arm64 (8.6.11-2) ... Selecting previously unselected package libice6:arm64. Preparing to unpack .../094-libice6_2%3a1.0.10-1_arm64.deb ... Unpacking libice6:arm64 (2:1.0.10-1) ... Selecting previously unselected package libsm6:arm64. Preparing to unpack .../095-libsm6_2%3a1.2.3-1_arm64.deb ... Unpacking libsm6:arm64 (2:1.2.3-1) ... Selecting previously unselected package libxt6:arm64. Preparing to unpack .../096-libxt6_1%3a1.2.0-1_arm64.deb ... Unpacking libxt6:arm64 (1:1.2.0-1) ... Selecting previously unselected package r-base-core. Preparing to unpack .../097-r-base-core_4.0.4-1_arm64.deb ... Unpacking r-base-core (4.0.4-1) ... Selecting previously unselected package libgfortran-10-dev:arm64. Preparing to unpack .../098-libgfortran-10-dev_10.2.1-6_arm64.deb ... Unpacking libgfortran-10-dev:arm64 (10.2.1-6) ... Selecting previously unselected package gfortran-10. 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Setting up libexpat1:arm64 (2.2.10-2) ... Setting up libpcrecpp0v5:arm64 (2:8.39-13) ... Setting up libpipeline1:arm64 (1.5.3-1) ... Setting up libgraphite2-3:arm64 (1.3.14-1) ... Setting up libpixman-1-0:arm64 (0.40.0-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libxau6:arm64 (1:1.0.9-1) ... Setting up libpsl5:arm64 (0.21.0-1.2) ... Setting up libboost1.74-dev:arm64 (1.74.0-9) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libpcre16-3:arm64 (2:8.39-13) ... Setting up libicu67:arm64 (67.1-7) ... Setting up libdynaloader-functions-perl (0.003-1.1) ... Setting up libdatrie1:arm64 (0.2.13-1) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libsub-identify-perl (0.14-1+b3) ... Setting up libglib2.0-0:arm64 (2.66.8-1) ... No schema files found: doing nothing. Setting up unzip (6.0-26) ... 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Setting up libblas3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libalgorithm-c3-perl (0.11-1) ... Setting up libjpeg62-turbo:arm64 (1:2.0.6-4) ... Setting up libswitch-perl (2.17-2.1) ... Setting up libx11-data (2:1.7.2-1) ... Setting up libjpeg62-turbo-dev:arm64 (1:2.0.6-4) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:arm64 (6.2+20201114-2) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up libfribidi0:arm64 (1.0.8-2) ... Setting up libpng16-16:arm64 (1.6.37-3) ... Setting up libpcre32-3:arm64 (2:8.39-13) ... Setting up libvariable-magic-perl (0.62-1+b3) ... Setting up libio-html-perl (1.004-2) ... Setting up libtcl8.6:arm64 (8.6.11+dfsg-1) ... Setting up autopoint (0.21-4) ... Setting up libwebp6:arm64 (0.6.1-2.1) ... Setting up libb-hooks-op-check-perl (0.22-1+b3) ... 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Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libthai0:arm64 (0.1.28-3) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libfreetype6:arm64 (2.10.4+dfsg-1) ... Setting up liblapack-dev:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up gfortran-10 (10.2.1-6) ... Setting up libdata-optlist-perl (0.110-1.1) ... Setting up ucf (3.0043) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libncurses5-dev:arm64 (6.2+20201114-2) ... Setting up libcurl4:arm64 (7.74.0-1.3+b1) ... Setting up libx11-6:arm64 (2:1.7.2-1) ... Setting up libharfbuzz0b:arm64 (2.7.4-1) ... Setting up libmro-compat-perl (0.13-1) ... Setting up libsm6:arm64 (2:1.2.3-1) ... Setting up libxmuu1:arm64 (2:1.1.2-2+b3) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up libhttp-message-perl (6.28-1) ... Setting up libeval-closure-perl (0.14-1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpaper1:arm64 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up libxrender1:arm64 (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libxext6:arm64 (2:1.3.3-1.1) ... Setting up libwww-curl-perl (4.17-7+b1) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:10.2.1-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up dh-autoreconf (20) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdist-checkconflicts-perl (0.11-1.1) ... Setting up libxt6:arm64 (1:1.2.0-1) ... Setting up xauth (1:1.1-1) ... Setting up libxss1:arm64 (1:1.2.3-1) ... Setting up libfontconfig1:arm64 (2.13.1-4.2) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libxft2:arm64 (2.3.2-2) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libtk8.6:arm64 (8.6.11-2) ... Setting up libpango-1.0-0:arm64 (1.46.2-3) ... Setting up debhelper (13.3.4) ... Setting up libmodule-runtime-conflicts-perl (0.003-1.1) ... Setting up libcairo2:arm64 (1.16.0-5) ... Setting up libclass-load-perl (0.25-1) ... Setting up libpackage-deprecationmanager-perl (0.17-1.1) ... Setting up libdevel-overloadinfo-perl (0.005-1) ... Setting up libclass-load-xs-perl (0.10-1+b5) ... Setting up libpangoft2-1.0-0:arm64 (1.46.2-3) ... Setting up libb-hooks-endofscope-perl (0.24-1.1) ... Setting up libpangocairo-1.0-0:arm64 (1.46.2-3) ... Setting up libmoose-perl (2.2014-2) ... Setting up r-base-core (4.0.4-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.4.0-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up r-cran-futile.options (1.0.1-3) ... Setting up r-cran-lattice (0.20-41-1+b1) ... Setting up r-cran-formatr (1.7-2) ... Setting up r-cran-xml (3.99-0.5-1) ... Setting up r-bioc-genomeinfodbdata (1.2.4-1) ... Setting up r-bioc-biocgenerics (0.36.0-1) ... Setting up r-cran-matrixstats (0.58.0-3) ... Setting up r-base-dev (4.0.4-1) ... Setting up libwww-curl-simple-perl (0.100191-2) ... Setting up r-bioc-matrixgenerics (1.2.1-4) ... Setting up r-cran-lambda.r (1.2.4-2) ... Setting up r-cran-snow (1:0.4.3-2) ... Setting up r-cran-bitops (1.0-6-5) ... Setting up r-bioc-zlibbioc (1.36.0+dfsg-1) ... Setting up r-bioc-biobase (2.50.0-1) ... Setting up r-bioc-s4vectors (0.28.1-1) ... Setting up r-cran-futile.logger (1.4.3-4) ... Setting up r-cran-matrix (1.3-2-1) ... Setting up r-bioc-iranges (2.24.1-1) ... Setting up dh-r (20210303) ... Setting up r-cran-rcurl (1.98-1.2-1+b1) ... Setting up r-bioc-delayedarray (0.16.1+dfsg-1) ... Setting up r-bioc-biocparallel (1.24.1-1) ... Setting up r-bioc-rhtslib (1.22.0+dfsg-1) ... Setting up r-bioc-genomeinfodb (1.26.2-2) ... Setting up r-bioc-xvector (0.30.0-1) ... Setting up r-bioc-genomicranges (1.42.0+dfsg-1) ... Setting up r-bioc-biostrings (2.58.0-1) ... Setting up r-bioc-rsamtools (2.6.0-1) ... Setting up r-bioc-summarizedexperiment (1.20.0+dfsg-1) ... Setting up r-bioc-genomicalignments (1.26.0-1) ... Setting up r-bioc-rtracklayer (1.50.0-1) ... Processing triggers for libc-bin (2.31-13) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/r-bioc-bsgenome-1.58.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-bsgenome_1.58.0-1_source.changes dpkg-buildpackage: info: source package r-bioc-bsgenome dpkg-buildpackage: info: source version 1.58.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install -O--buildsystem=R I: R packages needed for DEP8: biovizbase (>= 1.14.0) I: R Package: BSgenome Version: 1.58.0 I: Building using R version 4.0.4-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Tue, 03 Nov 2020 13:55:17 +0100 mkdir -p /build/r-bioc-bsgenome-1.58.0/debian/r-bioc-bsgenome/usr/lib/R/site-library R CMD INSTALL -l /build/r-bioc-bsgenome-1.58.0/debian/r-bioc-bsgenome/usr/lib/R/site-library --clean . "--built-timestamp='Tue, 03 Nov 2020 13:55:17 +0100'" * installing *source* package 'BSgenome' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (BSgenome) W: Ignoring specified R dependency: R (>= 2.8.0) I: Using r-bioc-biocgenerics for Depends:BiocGenerics (>= 0.13.8) I: Using r-bioc-s4vectors for Depends:S4Vectors (>= 0.17.28) I: Using r-bioc-iranges for Depends:IRanges (>= 2.13.16) I: Using r-bioc-genomeinfodb for Depends:GenomeInfoDb (>= 1.25.6) I: Using r-bioc-genomicranges for Depends:GenomicRanges (>= 1.31.10) I: Using r-bioc-biostrings for Depends:Biostrings (>= 2.47.6) I: Using r-bioc-rtracklayer for Depends:rtracklayer (>= 1.39.7) I: Using r-bioc-biovizbase for Recommends:biovizbase (>= 1.14.0) I: Using r-cran-biocmanager for Suggests:BiocManager I: Using r-bioc-biobase for Suggests:Biobase W: Cannot find a debian package for Suggests:BSgenome.Celegans.UCSC.ce2 W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg38 W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.UCSC.hg38.masked W: Cannot find a debian package for Suggests:BSgenome.Mmusculus.UCSC.mm10 W: Cannot find a debian package for Suggests:BSgenome.Rnorvegicus.UCSC.rn5 W: Cannot find a debian package for Suggests:BSgenome.Scerevisiae.UCSC.sacCer1 W: Cannot find a debian package for Suggests:BSgenome.Hsapiens.NCBI.GRCh38 W: Cannot find a debian package for Suggests:TxDb.Hsapiens.UCSC.hg38.knownGene W: Cannot find a debian package for Suggests:TxDb.Mmusculus.UCSC.mm10.knownGene W: Cannot find a debian package for Suggests:SNPlocs.Hsapiens.dbSNP144.GRCh38 W: Cannot find a debian package for Suggests:XtraSNPlocs.Hsapiens.dbSNP144.GRCh38 W: Cannot find a debian package for Suggests:hgu95av2probe I: Using r-cran-runit for Suggests:RUnit I: Using r-cran-matrixstats for Imports:matrixStats I: Using r-bioc-biocgenerics for Imports:BiocGenerics I: Using r-bioc-s4vectors for Imports:S4Vectors I: Using r-bioc-iranges for Imports:IRanges I: Using r-bioc-xvector for Imports:XVector (>= 0.29.3) I: Using r-bioc-genomeinfodb for Imports:GenomeInfoDb I: Using r-bioc-genomicranges for Imports:GenomicRanges I: Using r-bioc-biostrings for Imports:Biostrings I: Using r-bioc-rsamtools for Imports:Rsamtools I: Using r-bioc-rtracklayer for Imports:rtracklayer I: BioConductor API version: r-api-bioc-3.12 I: Use r-bioc-bsgenome as Debian binary package for variables substitution debian/rules override_dh_install make[1]: Entering directory '/build/r-bioc-bsgenome-1.58.0' dh_install find debian -name "*.R" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/r-bioc-bsgenome-1.58.0' dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installexamples -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-bsgenome' in '../r-bioc-bsgenome_1.58.0-1_all.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../r-bioc-bsgenome_1.58.0-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/24157 and its subdirectories I: Current time: Fri Sep 23 23:46:48 -12 2022 I: pbuilder-time-stamp: 1664020008 Sun Aug 22 05:23:52 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink10-arm64.debian.net. Sun Aug 22 05:23:52 UTC 2021 I: Preparing to do remote build '2' on codethink10-arm64.debian.net. Sun Aug 22 05:27:09 UTC 2021 I: Deleting $TMPDIR on codethink10-arm64.debian.net. Sun Aug 22 05:27:09 UTC 2021 I: r-bioc-bsgenome_1.58.0-1_arm64.changes: Format: 1.8 Date: Tue, 03 Nov 2020 13:55:17 +0100 Source: r-bioc-bsgenome Binary: r-bioc-bsgenome Architecture: all Version: 1.58.0-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Andreas Tille Description: r-bioc-bsgenome - BioConductor infrastructure for Biostrings-based genome data pack Changes: r-bioc-bsgenome (1.58.0-1) unstable; urgency=medium . * New upstream version * debhelper-compat 13 (routine-update) * No tab in license text (routine-update) * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. Checksums-Sha1: bebdb578f10e8f526e91c7e67540025f19aa7bf3 7224244 r-bioc-bsgenome_1.58.0-1_all.deb 3c0d0cf894aa7cf948b7f90c5e40bb437dfaa7bc 10218 r-bioc-bsgenome_1.58.0-1_arm64.buildinfo Checksums-Sha256: 9a4d65e649eed525d1401a523f64b83342c8c89c22d56e6d078991820628bb94 7224244 r-bioc-bsgenome_1.58.0-1_all.deb 990b6b78470723e6aa1093508ef904480be5bae740cce14b990a5f264e417d48 10218 r-bioc-bsgenome_1.58.0-1_arm64.buildinfo Files: 6862344f281d10068481628265939b18 7224244 gnu-r optional r-bioc-bsgenome_1.58.0-1_all.deb 7a9fb354f5e37a1d1632e44c613c92e8 10218 gnu-r optional r-bioc-bsgenome_1.58.0-1_arm64.buildinfo Sun Aug 22 05:27:13 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.BpQfbMcsON/r-bioc-bsgenome_1.58.0-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.BpQfbMcsON/r-bioc-bsgenome_1.58.0-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.BpQfbMcsON/r-bioc-bsgenome_1.58.0-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.BpQfbMcsON/b1/r-bioc-bsgenome_1.58.0-1_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.BpQfbMcsON/b2/r-bioc-bsgenome_1.58.0-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.621s) 0.621s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.108s) 0.108s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Sun Aug 22 05:27:21 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Sun Aug 22 05:27:21 UTC 2021 I: r-bioc-bsgenome from bullseye built successfully and reproducibly on arm64. Sun Aug 22 05:27:23 UTC 2021 I: Submitting .buildinfo files to external archives: Sun Aug 22 05:27:23 UTC 2021 I: Submitting 12K b1/r-bioc-bsgenome_1.58.0-1_arm64.buildinfo.asc Sun Aug 22 05:27:25 UTC 2021 I: Submitting 12K b2/r-bioc-bsgenome_1.58.0-1_arm64.buildinfo.asc Sun Aug 22 05:27:25 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Aug 22 05:27:25 UTC 2021 I: Done submitting .buildinfo files. Sun Aug 22 05:27:25 UTC 2021 I: Removing signed r-bioc-bsgenome_1.58.0-1_arm64.buildinfo.asc files: removed './b1/r-bioc-bsgenome_1.58.0-1_arm64.buildinfo.asc' removed './b2/r-bioc-bsgenome_1.58.0-1_arm64.buildinfo.asc'