Wed Jul 28 22:58:12 UTC 2021 I: starting to build ngs-sdk/bullseye/arm64 on jenkins on '2021-07-28 22:57' Wed Jul 28 22:58:12 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_28/36766/console.log Wed Jul 28 22:58:12 UTC 2021 I: Downloading source for bullseye/ngs-sdk=2.10.9-1 --2021-07-28 22:58:12-- http://cdn-fastly.deb.debian.org/debian/pool/main/n/ngs-sdk/ngs-sdk_2.10.9-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2299 (2.2K) Saving to: ‘ngs-sdk_2.10.9-1.dsc’ 0K .. 100% 132M=0s 2021-07-28 22:58:12 (132 MB/s) - ‘ngs-sdk_2.10.9-1.dsc’ saved [2299/2299] Wed Jul 28 22:58:13 UTC 2021 I: ngs-sdk_2.10.9-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ngs-sdk Binary: libngs-sdk2, libngs-sdk-dev, libngs-java, python3-ngs Architecture: any Version: 2.10.9-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Olivier Sallou , Vincent Danjean Homepage: https://github.com/ncbi/ngs Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/ngs-sdk Vcs-Git: https://salsa.debian.org/med-team/ngs-sdk.git Build-Depends: debhelper-compat (= 13), d-shlibs, markdown , python3-all, python3-distutils, dh-python, javahelper, maven-repo-helper, default-jdk Package-List: libngs-java deb java optional arch=any libngs-sdk-dev deb libdevel optional arch=any libngs-sdk2 deb libs optional arch=any python3-ngs deb python optional arch=any Checksums-Sha1: f4680d28935b29cb60f35f9ce4fb2d2c2aa2c4de 1099992 ngs-sdk_2.10.9.orig.tar.gz 9543d4184660a30e7e7959764f590db327f50565 11836 ngs-sdk_2.10.9-1.debian.tar.xz Checksums-Sha256: 1372695af5ac2599c9dad0b8cdce857c95c7827ff831a6709343276a29438b1e 1099992 ngs-sdk_2.10.9.orig.tar.gz e0f4004dbda56c241fa3ae47fd98ea61612868a6baf0c050d0e62a69193ce9b7 11836 ngs-sdk_2.10.9-1.debian.tar.xz Files: 353a146863b3db8bc071fb4f0946dcbb 1099992 ngs-sdk_2.10.9.orig.tar.gz 467930900e782653a8282f1e94f6cbaf 11836 ngs-sdk_2.10.9-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmAEfloRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHNxBAAlSGr44x94HtxKKUiW2woNtTZ2Y2mv1cI JW+Uzn/Z6V7B28uoClXpc2fYINY1pyHzJI6Sx2rMQm02jA03bQ6ctSBNUp0/EBG/ /sbQQ+lpDMMpIw9r5cS2As24L/hYbDBuR+AexutQ6ussg5Ch4wTj5XUeMo9rANFY LrDIXAMVA+9GsQLKfryAxEsQj/exTpLfodweLsn3beOiikQiAoB+mWFkcEzZWEDB TgBHwVjCCY1v2Wx8JHXFdpc9/fkdvqCf6lWsWA4PN+zZ0kypWUk3CPky0v38A1L/ VxPrVa3NdSFNa19qg97R5vl0cfsgfHrdcb922U6ec68XSVhyBRN2P4tBLVr/DBK7 QFnQKK4saZ/ssebJm0mXMwNorVtqi72AT4wv5pmwXiJTNKyfPv7qxz1qnaU/1Eaz aAQEO0yP2JDkw35uuKpH0ZKvy7MBKpAZ3OR+OOfLSklkfhAip7k9AdMK0bIwhPTx oBQ9zTCoxJ8X3EI3uO7pufwBMQFmGtUszLPY0fEPqYVkIPhq+0RSzCH0L/zijtz8 kyWvrq767ahw66UK5/10RbKaCf8vFGlL/Rz/jhxlQtpqqGlLTIQRunGafsgAHOzZ N5e8KxThJiILMRorWGA3cOL6wB7JhUQercRlZrmZc0+MdxeYOoblemBxWwyg+e3k a4aoffdty1k= =PCxa -----END PGP SIGNATURE----- Wed Jul 28 22:58:13 UTC 2021 I: Checking whether the package is not for us Wed Jul 28 22:58:13 UTC 2021 I: Starting 1st build on remote node codethink15-arm64.debian.net. Wed Jul 28 22:58:13 UTC 2021 I: Preparing to do remote build '1' on codethink15-arm64.debian.net. Wed Jul 28 23:00:56 UTC 2021 I: Deleting $TMPDIR on codethink15-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Aug 30 17:21:16 -12 2022 I: pbuilder-time-stamp: 1661923276 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ngs-sdk_2.10.9-1.dsc] I: copying [./ngs-sdk_2.10.9.orig.tar.gz] I: copying [./ngs-sdk_2.10.9-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.0X5P6BPT/trustedkeys.kbx': General error gpgv: Signature made Sun Jan 17 06:13:46 2021 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ngs-sdk_2.10.9-1.dsc dpkg-source: info: extracting ngs-sdk in ngs-sdk-2.10.9 dpkg-source: info: unpacking ngs-sdk_2.10.9.orig.tar.gz dpkg-source: info: unpacking ngs-sdk_2.10.9-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_jni.patch dpkg-source: info: applying do_not_exclude_certain_architectures_explicitly.patch dpkg-source: info: applying fallback-on-generic-atomic32.patch dpkg-source: info: applying enable-ppc64el.patch dpkg-source: info: applying more_archs I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/31246/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='31246' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.PRYchZr4Cz/pbuilderrc_Pizm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.PRYchZr4Cz/b1 --logfile b1/build.log ngs-sdk_2.10.9-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink15-arm64 4.15.0-151-generic #157-Ubuntu SMP Fri Jul 9 21:03:48 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Jun 21 2021 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Feb 7 2021 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Feb 7 2021 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 2021 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 2021 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 2021 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Feb 7 2021 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Feb 7 2021 more -rwsr-xr-x 1 root root 51360 Feb 7 2021 mount -rwxr-xr-x 1 root root 14496 Feb 7 2021 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Jun 21 2021 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 30 03:47 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Feb 7 2021 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 2021 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Feb 7 2021 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 2021 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Feb 7 2021 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 2021 zcat -rwxr-xr-x 1 root root 1678 Mar 2 2021 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 2021 zdiff -rwxr-xr-x 1 root root 29 Mar 2 2021 zegrep -rwxr-xr-x 1 root root 29 Mar 2 2021 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 2021 zforce -rwxr-xr-x 1 root root 7585 Mar 2 2021 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 2021 zless -rwxr-xr-x 1 root root 1842 Mar 2 2021 zmore -rwxr-xr-x 1 root root 4553 Mar 2 2021 znew I: user script /srv/workspace/pbuilder/31246/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), d-shlibs, markdown, python3-all, python3-distutils, dh-python, javahelper, maven-repo-helper, default-jdk dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on d-shlibs; however: Package d-shlibs is not installed. pbuilder-satisfydepends-dummy depends on markdown; however: Package markdown is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-distutils; however: Package python3-distutils is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on javahelper; however: Package javahelper is not installed. pbuilder-satisfydepends-dummy depends on maven-repo-helper; however: Package maven-repo-helper is not installed. pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} d-shlibs{a} dctrl-tools{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} devscripts{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dirmngr{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} gnupg{a} gnupg-l10n{a} gnupg-utils{a} gpg{a} gpg-agent{a} gpg-wks-client{a} gpg-wks-server{a} gpgconf{a} gpgsm{a} groff-base{a} intltool-debian{a} java-common{a} javahelper{a} libarchive-zip-perl{a} libasound2{a} libasound2-data{a} libassuan0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libb-hooks-op-check-perl{a} libbrotli1{a} libbsd0{a} libclass-method-modifiers-perl{a} libcups2{a} libdbus-1-3{a} libdebhelper-perl{a} libdevel-callchecker-perl{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libdynaloader-functions-perl{a} libedit2{a} libelf1{a} libencode-locale-perl{a} libexpat1{a} libfile-dirlist-perl{a} libfile-homedir-perl{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libfile-touch-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libharfbuzz0b{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu67{a} libimport-into-perl{a} libio-html-perl{a} libio-pty-perl{a} libio-socket-ssl-perl{a} libipc-run-perl{a} libjpeg62-turbo{a} libksba8{a} liblcms2-2{a} libldap-2.4-2{a} libllvm11{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libmodule-runtime-perl{a} libmoo-perl{a} libmpdec3{a} libnet-http-perl{a} libnet-ssleay-perl{a} libnpth0{a} libnspr4{a} libnss3{a} libparams-classify-perl{a} libpcsclite1{a} libpipeline1{a} libpng16-16{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} librole-tiny-perl{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libsigsegv2{a} libstrictures-perl{a} libsub-override-perl{a} libsub-quote-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvulkan1{a} libwww-perl{a} libwww-robotrules-perl{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxml2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} markdown{a} maven-repo-helper{a} media-types{a} netbase{a} openjdk-11-jdk{a} openjdk-11-jdk-headless{a} openjdk-11-jre{a} openjdk-11-jre-headless{a} openssl{a} patchutils{a} perl-openssl-defaults{a} pinentry-curses{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} ucf{a} wdiff{a} x11-common{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf curl dbus debian-keyring dput dput-ng dupload equivs fonts-dejavu-extra libarchive-cpio-perl libatk-wrapper-java-jni libclass-xsaccessor-perl libclone-perl libdata-dump-perl libdistro-info-perl libgit-wrapper-perl libgitlab-api-v4-perl libglib2.0-data libhtml-form-perl libhtml-format-perl libhttp-daemon-perl libldap-common liblist-compare-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libnamespace-clean-perl libsasl2-modules libsoap-lite-perl libstring-shellquote-perl libsub-name-perl libxt-dev licensecheck lintian lynx mesa-vulkan-drivers pristine-tar python3-apt python3-debian python3-magic python3-requests python3-unidiff python3-xdg shared-mime-info strace unzip wget xdg-user-dirs 0 packages upgraded, 187 newly installed, 0 to remove and 0 not upgraded. Need to get 324 MB of archives. After unpacking 662 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-minimal arm64 3.9.2-1 [797 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 python3.9-minimal arm64 3.9.2-1 [1884 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 python3-minimal arm64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 libmpdec3 arm64 2.5.1-1 [84.4 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 readline-common all 8.1-1 [73.7 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 libreadline8 arm64 8.1-1 [160 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-stdlib arm64 3.9.2-1 [1658 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 python3.9 arm64 3.9.2-1 [466 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 libpython3-stdlib arm64 3.9.2-3 [21.4 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 python3 arm64 3.9.2-3 [37.9 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 netbase all 6.3 [19.9 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 openssl arm64 1.1.1k-1 [829 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 ca-certificates all 20210119 [158 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 ucf all 3.0043 [74.0 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 java-common all 0.72 [14.5 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libavahi-common-data arm64 0.8-5 [123 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 libavahi-common3 arm64 0.8-5 [57.1 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libdbus-1-3 arm64 1.12.20-2 [208 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 libavahi-client3 arm64 0.8-5 [60.6 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libcups2 arm64 2.3.3op2-3+deb11u1 [334 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 liblcms2-2 arm64 2.12~rc1-2 [140 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 libjpeg62-turbo arm64 1:2.0.6-4 [133 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 libpng16-16 arm64 1.6.37-3 [289 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 libfreetype6 arm64 2.10.4+dfsg-1 [393 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 fonts-dejavu-core all 2.37-2 [1069 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 fontconfig-config all 2.13.1-4.2 [281 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 libfontconfig1 arm64 2.13.1-4.2 [344 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 libnspr4 arm64 2:4.29-1 [105 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 libnss3 arm64 2:3.61-1 [1210 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 libasound2-data all 1.2.4-1.1 [38.2 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 libasound2 arm64 1.2.4-1.1 [326 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libglib2.0-0 arm64 2.66.8-1 [1286 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 libgraphite2-3 arm64 1.3.14-1 [75.6 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 libharfbuzz0b arm64 2.7.4-1 [1445 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 libpcsclite1 arm64 1.9.1-1 [59.5 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 openjdk-11-jre-headless arm64 11.0.11+9-1 [36.4 MB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 default-jre-headless arm64 2:1.11-72 [10.9 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 ca-certificates-java all 20190909 [15.7 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 d-shlibs all 0.98 [17.9 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 dctrl-tools arm64 2.24-3 [101 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 67 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 68 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 69 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 70 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 71 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 72 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 73 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 74 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 75 http://deb.debian.org/debian bullseye/main arm64 libglvnd0 arm64 1.3.2-1 [44.3 kB] Get: 76 http://deb.debian.org/debian bullseye/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 77 http://deb.debian.org/debian bullseye/main arm64 libmd0 arm64 1.0.3-3 [27.9 kB] Get: 78 http://deb.debian.org/debian bullseye/main arm64 libbsd0 arm64 0.11.3-1 [106 kB] Get: 79 http://deb.debian.org/debian bullseye/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 80 http://deb.debian.org/debian bullseye/main arm64 libxcb1 arm64 1.14-3 [138 kB] Get: 81 http://deb.debian.org/debian bullseye/main arm64 libx11-data all 2:1.7.1-1 [310 kB] Get: 82 http://deb.debian.org/debian bullseye/main arm64 libx11-6 arm64 2:1.7.1-1 [747 kB] Get: 83 http://deb.debian.org/debian bullseye/main arm64 libdrm-common all 2.4.104-1 [14.9 kB] Get: 84 http://deb.debian.org/debian bullseye/main arm64 libdrm2 arm64 2.4.104-1 [41.3 kB] Get: 85 http://deb.debian.org/debian bullseye/main arm64 libglapi-mesa arm64 20.3.5-1 [96.7 kB] Get: 86 http://deb.debian.org/debian bullseye/main arm64 libx11-xcb1 arm64 2:1.7.1-1 [203 kB] Get: 87 http://deb.debian.org/debian bullseye/main arm64 libxcb-dri2-0 arm64 1.14-3 [103 kB] Get: 88 http://deb.debian.org/debian bullseye/main arm64 libxcb-dri3-0 arm64 1.14-3 [102 kB] Get: 89 http://deb.debian.org/debian bullseye/main arm64 libxcb-glx0 arm64 1.14-3 [118 kB] Get: 90 http://deb.debian.org/debian bullseye/main arm64 libxcb-present0 arm64 1.14-3 [101 kB] Get: 91 http://deb.debian.org/debian bullseye/main arm64 libxcb-shm0 arm64 1.14-3 [101 kB] Get: 92 http://deb.debian.org/debian bullseye/main arm64 libxcb-sync1 arm64 1.14-3 [105 kB] Get: 93 http://deb.debian.org/debian bullseye/main arm64 libxcb-xfixes0 arm64 1.14-3 [105 kB] Get: 94 http://deb.debian.org/debian bullseye/main arm64 libxdamage1 arm64 1:1.1.5-2 [15.7 kB] Get: 95 http://deb.debian.org/debian bullseye/main arm64 libxext6 arm64 2:1.3.3-1.1 [51.6 kB] Get: 96 http://deb.debian.org/debian bullseye/main arm64 libxfixes3 arm64 1:5.0.3-2 [22.1 kB] Get: 97 http://deb.debian.org/debian bullseye/main arm64 libxshmfence1 arm64 1.3-1 [8712 B] Get: 98 http://deb.debian.org/debian bullseye/main arm64 libxxf86vm1 arm64 1:1.1.4-1+b2 [20.1 kB] Get: 99 http://deb.debian.org/debian bullseye/main arm64 libdrm-amdgpu1 arm64 2.4.104-1 [28.0 kB] Get: 100 http://deb.debian.org/debian bullseye/main arm64 libdrm-nouveau2 arm64 2.4.104-1 [26.1 kB] Get: 101 http://deb.debian.org/debian bullseye/main arm64 libdrm-radeon1 arm64 2.4.104-1 [29.3 kB] Get: 102 http://deb.debian.org/debian bullseye/main arm64 libedit2 arm64 3.1-20191231-2+b1 [92.1 kB] Get: 103 http://deb.debian.org/debian bullseye/main arm64 libz3-4 arm64 4.8.10-1 [6117 kB] Get: 104 http://deb.debian.org/debian bullseye/main arm64 libllvm11 arm64 1:11.0.1-2 [14.7 MB] Get: 105 http://deb.debian.org/debian bullseye/main arm64 libsensors-config all 1:3.6.0-7 [32.3 kB] Get: 106 http://deb.debian.org/debian bullseye/main arm64 libsensors5 arm64 1:3.6.0-7 [51.2 kB] Get: 107 http://deb.debian.org/debian bullseye/main arm64 libvulkan1 arm64 1.2.162.0-1 [95.7 kB] Get: 108 http://deb.debian.org/debian bullseye/main arm64 libgl1-mesa-dri arm64 20.3.5-1 [6552 kB] Get: 109 http://deb.debian.org/debian bullseye/main arm64 libglx-mesa0 arm64 20.3.5-1 [186 kB] Get: 110 http://deb.debian.org/debian bullseye/main arm64 libglx0 arm64 1.3.2-1 [32.0 kB] Get: 111 http://deb.debian.org/debian bullseye/main arm64 libgl1 arm64 1.3.2-1 [91.4 kB] Get: 112 http://deb.debian.org/debian bullseye/main arm64 libgif7 arm64 5.1.9-2 [45.0 kB] Get: 113 http://deb.debian.org/debian bullseye/main arm64 libxi6 arm64 2:1.7.10-1 [81.7 kB] Get: 114 http://deb.debian.org/debian bullseye/main arm64 libxrender1 arm64 1:0.9.10-1 [30.4 kB] Get: 115 http://deb.debian.org/debian bullseye/main arm64 x11-common all 1:7.7+22 [252 kB] Get: 116 http://deb.debian.org/debian bullseye/main arm64 libxtst6 arm64 2:1.2.3-1 [26.7 kB] Get: 117 http://deb.debian.org/debian bullseye/main arm64 openjdk-11-jre arm64 11.0.11+9-1 [165 kB] Get: 118 http://deb.debian.org/debian bullseye/main arm64 default-jre arm64 2:1.11-72 [1044 B] Get: 119 http://deb.debian.org/debian bullseye/main arm64 openjdk-11-jdk-headless arm64 11.0.11+9-1 [205 MB] Get: 120 http://deb.debian.org/debian bullseye/main arm64 default-jdk-headless arm64 2:1.11-72 [1100 B] Get: 121 http://deb.debian.org/debian bullseye/main arm64 openjdk-11-jdk arm64 11.0.11+9-1 [6957 kB] Get: 122 http://deb.debian.org/debian bullseye/main arm64 default-jdk arm64 2:1.11-72 [1056 B] Get: 123 http://deb.debian.org/debian bullseye/main arm64 libassuan0 arm64 2.5.3-7.1 [48.0 kB] Get: 124 http://deb.debian.org/debian bullseye/main arm64 gpgconf arm64 2.2.27-2 [540 kB] Get: 125 http://deb.debian.org/debian bullseye/main arm64 libksba8 arm64 1.5.0-3 [114 kB] Get: 126 http://deb.debian.org/debian bullseye/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1 [69.3 kB] Get: 127 http://deb.debian.org/debian bullseye/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1 [105 kB] Get: 128 http://deb.debian.org/debian bullseye/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-3 [222 kB] Get: 129 http://deb.debian.org/debian bullseye/main arm64 libnpth0 arm64 1.6-3 [18.6 kB] Get: 130 http://deb.debian.org/debian bullseye/main arm64 dirmngr arm64 2.2.27-2 [744 kB] Get: 131 http://deb.debian.org/debian bullseye/main arm64 gnupg-l10n all 2.2.27-2 [1084 kB] Get: 132 http://deb.debian.org/debian bullseye/main arm64 gnupg-utils arm64 2.2.27-2 [863 kB] Get: 133 http://deb.debian.org/debian bullseye/main arm64 gpg arm64 2.2.27-2 [883 kB] Get: 134 http://deb.debian.org/debian bullseye/main arm64 pinentry-curses arm64 1.1.0-4 [63.0 kB] Get: 135 http://deb.debian.org/debian bullseye/main arm64 gpg-agent arm64 2.2.27-2 [651 kB] Get: 136 http://deb.debian.org/debian bullseye/main arm64 gpg-wks-client arm64 2.2.27-2 [517 kB] Get: 137 http://deb.debian.org/debian bullseye/main arm64 gpg-wks-server arm64 2.2.27-2 [510 kB] Get: 138 http://deb.debian.org/debian bullseye/main arm64 gpgsm arm64 2.2.27-2 [627 kB] Get: 139 http://deb.debian.org/debian bullseye/main arm64 gnupg all 2.2.27-2 [825 kB] Get: 140 http://deb.debian.org/debian bullseye/main arm64 libfile-dirlist-perl all 0.05-2 [7444 B] Get: 141 http://deb.debian.org/debian bullseye/main arm64 libfile-which-perl all 1.23-1 [16.6 kB] Get: 142 http://deb.debian.org/debian bullseye/main arm64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get: 143 http://deb.debian.org/debian bullseye/main arm64 libfile-touch-perl all 0.11-1 [9254 B] Get: 144 http://deb.debian.org/debian bullseye/main arm64 libio-pty-perl arm64 1:1.15-2 [36.0 kB] Get: 145 http://deb.debian.org/debian bullseye/main arm64 libipc-run-perl all 20200505.0-1 [102 kB] Get: 146 http://deb.debian.org/debian bullseye/main arm64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get: 147 http://deb.debian.org/debian bullseye/main arm64 libb-hooks-op-check-perl arm64 0.22-1+b3 [11.2 kB] Get: 148 http://deb.debian.org/debian bullseye/main arm64 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] Get: 149 http://deb.debian.org/debian bullseye/main arm64 libdevel-callchecker-perl arm64 0.008-1+b2 [15.8 kB] Get: 150 http://deb.debian.org/debian bullseye/main arm64 libparams-classify-perl arm64 0.015-1+b3 [25.5 kB] Get: 151 http://deb.debian.org/debian bullseye/main arm64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get: 152 http://deb.debian.org/debian bullseye/main arm64 libimport-into-perl all 1.002005-1 [11.6 kB] Get: 153 http://deb.debian.org/debian bullseye/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get: 154 http://deb.debian.org/debian bullseye/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get: 155 http://deb.debian.org/debian bullseye/main arm64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get: 156 http://deb.debian.org/debian bullseye/main arm64 libmoo-perl all 2.004004-1 [59.9 kB] Get: 157 http://deb.debian.org/debian bullseye/main arm64 libencode-locale-perl all 1.05-1.1 [13.2 kB] Get: 158 http://deb.debian.org/debian bullseye/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 159 http://deb.debian.org/debian bullseye/main arm64 libhttp-date-perl all 6.05-1 [10.4 kB] Get: 160 http://deb.debian.org/debian bullseye/main arm64 libfile-listing-perl all 6.14-1 [12.4 kB] Get: 161 http://deb.debian.org/debian bullseye/main arm64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get: 162 http://deb.debian.org/debian bullseye/main arm64 liburi-perl all 5.08-1 [90.6 kB] Get: 163 http://deb.debian.org/debian bullseye/main arm64 libhtml-parser-perl arm64 3.75-1+b1 [103 kB] Get: 164 http://deb.debian.org/debian bullseye/main arm64 libhtml-tree-perl all 5.07-2 [213 kB] Get: 165 http://deb.debian.org/debian bullseye/main arm64 libio-html-perl all 1.004-2 [16.1 kB] Get: 166 http://deb.debian.org/debian bullseye/main arm64 liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get: 167 http://deb.debian.org/debian bullseye/main arm64 libhttp-message-perl all 6.28-1 [79.6 kB] Get: 168 http://deb.debian.org/debian bullseye/main arm64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get: 169 http://deb.debian.org/debian bullseye/main arm64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get: 170 http://deb.debian.org/debian bullseye/main arm64 perl-openssl-defaults arm64 5 [7360 B] Get: 171 http://deb.debian.org/debian bullseye/main arm64 libnet-ssleay-perl arm64 1.88-3+b1 [316 kB] Get: 172 http://deb.debian.org/debian bullseye/main arm64 libio-socket-ssl-perl all 2.069-1 [215 kB] Get: 173 http://deb.debian.org/debian bullseye/main arm64 libnet-http-perl all 6.20-1 [25.1 kB] Get: 174 http://deb.debian.org/debian bullseye/main arm64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get: 175 http://deb.debian.org/debian bullseye/main arm64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get: 176 http://deb.debian.org/debian bullseye/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 177 http://deb.debian.org/debian bullseye/main arm64 libwww-perl all 6.52-1 [192 kB] Get: 178 http://deb.debian.org/debian bullseye/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get: 179 http://deb.debian.org/debian bullseye/main arm64 wdiff arm64 1.2.2-2+b1 [121 kB] Get: 180 http://deb.debian.org/debian bullseye/main arm64 devscripts arm64 2.21.3 [1092 kB] Get: 181 http://deb.debian.org/debian bullseye/main arm64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 182 http://deb.debian.org/debian bullseye/main arm64 python3-distutils all 3.9.2-1 [143 kB] Get: 183 http://deb.debian.org/debian bullseye/main arm64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 184 http://deb.debian.org/debian bullseye/main arm64 javahelper all 0.78 [97.2 kB] Get: 185 http://deb.debian.org/debian bullseye/main arm64 markdown all 1.0.1-10.1 [17.5 kB] Get: 186 http://deb.debian.org/debian bullseye/main arm64 maven-repo-helper all 1.10 [142 kB] Get: 187 http://deb.debian.org/debian bullseye/main arm64 python3-all arm64 3.9.2-3 [1056 B] Fetched 324 MB in 26s (12.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-7_arm64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../1-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_arm64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../3-libpipeline1_1.5.3-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../4-man-db_2.9.4-2_arm64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package libpython3.9-minimal:arm64. Preparing to unpack .../5-libpython3.9-minimal_3.9.2-1_arm64.deb ... Unpacking libpython3.9-minimal:arm64 (3.9.2-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../6-libexpat1_2.2.10-2_arm64.deb ... Unpacking libexpat1:arm64 (2.2.10-2) ... Selecting previously unselected package python3.9-minimal. Preparing to unpack .../7-python3.9-minimal_3.9.2-1_arm64.deb ... Unpacking python3.9-minimal (3.9.2-1) ... Setting up libpython3.9-minimal:arm64 (3.9.2-1) ... Setting up libexpat1:arm64 (2.2.10-2) ... Setting up python3.9-minimal (3.9.2-1) ... 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Setting up libio-pty-perl (1:1.15-2) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:arm64 (2.66.8-1) ... No schema files found: doing nothing. Setting up libglvnd0:arm64 (1.3.2-1) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b2) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.30-1) ... Setting up libsensors-config (1:3.6.0-7) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up perl-openssl-defaults:arm64 (5) ... Setting up gettext-base (0.21-4) ... Setting up libencode-locale-perl (1.05-1.1) ... Setting up libnpth0:arm64 (1.6-3) ... Setting up file (1:5.39-3) ... Setting up libassuan0:arm64 (2.5.3-7.1) ... Setting up libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1) ... Setting up libasound2-data (1.2.4-1.1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libz3-4:arm64 (4.8.10-1) ... Setting up libjpeg62-turbo:arm64 (1:2.0.6-4) ... Setting up libx11-data (2:1.7.1-1) ... Setting up libnspr4:arm64 (2:4.29-1) ... Setting up gnupg-l10n (2.2.27-2) ... Setting up libavahi-common-data:arm64 (0.8-5) ... Setting up libdbus-1-3:arm64 (1.12.20-2) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up libpng16-16:arm64 (1.6.37-3) ... Setting up libio-html-perl (1.004-2) ... Setting up autopoint (0.21-4) ... Setting up libb-hooks-op-check-perl (0.22-1+b3) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up d-shlibs (0.98) ... Setting up libipc-run-perl (20200505.0-1) ... Setting up libpcsclite1:arm64 (1.9.1-1) ... Setting up libsensors5:arm64 (1:3.6.0-7) ... Setting up libglapi-mesa:arm64 (20.3.5-1) ... Setting up libsasl2-2:arm64 (2.1.27+dfsg-2.1) ... Setting up libvulkan1:arm64 (1.2.162.0-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libgif7:arm64 (5.1.9-2) ... Setting up libmd0:arm64 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libxshmfence1:arm64 (1.3-1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libasound2:arm64 (1.2.4-1.1) ... Setting up libmpdec3:arm64 (2.5.1-1) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libsub-override-perl (0.09-2) ... Setting up netbase (6.3) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libfile-dirlist-perl (0.05-2) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up openssl (1.1.1k-1) ... Setting up libbsd0:arm64 (0.11.3-1) ... Setting up libdrm-common (2.4.104-1) ... Setting up libelf1:arm64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ... Setting up liburi-perl (5.08-1) ... Setting up libfile-touch-perl (0.11-1) ... Setting up dctrl-tools (2.24-3) ... Setting up markdown (1.0.1-10.1) ... Setting up libnet-ssleay-perl (1.88-3+b1) ... Setting up pinentry-curses (1.1.0-4) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libhttp-date-perl (6.05-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up libxcb1:arm64 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up libxcb-xfixes0:arm64 (1.14-3) ... Setting up libfile-listing-perl (6.14-1) ... Setting up libtool (2.4.6-15) ... Setting up libxcb-glx0:arm64 (1.14-3) ... Setting up libedit2:arm64 (3.1-20191231-2+b1) ... Setting up libreadline8:arm64 (8.1-1) ... Setting up libavahi-common3:arm64 (0.8-5) ... Setting up libldap-2.4-2:arm64 (2.4.57+dfsg-3) ... Setting up libnet-http-perl (6.20-1) ... Setting up m4 (1.4.18-5) ... Setting up libnss3:arm64 (2:3.61-1) ... Setting up libxcb-shm0:arm64 (1.14-3) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxcb-present0:arm64 (1.14-3) ... Setting up patchutils (0.4.2-1) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up libllvm11:arm64 (1:11.0.1-2) ... Setting up libfreetype6:arm64 (2.10.4+dfsg-1) ... Setting up libxcb-sync1:arm64 (1.14-3) ... Setting up ucf (3.0043) ... Setting up autoconf (2.69-14) ... Setting up libxcb-dri2-0:arm64 (1.14-3) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libdrm2:arm64 (2.4.104-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libhtml-parser-perl (3.75-1+b1) ... Setting up gpgconf (2.2.27-2) ... Setting up libx11-6:arm64 (2:1.7.1-1) ... Setting up libharfbuzz0b:arm64 (2.7.4-1) ... Setting up libavahi-client3:arm64 (0.8-5) ... Setting up libio-socket-ssl-perl (2.069-1) ... Setting up gpg (2.2.27-2) ... Setting up libpython3.9-stdlib:arm64 (3.9.2-1) ... Setting up libpython3-stdlib:arm64 (3.9.2-3) ... Setting up gnupg-utils (2.2.27-2) ... Setting up libhttp-message-perl (6.28-1) ... Setting up libdrm-amdgpu1:arm64 (2.4.104-1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libxcb-dri3-0:arm64 (1.14-3) ... Setting up libx11-xcb1:arm64 (2:1.7.1-1) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libdrm-nouveau2:arm64 (2.4.104-1) ... Setting up libxdamage1:arm64 (1:1.1.5-2) ... Setting up gpg-agent (2.2.27-2) ... Setting up libxrender1:arm64 (1:0.9.10-1) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libdrm-radeon1:arm64 (2.4.104-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up gpgsm (2.2.27-2) ... Setting up libgl1-mesa-dri:arm64 (20.3.5-1) ... Setting up libxext6:arm64 (2:1.3.3-1.1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxxf86vm1:arm64 (1:1.1.4-1+b2) ... Setting up dh-autoreconf (20) ... Setting up dirmngr (2.2.27-2) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libxfixes3:arm64 (1:5.0.3-2) ... Setting up gpg-wks-server (2.2.27-2) ... Setting up libcups2:arm64 (2.3.3op2-3+deb11u1) ... Setting up libfontconfig1:arm64 (2.13.1-4.2) ... Setting up python3.9 (3.9.2-1) ... Setting up libglx-mesa0:arm64 (20.3.5-1) ... Setting up libxi6:arm64 (2:1.7.10-1) ... Setting up gpg-wks-client (2.2.27-2) ... Setting up libglx0:arm64 (1.3.2-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libxtst6:arm64 (2:1.2.3-1) ... Setting up libmoo-perl (2.004004-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up libgl1:arm64 (1.3.2-1) ... Setting up gnupg (2.2.27-2) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-all (3.9.2-3) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up default-jre-headless (2:1.11-72) ... Setting up libwww-perl (6.52-1) ... Setting up openjdk-11-jre-headless:arm64 (11.0.11+9-1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/java to provide /usr/bin/java (java) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode Setting up openjdk-11-jre:arm64 (11.0.11+9-1) ... Setting up maven-repo-helper (1.10) ... Setting up openjdk-11-jdk-headless:arm64 (11.0.11+9-1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jar to provide /usr/bin/jar (jar) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jarsigner to provide /usr/bin/jarsigner (jarsigner) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/javac to provide /usr/bin/javac (javac) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/javadoc to provide /usr/bin/javadoc (javadoc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/javap to provide /usr/bin/javap (javap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jcmd to provide /usr/bin/jcmd (jcmd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jdb to provide /usr/bin/jdb (jdb) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jdeprscan to provide /usr/bin/jdeprscan (jdeprscan) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jdeps to provide /usr/bin/jdeps (jdeps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jfr to provide /usr/bin/jfr (jfr) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jimage to provide /usr/bin/jimage (jimage) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jinfo to provide /usr/bin/jinfo (jinfo) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jlink to provide /usr/bin/jlink (jlink) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jmap to provide /usr/bin/jmap (jmap) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jmod to provide /usr/bin/jmod (jmod) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jps to provide /usr/bin/jps (jps) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jrunscript to provide /usr/bin/jrunscript (jrunscript) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jshell to provide /usr/bin/jshell (jshell) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jstack to provide /usr/bin/jstack (jstack) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jstat to provide /usr/bin/jstat (jstat) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jstatd to provide /usr/bin/jstatd (jstatd) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/rmic to provide /usr/bin/rmic (rmic) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/serialver to provide /usr/bin/serialver (serialver) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jaotc to provide /usr/bin/jaotc (jaotc) in auto mode update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jhsdb to provide /usr/bin/jhsdb (jhsdb) in auto mode Setting up default-jre (2:1.11-72) ... Setting up default-jdk-headless (2:1.11-72) ... Setting up devscripts (2.21.3) ... Setting up openjdk-11-jdk:arm64 (11.0.11+9-1) ... update-alternatives: using /usr/lib/jvm/java-11-openjdk-arm64/bin/jconsole to provide /usr/bin/jconsole (jconsole) in auto mode Setting up javahelper (0.78) ... Setting up ca-certificates-java (20190909) ... head: cannot open '/etc/ssl/certs/java/cacerts' for reading: No such file or directory Adding debian:emSign_Root_CA_-_G1.pem Adding debian:emSign_Root_CA_-_C1.pem Adding debian:emSign_ECC_Root_CA_-_G3.pem Adding debian:emSign_ECC_Root_CA_-_C3.pem Adding debian:ePKI_Root_Certification_Authority.pem Adding debian:e-Szigno_Root_CA_2017.pem Adding debian:certSIGN_Root_CA_G2.pem Adding debian:certSIGN_ROOT_CA.pem Adding debian:XRamp_Global_CA_Root.pem Adding debian:VeriSign_Universal_Root_Certification_Authority.pem Adding debian:USERTrust_RSA_Certification_Authority.pem Adding debian:USERTrust_ECC_Certification_Authority.pem Adding debian:UCA_Global_G2_Root.pem Adding debian:UCA_Extended_Validation_Root.pem Adding debian:Trustwave_Global_ECC_P384_Certification_Authority.pem Adding debian:Trustwave_Global_ECC_P256_Certification_Authority.pem Adding debian:Trustwave_Global_Certification_Authority.pem Adding debian:Trustis_FPS_Root_CA.pem Adding debian:TrustCor_RootCert_CA-2.pem Adding debian:TrustCor_RootCert_CA-1.pem Adding debian:TrustCor_ECA-1.pem Adding debian:TeliaSonera_Root_CA_v1.pem Adding debian:TWCA_Root_Certification_Authority.pem Adding debian:TWCA_Global_Root_CA.pem Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem Adding debian:T-TeleSec_GlobalRoot_Class_3.pem Adding debian:T-TeleSec_GlobalRoot_Class_2.pem Adding debian:SwissSign_Silver_CA_-_G2.pem Adding debian:SwissSign_Gold_CA_-_G2.pem Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem Adding debian:Starfield_Class_2_CA.pem Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem Adding debian:Sonera_Class_2_Root_CA.pem Adding debian:Security_Communication_Root_CA.pem Adding debian:Security_Communication_RootCA2.pem Adding debian:Secure_Global_CA.pem Adding debian:SecureTrust_CA.pem Adding debian:SecureSign_RootCA11.pem Adding debian:SZAFIR_ROOT_CA2.pem Adding debian:SSL.com_Root_Certification_Authority_RSA.pem Adding debian:SSL.com_Root_Certification_Authority_ECC.pem Adding debian:SSL.com_EV_Root_Certification_Authority_RSA_R2.pem Adding debian:SSL.com_EV_Root_Certification_Authority_ECC.pem Adding debian:QuoVadis_Root_CA_3_G3.pem Adding debian:QuoVadis_Root_CA_3.pem Adding debian:QuoVadis_Root_CA_2_G3.pem Adding debian:QuoVadis_Root_CA_2.pem Adding debian:QuoVadis_Root_CA_1_G3.pem Adding debian:QuoVadis_Root_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GC_CA.pem Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem Adding debian:Network_Solutions_Certificate_Authority.pem Adding debian:NetLock_Arany_=Class_Gold=_Főtanúsítvány.pem Adding debian:NAVER_Global_Root_Certification_Authority.pem Adding debian:Microsoft_RSA_Root_Certificate_Authority_2017.pem Adding debian:Microsoft_ECC_Root_Certificate_Authority_2017.pem Adding debian:Microsec_e-Szigno_Root_CA_2009.pem Adding debian:Izenpe.com.pem Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem Adding debian:IdenTrust_Commercial_Root_CA_1.pem Adding debian:ISRG_Root_X1.pem Adding debian:Hongkong_Post_Root_CA_3.pem Adding debian:Hongkong_Post_Root_CA_1.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem Adding debian:Go_Daddy_Class_2_CA.pem Adding debian:Global_Chambersign_Root_-_2008.pem Adding debian:GlobalSign_Root_CA_-_R6.pem Adding debian:GlobalSign_Root_CA_-_R3.pem Adding debian:GlobalSign_Root_CA_-_R2.pem Adding debian:GlobalSign_Root_CA.pem Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem Adding debian:GTS_Root_R4.pem Adding debian:GTS_Root_R3.pem Adding debian:GTS_Root_R2.pem Adding debian:GTS_Root_R1.pem Adding debian:GDCA_TrustAUTH_R5_ROOT.pem Adding debian:Entrust_Root_Certification_Authority_-_G4.pem Adding debian:Entrust_Root_Certification_Authority_-_G2.pem Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem Adding debian:Entrust_Root_Certification_Authority.pem Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem Adding debian:EC-ACC.pem Adding debian:E-Tugra_Certification_Authority.pem Adding debian:DigiCert_Trusted_Root_G4.pem Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem Adding debian:DigiCert_Global_Root_G3.pem Adding debian:DigiCert_Global_Root_G2.pem Adding debian:DigiCert_Global_Root_CA.pem Adding debian:DigiCert_Assured_ID_Root_G3.pem Adding debian:DigiCert_Assured_ID_Root_G2.pem Adding debian:DigiCert_Assured_ID_Root_CA.pem Adding debian:DST_Root_CA_X3.pem Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem Adding debian:Cybertrust_Global_Root.pem Adding debian:Comodo_AAA_Services_root.pem Adding debian:Chambers_of_Commerce_Root_-_2008.pem Adding debian:Certum_Trusted_Network_CA_2.pem Adding debian:Certum_Trusted_Network_CA.pem Adding debian:Certigna_Root_CA.pem Adding debian:Certigna.pem Adding debian:COMODO_RSA_Certification_Authority.pem Adding debian:COMODO_ECC_Certification_Authority.pem Adding debian:COMODO_Certification_Authority.pem Adding debian:CFCA_EV_ROOT.pem Adding debian:CA_Disig_Root_R2.pem Adding debian:Buypass_Class_3_Root_CA.pem Adding debian:Buypass_Class_2_Root_CA.pem Adding debian:Baltimore_CyberTrust_Root.pem Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem Adding debian:Atos_TrustedRoot_2011.pem Adding debian:Amazon_Root_CA_4.pem Adding debian:Amazon_Root_CA_3.pem Adding debian:Amazon_Root_CA_2.pem Adding debian:Amazon_Root_CA_1.pem Adding debian:AffirmTrust_Premium_ECC.pem Adding debian:AffirmTrust_Premium.pem Adding debian:AffirmTrust_Networking.pem Adding debian:AffirmTrust_Commercial.pem Adding debian:Actalis_Authentication_Root_CA.pem Adding debian:AC_RAIZ_FNMT-RCM.pem Adding debian:ACCVRAIZ1.pem done. Setting up default-jdk (2:1.11-72) ... Processing triggers for libc-bin (2.31-13) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/ngs-sdk-2.10.9/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ngs-sdk_2.10.9-1_source.changes dpkg-buildpackage: info: source package ngs-sdk dpkg-buildpackage: info: source version 2.10.9-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3,javahelper,jh_maven_repo_helper debian/rules override_dh_auto_clean make[1]: Entering directory '/build/ngs-sdk-2.10.9' if [ -e ngs-sdk/Makefile.config.linux.aarch64 ] ; then \ # dh_auto_clean --sourcedirectory=ngs-sdk ; \ dh_auto_clean ; \ fi rm -rf ngs-java/aarch64-linux-gnu rm -rf ngs-bam/aarch64-linux-gnu rm -f ngs-bam/Makefile.config rm -f ngs-bam/Makefile.config.install.linux.x86_64.prl rm -f ngs-bam/Makefile.config.linux.x86_64 rm -f ngs-bam/reconfigure rm -rf ngs-sdk/ngs/unix/generic rm -rf ngs-sdk/aarch64-linux-gnu rm -rf ngs-python/build make[1]: Leaving directory '/build/ngs-sdk-2.10.9' jh_clean mh_clean dh_clean debian/rules binary dh binary --with python3,javahelper,jh_maven_repo_helper dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure make[1]: Entering directory '/build/ngs-sdk-2.10.9' mkdir ngs-sdk/ngs/unix/generic && cp debian/atomic32.h ngs-sdk/ngs/unix/generic/ # # that's no standard configure script lacking support of default options \ ./configure --build=aarch64-linux-gnu --prefix=/usr -- --source=1.7 CONFIGURING ngs-sdk Configuring NGS-SDK package checking system type... Linux checking OS distributor... checking machine architecture... aarch64 configure: warning: possibly unsupported architecture aarch64 on 'Linux' checking for supported architecture... aarch64 (64 bits) is supported checking for supported OS... Linux (linux) is supported checking for supported tool chain... gcc tool chain is supported checking for g++... yes checking for Python 3... /usr/bin/python3 checking whether gcc accepts -Wno-array-bounds... yes checking whether g++ accepts -static-libstdc++... no configure: creating 'ld.linux.exe_cmd.sh' configure: creating 'Makefile.config.linux.aarch64' configure: creating 'Makefile.config' configure: creating 'reconfigure' build type: release build prefix: /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk build output path: /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel includedir: /usr/include bindir: /usr/bin libdir: /usr/lib sharedir: /usr/share CC = gcc -c CPP = g++ configured with: "'--build=aarch64-linux-gnu' '--prefix=/usr' '--' '--source=1.7'" CONFIGURING ngs-java Configuring NGS-JAVA package checking system type... Linux checking OS distributor... checking machine architecture... aarch64 configure: warning: possibly unsupported architecture aarch64 on 'Linux' checking for supported architecture... aarch64 (64 bits) is supported checking for supported OS... Linux (linux) is supported checking for supported tool chain... jdk tool chain is supported checking for javac... yes checking for Python 3... /usr/bin/python3 configure: creating 'Makefile.config.linux.aarch64' configure: creating 'Makefile.config' configure: creating 'reconfigure' build type: release build prefix: /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java build output path: /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java includedir: /usr/include bindir: /usr/bin libdir: /usr/lib sharedir: /usr/share javadir: /usr/jar configured with: "'--build=aarch64-linux-gnu' '--prefix=/usr' '--' '--source=1.7'" CONFIGURING ngs-python Configuring NGS-PYTHON package checking system type... Linux checking OS distributor... checking machine architecture... aarch64 configure: warning: possibly unsupported architecture aarch64 on 'Linux' checking for supported architecture... aarch64 (64 bits) is supported checking for supported OS... Linux (linux) is supported checking for supported tool chain... gcc tool chain is supported checking for g++... yes checking for Python 3... /usr/bin/python3 checking whether gcc accepts -Wno-array-bounds... yes checking whether g++ accepts -static-libstdc++... no checking for ngs-sdk package... configure: optional ngs-sdk package not found: skipped. checking for ncbi-vdb package... configure: optional ncbi-vdb package not found: skipped. configure: creating 'ld.linux.exe_cmd.sh' configure: creating 'Makefile.config.linux.aarch64' configure: creating 'Makefile.config' configure: creating 'reconfigure' build type: release build prefix: /build/ngs-sdk-2.10.9/ngs-python/aarch64-linux-gnu/ngs-python build output path: /build/ngs-sdk-2.10.9/ngs-python/aarch64-linux-gnu/ngs-python/linux/gcc/aarch64/rel includedir: /usr/include bindir: /usr/bin libdir: /usr/lib sharedir: /usr/share pythondir: /usr CC = gcc -c CPP = g++ configured with: "'--build=aarch64-linux-gnu' '--prefix=/usr' '--' '--source=1.7'" make[1]: Leaving directory '/build/ngs-sdk-2.10.9' jh_linkjars debian/rules override_dh_auto_build make[1]: Entering directory '/build/ngs-sdk-2.10.9' #dh_auto_build --sourcedirectory=ngs-sdk echo "DEBPKGNAME: EBPKGNAME" DEBPKGNAME: EBPKGNAME dh_auto_build --sourcedirectory=ngs-sdk cd ngs-sdk && make -j8 make[2]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk' make[3]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/dispatch' make[3]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/adapter' make[3]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/language' make[4]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/c++' make[4]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/java' make[4]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/python' mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/ilib mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReferenceItf.pic.o ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReferenceSequenceItf.pic.o ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReadCollectionItf.pic.o ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_AlignmentItf.pic.o py_AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++ mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReadCollection.pic.o ReadCollection.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadCollectionItf.pic.o jni_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReferenceSequence.pic.o ReferenceSequence.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/PileupItf.pic.o PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/PileupEventItf.pic.o PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/dispatch -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o 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-fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_PileupIteratorItf.pic.o jni_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PackageItf.pic.o py_PackageItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PileupEventItf.pic.o py_PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. 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-I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD ar rc /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-disp.a /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReadCollectionItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReferenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReferenceSequenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/PileupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/PileupEventItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/AlignmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/dispatch/ReadGroupItf.pic.o 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'/build/ngs-sdk-2.10.9/ngs-sdk/dispatch' g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Alignment.pic.o Alignment.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReadGroupItf.pic.o ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PileupEventIteratorItf.pic.o py_PileupEventIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_PileupItf.pic.o jni_PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReadGroupIterator.pic.o ReadGroupIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReadGroup.pic.o ReadGroup.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReadIterator.pic.o ReadIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Read.pic.o Read.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReadItf.pic.o ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PileupItf.pic.o py_PileupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PileupIteratorItf.pic.o py_PileupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/FragmentIterator.pic.o FragmentIterator.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Fragment.pic.o Fragment.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/FragmentItf.pic.o FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReadCollectionItf.pic.o py_ReadCollectionItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Statistics.pic.o Statistics.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/StringRef.pic.o StringRef.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/c++ -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_PileupEventIteratorItf.pic.o jni_PileupEventIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReadGroupItf.pic.o py_ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/StatisticsItf.pic.o StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/StringItf.pic.o StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/Refcount.pic.o Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ErrorMsg.pic.o ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o py_ReadGroupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_PileupEventItf.pic.o jni_PileupEventItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD ar rc /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-c++.a /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReadCollection.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReferenceSequence.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReferenceIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Reference.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/PileupIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Pileup.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/PileupEventIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/PileupEvent.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/AlignmentIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Alignment.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReadGroupIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReadGroup.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/ReadIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Read.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/FragmentIterator.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Fragment.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/Statistics.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/c++/StringRef.pic.o make[4]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/c++' g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_AlignmentIteratorItf.pic.o jni_AlignmentIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReadItf.pic.o py_ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ErrBlock.pic.o ErrBlock.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/adapter -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReadIteratorItf.pic.o py_ReadIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReferenceItf.pic.o py_ReferenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReferenceIteratorItf.pic.o py_ReferenceIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReferenceSequenceItf.pic.o py_ReferenceSequenceItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_AlignmentItf.pic.o jni_AlignmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadGroupIteratorItf.pic.o jni_ReadGroupIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_StatisticsItf.pic.o py_StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD ar rc /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-adapt-c++.a.2.10.9 /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReadCollectionItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/PileupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/PileupEventItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReferenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReferenceSequenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/AlignmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReadGroupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ReadItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/FragmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/StatisticsItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/StringItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/Refcount.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ErrorMsg.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/adapter/ErrBlock.pic.o g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_Refcount.pic.o py_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD rm -f /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-adapt-c++.a.2 ln -s libngs-adapt-c++.a.2.10.9 /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-adapt-c++.a.2 rm -f /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-adapt-c++.a ln -s libngs-adapt-c++.a.2 /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-adapt-c++.a rm -f /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-adapt-c++-static.a ln -s libngs-adapt-c++.a /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-adapt-c++-static.a make[3]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/adapter' g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_StringItf.pic.o py_StringItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/python -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadGroupItf.pic.o jni_ReadGroupItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadIteratorItf.pic.o jni_ReadIteratorItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadItf.pic.o jni_ReadItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_FragmentItf.pic.o jni_FragmentItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_StatisticsItf.pic.o jni_StatisticsItf.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_Package.pic.o jni_Package.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_String.pic.o jni_String.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_Refcount.pic.o jni_Refcount.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD ar rc /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-python.a /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_AlignmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_AlignmentIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_FragmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_FragmentIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PackageItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PileupEventItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PileupEventIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PileupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_PileupIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReadCollectionItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReadGroupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReadGroupIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReadItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReadIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReferenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReferenceIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_ReferenceSequenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_StatisticsItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_Refcount.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/python/py_StringItf.pic.o make[4]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/python' g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ErrorMsg.pic.o jni_ErrorMsg.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/language/java -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD ar rc /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-java.a /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadCollectionItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReferenceIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReferenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReferenceSequenceItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_PileupIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_PileupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_PileupEventIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_PileupEventItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_AlignmentIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_AlignmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadGroupIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadGroupItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadIteratorItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ReadItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_FragmentItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_StatisticsItf.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_Package.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_String.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_Refcount.pic.o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/language/java/jni_ErrorMsg.pic.o make[4]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/language/java' make[3]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/language' make[3]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk' rm -rf /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-c++ rm -rf /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-disp mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-c++ mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-disp rm -rf /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-java rm -rf /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-python ( cd /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-c++; ar x /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-c++.a; ar t /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-c++.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.10.9\/ngs-sdk\/aarch64-linux-gnu\/ngs-sdk\/linux\/gcc\/aarch64\/rel\/obj\/ngs-bind-c++\/\1/' > /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-c++/manifest ) ( cd /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-disp; ar x /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-disp.a; ar t /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-disp.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.10.9\/ngs-sdk\/aarch64-linux-gnu\/ngs-sdk\/linux\/gcc\/aarch64\/rel\/obj\/ngs-disp\/\1/' > /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-disp/manifest ) mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-java mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-python ( cd /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-java; ar x /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-java.a; ar t /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-java.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.10.9\/ngs-sdk\/aarch64-linux-gnu\/ngs-sdk\/linux\/gcc\/aarch64\/rel\/obj\/ngs-bind-java\/\1/' > /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-java/manifest ) ( cd /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-python; ar x /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-python.a; ar t /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/ilib/libngs-bind-python.a | sed -e '/__\.SYMDEF/d' -e 's/^\(..*\)$/\/build\/ngs-sdk-2.10.9\/ngs-sdk\/aarch64-linux-gnu\/ngs-sdk\/linux\/gcc\/aarch64\/rel\/obj\/ngs-bind-python\/\1/' > /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-python/manifest ) ( ar rc /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-c++.a.2.10.9 `cat /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-c++/manifest /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-disp/manifest` ) g++ -DNDEBUG -O3 -shared -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-sdk.so.2.10.9 -Wl,-soname=libngs-sdk.so.2 `cat /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-java/manifest /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/ngs-bind-python/manifest` -L/build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/ilib -lngs-disp rm -f /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-c++.a.2 ln -s libngs-c++.a.2.10.9 /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-c++.a.2 rm -f /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-c++.a ln -s libngs-c++.a.2 /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-c++.a rm -f /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-c++-static.a ln -s libngs-c++.a /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-c++-static.a rm -f /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-sdk.so.2 ln -s libngs-sdk.so.2.10.9 /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-sdk.so.2 rm -f /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-sdk.so ln -s libngs-sdk.so.2 /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-sdk.so make[3]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk' make[2]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk' # Remove ngs-bam generation, expects ngs-sdk and cannot find a way # to specify it #cd ngs-bam && LD_LIBRARY_PATH=../ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/*/rel/lib ./configure --build=aarch64-linux-gnu --prefix=/usr --with-ngs-sdk-prefix=../ngs-sdk #dh_auto_build --sourcedirectory=ngs-bam dh_auto_build --sourcedirectory=ngs-java -- JAVAC="javac -source 1.7 -target 1.7" cd ngs-java && make -j8 "JAVAC=javac -source 1.7 -target 1.7" make[2]: Entering directory '/build/ngs-sdk-2.10.9/ngs-java' make[3]: Entering directory '/build/ngs-sdk-2.10.9/ngs-java' mkdir -p /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/jar mkdir -p /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/cls javac -source 1.7 -target 1.7 /build/ngs-sdk-2.10.9/ngs-java//ngs/ErrorMsg.java /build/ngs-sdk-2.10.9/ngs-java//ngs/Statistics.java /build/ngs-sdk-2.10.9/ngs-java//ngs/Fragment.java /build/ngs-sdk-2.10.9/ngs-java//ngs/FragmentIterator.java /build/ngs-sdk-2.10.9/ngs-java//ngs/Read.java /build/ngs-sdk-2.10.9/ngs-java//ngs/ReadIterator.java /build/ngs-sdk-2.10.9/ngs-java//ngs/ReadGroup.java /build/ngs-sdk-2.10.9/ngs-java//ngs/ReadGroupIterator.java /build/ngs-sdk-2.10.9/ngs-java//ngs/Alignment.java /build/ngs-sdk-2.10.9/ngs-java//ngs/AlignmentIterator.java /build/ngs-sdk-2.10.9/ngs-java//ngs/PileupEvent.java /build/ngs-sdk-2.10.9/ngs-java//ngs/PileupEventIterator.java /build/ngs-sdk-2.10.9/ngs-java//ngs/Pileup.java /build/ngs-sdk-2.10.9/ngs-java//ngs/PileupIterator.java /build/ngs-sdk-2.10.9/ngs-java//ngs/Reference.java /build/ngs-sdk-2.10.9/ngs-java//ngs/ReferenceIterator.java /build/ngs-sdk-2.10.9/ngs-java//ngs/ReadCollection.java /build/ngs-sdk-2.10.9/ngs-java//ngs/Package.java -d /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/cls -classpath /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/cls -sourcepath /build/ngs-sdk-2.10.9/ngs-java/:/build/ngs-sdk-2.10.9/ngs-java//itf:/build/ngs-sdk-2.10.9/ngs-java/gov/nih/nlm/ncbi/ngs && touch /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/cls/ngs-java-api ( cd /build/ngs-sdk-2.10.9/ngs-java/; jar cf /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/jar/ngs-src.jar `find gov ngs -name "*.java"`; chmod -x,o-w,g+w /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/jar/ngs-src.jar ) || ( rm -f /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/jar/ngs-src.jar && false ) Generating javadocs... javac -source 1.7 -target 1.7 /build/ngs-sdk-2.10.9/ngs-java/examples/examples/AlignTest.java /build/ngs-sdk-2.10.9/ngs-java/examples/examples/AlignSliceTest.java /build/ngs-sdk-2.10.9/ngs-java/examples/examples/FragTest.java /build/ngs-sdk-2.10.9/ngs-java/examples/examples/PileupTest.java /build/ngs-sdk-2.10.9/ngs-java/examples/examples/RefTest.java /build/ngs-sdk-2.10.9/ngs-java/examples/examples/ReadGroupTest.java -d /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/cls -classpath /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/cls -sourcepath /build/ngs-sdk-2.10.9/ngs-java/:/build/ngs-sdk-2.10.9/ngs-java//itf:/build/ngs-sdk-2.10.9/ngs-java/gov/nih/nlm/ncbi/ngs && touch /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/cls/ngs-examples warning: [options] bootstrap class path not set in conjunction with -source 7 warning: [options] bootstrap class path not set in conjunction with -source 7 1 warning javac -source 1.7 -target 1.7 /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/Refcount.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/StatisticsItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/FragmentItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/FragmentIteratorItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/ReadItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/ReadIteratorItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/ReadGroupItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/ReadGroupIteratorItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/AlignmentItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/AlignmentIteratorItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/PileupEventItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/PileupEventIteratorItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/PileupItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/PileupIteratorItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/ReferenceItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/ReferenceIteratorItf.java /build/ngs-sdk-2.10.9/ngs-java//ngs/itf/ReadCollectionItf.java -d /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/cls -classpath /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/cls -sourcepath /build/ngs-sdk-2.10.9/ngs-java/:/build/ngs-sdk-2.10.9/ngs-java//itf:/build/ngs-sdk-2.10.9/ngs-java/gov/nih/nlm/ncbi/ngs && touch /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/cls/ngs-java-itf warning: [options] bootstrap class path not set in conjunction with -source 7 Creating destination directory: "/build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/jar/javadoc/" Note: /build/ngs-sdk-2.10.9/ngs-java/ngs/itf/Refcount.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. 1 warning ( cd /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/cls; jar cf /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/jar/ngs-examples.jar `find examples -name "*.class"`; chmod -x,o-w,g+w /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/jar/ngs-examples.jar ) || ( rm -f /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/jar/ngs-examples.jar && false ) Note: /build/ngs-sdk-2.10.9/ngs-java/ngs/itf/Refcount.java uses or overrides a deprecated API. Note: Recompile with -Xlint:deprecation for details. 1 warning javac -source 1.7 -target 1.7 /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/DownloadManager.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/FileCreator.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/HttpManager.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/LibDependencies.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/LibManager.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/LibPathIterator.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/LibVersionChecker.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/LMProperties.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/Logger.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/Manager.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/NGS.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/Version.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/LibraryLoadError.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/LibraryNotFoundError.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/LibraryIncompatibleVersionError.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/ConnectionProblemCause.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/DownloadDisabledCause.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/InvalidLibraryCause.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/JvmErrorCause.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/LibraryLoadCause.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/OutdatedJarCause.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/PrereleaseReqLibCause.java /build/ngs-sdk-2.10.9/ngs-java//gov/nih/nlm/ncbi/ngs/error/cause/UnsupportedArchCause.java -d /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/cls -classpath /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/cls -sourcepath /build/ngs-sdk-2.10.9/ngs-java/:/build/ngs-sdk-2.10.9/ngs-java//itf:/build/ngs-sdk-2.10.9/ngs-java/gov/nih/nlm/ncbi/ngs && touch /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/cls/ngs-java-ncbi ( cd /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/jar/javadoc ; jar cf /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/jar/ngs-doc.jar `find . -type f`; chmod -x,o-w,g+w /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/jar/ngs-doc.jar ) || ( rm -f /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/jar/ngs-doc.jar && false ) warning: [options] bootstrap class path not set in conjunction with -source 7 1 warning ( cd /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/cls; jar cf /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/jar/ngs-java.jar `find . -name "*.class"`; chmod -x,o-w,g+w /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/jar/ngs-java.jar ) || ( rm -f /build/ngs-sdk-2.10.9/ngs-java/aarch64-linux-gnu/ngs-java/jar/ngs-java.jar && false ) make[3]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-java' make[2]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-java' markdown README.md > README.html make[1]: Leaving directory '/build/ngs-sdk-2.10.9' debian/rules override_dh_auto_test make[1]: Entering directory '/build/ngs-sdk-2.10.9' make -C ngs-sdk/test make[2]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/test' make[3]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/test/test_engine' mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/test/test_engine g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/test/test_engine/test_engine.pic.o test_engine.cpp -fPIC -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/test/test_engine -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -DNDEBUG -O3 --shared -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib/libtest_engine.so /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/test/test_engine/test_engine.pic.o -L/build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib -L/build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/ilib -lngs-adapt-c++ -lngs-bind-c++ -lngs-disp make[3]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/test/test_engine' make[3]: Entering directory '/build/ngs-sdk-2.10.9/ngs-sdk/test/ngs-test' mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/bin mkdir -p /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/test/ngs-test g++ -c -std=c++11 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/test/ngs-test/main.o main.cpp -DNDEBUG -O3 -I. -I/build/ngs-sdk-2.10.9/ngs-sdk/test/ngs-test -I/build/ngs-sdk-2.10.9/ngs-sdk -I/build/ngs-sdk-2.10.9/ngs-sdk/ngs/unix/generic -MD g++ -DNDEBUG -O3 -o /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/bin/test-ngs /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/obj/test/ngs-test/main.o -L/build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib -L/build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/ilib -ltest_engine -lngs-bind-c++ -lngs-disp make[3]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/test/ngs-test' make[2]: Leaving directory '/build/ngs-sdk-2.10.9/ngs-sdk/test' # Tests of Java binding disabled because need external lib ncbi-vdb, # not available in Debian at this time #CLASSPATH=../aarch64-linux-gnu/ngs-java/jar/ngs-java.jar LD_LIBRARY_PATH=ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/*/rel/lib: make -C ngs-java/examples #CLASSPATH=../aarch64-linux-gnu/ngs-java/jar/ngs-java.jar LD_LIBRARY_PATH=../../ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/*/rel/lib: make -C ngs-java/examples run_all make[1]: Leaving directory '/build/ngs-sdk-2.10.9' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/ngs-sdk-2.10.9' d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-a \ --exclude-la \ --movedev "ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/*/rel/lib/*.a*" usr/lib/aarch64-linux-gnu \ --movedev "ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/*/rel/ilib/*.a" usr/lib/aarch64-linux-gnu \ --movedev ngs-sdk/ngs usr/include \ ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/*/rel/lib/libngs-sdk.so Library package automatic movement utility set -e install -d -m 755 debian/libngs-sdk-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libngs-sdk2/usr/lib/aarch64-linux-gnu mv ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-sdk.so debian/libngs-sdk-dev/usr/lib/aarch64-linux-gnu mv /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-sdk.so.2 debian/libngs-sdk2/usr/lib/aarch64-linux-gnu mv /build/ngs-sdk-2.10.9/ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/aarch64/rel/lib/libngs-sdk.so.2.10.9 debian/libngs-sdk2/usr/lib/aarch64-linux-gnu PKGDEV=libngs-sdk-dev PKGSHL=libngs-sdk2 install -d -m 755 debian/libngs-sdk-dev/usr/lib/aarch64-linux-gnu mv ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/*/rel/lib/*.a* debian/libngs-sdk-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libngs-sdk-dev/usr/lib/aarch64-linux-gnu mv ngs-sdk/aarch64-linux-gnu/ngs-sdk/linux/gcc/*/rel/ilib/*.a debian/libngs-sdk-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libngs-sdk-dev/usr/include mv ngs-sdk/ngs debian/libngs-sdk-dev/usr/include make[1]: Leaving directory '/build/ngs-sdk-2.10.9' debian/rules override_dh_install make[1]: Entering directory '/build/ngs-sdk-2.10.9' dh_install -ppython3-ngs set -e && for i in 3.9; do \ cd ngs-python ; \ python$i ./setup.py install --install-layout=deb --root ../debian/python3-ngs; \ cd .. ; \ done /usr/lib/python3.9/distutils/dist.py:274: UserWarning: Unknown distribution option: 'include_package_data' warnings.warn(msg) running install running build running build_py creating build creating build/lib creating build/lib/ngs copying ngs/__init__.py -> build/lib/ngs copying ngs/String.py -> build/lib/ngs copying ngs/Statistics.py -> build/lib/ngs copying ngs/ReferenceSequence.py -> build/lib/ngs copying ngs/ReferenceIterator.py -> build/lib/ngs copying ngs/Reference.py -> build/lib/ngs copying ngs/Refcount.py -> build/lib/ngs copying ngs/ReadIterator.py -> build/lib/ngs copying ngs/ReadGroupIterator.py -> build/lib/ngs copying ngs/ReadGroup.py -> build/lib/ngs copying ngs/ReadCollection.py -> build/lib/ngs copying ngs/Read.py -> build/lib/ngs copying ngs/PileupIterator.py -> build/lib/ngs copying ngs/PileupEventIterator.py -> build/lib/ngs copying ngs/PileupEvent.py -> build/lib/ngs copying ngs/Pileup.py -> build/lib/ngs copying ngs/Package.py -> build/lib/ngs copying ngs/LibManager.py -> build/lib/ngs copying ngs/LibChecker.py -> build/lib/ngs copying ngs/FragmentIterator.py -> build/lib/ngs copying ngs/Fragment.py -> build/lib/ngs copying ngs/ErrorMsg.py -> build/lib/ngs copying ngs/AlignmentIterator.py -> build/lib/ngs copying ngs/Alignment.py -> build/lib/ngs running install_lib creating ../debian/python3-ngs creating ../debian/python3-ngs/usr creating ../debian/python3-ngs/usr/lib creating ../debian/python3-ngs/usr/lib/python3 creating ../debian/python3-ngs/usr/lib/python3/dist-packages creating ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Alignment.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/AlignmentIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/ErrorMsg.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Fragment.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/FragmentIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/LibChecker.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/LibManager.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Package.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Pileup.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/PileupEvent.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/PileupEventIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/PileupIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Read.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/ReadCollection.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/ReadGroup.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/ReadGroupIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/ReadIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Refcount.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Reference.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/ReferenceIterator.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/ReferenceSequence.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/Statistics.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/String.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs copying build/lib/ngs/__init__.py -> ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Alignment.py to Alignment.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/AlignmentIterator.py to AlignmentIterator.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ErrorMsg.py to ErrorMsg.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Fragment.py to Fragment.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/FragmentIterator.py to FragmentIterator.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/LibChecker.py to LibChecker.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/LibManager.py to LibManager.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Package.py to Package.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Pileup.py to Pileup.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/PileupEvent.py to PileupEvent.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/PileupEventIterator.py to PileupEventIterator.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/PileupIterator.py to PileupIterator.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Read.py to Read.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadCollection.py to ReadCollection.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadGroup.py to ReadGroup.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadGroupIterator.py to ReadGroupIterator.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReadIterator.py to ReadIterator.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Refcount.py to Refcount.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Reference.py to Reference.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReferenceIterator.py to ReferenceIterator.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/ReferenceSequence.py to ReferenceSequence.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/Statistics.py to Statistics.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/String.py to String.cpython-39.pyc byte-compiling ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs/__init__.py to __init__.cpython-39.pyc running install_egg_info Writing ../debian/python3-ngs/usr/lib/python3/dist-packages/ngs-1.0.egg-info find debian -name "*.pyc" -delete find debian -type d -name __pycache__ | xargs rm -rf make[1]: Leaving directory '/build/ngs-sdk-2.10.9' jh_installjavadoc dh_installdocs dh_installchangelogs dh_python3 dh_perl dh_link jh_installlibs jh_classpath jh_manifest jh_depends mh_installpoms mh_linkjars --skip-clean-poms dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dwz: debian/libngs-sdk2/usr/lib/aarch64-linux-gnu/libngs-sdk.so.2.10.9: .debug_info section not present dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libngs-sdk2' in '../libngs-sdk2_2.10.9-1_arm64.deb'. dpkg-deb: building package 'libngs-sdk2-dbgsym' in '../libngs-sdk2-dbgsym_2.10.9-1_arm64.deb'. dpkg-deb: building package 'libngs-sdk-dev' in '../libngs-sdk-dev_2.10.9-1_arm64.deb'. dpkg-deb: building package 'libngs-java' in '../libngs-java_2.10.9-1_arm64.deb'. dpkg-deb: building package 'python3-ngs' in '../python3-ngs_2.10.9-1_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../ngs-sdk_2.10.9-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/31246 and its subdirectories I: Current time: Tue Aug 30 17:23:55 -12 2022 I: pbuilder-time-stamp: 1661923435 Wed Jul 28 23:00:57 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink16-arm64.debian.net. Wed Jul 28 23:00:57 UTC 2021 I: Preparing to do remote build '2' on codethink16-arm64.debian.net. Wed Jul 28 23:05:51 UTC 2021 I: Deleting $TMPDIR on codethink16-arm64.debian.net. Wed Jul 28 23:05:52 UTC 2021 I: ngs-sdk_2.10.9-1_arm64.changes: Format: 1.8 Date: Sun, 17 Jan 2021 18:52:56 +0100 Source: ngs-sdk Binary: libngs-java libngs-sdk-dev libngs-sdk2 libngs-sdk2-dbgsym python3-ngs Architecture: arm64 Version: 2.10.9-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libngs-java - Next Generation Sequencing language Bindings (Java bindings) libngs-sdk-dev - Next Generation Sequencing language Bindings (development) libngs-sdk2 - Next Generation Sequencing language Bindings python3-ngs - Next Generation Sequencing language Bindings (Python3 bindings) Changes: ngs-sdk (2.10.9-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.5.1 (routine-update) * debhelper-compat 13 (routine-update) * watch file standard 4 (routine-update) Checksums-Sha1: 69fb3b86201c24c78cd5961e717a392dd5578adc 80356 libngs-java_2.10.9-1_arm64.deb 0146cb7fc417c75fb7a41c625ae3c909ce3faf3b 91948 libngs-sdk-dev_2.10.9-1_arm64.deb 73404371aeb34c7561458b88ad68c1d638ab7a6e 8984 libngs-sdk2-dbgsym_2.10.9-1_arm64.deb 057a104ea8525c772f3c2babd746bd98d97e9107 45544 libngs-sdk2_2.10.9-1_arm64.deb 5f9fcd2bf200aa6f60e05ff7971e3f77ff1c6f02 10810 ngs-sdk_2.10.9-1_arm64.buildinfo 131ab2854722522d5a728e5534559321c371b68c 19916 python3-ngs_2.10.9-1_arm64.deb Checksums-Sha256: d7056bd497e95a321de2980f4b66308de0f792742d980f078e2d6f143045941b 80356 libngs-java_2.10.9-1_arm64.deb 17de61fff9e556a6b78455e875a561dd11488b7b6fddbe9acac3dabe36e34708 91948 libngs-sdk-dev_2.10.9-1_arm64.deb b89957342144a8c781f0726710d506bdca679b3fcc2114653e19c45bafa47299 8984 libngs-sdk2-dbgsym_2.10.9-1_arm64.deb 3969a28e7f668e33408f55a4003ffa36d2b80bd3c98c063489169ee92aa9baa6 45544 libngs-sdk2_2.10.9-1_arm64.deb 0500cd3e22676799adc55d1d13174660f08eb50f9f17f7e76300a32cbe601f90 10810 ngs-sdk_2.10.9-1_arm64.buildinfo 262888987f464653c78e88b2107f31209e640b42bb05254148d82b320d7ec8dc 19916 python3-ngs_2.10.9-1_arm64.deb Files: 2eec3008195ed12bdc79127bc020af5e 80356 java optional libngs-java_2.10.9-1_arm64.deb a05a1591d9e548c18c63c0175f4fe796 91948 libdevel optional libngs-sdk-dev_2.10.9-1_arm64.deb bdc912beaccfcc4faebef6f780ebb507 8984 debug optional libngs-sdk2-dbgsym_2.10.9-1_arm64.deb 4c71452d2d1c202cbb0027df551ef81c 45544 libs optional libngs-sdk2_2.10.9-1_arm64.deb d0090e033b1aa40e010b912d69f39a8b 10810 science optional ngs-sdk_2.10.9-1_arm64.buildinfo e7fc8f29baba9a19fe5edf1381c003fa 19916 python optional python3-ngs_2.10.9-1_arm64.deb Wed Jul 28 23:05:53 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.PRYchZr4Cz/ngs-sdk_2.10.9-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.PRYchZr4Cz/ngs-sdk_2.10.9-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.PRYchZr4Cz/ngs-sdk_2.10.9-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.PRYchZr4Cz/b1/ngs-sdk_2.10.9-1_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.PRYchZr4Cz/b2/ngs-sdk_2.10.9-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.252s) 0.252s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.020s) 0.020s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Wed Jul 28 23:05:55 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Wed Jul 28 23:05:55 UTC 2021 I: ngs-sdk from bullseye built successfully and reproducibly on arm64. Wed Jul 28 23:05:56 UTC 2021 I: Submitting .buildinfo files to external archives: Wed Jul 28 23:05:56 UTC 2021 I: Submitting 12K b1/ngs-sdk_2.10.9-1_arm64.buildinfo.asc Wed Jul 28 23:05:57 UTC 2021 I: Submitting 12K b2/ngs-sdk_2.10.9-1_arm64.buildinfo.asc Wed Jul 28 23:05:58 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Jul 28 23:05:58 UTC 2021 I: Done submitting .buildinfo files. Wed Jul 28 23:05:58 UTC 2021 I: Removing signed ngs-sdk_2.10.9-1_arm64.buildinfo.asc files: removed './b1/ngs-sdk_2.10.9-1_arm64.buildinfo.asc' removed './b2/ngs-sdk_2.10.9-1_arm64.buildinfo.asc'