Mon Jul 12 02:08:34 UTC 2021 I: starting to build minc-tools/bullseye/arm64 on jenkins on '2021-07-12 02:08'
Mon Jul 12 02:08:34 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_24/18343/console.log
Mon Jul 12 02:08:34 UTC 2021 I: Downloading source for bullseye/minc-tools=2.3.00+dfsg-6
--2021-07-12 02:08:34-- http://cdn-fastly.deb.debian.org/debian/pool/main/m/minc-tools/minc-tools_2.3.00+dfsg-6.dsc
Connecting to 78.137.99.97:3128... connected.
Proxy request sent, awaiting response... 200 OK
Length: 2193 (2.1K)
Saving to: ‘minc-tools_2.3.00+dfsg-6.dsc’
0K .. 100% 130M=0s
2021-07-12 02:08:34 (130 MB/s) - ‘minc-tools_2.3.00+dfsg-6.dsc’ saved [2193/2193]
Mon Jul 12 02:08:34 UTC 2021 I: minc-tools_2.3.00+dfsg-6.dsc
-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256
Format: 3.0 (quilt)
Source: minc-tools
Binary: minc-tools
Architecture: any
Version: 2.3.00+dfsg-6
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steve M. Robbins <smr@debian.org>, Andreas Tille <tille@debian.org>
Homepage: https://www.bic.mni.mcgill.ca/ServicesSoftware/HomePage
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/minc-tools
Vcs-Git: https://salsa.debian.org/med-team/minc-tools.git
Build-Depends: debhelper-compat (= 13), cmake, bison, flex, libminc-dev (>= 2.3), libnifti2-dev (>= 3.0.1-4~), libnetcdf-dev, zlib1g-dev, texlive-latex-base, libhdf5-dev
Package-List:
minc-tools deb science optional arch=any
Checksums-Sha1:
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616557504867172611b4d030dc646f95d831f0db 13868 minc-tools_2.3.00+dfsg-6.debian.tar.xz
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1c9950d12daf94eabc76f974d284641f155a42b1996c84504b0f49b5d82123cf 13868 minc-tools_2.3.00+dfsg-6.debian.tar.xz
Files:
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9c331ce0e31c40c2d20406750a77f9d8 13868 minc-tools_2.3.00+dfsg-6.debian.tar.xz
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Mon Jul 12 02:08:34 UTC 2021 I: Checking whether the package is not for us
Mon Jul 12 02:08:34 UTC 2021 I: Starting 1st build on remote node codethink14-arm64.debian.net.
Mon Jul 12 02:08:34 UTC 2021 I: Preparing to do remote build '1' on codethink14-arm64.debian.net.
Mon Jul 12 02:10:31 UTC 2021 I: Deleting $TMPDIR on codethink14-arm64.debian.net.
I: pbuilder: network access will be disabled during build
I: Current time: Sun Jul 11 14:08:38 -12 2021
I: pbuilder-time-stamp: 1626055718
I: Building the build Environment
I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz]
I: copying local configuration
I: mounting /proc filesystem
I: mounting /sys filesystem
I: creating /{dev,run}/shm
I: mounting /dev/pts filesystem
I: redirecting /dev/ptmx to /dev/pts/ptmx
I: policy-rc.d already exists
I: Copying source file
I: copying [minc-tools_2.3.00+dfsg-6.dsc]
I: copying [./minc-tools_2.3.00+dfsg.orig.tar.gz]
I: copying [./minc-tools_2.3.00+dfsg-6.debian.tar.xz]
I: Extracting source
gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.NS0ep0Xd/trustedkeys.kbx': General error
gpgv: Signature made Tue Dec 8 00:22:53 2020 -12
gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1
gpgv: issuer "tille@debian.org"
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./minc-tools_2.3.00+dfsg-6.dsc
dpkg-source: info: extracting minc-tools in minc-tools-2.3.00+dfsg
dpkg-source: info: unpacking minc-tools_2.3.00+dfsg.orig.tar.gz
dpkg-source: info: unpacking minc-tools_2.3.00+dfsg-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying 01_mincedit-sensible-viewer.diff
dpkg-source: info: applying build-with-libnifti
dpkg-source: info: applying hdf5-1.10-support.patch
dpkg-source: info: applying spelling.patch
dpkg-source: info: applying fix_manpages.patch
dpkg-source: info: applying fix-gcc10-build.patch
I: Not using root during the build.
I: Installing the build-deps
I: user script /srv/workspace/pbuilder/11996/tmp/hooks/D02_print_environment starting
I: set
BUILDDIR='/build'
BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other'
BUILDUSERNAME='pbuilder1'
BUILD_ARCH='arm64'
DEBIAN_FRONTEND='noninteractive'
DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8'
DISTRIBUTION=''
HOME='/var/lib/jenkins'
HOST_ARCH='arm64'
IFS='
'
LANG='C'
LANGUAGE='en_US:en'
LC_ALL='C'
MAIL='/var/mail/root'
OPTIND='1'
PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games'
PBCURRENTCOMMANDLINEOPERATION='build'
PBUILDER_OPERATION='build'
PBUILDER_PKGDATADIR='/usr/share/pbuilder'
PBUILDER_PKGLIBDIR='/usr/lib/pbuilder'
PBUILDER_SYSCONFDIR='/etc'
PPID='11996'
PS1='# '
PS2='> '
PS4='+ '
PWD='/'
SHELL='/bin/bash'
SHLVL='2'
SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.9DQJtt2vYz/pbuilderrc_K7pe --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.9DQJtt2vYz/b1 --logfile b1/build.log minc-tools_2.3.00+dfsg-6.dsc'
SUDO_GID='117'
SUDO_UID='110'
SUDO_USER='jenkins'
TERM='unknown'
TZ='/usr/share/zoneinfo/Etc/GMT+12'
USER='root'
USERNAME='root'
_='/usr/bin/systemd-run'
http_proxy='http://192.168.101.16:3128'
I: uname -a
Linux codethink14-arm64 4.15.0-147-generic #151-Ubuntu SMP Fri Jun 18 19:18:37 UTC 2021 aarch64 GNU/Linux
I: ls -l /bin
total 5252
-rwxr-xr-x 1 root root 1282512 Jun 21 14:26 bash
-rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2
-rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff
-rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep
-rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep
-rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep
-rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2
-rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover
lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore
-rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore
-rwxr-xr-x 1 root root 39832 Sep 22 2020 cat
-rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp
-rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod
-rwxr-xr-x 1 root root 64528 Sep 22 2020 chown
-rwxr-xr-x 1 root root 138896 Sep 22 2020 cp
-rwxr-xr-x 1 root root 129544 Dec 10 2020 dash
-rwxr-xr-x 1 root root 101384 Sep 22 2020 date
-rwxr-xr-x 1 root root 80984 Sep 22 2020 dd
-rwxr-xr-x 1 root root 89824 Sep 22 2020 df
-rwxr-xr-x 1 root root 143088 Sep 22 2020 dir
-rwxr-xr-x 1 root root 76152 Feb 7 02:38 dmesg
lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname
lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname
-rwxr-xr-x 1 root root 35632 Sep 22 2020 echo
-rwxr-xr-x 1 root root 28 Nov 9 2020 egrep
-rwxr-xr-x 1 root root 31512 Sep 22 2020 false
-rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep
-rwxr-xr-x 1 root root 64856 Feb 7 02:38 findmnt
-rwsr-xr-x 1 root root 34824 Feb 26 04:12 fusermount
-rwxr-xr-x 1 root root 178400 Nov 9 2020 grep
-rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip
-rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe
-rwxr-xr-x 1 root root 93744 Mar 2 11:30 gzip
-rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname
-rwxr-xr-x 1 root root 68720 Sep 22 2020 ln
-rwxr-xr-x 1 root root 52720 Feb 7 2020 login
-rwxr-xr-x 1 root root 143088 Sep 22 2020 ls
-rwxr-xr-x 1 root root 161960 Feb 7 02:38 lsblk
-rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir
-rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod
-rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp
-rwxr-xr-x 1 root root 51368 Feb 7 02:38 more
-rwsr-xr-x 1 root root 51360 Feb 7 02:38 mount
-rwxr-xr-x 1 root root 14496 Feb 7 02:38 mountpoint
-rwxr-xr-x 1 root root 134808 Sep 22 2020 mv
lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname
lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5
-rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd
lrwxrwxrwx 1 root root 4 Jun 21 14:26 rbash -> bash
-rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink
-rwxr-xr-x 1 root root 68592 Sep 22 2020 rm
-rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir
-rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts
-rwxr-xr-x 1 root root 114016 Dec 22 2018 sed
lrwxrwxrwx 1 root root 4 Jul 9 21:25 sh -> dash
-rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep
-rwxr-xr-x 1 root root 72640 Sep 22 2020 stty
-rwsr-xr-x 1 root root 67776 Feb 7 02:38 su
-rwxr-xr-x 1 root root 35672 Sep 22 2020 sync
-rwxr-xr-x 1 root root 535768 Feb 16 21:55 tar
-rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile
-rwxr-xr-x 1 root root 89120 Sep 22 2020 touch
-rwxr-xr-x 1 root root 31512 Sep 22 2020 true
-rwxr-xr-x 1 root root 14264 Feb 26 04:12 ulockmgr_server
-rwsr-xr-x 1 root root 30880 Feb 7 02:38 umount
-rwxr-xr-x 1 root root 35640 Sep 22 2020 uname
-rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress
-rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir
-rwxr-xr-x 1 root root 59584 Feb 7 02:38 wdctl
lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname
-rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat
-rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp
-rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff
-rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep
-rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep
-rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce
-rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep
-rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless
-rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore
-rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew
I: user script /srv/workspace/pbuilder/11996/tmp/hooks/D02_print_environment finished
-> Attempting to satisfy build-dependencies
-> Creating pbuilder-satisfydepends-dummy package
Package: pbuilder-satisfydepends-dummy
Version: 0.invalid.0
Architecture: arm64
Maintainer: Debian Pbuilder Team <pbuilder-maint@lists.alioth.debian.org>
Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder
This package was created automatically by pbuilder to satisfy the
build-dependencies of the package being currently built.
Depends: debhelper-compat (= 13), cmake, bison, flex, libminc-dev (>= 2.3), libnifti2-dev (>= 3.0.1-4~), libnetcdf-dev, zlib1g-dev, texlive-latex-base, libhdf5-dev
dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'.
Selecting previously unselected package pbuilder-satisfydepends-dummy.
(Reading database ... 19646 files and directories currently installed.)
Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ...
Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ...
dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested:
pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however:
Package debhelper-compat is not installed.
pbuilder-satisfydepends-dummy depends on cmake; however:
Package cmake is not installed.
pbuilder-satisfydepends-dummy depends on bison; however:
Package bison is not installed.
pbuilder-satisfydepends-dummy depends on flex; however:
Package flex is not installed.
pbuilder-satisfydepends-dummy depends on libminc-dev (>= 2.3); however:
Package libminc-dev is not installed.
pbuilder-satisfydepends-dummy depends on libnifti2-dev (>= 3.0.1-4~); however:
Package libnifti2-dev is not installed.
pbuilder-satisfydepends-dummy depends on libnetcdf-dev; however:
Package libnetcdf-dev is not installed.
pbuilder-satisfydepends-dummy depends on zlib1g-dev; however:
Package zlib1g-dev is not installed.
pbuilder-satisfydepends-dummy depends on texlive-latex-base; however:
Package texlive-latex-base is not installed.
pbuilder-satisfydepends-dummy depends on libhdf5-dev; however:
Package libhdf5-dev is not installed.
Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ...
Reading package lists...
Building dependency tree...
Reading state information...
Initializing package states...
Writing extended state information...
Building tag database...
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0)
The following NEW packages will be installed:
autoconf{a} automake{a} autopoint{a} autotools-dev{a} bison{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} flex{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-lmodern{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcurl3-gnutls{a} libcurl4{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libgfortran5{a} libglib2.0-0{a} libgraphite2-3{a} libharfbuzz0b{a} libhdf5-103-1{a} libhdf5-cpp-103-1{a} libhdf5-dev{a} libhdf5-fortran-102{a} libhdf5-hl-100{a} libhdf5-hl-cpp-100{a} libhdf5-hl-fortran-100{a} libice6{a} libicu67{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjsoncpp24{a} libkpathsea6{a} libldap-2.4-2{a} libmagic-mgc{a} libmagic1{a} libmd0{a} libminc-dev{a} libminc2-5.2.0{a} libncurses6{a} libnetcdf-dev{a} libnetcdf18{a} libnghttp2-14{a} libnifti2-2{a} libnifti2-dev{a} libnifticdf-dev{a} libnifticdf2{a} libniftiio-dev{a} libniftiio2{a} libpaper-utils{a} libpaper1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libprocps8{a} libpsl5{a} libptexenc1{a} librhash0{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsigsegv2{a} libsm6{a} libssh2-1{a} libsub-override-perl{a} libsynctex2{a} libsz2{a} libteckit0{a} libtexlua53{a} libtool{a} libuchardet0{a} libuv1{a} libx11-6{a} libx11-data{a} libxau6{a} libxaw7{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxi6{a} libxml2{a} libxmu6{a} libxpm4{a} libxrender1{a} libxt6{a} libznz-dev{a} libznz3{a} libzzip-0-13{a} m4{a} man-db{a} po-debconf{a} procps{a} sensible-utils{a} t1utils{a} tex-common{a} texlive-base{a} texlive-binaries{a} texlive-latex-base{a} ucf{a} x11-common{a} xdg-utils{a} zlib1g-dev{a}
The following packages are RECOMMENDED but will NOT be installed:
ca-certificates curl dvisvgm libarchive-cpio-perl libfile-mimeinfo-perl libfl-dev libglib2.0-data libgpm2 libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libsasl2-modules libx11-protocol-perl lmodern lynx pkg-config pkgconf psmisc publicsuffix shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs
0 packages upgraded, 127 newly installed, 0 to remove and 0 not upgraded.
Need to get 78.5 MB of archives. After unpacking 266 MB will be used.
Writing extended state information...
Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-7 [141 kB]
Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB]
Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB]
Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB]
Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB]
Get: 6 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB]
Get: 7 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB]
Get: 8 http://deb.debian.org/debian bullseye/main arm64 flex arm64 2.6.4-8 [431 kB]
Get: 9 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB]
Get: 10 http://deb.debian.org/debian bullseye/main arm64 ucf all 3.0043 [74.0 kB]
Get: 11 http://deb.debian.org/debian bullseye/main arm64 tex-common all 6.16 [53.7 kB]
Get: 12 http://deb.debian.org/debian bullseye/main arm64 libncurses6 arm64 6.2+20201114-2 [93.2 kB]
Get: 13 http://deb.debian.org/debian bullseye/main arm64 libprocps8 arm64 2:3.3.17-5 [61.9 kB]
Get: 14 http://deb.debian.org/debian bullseye/main arm64 procps arm64 2:3.3.17-5 [497 kB]
Get: 15 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB]
Get: 16 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB]
Get: 17 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB]
Get: 18 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB]
Get: 19 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB]
Get: 20 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get: 21 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB]
Get: 22 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB]
Get: 23 http://deb.debian.org/debian bullseye/main arm64 bison arm64 2:3.7.5+dfsg-1 [1084 kB]
Get: 24 http://deb.debian.org/debian bullseye/main arm64 cmake-data all 3.18.4-2 [1725 kB]
Get: 25 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB]
Get: 26 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB]
Get: 27 http://deb.debian.org/debian bullseye/main arm64 libarchive13 arm64 3.4.3-2+b1 [320 kB]
Get: 28 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB]
Get: 29 http://deb.debian.org/debian bullseye/main arm64 libsasl2-modules-db arm64 2.1.27+dfsg-2.1 [69.3 kB]
Get: 30 http://deb.debian.org/debian bullseye/main arm64 libsasl2-2 arm64 2.1.27+dfsg-2.1 [105 kB]
Get: 31 http://deb.debian.org/debian bullseye/main arm64 libldap-2.4-2 arm64 2.4.57+dfsg-3 [222 kB]
Get: 32 http://deb.debian.org/debian bullseye/main arm64 libnghttp2-14 arm64 1.43.0-1 [73.8 kB]
Get: 33 http://deb.debian.org/debian bullseye/main arm64 libpsl5 arm64 0.21.0-1.2 [57.1 kB]
Get: 34 http://deb.debian.org/debian bullseye/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b2 [59.4 kB]
Get: 35 http://deb.debian.org/debian bullseye/main arm64 libssh2-1 arm64 1.9.0-2 [150 kB]
Get: 36 http://deb.debian.org/debian bullseye/main arm64 libcurl4 arm64 7.74.0-1.3+b1 [321 kB]
Get: 37 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB]
Get: 38 http://deb.debian.org/debian bullseye/main arm64 libjsoncpp24 arm64 1.9.4-4 [72.5 kB]
Get: 39 http://deb.debian.org/debian bullseye/main arm64 librhash0 arm64 1.4.1-2 [127 kB]
Get: 40 http://deb.debian.org/debian bullseye/main arm64 libuv1 arm64 1.40.0-2 [126 kB]
Get: 41 http://deb.debian.org/debian bullseye/main arm64 cmake arm64 3.18.4-2 [3673 kB]
Get: 42 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB]
Get: 43 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB]
Get: 44 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB]
Get: 45 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB]
Get: 46 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB]
Get: 47 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB]
Get: 48 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB]
Get: 49 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB]
Get: 50 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB]
Get: 51 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB]
Get: 52 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get: 53 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB]
Get: 54 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB]
Get: 55 http://deb.debian.org/debian bullseye/main arm64 fonts-dejavu-core all 2.37-2 [1069 kB]
Get: 56 http://deb.debian.org/debian bullseye/main arm64 fontconfig-config all 2.13.1-4.2 [281 kB]
Get: 57 http://deb.debian.org/debian bullseye/main arm64 fonts-lmodern all 2.004.5-6.1 [4540 kB]
Get: 58 http://deb.debian.org/debian bullseye/main arm64 hdf5-helpers arm64 1.10.6+repack-4 [40.4 kB]
Get: 59 http://deb.debian.org/debian bullseye/main arm64 libaec0 arm64 1.0.4-1 [19.8 kB]
Get: 60 http://deb.debian.org/debian bullseye/main arm64 libsz2 arm64 1.0.4-1 [6736 B]
Get: 61 http://deb.debian.org/debian bullseye/main arm64 libaec-dev arm64 1.0.4-1 [18.2 kB]
Get: 62 http://deb.debian.org/debian bullseye/main arm64 libmd0 arm64 1.0.3-3 [27.9 kB]
Get: 63 http://deb.debian.org/debian bullseye/main arm64 libbsd0 arm64 0.11.3-1 [106 kB]
Get: 64 http://deb.debian.org/debian bullseye/main arm64 libpng16-16 arm64 1.6.37-3 [289 kB]
Get: 65 http://deb.debian.org/debian bullseye/main arm64 libfreetype6 arm64 2.10.4+dfsg-1 [393 kB]
Get: 66 http://deb.debian.org/debian bullseye/main arm64 libfontconfig1 arm64 2.13.1-4.2 [344 kB]
Get: 67 http://deb.debian.org/debian bullseye/main arm64 libpixman-1-0 arm64 0.40.0-1 [444 kB]
Get: 68 http://deb.debian.org/debian bullseye/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB]
Get: 69 http://deb.debian.org/debian bullseye/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB]
Get: 70 http://deb.debian.org/debian bullseye/main arm64 libxcb1 arm64 1.14-3 [138 kB]
Get: 71 http://deb.debian.org/debian bullseye/main arm64 libx11-data all 2:1.7.1-1 [310 kB]
Get: 72 http://deb.debian.org/debian bullseye/main arm64 libx11-6 arm64 2:1.7.1-1 [747 kB]
Get: 73 http://deb.debian.org/debian bullseye/main arm64 libxcb-render0 arm64 1.14-3 [111 kB]
Get: 74 http://deb.debian.org/debian bullseye/main arm64 libxcb-shm0 arm64 1.14-3 [101 kB]
Get: 75 http://deb.debian.org/debian bullseye/main arm64 libxext6 arm64 2:1.3.3-1.1 [51.6 kB]
Get: 76 http://deb.debian.org/debian bullseye/main arm64 libxrender1 arm64 1:0.9.10-1 [30.4 kB]
Get: 77 http://deb.debian.org/debian bullseye/main arm64 libcairo2 arm64 1.16.0-5 [648 kB]
Get: 78 http://deb.debian.org/debian bullseye/main arm64 libcurl3-gnutls arm64 7.74.0-1.3+b1 [318 kB]
Get: 79 http://deb.debian.org/debian bullseye/main arm64 libcurl4-gnutls-dev arm64 7.74.0-1.3+b1 [419 kB]
Get: 80 http://deb.debian.org/debian bullseye/main arm64 libgfortran5 arm64 10.2.1-6 [333 kB]
Get: 81 http://deb.debian.org/debian bullseye/main arm64 libglib2.0-0 arm64 2.66.8-1 [1286 kB]
Get: 82 http://deb.debian.org/debian bullseye/main arm64 libgraphite2-3 arm64 1.3.14-1 [75.6 kB]
Get: 83 http://deb.debian.org/debian bullseye/main arm64 libharfbuzz0b arm64 2.7.4-1 [1445 kB]
Get: 84 http://deb.debian.org/debian bullseye/main arm64 libhdf5-103-1 arm64 1.10.6+repack-4 [1032 kB]
Get: 85 http://deb.debian.org/debian bullseye/main arm64 libhdf5-cpp-103-1 arm64 1.10.6+repack-4 [131 kB]
Get: 86 http://deb.debian.org/debian bullseye/main arm64 libhdf5-fortran-102 arm64 1.10.6+repack-4 [103 kB]
Get: 87 http://deb.debian.org/debian bullseye/main arm64 libhdf5-hl-100 arm64 1.10.6+repack-4 [78.6 kB]
Get: 88 http://deb.debian.org/debian bullseye/main arm64 libhdf5-hl-fortran-100 arm64 1.10.6+repack-4 [55.0 kB]
Get: 89 http://deb.debian.org/debian bullseye/main arm64 libhdf5-hl-cpp-100 arm64 1.10.6+repack-4 [37.6 kB]
Get: 90 http://deb.debian.org/debian bullseye/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-2 [189 kB]
Get: 91 http://deb.debian.org/debian bullseye/main arm64 libjpeg62-turbo arm64 1:2.0.6-4 [133 kB]
Get: 92 http://deb.debian.org/debian bullseye/main arm64 libjpeg62-turbo-dev arm64 1:2.0.6-4 [255 kB]
Get: 93 http://deb.debian.org/debian bullseye/main arm64 libjpeg-dev arm64 1:2.0.6-4 [67.8 kB]
Get: 94 http://deb.debian.org/debian bullseye/main arm64 libhdf5-dev arm64 1.10.6+repack-4 [2535 kB]
Get: 95 http://deb.debian.org/debian bullseye/main arm64 x11-common all 1:7.7+22 [252 kB]
Get: 96 http://deb.debian.org/debian bullseye/main arm64 libice6 arm64 2:1.0.10-1 [55.6 kB]
Get: 97 http://deb.debian.org/debian bullseye/main arm64 libkpathsea6 arm64 2020.20200327.54578-7 [169 kB]
Get: 98 http://deb.debian.org/debian bullseye/main arm64 libnetcdf18 arm64 1:4.7.4-1 [377 kB]
Get: 99 http://deb.debian.org/debian bullseye/main arm64 libminc2-5.2.0 arm64 2.4.03-3 [211 kB]
Get: 100 http://deb.debian.org/debian bullseye/main arm64 libnetcdf-dev arm64 1:4.7.4-1 [93.6 kB]
Get: 101 http://deb.debian.org/debian bullseye/main arm64 libminc-dev arm64 2.4.03-3 [73.8 kB]
Get: 102 http://deb.debian.org/debian bullseye/main arm64 libznz3 arm64 3.0.1-8 [13.7 kB]
Get: 103 http://deb.debian.org/debian bullseye/main arm64 libnifti2-2 arm64 3.0.1-8 [74.0 kB]
Get: 104 http://deb.debian.org/debian bullseye/main arm64 libnifticdf2 arm64 3.0.1-8 [49.3 kB]
Get: 105 http://deb.debian.org/debian bullseye/main arm64 libnifticdf-dev arm64 3.0.1-8 [56.1 kB]
Get: 106 http://deb.debian.org/debian bullseye/main arm64 libniftiio2 arm64 3.0.1-8 [63.5 kB]
Get: 107 http://deb.debian.org/debian bullseye/main arm64 libniftiio-dev arm64 3.0.1-8 [70.7 kB]
Get: 108 http://deb.debian.org/debian bullseye/main arm64 libznz-dev arm64 3.0.1-8 [14.2 kB]
Get: 109 http://deb.debian.org/debian bullseye/main arm64 libnifti2-dev arm64 3.0.1-8 [96.8 kB]
Get: 110 http://deb.debian.org/debian bullseye/main arm64 libpaper1 arm64 1.1.28+b1 [21.4 kB]
Get: 111 http://deb.debian.org/debian bullseye/main arm64 libpaper-utils arm64 1.1.28+b1 [18.3 kB]
Get: 112 http://deb.debian.org/debian bullseye/main arm64 libptexenc1 arm64 2020.20200327.54578-7 [63.5 kB]
Get: 113 http://deb.debian.org/debian bullseye/main arm64 libsm6 arm64 2:1.2.3-1 [34.0 kB]
Get: 114 http://deb.debian.org/debian bullseye/main arm64 libsynctex2 arm64 2020.20200327.54578-7 [80.4 kB]
Get: 115 http://deb.debian.org/debian bullseye/main arm64 libteckit0 arm64 2.5.10+ds1-3 [293 kB]
Get: 116 http://deb.debian.org/debian bullseye/main arm64 libtexlua53 arm64 2020.20200327.54578-7 [124 kB]
Get: 117 http://deb.debian.org/debian bullseye/main arm64 libxt6 arm64 1:1.2.0-1 [176 kB]
Get: 118 http://deb.debian.org/debian bullseye/main arm64 libxmu6 arm64 2:1.1.2-2+b3 [57.8 kB]
Get: 119 http://deb.debian.org/debian bullseye/main arm64 libxpm4 arm64 1:3.5.12-1 [43.9 kB]
Get: 120 http://deb.debian.org/debian bullseye/main arm64 libxaw7 arm64 2:1.0.13-1.1 [184 kB]
Get: 121 http://deb.debian.org/debian bullseye/main arm64 libxi6 arm64 2:1.7.10-1 [81.7 kB]
Get: 122 http://deb.debian.org/debian bullseye/main arm64 libzzip-0-13 arm64 0.13.62-3.3 [55.2 kB]
Get: 123 http://deb.debian.org/debian bullseye/main arm64 t1utils arm64 1.41-4 [59.8 kB]
Get: 124 http://deb.debian.org/debian bullseye/main arm64 texlive-binaries arm64 2020.20200327.54578-7 [7572 kB]
Get: 125 http://deb.debian.org/debian bullseye/main arm64 xdg-utils all 1.1.3-4.1 [75.5 kB]
Get: 126 http://deb.debian.org/debian bullseye/main arm64 texlive-base all 2020.20210202-3 [20.8 MB]
Get: 127 http://deb.debian.org/debian bullseye/main arm64 texlive-latex-base all 2020.20210202-3 [1120 kB]
Fetched 78.5 MB in 2s (39.8 MB/s)
debconf: delaying package configuration, since apt-utils is not installed
Selecting previously unselected package bsdextrautils.
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(Reading database ... 19646 files and directories currently installed.)
Preparing to unpack .../000-bsdextrautils_2.36.1-7_arm64.deb ...
Unpacking bsdextrautils (2.36.1-7) ...
Selecting previously unselected package libuchardet0:arm64.
Preparing to unpack .../001-libuchardet0_0.0.7-1_arm64.deb ...
Unpacking libuchardet0:arm64 (0.0.7-1) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../002-groff-base_1.22.4-6_arm64.deb ...
Unpacking groff-base (1.22.4-6) ...
Selecting previously unselected package libpipeline1:arm64.
Preparing to unpack .../003-libpipeline1_1.5.3-1_arm64.deb ...
Unpacking libpipeline1:arm64 (1.5.3-1) ...
Selecting previously unselected package man-db.
Preparing to unpack .../004-man-db_2.9.4-2_arm64.deb ...
Unpacking man-db (2.9.4-2) ...
Selecting previously unselected package libsigsegv2:arm64.
Preparing to unpack .../005-libsigsegv2_2.13-1_arm64.deb ...
Unpacking libsigsegv2:arm64 (2.13-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../006-m4_1.4.18-5_arm64.deb ...
Unpacking m4 (1.4.18-5) ...
Selecting previously unselected package flex.
Preparing to unpack .../007-flex_2.6.4-8_arm64.deb ...
Unpacking flex (2.6.4-8) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../008-sensible-utils_0.0.14_all.deb ...
Unpacking sensible-utils (0.0.14) ...
Selecting previously unselected package ucf.
Preparing to unpack .../009-ucf_3.0043_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0043) ...
Selecting previously unselected package tex-common.
Preparing to unpack .../010-tex-common_6.16_all.deb ...
Unpacking tex-common (6.16) ...
Selecting previously unselected package libncurses6:arm64.
Preparing to unpack .../011-libncurses6_6.2+20201114-2_arm64.deb ...
Unpacking libncurses6:arm64 (6.2+20201114-2) ...
Selecting previously unselected package libprocps8:arm64.
Preparing to unpack .../012-libprocps8_2%3a3.3.17-5_arm64.deb ...
Unpacking libprocps8:arm64 (2:3.3.17-5) ...
Selecting previously unselected package procps.
Preparing to unpack .../013-procps_2%3a3.3.17-5_arm64.deb ...
Unpacking procps (2:3.3.17-5) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../014-libmagic-mgc_1%3a5.39-3_arm64.deb ...
Unpacking libmagic-mgc (1:5.39-3) ...
Selecting previously unselected package libmagic1:arm64.
Preparing to unpack .../015-libmagic1_1%3a5.39-3_arm64.deb ...
Unpacking libmagic1:arm64 (1:5.39-3) ...
Selecting previously unselected package file.
Preparing to unpack .../016-file_1%3a5.39-3_arm64.deb ...
Unpacking file (1:5.39-3) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../017-gettext-base_0.21-4_arm64.deb ...
Unpacking gettext-base (0.21-4) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../018-autoconf_2.69-14_all.deb ...
Unpacking autoconf (2.69-14) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../019-autotools-dev_20180224.1+nmu1_all.deb ...
Unpacking autotools-dev (20180224.1+nmu1) ...
Selecting previously unselected package automake.
Preparing to unpack .../020-automake_1%3a1.16.3-2_all.deb ...
Unpacking automake (1:1.16.3-2) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../021-autopoint_0.21-4_all.deb ...
Unpacking autopoint (0.21-4) ...
Selecting previously unselected package bison.
Preparing to unpack .../022-bison_2%3a3.7.5+dfsg-1_arm64.deb ...
Unpacking bison (2:3.7.5+dfsg-1) ...
Selecting previously unselected package cmake-data.
Preparing to unpack .../023-cmake-data_3.18.4-2_all.deb ...
Unpacking cmake-data (3.18.4-2) ...
Selecting previously unselected package libicu67:arm64.
Preparing to unpack .../024-libicu67_67.1-7_arm64.deb ...
Unpacking libicu67:arm64 (67.1-7) ...
Selecting previously unselected package libxml2:arm64.
Preparing to unpack .../025-libxml2_2.9.10+dfsg-6.7_arm64.deb ...
Unpacking libxml2:arm64 (2.9.10+dfsg-6.7) ...
Selecting previously unselected package libarchive13:arm64.
Preparing to unpack .../026-libarchive13_3.4.3-2+b1_arm64.deb ...
Unpacking libarchive13:arm64 (3.4.3-2+b1) ...
Selecting previously unselected package libbrotli1:arm64.
Preparing to unpack .../027-libbrotli1_1.0.9-2+b2_arm64.deb ...
Unpacking libbrotli1:arm64 (1.0.9-2+b2) ...
Selecting previously unselected package libsasl2-modules-db:arm64.
Preparing to unpack .../028-libsasl2-modules-db_2.1.27+dfsg-2.1_arm64.deb ...
Unpacking libsasl2-modules-db:arm64 (2.1.27+dfsg-2.1) ...
Selecting previously unselected package libsasl2-2:arm64.
Preparing to unpack .../029-libsasl2-2_2.1.27+dfsg-2.1_arm64.deb ...
Unpacking libsasl2-2:arm64 (2.1.27+dfsg-2.1) ...
Selecting previously unselected package libldap-2.4-2:arm64.
Preparing to unpack .../030-libldap-2.4-2_2.4.57+dfsg-3_arm64.deb ...
Unpacking libldap-2.4-2:arm64 (2.4.57+dfsg-3) ...
Selecting previously unselected package libnghttp2-14:arm64.
Preparing to unpack .../031-libnghttp2-14_1.43.0-1_arm64.deb ...
Unpacking libnghttp2-14:arm64 (1.43.0-1) ...
Selecting previously unselected package libpsl5:arm64.
Preparing to unpack .../032-libpsl5_0.21.0-1.2_arm64.deb ...
Unpacking libpsl5:arm64 (0.21.0-1.2) ...
Selecting previously unselected package librtmp1:arm64.
Preparing to unpack .../033-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_arm64.deb ...
Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b2) ...
Selecting previously unselected package libssh2-1:arm64.
Preparing to unpack .../034-libssh2-1_1.9.0-2_arm64.deb ...
Unpacking libssh2-1:arm64 (1.9.0-2) ...
Selecting previously unselected package libcurl4:arm64.
Preparing to unpack .../035-libcurl4_7.74.0-1.3+b1_arm64.deb ...
Unpacking libcurl4:arm64 (7.74.0-1.3+b1) ...
Selecting previously unselected package libexpat1:arm64.
Preparing to unpack .../036-libexpat1_2.2.10-2_arm64.deb ...
Unpacking libexpat1:arm64 (2.2.10-2) ...
Selecting previously unselected package libjsoncpp24:arm64.
Preparing to unpack .../037-libjsoncpp24_1.9.4-4_arm64.deb ...
Unpacking libjsoncpp24:arm64 (1.9.4-4) ...
Selecting previously unselected package librhash0:arm64.
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Unpacking librhash0:arm64 (1.4.1-2) ...
Selecting previously unselected package libuv1:arm64.
Preparing to unpack .../039-libuv1_1.40.0-2_arm64.deb ...
Unpacking libuv1:arm64 (1.40.0-2) ...
Selecting previously unselected package cmake.
Preparing to unpack .../040-cmake_3.18.4-2_arm64.deb ...
Unpacking cmake (3.18.4-2) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../041-libdebhelper-perl_13.3.4_all.deb ...
Unpacking libdebhelper-perl (13.3.4) ...
Selecting previously unselected package libtool.
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Unpacking libtool (2.4.6-15) ...
Selecting previously unselected package dh-autoreconf.
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Unpacking dh-autoreconf (20) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../044-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libsub-override-perl.
Preparing to unpack .../045-libsub-override-perl_0.09-2_all.deb ...
Unpacking libsub-override-perl (0.09-2) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../046-libfile-stripnondeterminism-perl_1.11.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.11.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../047-dh-strip-nondeterminism_1.11.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.11.0-1) ...
Selecting previously unselected package libelf1:arm64.
Preparing to unpack .../048-libelf1_0.183-1_arm64.deb ...
Unpacking libelf1:arm64 (0.183-1) ...
Selecting previously unselected package dwz.
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Unpacking dwz (0.13+20210201-1) ...
Selecting previously unselected package gettext.
Preparing to unpack .../050-gettext_0.21-4_arm64.deb ...
Unpacking gettext (0.21-4) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../051-intltool-debian_0.35.0+20060710.5_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.5) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../052-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../053-debhelper_13.3.4_all.deb ...
Unpacking debhelper (13.3.4) ...
Selecting previously unselected package fonts-dejavu-core.
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Unpacking fonts-dejavu-core (2.37-2) ...
Selecting previously unselected package fontconfig-config.
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Unpacking fontconfig-config (2.13.1-4.2) ...
Selecting previously unselected package fonts-lmodern.
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Unpacking fonts-lmodern (2.004.5-6.1) ...
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update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode
update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode
Setting up libminc-dev (2.4.03-3) ...
Setting up texlive-base (2020.20210202-3) ...
tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps
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Setting up texlive-latex-base (2020.20210202-3) ...
Processing triggers for libc-bin (2.31-12) ...
Processing triggers for tex-common (6.16) ...
Running updmap-sys. This may take some time... done.
Running mktexlsr /var/lib/texmf ... done.
Building format(s) --all.
This may take some time... done.
Reading package lists...
Building dependency tree...
Reading state information...
Reading extended state information...
Initializing package states...
Writing extended state information...
Building tag database...
-> Finished parsing the build-deps
I: Building the package
I: Running cd /build/minc-tools-2.3.00+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../minc-tools_2.3.00+dfsg-6_source.changes
dpkg-buildpackage: info: source package minc-tools
dpkg-buildpackage: info: source version 2.3.00+dfsg-6
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andreas Tille <tille@debian.org>
dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
debian/rules clean
dh clean
dh_clean
debian/rules binary
dh binary
dh_update_autotools_config
dh_autoreconf
debian/rules override_dh_auto_configure
make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg'
dh_auto_configure --
cd obj-aarch64-linux-gnu && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu ..
-- The C compiler identification is GNU 10.2.1
-- The CXX compiler identification is GNU 10.2.1
-- Detecting C compiler ABI info
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-- Detecting CXX compile features
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CMake Deprecation Warning at CMakeLists.txt:24 (CMAKE_POLICY):
The OLD behavior for policy CMP0026 will be removed from a future version
of CMake.
The cmake-policies(7) manual explains that the OLD behaviors of all
policies are deprecated and that a policy should be set to OLD only under
specific short-term circumstances. Projects should be ported to the NEW
behavior and not rely on setting a policy to OLD.
-- Looking for mkstemp
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-- Found BISON: /usr/bin/bison (found version "3.7.5")
-- Found FLEX: /usr/bin/flex (found version "2.6.4")
-- Configuring done
-- Generating done
CMake Warning:
Manually-specified variables were not used by the project:
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CMAKE_INSTALL_LIBDIR
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make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg'
dh_auto_build
cd obj-aarch64-linux-gnu && make -j8 "INSTALL=install --strip-program=true" VERBOSE=1
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cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincwindow/mincwindow.c
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincdump.dir/mincdump/mincdump.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/mincdump.c
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincexpand/mincexpand.c
[ 3%] Building C object progs/CMakeFiles/minccopy.dir/minccopy/minccopy.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccopy.dir/minccopy/minccopy.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccopy/minccopy.c
[ 3%] Building C object progs/CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o
[ 4%] Building C object progs/CMakeFiles/mincstats.dir/mincstats/mincstats.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincstats/mincstats.c
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincexample/mincexample1.c
[ 5%] Building C object progs/CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/xfmconcat.c
[ 6%] Linking C executable mincwindow
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincwindow.dir/link.txt --verbose=1
[ 7%] Linking C executable mincexpand
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexpand.dir/link.txt --verbose=1
[ 8%] Linking C executable mincexample1
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexample1.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincwindow.dir/mincwindow/mincwindow.c.o -o mincwindow -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexample1.dir/mincexample/mincexample1.c.o -o mincexample1 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexpand.dir/mincexpand/mincexpand.c.o -o mincexpand -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf
[ 9%] Linking C executable xfmconcat
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/xfmconcat.dir/link.txt --verbose=1
[ 10%] Linking C executable minccopy
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccopy.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/xfmconcat.dir/xfm/xfmconcat.c.o -o xfmconcat -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccopy.dir/minccopy/minccopy.c.o -o minccopy -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf
[ 11%] Linking C executable minccmp
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccmp.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccmp.dir/minccmp/minccmp.c.o -o minccmp -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 12%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/vardata.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincdump.dir/mincdump/vardata.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/vardata.c
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 12%] Built target mincwindow
make -f progs/CMakeFiles/mincconcat.dir/build.make progs/CMakeFiles/mincconcat.dir/depend
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincconcat.dir/DependInfo.cmake --color=
[ 12%] Built target mincexpand
make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/depend
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 12%] Built target mincexample1
make -f progs/CMakeFiles/mincinfo.dir/build.make progs/CMakeFiles/mincinfo.dir/depend
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cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincinfo.dir/DependInfo.cmake --color=
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincconcat.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincconcat.dir/depend.internal".
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincconcat.dir/depend.internal".
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make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 13%] [FLEX][ncgenyy] Building scanner with flex 2.6.4
cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/ncgenyy.c /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgenyy.l
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincinfo.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincinfo.dir/depend.internal".
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincinfo.dir/depend.internal".
Scanning dependencies of target mincinfo
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
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[ 14%] Building C object progs/CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincconcat/mincconcat.c
[ 15%] Building C object progs/CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincinfo/mincinfo.c
[ 15%] [BISON][ncgentab] Building parser with bison 3.7.5
[ 15%] Built target minccopy
cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/bison -d -o /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/ncgentab.c /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y
make -f progs/CMakeFiles/mincmakescalar.dir/build.make progs/CMakeFiles/mincmakescalar.dir/depend
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Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincmakescalar.dir/depend.internal".
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cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincreshape.dir/DependInfo.cmake --color=
[ 16%] Building C object progs/CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmakescalar/mincmakescalar.c
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincreshape.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincreshape.dir/depend.internal".
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincreshape.dir/depend.internal".
Scanning dependencies of target mincreshape
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make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/depend
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[ 17%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincreshape/mincreshape.c
[ 18%] [BISON][gram] Building parser with bison 3.7.5
cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/bison --debug -d -o /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/gram.c /build/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y
/build/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y: warning: 111 shift/reduce conflicts [-Wconflicts-sr]
/build/minc-tools-2.3.00+dfsg/progs/minccalc/gram.y: note: rerun with option '-Wcounterexamples' to generate conflict counterexamples
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincgen.dir/DependInfo.cmake --color=
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincgen.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincgen.dir/depend.internal".
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincgen.dir/depend.internal".
Scanning dependencies of target mincgen
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
make -f progs/CMakeFiles/mincgen.dir/build.make progs/CMakeFiles/mincgen.dir/build
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 19%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/main.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/main.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/main.c
[ 20%] Linking C executable mincmakescalar
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmakescalar.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmakescalar.dir/mincmakescalar/mincmakescalar.c.o -o mincmakescalar -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf
[ 21%] [FLEX][lex] Building scanner with flex 2.6.4
cd /build/minc-tools-2.3.00+dfsg/progs && /usr/bin/flex -o/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/lex.c /build/minc-tools-2.3.00+dfsg/progs/minccalc/lex.l
[ 22%] Building C object progs/CMakeFiles/mincgen.dir/ncgentab.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/ncgentab.c.o -c /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/ncgentab.c
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/minccalc.dir/DependInfo.cmake --color=
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/minccalc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/minccalc.dir/depend.internal".
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/minccalc.dir/depend.internal".
Scanning dependencies of target minccalc
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
make -f progs/CMakeFiles/minccalc.dir/build.make progs/CMakeFiles/minccalc.dir/build
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 23%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/minccalc.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/minccalc.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/minccalc.c
[ 24%] Building C object progs/CMakeFiles/mincdump.dir/mincdump/dumplib.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincdump/dumplib.c
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
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[ 25%] Built target mincmakescalar
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincinfo.dir/link.txt --verbose=1
make -f progs/CMakeFiles/mincconvert.dir/build.make progs/CMakeFiles/mincconvert.dir/depend
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincconvert.dir/DependInfo.cmake --color=
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincinfo.dir/mincinfo/mincinfo.c.o -o mincinfo -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincconvert.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincconvert.dir/depend.internal".
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincconvert.dir/depend.internal".
Scanning dependencies of target mincconvert
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
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[ 26%] Building C object progs/CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincconvert/mincconvert.c
[ 26%] Linking C executable mincconcat
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincconcat.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincconcat.dir/mincconcat/mincconcat.c.o -o mincconcat -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf
In file included from /usr/include/string.h:495,
from /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y:10:
In function 'strncpy',
inlined from 'yyparse' at /build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y:345:13:
/usr/include/aarch64-linux-gnu/bits/string_fortified.h:106:10: warning: '__builtin_strncpy' specified bound depends on the length of the source argument [-Wstringop-overflow=]
106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/ncgentab.c: In function 'yyparse':
/build/minc-tools-2.3.00+dfsg/progs/mincgen/ncgentab.y:342:20: note: length computed here
342 | size_t len = strlen(termstring);
| ^~~~~~~~~~~~~~~~~~
[ 27%] Linking C executable mincdump
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincdump.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincdump.dir/mincdump/mincdump.c.o CMakeFiles/mincdump.dir/mincdump/vardata.c.o CMakeFiles/mincdump.dir/mincdump/dumplib.c.o -o mincdump -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 27%] Built target mincinfo
[ 28%] Linking C executable mincstats
make -f progs/CMakeFiles/mincsample.dir/build.make progs/CMakeFiles/mincsample.dir/depend
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincstats.dir/link.txt --verbose=1
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincsample.dir/DependInfo.cmake --color=
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincsample.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincsample.dir/depend.internal".
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincsample.dir/depend.internal".
Scanning dependencies of target mincsample
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
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make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincstats.dir/mincstats/mincstats.c.o -o mincstats -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
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cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincconvert.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincconvert.dir/mincconvert/mincconvert.c.o -o mincconvert -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf
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[ 30%] Built target mincconcat
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincsample.dir/mincsample/mincsample.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincsample/mincsample.c
make -f progs/CMakeFiles/invert_raw_image.dir/build.make progs/CMakeFiles/invert_raw_image.dir/depend
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/invert_raw_image.dir/DependInfo.cmake --color=
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/invert_raw_image.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/invert_raw_image.dir/depend.internal".
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/invert_raw_image.dir/depend.internal".
Scanning dependencies of target invert_raw_image
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
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make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 31%] Building C object progs/CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincview/invert_raw_image.c
[ 31%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/eval.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/eval.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/eval.c
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
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cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/minclookup.dir/DependInfo.cmake --color=
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make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincaverage.dir/DependInfo.cmake --color=
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincmakevector.dir/DependInfo.cmake --color=
[ 31%] Building C object progs/CMakeFiles/minclookup.dir/minclookup/minclookup.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minclookup/minclookup.c
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincmakevector.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincmakevector.dir/depend.internal".
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincmakevector.dir/depend.internal".
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make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 31%] Building C object progs/CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincreshape/copy_data.c
[ 31%] Building C object progs/CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmakevector.dir/mincmakevector/mincmakevector.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmakevector/mincmakevector.c
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincaverage.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincaverage.dir/depend.internal".
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincaverage.dir/depend.internal".
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make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
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[ 33%] Building C object progs/CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincaverage/mincaverage.c
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/invert_raw_image.dir/mincview/invert_raw_image.c.o -o invert_raw_image -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf
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cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmakevector.dir/link.txt --verbose=1
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
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[ 34%] Built target invert_raw_image
make -f progs/CMakeFiles/mincblob.dir/build.make progs/CMakeFiles/mincblob.dir/depend
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincblob.dir/DependInfo.cmake --color=
[ 35%] Building C object progs/CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincsample/mt19937ar.c
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincblob.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincblob.dir/depend.internal".
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make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
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cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/ncgenyy.c.o -c /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/ncgenyy.c
[ 36%] Building C object progs/CMakeFiles/mincblob.dir/mincblob/mincblob.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincblob/mincblob.c
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
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make -f progs/CMakeFiles/mincmath.dir/build.make progs/CMakeFiles/mincmath.dir/depend
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincmath.dir/DependInfo.cmake --color=
[ 36%] Linking C executable mincsample
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincsample.dir/link.txt --verbose=1
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Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincmath.dir/depend.internal".
Scanning dependencies of target mincmath
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make -f progs/CMakeFiles/mincmath.dir/build.make progs/CMakeFiles/mincmath.dir/build
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincsample.dir/mincsample/mincsample.c.o CMakeFiles/mincsample.dir/mincsample/mt19937ar.c.o -o mincsample -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf
[ 37%] Building C object progs/CMakeFiles/mincmath.dir/mincmath/mincmath.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmath/mincmath.c
[ 38%] Linking C executable mincreshape
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincreshape.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincreshape.dir/mincreshape/mincreshape.c.o CMakeFiles/mincreshape.dir/mincreshape/copy_data.c.o -o mincreshape -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf
[ 39%] Linking C executable minclookup
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minclookup.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minclookup.dir/minclookup/minclookup.c.o -o minclookup -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 39%] Built target mincsample
make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/depend
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincmorph.dir/DependInfo.cmake --color=
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincmorph.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincmorph.dir/depend.internal".
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincmorph.dir/depend.internal".
Scanning dependencies of target mincmorph
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
make -f progs/CMakeFiles/mincmorph.dir/build.make progs/CMakeFiles/mincmorph.dir/build
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 40%] Linking C executable mincmath
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincmath.dir/link.txt --verbose=1
[ 40%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/mincmorph.c
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmath.dir/mincmath/mincmath.c.o -o mincmath -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 40%] Built target mincreshape
make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/depend
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/DependInfo.cmake --color=
[ 40%] Linking C executable mincblob
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincblob.dir/link.txt --verbose=1
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 41%] Linking C executable mincaverage
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincaverage.dir/link.txt --verbose=1
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/depend.internal".
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/minc_modify_header.dir/depend.internal".
Scanning dependencies of target minc_modify_header
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
make -f progs/CMakeFiles/minc_modify_header.dir/build.make progs/CMakeFiles/minc_modify_header.dir/build
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincaverage.dir/mincaverage/mincaverage.c.o -o mincaverage -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf
[ 42%] Building C object progs/CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minc_modify_header.dir/minc_modify_header/minc_modify_header.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minc_modify_header/minc_modify_header.c
[ 42%] Built target minclookup
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincblob.dir/mincblob/mincblob.c.o -o mincblob -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf
make -f progs/CMakeFiles/xfminvert.dir/build.make progs/CMakeFiles/xfminvert.dir/depend
[ 43%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/ident.c.o
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/xfminvert.dir/DependInfo.cmake --color=
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/ident.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/ident.c
[ 44%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/escapes.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/escapes.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/escapes.c
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/xfminvert.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/xfminvert.dir/depend.internal".
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/xfminvert.dir/depend.internal".
Scanning dependencies of target xfminvert
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
make -f progs/CMakeFiles/xfminvert.dir/build.make progs/CMakeFiles/xfminvert.dir/build
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 45%] Building C object progs/CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o
[ 45%] Built target mincmath
make -f progs/CMakeFiles/mincexample2.dir/build.make progs/CMakeFiles/mincexample2.dir/depend
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/xfminvert.c
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincexample2.dir/DependInfo.cmake --color=
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincexample2.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincexample2.dir/depend.internal".
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincexample2.dir/depend.internal".
Scanning dependencies of target mincexample2
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
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make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 46%] Building C object progs/CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincexample/mincexample2.c
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 46%] Built target mincaverage
make -f progs/CMakeFiles/mincresample.dir/build.make progs/CMakeFiles/mincresample.dir/depend
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincresample.dir/DependInfo.cmake --color=
[ 47%] Building C object progs/CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/kernel_io.c
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincresample.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincresample.dir/depend.internal".
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/mincresample.dir/depend.internal".
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make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
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[ 49%] Building C object progs/CMakeFiles/mincresample.dir/mincresample/mincresample.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincresample.dir/mincresample/mincresample.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/node.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/node.c
[ 50%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/genlib.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/genlib.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c
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/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/xfminvert.dir/xfm/xfminvert.c.o -o xfminvert -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf
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cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincmorph/kernel_ops.c
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
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cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/optim.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/optim.c
[ 53%] Built target mincblob
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make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
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[ 54%] Building C object progs/CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minctoraw/minctoraw.c
[ 55%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/scalar.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/scalar.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/scalar.c
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cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincexample2.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincexample2.dir/mincexample/mincexample2.c.o -o mincexample2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
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cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/sym.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/sym.c
make -f progs/CMakeFiles/rawtominc.dir/build.make progs/CMakeFiles/rawtominc.dir/depend
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[ 58%] Building C object progs/CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o -c /build/minc-tools-2.3.00+dfsg/progs/rawtominc/rawtominc.c
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincmorph.dir/mincmorph/mincmorph.c.o CMakeFiles/mincmorph.dir/mincmorph/kernel_io.c.o CMakeFiles/mincmorph.dir/mincmorph/kernel_ops.c.o -o mincmorph -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf
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cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/minc_endian.c
/build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c: In function 'create_output_file.constprop':
/build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:1454:39: warning: '%d' directive writing between 1 and 10 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
1454 | (void) sprintf(string, "%s%d", dimname, idim);
| ^~
/build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:1454:36: note: directive argument in the range [0, 2147483647]
1454 | (void) sprintf(string, "%s%d", dimname, idim);
| ^~~~~~
In file included from /usr/include/stdio.h:867,
from /build/minc-tools-2.3.00+dfsg/progs/mincresample/mincresample.c:207:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 266 bytes into a destination of size 256
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 61%] Building C object progs/CMakeFiles/minccalc.dir/minccalc/vector.c.o
[ 60%] Building C object progs/CMakeFiles/mincextract.dir/mincextract/mincextract.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincextract.dir/mincextract/mincextract.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincextract/mincextract.c
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/minccalc/vector.c.o -c /build/minc-tools-2.3.00+dfsg/progs/minccalc/vector.c
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/transformtags.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/transformtags.dir/depend.internal".
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/transformtags.dir/depend.internal".
Scanning dependencies of target transformtags
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
make -f progs/CMakeFiles/transformtags.dir/build.make progs/CMakeFiles/transformtags.dir/build
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 62%] Building C object progs/CMakeFiles/transformtags.dir/xfm/transformtags.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/transformtags.dir/xfm/transformtags.c.o -c /build/minc-tools-2.3.00+dfsg/progs/xfm/transformtags.c
[ 62%] Linking C executable minctoraw
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minctoraw.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minctoraw.dir/minctoraw/minctoraw.c.o CMakeFiles/minctoraw.dir/Proglib/minc_endian.c.o -o minctoraw -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf
[ 63%] Building C object progs/CMakeFiles/minccalc.dir/lex.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/lex.c.o -c /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/lex.c
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 63%] Building C object progs/CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincresample/resample_volumes.c
[ 63%] Built target mincmorph
make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/depend
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/DependInfo.cmake --color=
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/depend.internal".
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/voxeltoworld.dir/depend.internal".
Scanning dependencies of target voxeltoworld
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
make -f progs/CMakeFiles/voxeltoworld.dir/build.make progs/CMakeFiles/voxeltoworld.dir/build
[ 64%] Linking C executable transformtags
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/transformtags.dir/link.txt --verbose=1
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 64%] Built target minctoraw
make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/depend
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/DependInfo.cmake --color=
[ 65%] Building C object progs/CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/transformtags.dir/xfm/transformtags.c.o -o transformtags -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -c /build/minc-tools-2.3.00+dfsg/progs/coordinates/voxeltoworld.c
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/depend.internal".
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/CMakeFiles/worldtovoxel.dir/depend.internal".
Scanning dependencies of target worldtovoxel
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
make -f progs/CMakeFiles/worldtovoxel.dir/build.make progs/CMakeFiles/worldtovoxel.dir/build
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 66%] Building C object progs/CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o
[ 67%] Building C object progs/CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o -c /build/minc-tools-2.3.00+dfsg/progs/coordinates/worldtovoxel.c
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/minc_endian.c
[ 68%] Linking C executable voxeltoworld
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/voxeltoworld.dir/link.txt --verbose=1
[ 69%] Linking C executable mincextract
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincextract.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincextract.dir/mincextract/mincextract.c.o CMakeFiles/mincextract.dir/Proglib/minc_endian.c.o -o mincextract -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/voxeltoworld.dir/coordinates/voxeltoworld.c.o -o voxeltoworld -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf
[ 69%] Linking C executable worldtovoxel
/build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c: In function 'gen_c':
/build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:21: warning: '%.16g' directive writing between 1 and 23 bytes into a region of size 20 [-Wformat-overflow=]
161 | (void) sprintf(cp,"%.16g",* (doublep + num));
| ^~~~~
/build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:161:20: note: assuming directive output of 22 bytes
161 | (void) sprintf(cp,"%.16g",* (doublep + num));
| ^~~~~~~
In file included from /usr/include/stdio.h:867,
from /build/minc-tools-2.3.00+dfsg/progs/mincgen/genlib.c:11:
/usr/include/aarch64-linux-gnu/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 2 and 24 bytes into a destination of size 20
36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
37 | __bos (__s), __fmt, __va_arg_pack ());
| ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/worldtovoxel.dir/link.txt --verbose=1
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 69%] Built target transformtags
make -f conversion/CMakeFiles/acr_nema.dir/build.make conversion/CMakeFiles/acr_nema.dir/depend
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/worldtovoxel.dir/coordinates/worldtovoxel.c.o -o worldtovoxel -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/acr_nema.dir/DependInfo.cmake --color=
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/acr_nema.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/acr_nema.dir/depend.internal".
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/acr_nema.dir/depend.internal".
Scanning dependencies of target acr_nema
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
make -f conversion/CMakeFiles/acr_nema.dir/build.make conversion/CMakeFiles/acr_nema.dir/build
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 69%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/acr_io.c
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 69%] Built target voxeltoworld
make -f conversion/CMakeFiles/mnc2nii.dir/build.make conversion/CMakeFiles/mnc2nii.dir/depend
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/DependInfo.cmake --color=
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/depend.internal".
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/mnc2nii.dir/depend.internal".
Scanning dependencies of target mnc2nii
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
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[ 70%] Building C object conversion/CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/nifti1/mnc2nii.c
[ 70%] Built target mincextract
[ 71%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/dicom_client_routines.c
[ 72%] Building C object progs/CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/convert_origin_to_start.c
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
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make -f conversion/CMakeFiles/ecattominc.dir/build.make conversion/CMakeFiles/ecattominc.dir/depend
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/ecattominc.dir/DependInfo.cmake --color=
[ 73%] Building C object progs/CMakeFiles/minccalc.dir/gram.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minccalc.dir/gram.c.o -c /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs/gram.c
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/ecattominc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/ecattominc.dir/depend.internal".
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/ecattominc.dir/depend.internal".
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make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 74%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/ecattominc.c
[ 74%] Linking C executable rawtominc
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/rawtominc.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/rawtominc.dir/rawtominc/rawtominc.c.o CMakeFiles/rawtominc.dir/Proglib/convert_origin_to_start.c.o -o rawtominc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf
[ 75%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/getfill.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/getfill.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/getfill.c
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 75%] Linking C executable mnc2nii
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/mnc2nii.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mnc2nii.dir/nifti1/mnc2nii.c.o -o mnc2nii -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lniftiio -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lniftiio
[ 75%] Built target rawtominc
make -f conversion/CMakeFiles/minctoecat.dir/build.make conversion/CMakeFiles/minctoecat.dir/depend
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/minctoecat.dir/DependInfo.cmake --color=
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/minctoecat.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/minctoecat.dir/depend.internal".
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/minctoecat.dir/depend.internal".
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make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
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make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 76%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/minctoecat.c
[ 76%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/init.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/init.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/init.c
[ 77%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/dicom_network.c
[ 78%] Building C object progs/CMakeFiles/mincgen.dir/mincgen/load.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincgen.dir/mincgen/load.c.o -c /build/minc-tools-2.3.00+dfsg/progs/mincgen/load.c
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 78%] Built target mnc2nii
make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/depend
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/DependInfo.cmake --color=
[ 79%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/element.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/element.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/element.c
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/depend.internal".
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/nii2mnc.dir/depend.internal".
Scanning dependencies of target nii2mnc
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
make -f conversion/CMakeFiles/nii2mnc.dir/build.make conversion/CMakeFiles/nii2mnc.dir/build
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 80%] Building C object conversion/CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c
[ 81%] Building C object progs/CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/progs/Proglib -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs -I/build/minc-tools-2.3.00+dfsg/progs/minccalc -I/build/minc-tools-2.3.00+dfsg/progs/mincgen -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -c /build/minc-tools-2.3.00+dfsg/progs/Proglib/convert_origin_to_start.c
/build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c: In function 'main':
/build/minc-tools-2.3.00+dfsg/conversion/nifti1/nii2mnc.c:204:13: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
204 | fread(&ana_hdr, sizeof (ana_hdr), 1, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 81%] Linking C executable minccalc
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/minccalc.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minccalc.dir/minccalc/minccalc.c.o CMakeFiles/minccalc.dir/minccalc/eval.c.o CMakeFiles/minccalc.dir/minccalc/ident.c.o CMakeFiles/minccalc.dir/minccalc/node.c.o CMakeFiles/minccalc.dir/minccalc/optim.c.o CMakeFiles/minccalc.dir/minccalc/scalar.c.o CMakeFiles/minccalc.dir/minccalc/sym.c.o CMakeFiles/minccalc.dir/minccalc/vector.c.o CMakeFiles/minccalc.dir/lex.c.o CMakeFiles/minccalc.dir/gram.c.o -o minccalc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -ldl -lm -lm -ldl -lrt -lnetcdf -lm -ldl -lrt -lnetcdf
[ 82%] Linking C executable mincresample
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincresample.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/mincresample.dir/mincresample/mincresample.c.o CMakeFiles/mincresample.dir/mincresample/resample_volumes.c.o CMakeFiles/mincresample.dir/Proglib/convert_origin_to_start.c.o -o mincresample -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf
[ 83%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/insertblood.c
[ 84%] Linking C executable mincgen
[ 85%] Linking C executable nii2mnc
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/nii2mnc.dir/link.txt --verbose=1
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/progs && /usr/bin/cmake -E cmake_link_script CMakeFiles/mincgen.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/nii2mnc.dir/nifti1/nii2mnc.c.o -o nii2mnc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lniftiio -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lniftiio
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
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[ 86%] Building C object conversion/CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/ecat_write.c
[ 86%] Built target mincresample
[ 87%] Building C object conversion/CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c
[ 88%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o
[ 88%] Building C object conversion/CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/ecat_file.c
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/ecattominc/machine_indep.c
/build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:419:36: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
419 | {NULL, ARGV_VERINFO, (char *) VERSIONSTR, (char *) NULL, NULL},
| ^~~~~~~~~~
/build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:16:38: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
16 | #define VERSIONSTR VERSION " built " __DATE__ " " __TIME__
| ^~~~~~~~
/build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:419:36: note: in expansion of macro 'VERSIONSTR'
419 | {NULL, ARGV_VERINFO, (char *) VERSIONSTR, (char *) NULL, NULL},
| ^~~~~~~~~~
/build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c: In function 'upet_to_minc':
/build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:537:19: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
537 | argv_tmp[1] = VERSIONSTR;
| ^~~~~~~~~~
/build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:16:38: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
16 | #define VERSIONSTR VERSION " built " __DATE__ " " __TIME__
| ^~~~~~~~
/build/minc-tools-2.3.00+dfsg/conversion/micropet/upet2mnc.c:537:19: note: in expansion of macro 'VERSIONSTR'
537 | argv_tmp[1] = VERSIONSTR;
| ^~~~~~~~~~
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
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[ 89%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/minctoecat/machine_indep.c
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[ 89%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/file_io.c
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[ 90%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/group.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/group.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/group.c
[ 91%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/message.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/message.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/message.c
[ 91%] Building C object conversion/CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/Acr_nema/value_repr.c
[ 92%] Linking C executable minctoecat
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/minctoecat.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/minctoecat.dir/minctoecat/minctoecat.c.o CMakeFiles/minctoecat.dir/minctoecat/ecat_write.c.o CMakeFiles/minctoecat.dir/minctoecat/machine_indep.c.o -o minctoecat -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lminc2 -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -lm -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -ldl -lrt -lnetcdf -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lm -ldl -lrt -lnetcdf
[ 93%] Linking C executable ecattominc
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/ecattominc.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/ecattominc.dir/ecattominc/ecattominc.c.o CMakeFiles/ecattominc.dir/ecattominc/insertblood.c.o CMakeFiles/ecattominc.dir/ecattominc/ecat_file.c.o CMakeFiles/ecattominc.dir/ecattominc/machine_indep.c.o -o ecattominc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf
[ 93%] Linking C executable upet2mnc
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/upet2mnc.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/upet2mnc.dir/micropet/upet2mnc.c.o -o upet2mnc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf -ldl -lm -lm -ldl -lrt -lnetcdf
[ 94%] Linking C static library libacr_nema.a
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cmake -P CMakeFiles/acr_nema.dir/cmake_clean_target.cmake
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/acr_nema.dir/link.txt --verbose=1
/usr/bin/ar qc libacr_nema.a CMakeFiles/acr_nema.dir/Acr_nema/acr_io.c.o CMakeFiles/acr_nema.dir/Acr_nema/dicom_client_routines.c.o CMakeFiles/acr_nema.dir/Acr_nema/dicom_network.c.o CMakeFiles/acr_nema.dir/Acr_nema/element.c.o CMakeFiles/acr_nema.dir/Acr_nema/file_io.c.o CMakeFiles/acr_nema.dir/Acr_nema/globals.c.o CMakeFiles/acr_nema.dir/Acr_nema/group.c.o CMakeFiles/acr_nema.dir/Acr_nema/message.c.o CMakeFiles/acr_nema.dir/Acr_nema/value_repr.c.o
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make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
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make -f conversion/CMakeFiles/dcm2mnc.dir/build.make conversion/CMakeFiles/dcm2mnc.dir/depend
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/minc-tools-2.3.00+dfsg /build/minc-tools-2.3.00+dfsg/conversion /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/dcm2mnc.dir/DependInfo.cmake --color=
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/dcm2mnc.dir/DependInfo.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/dcm2mnc.dir/depend.internal".
Dependee "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion/CMakeFiles/dcm2mnc.dir/depend.internal".
Scanning dependencies of target dcm2mnc
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
make -f conversion/CMakeFiles/dcm2mnc.dir/build.make conversion/CMakeFiles/dcm2mnc.dir/build
make[3]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 95%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_to_minc.c
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[ 96%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o
[ 98%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o
[ 98%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/siemens_to_dicom.c
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c
[ 98%] Built target ecattominc
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c
[ 98%] Built target minctoecat
[ 98%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o
[ 98%] Built target upet2mnc
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dicom_read.c
[ 99%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/string_to_filename.c
[100%] Building C object conversion/CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cc -DHAVE_CONFIG_H -DHAVE_MINC1=1 -DHAVE_MINC2=1 -DMINC2=1 -I/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu -I/build/minc-tools-2.3.00+dfsg/conversion/Acr_nema -I/usr/include/nifti -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -o CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o -c /build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/progress.c
/build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c: In function 'setup_minc_variables':
/build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/minc_file.c:1084:17: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
1084 | fread(data, 1, length, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~
/build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:179:26: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
179 | {NULL, ARGV_VERINFO, VERSION_STRING, NULL, NULL },
| ^~~~~~~~~~~~~~
/build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:168:41: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
168 | #define VERSION_STRING "2.01.02 built " __DATE__ " " __TIME__
| ^~~~~~~~
/build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:179:26: note: in expansion of macro 'VERSION_STRING'
179 | {NULL, ARGV_VERINFO, VERSION_STRING, NULL, NULL },
| ^~~~~~~~~~~~~~
/build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c: In function 'is_cdexport_file':
/build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:1019:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
1019 | fread(tst_str, 1, DICM_MAGIC_SIZE, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c: In function 'is_ima_file':
/build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:1042:9: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result]
1042 | fread(mfg_str, 1, IMA_MAGIC_SIZE, fp);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c: In function 'use_the_files':
/build/minc-tools-2.3.00+dfsg/conversion/dcm2mnc/dcm2mnc.c:980:17: warning: ignoring return value of 'fscanf' declared with attribute 'warn_unused_result' [-Wunused-result]
980 | fscanf(fp, "%s", pipe_output_name);
| ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[100%] Linking C executable dcm2mnc
cd /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/conversion && /usr/bin/cmake -E cmake_link_script CMakeFiles/dcm2mnc.dir/link.txt --verbose=1
/usr/bin/cc -g -O2 -fdebug-prefix-map=/build/minc-tools-2.3.00+dfsg=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic CMakeFiles/dcm2mnc.dir/dcm2mnc/dcm2mnc.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_to_minc.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/siemens_to_dicom.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/dicom_read.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/minc_file.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/progress.c.o CMakeFiles/dcm2mnc.dir/dcm2mnc/string_to_filename.c.o -o dcm2mnc -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -lm -ldl -lrt -lnetcdf libacr_nema.a -lminc2 -lhdf5 -lpthread -lsz -lz -ldl -lm -lz -ldl -lm -lm -ldl -lrt -lnetcdf
make[3]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
[100%] Built target dcm2mnc
make[2]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
/usr/bin/cmake -E cmake_progress_start /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu/CMakeFiles 0
make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
dh_auto_test
cd obj-aarch64-linux-gnu && make -j8 test ARGS\+=-j8
make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
Running tests...
/usr/bin/ctest --force-new-ctest-process -j8
Test project /build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu
Start 1: mincinfo-test
Start 2: mincstats-test
Start 3: mincaverage-test
Start 4: minccalc-test
Start 5: mincresample-test
Start 6: mincreshape-test
1/6 Test #5: mincresample-test ................ Passed 0.26 sec
2/6 Test #3: mincaverage-test ................. Passed 0.29 sec
3/6 Test #2: mincstats-test ................... Passed 0.34 sec
4/6 Test #1: mincinfo-test .................... Passed 0.46 sec
5/6 Test #6: mincreshape-test ................. Passed 0.54 sec
6/6 Test #4: minccalc-test .................... Passed 0.74 sec
100% tests passed, 0 tests failed out of 6
Total Test time (real) = 0.75 sec
make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
create-stamp debian/debhelper-build-stamp
dh_prep
dh_auto_install
cd obj-aarch64-linux-gnu && make -j8 install DESTDIR=/build/minc-tools-2.3.00\+dfsg/debian/minc-tools AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true"
make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
/usr/bin/cmake -S/build/minc-tools-2.3.00+dfsg -B/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "None"
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minccalc
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincgen
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/invert_raw_image
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincaverage
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincconcat
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincconvert
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minccopy
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincdump
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincblob
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minccmp
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincexpand
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincextract
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincinfo
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minclookup
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmakescalar
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmakevector
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmath
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minc_modify_header
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincresample
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincreshape
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincstats
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minctoraw
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincwindow
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincmorph
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincsample
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/rawtominc
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/voxeltoworld
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/worldtovoxel
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/transformtags
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/xfmconcat
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/xfminvert
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincdiff
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincedit
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincheader
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincview
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minchistory
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mincpik
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/voxeltoworld.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincaverage.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincblob.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minccalc.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minccmp.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincconcat.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincconvert.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minccopy.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincdiff.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincdump.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincedit.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincexpand.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincextract.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincgen.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincheader.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincinfo.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minclookup.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincmakescalar.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincmakevector.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincmath.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minc_modify_header.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincresample.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincreshape.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincsample.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincstats.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minctoraw.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/invert_raw_image.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincview.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mincwindow.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/rawtominc.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/transformtags.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfm2def.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfmconcat.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfmflip.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/xfminvert.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/dcm2mnc
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/ecattominc
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/minctoecat
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/mnc2nii
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/nii2mnc
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/bin/upet2mnc
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/dcm2mnc.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/ecattominc.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/upet2mnc.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/minctoecat.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/mnc2nii.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/nii2mnc.1
-- Installing: /build/minc-tools-2.3.00+dfsg/debian/minc-tools/usr/man/man1/vff2mnc.1
make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg/obj-aarch64-linux-gnu'
debian/rules override_dh_install
make[1]: Entering directory '/build/minc-tools-2.3.00+dfsg'
cd debian/minc-tools && mkdir -p usr/share && mv usr/man usr/share
dh_link /usr/share/man/man1/voxeltoworld.1 \
/usr/share/man/man1/worldtovoxel.1
for pl in `grep -Rl '#![[:space:]]*/usr/bin/env[[:space:]]\+perl' debian/*/usr/*` ; do \
sed -i '1s?^#![[:space:]]*/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \
done
make[1]: Leaving directory '/build/minc-tools-2.3.00+dfsg'
dh_installdocs
dh_installchangelogs
dh_installman
dh_perl
dh_link
dh_strip_nondeterminism
dh_compress
dh_fixperms
dh_missing
dh_dwz -a
dwz: debian/minc-tools/usr/bin/dcm2mnc: DWARF compression not beneficial - old size 202945 new size 203747
dh_strip -a
dh_makeshlibs -a
dh_shlibdeps -a
dh_installdeb
dh_gencontrol
dpkg-gencontrol: warning: package minc-tools: substitution variable ${perl:Depends} unused, but is defined
dpkg-gencontrol: warning: package minc-tools: substitution variable ${perl:Depends} unused, but is defined
dh_md5sums
dh_builddeb
dpkg-deb: building package 'minc-tools-dbgsym' in '../minc-tools-dbgsym_2.3.00+dfsg-6_arm64.deb'.
dpkg-deb: building package 'minc-tools' in '../minc-tools_2.3.00+dfsg-6_arm64.deb'.
dpkg-genbuildinfo --build=binary
dpkg-genchanges --build=binary >../minc-tools_2.3.00+dfsg-6_arm64.changes
dpkg-genchanges: info: binary-only upload (no source code included)
dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
dpkg-genchanges: info: not including original source code in upload
I: copying local configuration
I: unmounting dev/ptmx filesystem
I: unmounting dev/pts filesystem
I: unmounting dev/shm filesystem
I: unmounting proc filesystem
I: unmounting sys filesystem
I: cleaning the build env
I: removing directory /srv/workspace/pbuilder/11996 and its subdirectories
I: Current time: Sun Jul 11 14:10:29 -12 2021
I: pbuilder-time-stamp: 1626055829
Mon Jul 12 02:10:31 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink15-arm64.debian.net.
Mon Jul 12 02:10:31 UTC 2021 I: Preparing to do remote build '2' on codethink15-arm64.debian.net.
Mon Jul 12 02:12:26 UTC 2021 I: Deleting $TMPDIR on codethink15-arm64.debian.net.
Mon Jul 12 02:12:27 UTC 2021 I: minc-tools_2.3.00+dfsg-6_arm64.changes:
Format: 1.8
Date: Tue, 08 Dec 2020 13:04:16 +0100
Source: minc-tools
Binary: minc-tools minc-tools-dbgsym
Architecture: arm64
Version: 2.3.00+dfsg-6
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Andreas Tille <tille@debian.org>
Description:
minc-tools - MNI medical image format tools
Closes: 976825
Changes:
minc-tools (2.3.00+dfsg-6) unstable; urgency=medium
.
* Versioned Build-Depends: libnifti2-dev (>= 3.0.1-4~)
Closes: #976825
Checksums-Sha1:
e58efb2ffec2ba2d04bd0edf72fabe465116f3bd 714352 minc-tools-dbgsym_2.3.00+dfsg-6_arm64.deb
16891e7b05d8dd7ecbd04dc2bbebb7a1cf027cb0 7939 minc-tools_2.3.00+dfsg-6_arm64.buildinfo
eb6cff62bb07240f2190d082450e2612375a2a16 381608 minc-tools_2.3.00+dfsg-6_arm64.deb
Checksums-Sha256:
b4720ee0ff07a0ff4adf6c83daf118b5bf96213cc44f8d4cc7e345af5e19545a 714352 minc-tools-dbgsym_2.3.00+dfsg-6_arm64.deb
81f0e5be9374c202f2178ff9c1d9a10a09b73894bbd1731e4f329833a5f3cf8f 7939 minc-tools_2.3.00+dfsg-6_arm64.buildinfo
e2928752cc146810356a4c7710259e36c41c614866e52a7f04747e7389f31866 381608 minc-tools_2.3.00+dfsg-6_arm64.deb
Files:
96791a72dfd8ee37c00d0694c0dd7cd5 714352 debug optional minc-tools-dbgsym_2.3.00+dfsg-6_arm64.deb
e47ae70ea9749ecd6ed54cdc2ef4a66b 7939 science optional minc-tools_2.3.00+dfsg-6_arm64.buildinfo
8f63a387b384070bc98766fb1c530a97 381608 science optional minc-tools_2.3.00+dfsg-6_arm64.deb
Mon Jul 12 02:12:28 UTC 2021 I: diffoscope 177 will be used to compare the two builds:
# Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.9DQJtt2vYz/minc-tools_2.3.00+dfsg-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.9DQJtt2vYz/minc-tools_2.3.00+dfsg-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.9DQJtt2vYz/minc-tools_2.3.00+dfsg-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.9DQJtt2vYz/b1/minc-tools_2.3.00+dfsg-6_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.9DQJtt2vYz/b2/minc-tools_2.3.00+dfsg-6_arm64.changes
## command (total time: 0.000s)
0.000s 1 call cmp (internal)
## has_same_content_as (total time: 0.000s)
0.000s 1 call abc.DotChangesFile
## main (total time: 0.293s)
0.293s 2 calls outputs
0.000s 1 call cleanup
## recognizes (total time: 0.026s)
0.026s 10 calls diffoscope.comparators.binary.FilesystemFile
0.000s 8 calls abc.DotChangesFile
Mon Jul 12 02:12:29 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists.
Mon Jul 12 02:12:29 UTC 2021 I: minc-tools from bullseye built successfully and reproducibly on arm64.
Mon Jul 12 02:12:31 UTC 2021 I: Submitting .buildinfo files to external archives:
Mon Jul 12 02:12:31 UTC 2021 I: Submitting 12K b1/minc-tools_2.3.00+dfsg-6_arm64.buildinfo.asc
Mon Jul 12 02:12:31 UTC 2021 I: Submitting 12K b2/minc-tools_2.3.00+dfsg-6_arm64.buildinfo.asc
Mon Jul 12 02:12:32 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit.
Mon Jul 12 02:12:32 UTC 2021 I: Done submitting .buildinfo files.
Mon Jul 12 02:12:32 UTC 2021 I: Removing signed minc-tools_2.3.00+dfsg-6_arm64.buildinfo.asc files:
removed './b1/minc-tools_2.3.00+dfsg-6_arm64.buildinfo.asc'
removed './b2/minc-tools_2.3.00+dfsg-6_arm64.buildinfo.asc'