Wed Aug 11 17:38:02 UTC 2021 I: starting to build kleborate/bullseye/arm64 on jenkins on '2021-08-11 17:37' Wed Aug 11 17:38:02 UTC 2021 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_30/15888/console.log Wed Aug 11 17:38:02 UTC 2021 I: Downloading source for bullseye/kleborate=2.0.1-1 --2021-08-11 17:38:02-- http://cdn-fastly.deb.debian.org/debian/pool/main/k/kleborate/kleborate_2.0.1-1.dsc Connecting to 78.137.99.97:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2213 (2.2K) Saving to: ‘kleborate_2.0.1-1.dsc’ 0K .. 100% 174M=0s 2021-08-11 17:38:02 (174 MB/s) - ‘kleborate_2.0.1-1.dsc’ saved [2213/2213] Wed Aug 11 17:38:02 UTC 2021 I: kleborate_2.0.1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: kleborate Binary: kleborate, kleborate-examples Architecture: any all Version: 2.0.1-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/katholt/Kleborate Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/kleborate Vcs-Git: https://salsa.debian.org/med-team/kleborate.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, ncbi-blast+ , mash , kaptive Package-List: kleborate deb science optional arch=any kleborate-examples deb science optional arch=all Checksums-Sha1: 6f0091e94d93b0671ee4cef0eb49350eabb5f0c9 83407520 kleborate_2.0.1.orig.tar.gz 3ab1f4e12b38fd1a8f19d5ed4d4d23feeb3aa69a 5994804 kleborate_2.0.1-1.debian.tar.xz Checksums-Sha256: 215299b694e7815bd3bb4d967a0b5e686a536becb1141796b1a5d0eeabe0c6c7 83407520 kleborate_2.0.1.orig.tar.gz 9d8f4806bb9193721fa8b8f3492b654fa06da7ae63db2dedb59c1d8781eb3920 5994804 kleborate_2.0.1-1.debian.tar.xz Files: 82dfb8cded9406c7429a8ff5de1dd11e 83407520 kleborate_2.0.1.orig.tar.gz a58df430cd3cfe6a5e6166e805e48ffb 5994804 kleborate_2.0.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl/P6QAUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafFGuw//bx/jQ+8NqNpQNoXUph4g/virU5H9 g7RG6Y5pbURL0XDdTtX4V5fVfiS5kgHPlroQvVA32lI0v/ciJ0Dd/EA2AJ2XUKy6 Fgpxf209qNA06ka3r7MTStgOagqCVXrpObS2hg6W5q2apMoi8D8wncgCbMasH8nv nh4wJpQFIMiOQwQkKPcYzhUFMc6ohUneU4mBy1WT51Ime9dGw8QS9IYARQekxzyK +sOT2ZXEHB7DjCn9+jM+PsugdJZBuavGITb6zjOHGBWdFr8+IKa0zwD0LRHJ/Z9d 0mU0vDeHcOzgXeyRHQD5C/3aJ9bgz1OM67P/ehGokIgQuGvP1D9zlpqPm7G0yy4C QzTnYnIovQOmug5mKZqmRURmsLMDov/Vyd/uw4A7CibX97A5qszTjFTQ4ycEA3se yBj6mchzXBN+C/MFNrn5GDVxprpmHipkAGkPAedYS2Zu0naTDq/OHn2RULIYuYOt lqKs0NNUgrl8AkFVOZ2zjziWAevj1PDj4pkvdAfBkgZAcaj1/3ln/3wbeoPAxqAn xd5wbFYEkzpb8EqqtxKDb7SXsA8BOYen7MuJ+GNdiX1vXZctt5KJP1DpHneNzPVT +KUIVrpWiLePKFZhuEZPMQgKeQkraV6tKhxK3wqJ6npIEiQgC9aAE2vIKBJ9prpv cyRZB7E0Ica03Jg= =OELA -----END PGP SIGNATURE----- Wed Aug 11 17:38:02 UTC 2021 I: Checking whether the package is not for us Wed Aug 11 17:38:02 UTC 2021 I: Starting 1st build on remote node codethink16-arm64.debian.net. Wed Aug 11 17:38:02 UTC 2021 I: Preparing to do remote build '1' on codethink16-arm64.debian.net. Wed Aug 11 17:45:36 UTC 2021 I: Deleting $TMPDIR on codethink16-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Aug 11 05:38:17 -12 2021 I: pbuilder-time-stamp: 1628703497 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [kleborate_2.0.1-1.dsc] I: copying [./kleborate_2.0.1.orig.tar.gz] I: copying [./kleborate_2.0.1-1.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.B7zJuyJp/trustedkeys.kbx': General error gpgv: Signature made Tue Dec 8 08:58:40 2020 -12 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./kleborate_2.0.1-1.dsc dpkg-source: info: extracting kleborate in kleborate-2.0.1 dpkg-source: info: unpacking kleborate_2.0.1.orig.tar.gz dpkg-source: info: unpacking kleborate_2.0.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying python3.patch dpkg-source: info: applying use_debian_installed_kaptive.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/11677/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=8' DISTRIBUTION='' HOME='/var/lib/jenkins' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='11677' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/tmp.pQHUs3DCyW/pbuilderrc_uKD3 --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/tmp.pQHUs3DCyW/b1 --logfile b1/build.log kleborate_2.0.1-1.dsc' SUDO_GID='117' SUDO_UID='110' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' USERNAME='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.16:3128' I: uname -a Linux codethink16-arm64 4.15.0-153-generic #160-Ubuntu SMP Thu Jul 29 07:06:07 UTC 2021 aarch64 GNU/Linux I: ls -l /bin total 5252 -rwxr-xr-x 1 root root 1282512 Aug 4 08:25 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Jul 28 07:09 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Nov 9 2020 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Nov 9 2020 fgrep -rwxr-xr-x 1 root root 64856 Jul 28 07:09 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 04:12 fusermount -rwxr-xr-x 1 root root 178400 Nov 9 2020 grep -rwxr-xr-x 2 root root 2346 Mar 2 11:30 gunzip -rwxr-xr-x 1 root root 6376 Mar 2 11:30 gzexe -rwxr-xr-x 1 root root 93744 Mar 2 11:30 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 161960 Jul 28 07:09 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Jul 28 07:09 more -rwsr-xr-x 1 root root 51360 Jul 28 07:09 mount -rwxr-xr-x 1 root root 14496 Jul 28 07:09 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 18 03:38 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Aug 4 08:25 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Aug 9 21:24 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Jul 28 07:09 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 535768 Feb 16 21:55 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 04:12 ulockmgr_server -rwsr-xr-x 1 root root 30880 Jul 28 07:09 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Mar 2 11:30 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Jul 28 07:09 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Mar 2 11:30 zcat -rwxr-xr-x 1 root root 1678 Mar 2 11:30 zcmp -rwxr-xr-x 1 root root 5880 Mar 2 11:30 zdiff -rwxr-xr-x 1 root root 29 Mar 2 11:30 zegrep -rwxr-xr-x 1 root root 29 Mar 2 11:30 zfgrep -rwxr-xr-x 1 root root 2081 Mar 2 11:30 zforce -rwxr-xr-x 1 root root 7585 Mar 2 11:30 zgrep -rwxr-xr-x 1 root root 2206 Mar 2 11:30 zless -rwxr-xr-x 1 root root 1842 Mar 2 11:30 zmore -rwxr-xr-x 1 root root 4553 Mar 2 11:30 znew I: user script /srv/workspace/pbuilder/11677/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3, python3-setuptools, ncbi-blast+, mash, kaptive dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on mash; however: Package mash is not installed. pbuilder-satisfydepends-dummy depends on kaptive; however: Package kaptive is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} kaptive{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libbsd0{a} libcapnp-0.7.0{a} libdebhelper-perl{a} libdeflate0{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfreetype6{a} libgfortran5{a} libgsl25{a} libgslcblas0{a} libicu67{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} liblapack3{a} liblcms2-2{a} liblmdb0{a} libmagic-mgc{a} libmagic1{a} libmbedcrypto3{a} libmbedtls12{a} libmbedx509-0{a} libmd0{a} libmpdec3{a} libmurmurhash2{a} libpipeline1{a} libpng16-16{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libsigsegv2{a} libsub-override-perl{a} libtiff5{a} libtool{a} libuchardet0{a} libwebp6{a} libwebpdemux2{a} libwebpmux3{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} m4{a} mailcap{a} man-db{a} mash{a} media-types{a} mime-support{a} ncbi-blast+{a} ncbi-data{a} po-debconf{a} python3{a} python3-biopython{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-numpy{a} python3-pil{a} python3-pkg-resources{a} python3-reportlab{a} python3-reportlab-accel{a} python3-setuptools{a} python3.9{a} python3.9-minimal{a} readline-common{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python-biopython-doc python3-olefile python3-renderpm wget 0 packages upgraded, 87 newly installed, 0 to remove and 0 not upgraded. Need to get 50.4 MB of archives. After unpacking 219 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian bullseye/main arm64 bsdextrautils arm64 2.36.1-8 [142 kB] Get: 2 http://deb.debian.org/debian bullseye/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get: 3 http://deb.debian.org/debian bullseye/main arm64 groff-base arm64 1.22.4-6 [883 kB] Get: 4 http://deb.debian.org/debian bullseye/main arm64 libpipeline1 arm64 1.5.3-1 [33.0 kB] Get: 5 http://deb.debian.org/debian bullseye/main arm64 man-db arm64 2.9.4-2 [1336 kB] Get: 6 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-minimal arm64 3.9.2-1 [797 kB] Get: 7 http://deb.debian.org/debian bullseye/main arm64 libexpat1 arm64 2.2.10-2 [83.1 kB] Get: 8 http://deb.debian.org/debian bullseye/main arm64 python3.9-minimal arm64 3.9.2-1 [1884 kB] Get: 9 http://deb.debian.org/debian bullseye/main arm64 python3-minimal arm64 3.9.2-3 [38.2 kB] Get: 10 http://deb.debian.org/debian bullseye/main arm64 media-types all 4.0.0 [30.3 kB] Get: 11 http://deb.debian.org/debian bullseye/main arm64 mailcap all 3.69 [31.7 kB] Get: 12 http://deb.debian.org/debian bullseye/main arm64 mime-support all 3.66 [10.9 kB] Get: 13 http://deb.debian.org/debian bullseye/main arm64 libmpdec3 arm64 2.5.1-1 [84.4 kB] Get: 14 http://deb.debian.org/debian bullseye/main arm64 readline-common all 8.1-1 [73.7 kB] Get: 15 http://deb.debian.org/debian bullseye/main arm64 libreadline8 arm64 8.1-1 [160 kB] Get: 16 http://deb.debian.org/debian bullseye/main arm64 libpython3.9-stdlib arm64 3.9.2-1 [1658 kB] Get: 17 http://deb.debian.org/debian bullseye/main arm64 python3.9 arm64 3.9.2-1 [466 kB] Get: 18 http://deb.debian.org/debian bullseye/main arm64 libpython3-stdlib arm64 3.9.2-3 [21.4 kB] Get: 19 http://deb.debian.org/debian bullseye/main arm64 python3 arm64 3.9.2-3 [37.9 kB] Get: 20 http://deb.debian.org/debian bullseye/main arm64 sensible-utils all 0.0.14 [14.8 kB] Get: 21 http://deb.debian.org/debian bullseye/main arm64 libmagic-mgc arm64 1:5.39-3 [273 kB] Get: 22 http://deb.debian.org/debian bullseye/main arm64 libmagic1 arm64 1:5.39-3 [121 kB] Get: 23 http://deb.debian.org/debian bullseye/main arm64 file arm64 1:5.39-3 [69.1 kB] Get: 24 http://deb.debian.org/debian bullseye/main arm64 gettext-base arm64 0.21-4 [173 kB] Get: 25 http://deb.debian.org/debian bullseye/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get: 26 http://deb.debian.org/debian bullseye/main arm64 m4 arm64 1.4.18-5 [199 kB] Get: 27 http://deb.debian.org/debian bullseye/main arm64 autoconf all 2.69-14 [313 kB] Get: 28 http://deb.debian.org/debian bullseye/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get: 29 http://deb.debian.org/debian bullseye/main arm64 automake all 1:1.16.3-2 [814 kB] Get: 30 http://deb.debian.org/debian bullseye/main arm64 autopoint all 0.21-4 [510 kB] Get: 31 http://deb.debian.org/debian bullseye/main arm64 libdebhelper-perl all 13.3.4 [189 kB] Get: 32 http://deb.debian.org/debian bullseye/main arm64 libtool all 2.4.6-15 [513 kB] Get: 33 http://deb.debian.org/debian bullseye/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian bullseye/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian bullseye/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get: 36 http://deb.debian.org/debian bullseye/main arm64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get: 37 http://deb.debian.org/debian bullseye/main arm64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get: 38 http://deb.debian.org/debian bullseye/main arm64 libelf1 arm64 0.183-1 [164 kB] Get: 39 http://deb.debian.org/debian bullseye/main arm64 dwz arm64 0.13+20210201-1 [155 kB] Get: 40 http://deb.debian.org/debian bullseye/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get: 41 http://deb.debian.org/debian bullseye/main arm64 libxml2 arm64 2.9.10+dfsg-6.7 [629 kB] Get: 42 http://deb.debian.org/debian bullseye/main arm64 gettext arm64 0.21-4 [1261 kB] Get: 43 http://deb.debian.org/debian bullseye/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get: 44 http://deb.debian.org/debian bullseye/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian bullseye/main arm64 debhelper all 13.3.4 [1049 kB] Get: 46 http://deb.debian.org/debian bullseye/main arm64 python3-lib2to3 all 3.9.2-1 [77.8 kB] Get: 47 http://deb.debian.org/debian bullseye/main arm64 python3-distutils all 3.9.2-1 [143 kB] Get: 48 http://deb.debian.org/debian bullseye/main arm64 dh-python all 4.20201102+nmu1 [99.4 kB] Get: 49 http://deb.debian.org/debian bullseye/main arm64 python3-pkg-resources all 52.0.0-4 [190 kB] Get: 50 http://deb.debian.org/debian bullseye/main arm64 libblas3 arm64 3.9.0-3 [101 kB] Get: 51 http://deb.debian.org/debian bullseye/main arm64 libgfortran5 arm64 10.2.1-6 [333 kB] Get: 52 http://deb.debian.org/debian bullseye/main arm64 liblapack3 arm64 3.9.0-3 [1541 kB] Get: 53 http://deb.debian.org/debian bullseye/main arm64 python3-numpy arm64 1:1.19.5-1 [3196 kB] Get: 54 http://deb.debian.org/debian bullseye/main arm64 python3-reportlab-accel arm64 3.5.59-2 [38.6 kB] Get: 55 http://deb.debian.org/debian bullseye/main arm64 libbrotli1 arm64 1.0.9-2+b2 [267 kB] Get: 56 http://deb.debian.org/debian bullseye/main arm64 libpng16-16 arm64 1.6.37-3 [289 kB] Get: 57 http://deb.debian.org/debian bullseye/main arm64 libfreetype6 arm64 2.10.4+dfsg-1 [393 kB] Get: 58 http://deb.debian.org/debian bullseye/main arm64 libimagequant0 arm64 2.12.2-1.1 [30.3 kB] Get: 59 http://deb.debian.org/debian bullseye/main arm64 libjpeg62-turbo arm64 1:2.0.6-4 [133 kB] Get: 60 http://deb.debian.org/debian bullseye/main arm64 liblcms2-2 arm64 2.12~rc1-2 [140 kB] Get: 61 http://deb.debian.org/debian bullseye/main arm64 libdeflate0 arm64 1.7-1 [47.7 kB] Get: 62 http://deb.debian.org/debian bullseye/main arm64 libjbig0 arm64 2.1-3.1+b2 [27.8 kB] Get: 63 http://deb.debian.org/debian bullseye/main arm64 libwebp6 arm64 0.6.1-2.1 [244 kB] Get: 64 http://deb.debian.org/debian bullseye/main arm64 libtiff5 arm64 4.2.0-1 [276 kB] Get: 65 http://deb.debian.org/debian bullseye/main arm64 libwebpdemux2 arm64 0.6.1-2.1 [87.5 kB] Get: 66 http://deb.debian.org/debian bullseye/main arm64 libwebpmux3 arm64 0.6.1-2.1 [96.7 kB] Get: 67 http://deb.debian.org/debian bullseye/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get: 68 http://deb.debian.org/debian bullseye/main arm64 libmd0 arm64 1.0.3-3 [27.9 kB] Get: 69 http://deb.debian.org/debian bullseye/main arm64 libbsd0 arm64 0.11.3-1 [106 kB] Get: 70 http://deb.debian.org/debian bullseye/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get: 71 http://deb.debian.org/debian bullseye/main arm64 libxcb1 arm64 1.14-3 [138 kB] Get: 72 http://deb.debian.org/debian bullseye/main arm64 python3-pil arm64 8.1.2+dfsg-0.3 [428 kB] Get: 73 http://deb.debian.org/debian bullseye/main arm64 python3-reportlab all 3.5.59-2 [575 kB] Get: 74 http://deb.debian.org/debian bullseye/main arm64 python3-biopython arm64 1.78+dfsg-4 [1389 kB] Get: 75 http://deb.debian.org/debian bullseye/main arm64 ncbi-data all 6.1.20170106+dfsg1-9 [3556 kB] Get: 76 http://deb.debian.org/debian bullseye/main arm64 liblmdb0 arm64 0.9.24-1 [43.7 kB] Get: 77 http://deb.debian.org/debian bullseye/main arm64 libmbedcrypto3 arm64 2.16.9-0.1 [211 kB] Get: 78 http://deb.debian.org/debian bullseye/main arm64 libmbedx509-0 arm64 2.16.9-0.1 [108 kB] Get: 79 http://deb.debian.org/debian bullseye/main arm64 libmbedtls12 arm64 2.16.9-0.1 [132 kB] Get: 80 http://deb.debian.org/debian bullseye/main arm64 ncbi-blast+ arm64 2.11.0+ds-1 [10.2 MB] Get: 81 http://deb.debian.org/debian bullseye/main arm64 kaptive all 0.7.3-3 [32.6 kB] Get: 82 http://deb.debian.org/debian bullseye/main arm64 libcapnp-0.7.0 arm64 0.7.0-7 [934 kB] Get: 83 http://deb.debian.org/debian bullseye/main arm64 libgslcblas0 arm64 2.6+dfsg-2 [73.4 kB] Get: 84 http://deb.debian.org/debian bullseye/main arm64 libgsl25 arm64 2.6+dfsg-2 [812 kB] Get: 85 http://deb.debian.org/debian bullseye/main arm64 libmurmurhash2 arm64 1.5-2 [6028 B] Get: 86 http://deb.debian.org/debian bullseye/main arm64 mash arm64 2.2.2+dfsg-2 [134 kB] Get: 87 http://deb.debian.org/debian bullseye/main arm64 python3-setuptools all 52.0.0-4 [366 kB] Fetched 50.4 MB in 3s (19.2 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package bsdextrautils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19646 files and directories currently installed.) Preparing to unpack .../0-bsdextrautils_2.36.1-8_arm64.deb ... Unpacking bsdextrautils (2.36.1-8) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../1-libuchardet0_0.0.7-1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../2-groff-base_1.22.4-6_arm64.deb ... 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Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20513 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.9.2-3_arm64.deb ... Unpacking python3-minimal (3.9.2-3) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_4.0.0_all.deb ... Unpacking media-types (4.0.0) ... Selecting previously unselected package mailcap. 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Unpacking python3 (3.9.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.39-3_arm64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../03-libmagic1_1%3a5.39-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.39-3_arm64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package libsigsegv2:arm64. Preparing to unpack .../06-libsigsegv2_2.13-1_arm64.deb ... Unpacking libsigsegv2:arm64 (2.13-1) ... Selecting previously unselected package m4. 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Unpacking libpng16-16:arm64 (1.6.37-3) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../38-libfreetype6_2.10.4+dfsg-1_arm64.deb ... Unpacking libfreetype6:arm64 (2.10.4+dfsg-1) ... Selecting previously unselected package libimagequant0:arm64. Preparing to unpack .../39-libimagequant0_2.12.2-1.1_arm64.deb ... Unpacking libimagequant0:arm64 (2.12.2-1.1) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../40-libjpeg62-turbo_1%3a2.0.6-4_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.0.6-4) ... Selecting previously unselected package liblcms2-2:arm64. Preparing to unpack .../41-liblcms2-2_2.12~rc1-2_arm64.deb ... Unpacking liblcms2-2:arm64 (2.12~rc1-2) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../42-libdeflate0_1.7-1_arm64.deb ... Unpacking libdeflate0:arm64 (1.7-1) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../43-libjbig0_2.1-3.1+b2_arm64.deb ... Unpacking libjbig0:arm64 (2.1-3.1+b2) ... Selecting previously unselected package libwebp6:arm64. Preparing to unpack .../44-libwebp6_0.6.1-2.1_arm64.deb ... Unpacking libwebp6:arm64 (0.6.1-2.1) ... Selecting previously unselected package libtiff5:arm64. Preparing to unpack .../45-libtiff5_4.2.0-1_arm64.deb ... Unpacking libtiff5:arm64 (4.2.0-1) ... Selecting previously unselected package libwebpdemux2:arm64. Preparing to unpack .../46-libwebpdemux2_0.6.1-2.1_arm64.deb ... Unpacking libwebpdemux2:arm64 (0.6.1-2.1) ... Selecting previously unselected package libwebpmux3:arm64. Preparing to unpack .../47-libwebpmux3_0.6.1-2.1_arm64.deb ... Unpacking libwebpmux3:arm64 (0.6.1-2.1) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../48-libxau6_1%3a1.0.9-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.9-1) ... Selecting previously unselected package libmd0:arm64. Preparing to unpack .../49-libmd0_1.0.3-3_arm64.deb ... Unpacking libmd0:arm64 (1.0.3-3) ... Selecting previously unselected package libbsd0:arm64. Preparing to unpack .../50-libbsd0_0.11.3-1_arm64.deb ... Unpacking libbsd0:arm64 (0.11.3-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../51-libxdmcp6_1%3a1.1.2-3_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.2-3) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../52-libxcb1_1.14-3_arm64.deb ... Unpacking libxcb1:arm64 (1.14-3) ... Selecting previously unselected package python3-pil:arm64. Preparing to unpack .../53-python3-pil_8.1.2+dfsg-0.3_arm64.deb ... Unpacking python3-pil:arm64 (8.1.2+dfsg-0.3) ... Selecting previously unselected package python3-reportlab. Preparing to unpack .../54-python3-reportlab_3.5.59-2_all.deb ... Unpacking python3-reportlab (3.5.59-2) ... Selecting previously unselected package python3-biopython. Preparing to unpack .../55-python3-biopython_1.78+dfsg-4_arm64.deb ... Unpacking python3-biopython (1.78+dfsg-4) ... Selecting previously unselected package ncbi-data. Preparing to unpack .../56-ncbi-data_6.1.20170106+dfsg1-9_all.deb ... Unpacking ncbi-data (6.1.20170106+dfsg1-9) ... Selecting previously unselected package liblmdb0:arm64. Preparing to unpack .../57-liblmdb0_0.9.24-1_arm64.deb ... Unpacking liblmdb0:arm64 (0.9.24-1) ... Selecting previously unselected package libmbedcrypto3:arm64. Preparing to unpack .../58-libmbedcrypto3_2.16.9-0.1_arm64.deb ... Unpacking libmbedcrypto3:arm64 (2.16.9-0.1) ... Selecting previously unselected package libmbedx509-0:arm64. Preparing to unpack .../59-libmbedx509-0_2.16.9-0.1_arm64.deb ... Unpacking libmbedx509-0:arm64 (2.16.9-0.1) ... Selecting previously unselected package libmbedtls12:arm64. Preparing to unpack .../60-libmbedtls12_2.16.9-0.1_arm64.deb ... Unpacking libmbedtls12:arm64 (2.16.9-0.1) ... Selecting previously unselected package ncbi-blast+. Preparing to unpack .../61-ncbi-blast+_2.11.0+ds-1_arm64.deb ... Unpacking ncbi-blast+ (2.11.0+ds-1) ... Selecting previously unselected package kaptive. Preparing to unpack .../62-kaptive_0.7.3-3_all.deb ... Unpacking kaptive (0.7.3-3) ... Selecting previously unselected package libcapnp-0.7.0:arm64. Preparing to unpack .../63-libcapnp-0.7.0_0.7.0-7_arm64.deb ... Unpacking libcapnp-0.7.0:arm64 (0.7.0-7) ... Selecting previously unselected package libgslcblas0:arm64. Preparing to unpack .../64-libgslcblas0_2.6+dfsg-2_arm64.deb ... Unpacking libgslcblas0:arm64 (2.6+dfsg-2) ... Selecting previously unselected package libgsl25:arm64. Preparing to unpack .../65-libgsl25_2.6+dfsg-2_arm64.deb ... Unpacking libgsl25:arm64 (2.6+dfsg-2) ... Selecting previously unselected package libmurmurhash2:arm64. Preparing to unpack .../66-libmurmurhash2_1.5-2_arm64.deb ... Unpacking libmurmurhash2:arm64 (1.5-2) ... Selecting previously unselected package mash. Preparing to unpack .../67-mash_2.2.2+dfsg-2_arm64.deb ... Unpacking mash (2.2.2+dfsg-2) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../68-python3-setuptools_52.0.0-4_all.deb ... Unpacking python3-setuptools (52.0.0-4) ... Setting up media-types (4.0.0) ... Setting up libpipeline1:arm64 (1.5.3-1) ... Setting up liblmdb0:arm64 (0.9.24-1) ... Setting up liblcms2-2:arm64 (2.12~rc1-2) ... Setting up ncbi-data (6.1.20170106+dfsg1-9) ... Setting up libxau6:arm64 (1:1.0.9-1) ... Setting up bsdextrautils (2.36.1-8) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:arm64 (67.1-7) ... Setting up libgslcblas0:arm64 (2.6+dfsg-2) ... Setting up libmurmurhash2:arm64 (1.5-2) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libgsl25:arm64 (2.6+dfsg-2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libbrotli1:arm64 (1.0.9-2+b2) ... Setting up libmagic1:arm64 (1:5.39-3) ... Setting up libdeflate0:arm64 (1.7-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up libcapnp-0.7.0:arm64 (0.7.0-7) ... Setting up libjbig0:arm64 (2.1-3.1+b2) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up libblas3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libjpeg62-turbo:arm64 (1:2.0.6-4) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up libimagequant0:arm64 (2.12.2-1.1) ... Setting up libpng16-16:arm64 (1.6.37-3) ... Setting up mash (2.2.2+dfsg-2) ... Setting up autopoint (0.21-4) ... Setting up libwebp6:arm64 (0.6.1-2.1) ... Setting up libgfortran5:arm64 (10.2.1-6) ... Setting up libmd0:arm64 (1.0.3-3) ... Setting up sensible-utils (0.0.14) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libmpdec3:arm64 (2.5.1-1) ... Setting up libmbedcrypto3:arm64 (2.16.9-0.1) ... Setting up libsub-override-perl (0.09-2) ... Setting up libtiff5:arm64 (4.2.0-1) ... Setting up libwebpmux3:arm64 (0.6.1-2.1) ... Setting up libbsd0:arm64 (0.11.3-1) ... Setting up mailcap (3.69) ... Setting up libelf1:arm64 (0.183-1) ... Setting up readline-common (8.1-1) ... Setting up libxml2:arm64 (2.9.10+dfsg-6.7) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up liblapack3:arm64 (3.9.0-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libxcb1:arm64 (1.14-3) ... Setting up gettext (0.21-4) ... Setting up mime-support (3.66) ... Setting up libtool (2.4.6-15) ... Setting up libmbedx509-0:arm64 (2.16.9-0.1) ... Setting up libwebpdemux2:arm64 (0.6.1-2.1) ... Setting up libreadline8:arm64 (8.1-1) ... Setting up libmbedtls12:arm64 (2.16.9-0.1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libfreetype6:arm64 (2.10.4+dfsg-1) ... Setting up autoconf (2.69-14) ... Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up libpython3.9-stdlib:arm64 (3.9.2-1) ... Setting up libpython3-stdlib:arm64 (3.9.2-3) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up dh-autoreconf (20) ... Setting up python3.9 (3.9.2-1) ... Setting up debhelper (13.3.4) ... Setting up python3 (3.9.2-3) ... Setting up ncbi-blast+ (2.11.0+ds-1) ... Setting up python3-pil:arm64 (8.1.2+dfsg-0.3) ... Setting up python3-reportlab-accel:arm64 (3.5.59-2) ... Setting up python3-reportlab (3.5.59-2) ... Setting up python3-lib2to3 (3.9.2-1) ... Setting up python3-pkg-resources (52.0.0-4) ... Setting up python3-distutils (3.9.2-1) ... Setting up dh-python (4.20201102+nmu1) ... Setting up python3-setuptools (52.0.0-4) ... Setting up python3-numpy (1:1.19.5-1) ... Setting up python3-biopython (1.78+dfsg-4) ... Setting up kaptive (0.7.3-3) ... Processing triggers for libc-bin (2.31-13) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/kleborate-2.0.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kleborate_2.0.1-1_source.changes dpkg-buildpackage: info: source package kleborate dpkg-buildpackage: info: source version 2.0.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py clean running clean removing '/build/kleborate-2.0.1/.pybuild/cpython3_3.9/build' (and everything under it) 'build/bdist.linux-arm64' does not exist -- can't clean it 'build/scripts-3.9' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:232: python3.9 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py build running build running build_py creating /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/kaptive.py -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/version.py -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/truncation.py -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/species.py -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/shv_mutations.py -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/rmpA.py -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/resBLAST.py -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/mlstBLAST.py -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/misc.py -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/contig_stats.py -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/blastn.py -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/__main__.py -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate copying kleborate/__init__.py -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate package init file 'kaptive/__init__.py' not found (or not a regular file) running egg_info creating Kleborate.egg-info writing Kleborate.egg-info/PKG-INFO writing dependency_links to Kleborate.egg-info/dependency_links.txt writing entry points to Kleborate.egg-info/entry_points.txt writing requirements to Kleborate.egg-info/requires.txt writing top-level names to Kleborate.egg-info/top_level.txt writing manifest file 'Kleborate.egg-info/SOURCES.txt' reading manifest file 'Kleborate.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'kleborate/ICEKp_references' warning: no directories found matching 'kaptive/reference_database' warning: no directories found matching 'kaptive/sample_data' writing manifest file 'Kleborate.egg-info/SOURCES.txt' creating /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/AbST_profiles.txt -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/CARD_AMR_clustered.csv -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/CARD_v3.0.8.fasta -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/CbST_profiles.txt -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/Klebsiella_pneumoniae.fasta -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/MgrB_and_PmrB.fasta -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/OmpK.fasta -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/QRDR_120.fasta -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/RmST_profiles.txt -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/SmST_profiles.txt -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/YbST_profiles.txt -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/clb_alleles.fasta -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/iro_alleles.fasta -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/iuc_alleles.fasta -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/kpneumoniae.txt -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/rmpA2.fasta -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/rmp_alleles.fasta -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/species_mash_sketches.msh -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/wzi.fasta -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/wzi.txt -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data copying kleborate/data/ybt_alleles.fasta -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data creating /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp1.embl -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp10.embl -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp11.embl -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp12.embl -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp13.embl -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp14.embl -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp2.embl -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp3.embl -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp4.embl -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp5.embl -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp6.embl -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp7.embl -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp8.embl -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references copying kleborate/data/ICEKp_references/ICEKp9.embl -> /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references dh_auto_test -O--buildsystem=pybuild I: pybuild base:232: cd /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build; python3.9 -m unittest discover -v test_ambiguous_bases_1 (test.test_contig_stats.TestContigStats) ... ok test_ambiguous_bases_2 (test.test_contig_stats.TestContigStats) ... ok test_ambiguous_bases_3 (test.test_contig_stats.TestContigStats) ... ok test_ambiguous_bases_4 (test.test_contig_stats.TestContigStats) ... ok test_count_1 (test.test_contig_stats.TestContigStats) ... ok test_count_2 (test.test_contig_stats.TestContigStats) ... ok test_longest_1 (test.test_contig_stats.TestContigStats) ... ok test_longest_2 (test.test_contig_stats.TestContigStats) ... ok test_n50_1 (test.test_contig_stats.TestContigStats) ... ok test_n50_2 (test.test_contig_stats.TestContigStats) ... ok test_qc_warnings_1 (test.test_contig_stats.TestContigStats) ... ok test_qc_warnings_2 (test.test_contig_stats.TestContigStats) ... ok test_qc_warnings_3 (test.test_contig_stats.TestContigStats) ... ok test_qc_warnings_4 (test.test_contig_stats.TestContigStats) ... ok test_qc_warnings_5 (test.test_contig_stats.TestContigStats) ... ok test_qc_warnings_6 (test.test_contig_stats.TestContigStats) ... ok test_qc_warnings_7 (test.test_contig_stats.TestContigStats) ... ok test_qc_warnings_8 (test.test_contig_stats.TestContigStats) ... ok test_total_size_1 (test.test_contig_stats.TestContigStats) ... ok test_total_size_2 (test.test_contig_stats.TestContigStats) ... ok test_total_size_3 (test.test_contig_stats.TestContigStats) ... ok test_total_size_4 (test.test_contig_stats.TestContigStats) ... ok test_iro_exact_1 (test.test_iro.TestIro) This test is an exact match for SmST1. ... ok test_iro_exact_33 (test.test_iro.TestIro) This test is an exact match for SmST33. ... ok test_iro_incomplete (test.test_iro.TestIro) This test is an exact match for only one allele. ... ok test_iro_inexact (test.test_iro.TestIro) This test is an inexact match for SmST33. There are single base changes in iroC and in ... ok test_iro_missing_1 (test.test_iro.TestIro) This test is a match for SmST1, except that it's missing iroN. ... ok test_iro_novel (test.test_iro.TestIro) This test is an exact match for alleles, but an unknown combination. ... ok test_iro_random (test.test_iro.TestIro) This test has just random sequence and should give no iro call. ... ok test_o_type_01 (test.test_kaptive.TestKaptive) ... ok test_o_type_02 (test.test_kaptive.TestKaptive) ... ok test_o_type_03 (test.test_kaptive.TestKaptive) ... ok test_o_type_04 (test.test_kaptive.TestKaptive) ... ok test_o_type_05 (test.test_kaptive.TestKaptive) ... ok test_o_type_06 (test.test_kaptive.TestKaptive) ... ok test_o_type_07 (test.test_kaptive.TestKaptive) ... ok test_o_type_08 (test.test_kaptive.TestKaptive) ... ok test_o_type_09 (test.test_kaptive.TestKaptive) ... ok test_o_type_10 (test.test_kaptive.TestKaptive) ... ok test_o_type_11 (test.test_kaptive.TestKaptive) ... ok test_o_type_12 (test.test_kaptive.TestKaptive) ... ok test_o_type_13 (test.test_kaptive.TestKaptive) ... ok test_o_type_14 (test.test_kaptive.TestKaptive) ... ok test_o_type_15 (test.test_kaptive.TestKaptive) ... ok test_o_type_16 (test.test_kaptive.TestKaptive) ... ok test_134 (test.test_mlst.TestMlst) ... ok test_83 (test.test_mlst.TestMlst) ... ok test_ba779 (test.test_mlst.TestMlst) ... ok test_chromosome_exact (test.test_mlst.TestMlst) This test is an exact match for ST23. ... ok test_chromosome_inexact (test.test_mlst.TestMlst) This test is is one base off from ST23 (single substitution in mdh_1 of G to A). ... ok test_chromosome_random (test.test_mlst.TestMlst) This test has just random sequence and should give no MLST call. ... ok test_kp_subspecies_1 (test.test_mlst.TestMlst) ... ok test_kp_subspecies_2 (test.test_mlst.TestMlst) ... ok test_kp_subspecies_3 (test.test_mlst.TestMlst) ... ok test_kp_subspecies_4 (test.test_mlst.TestMlst) ... ok test_kp_subspecies_5 (test.test_mlst.TestMlst) ... ok test_kp_subspecies_6 (test.test_mlst.TestMlst) ... ok test_kp_subspecies_7 (test.test_mlst.TestMlst) ... ok test_ozaenae (test.test_mlst.TestMlst) ... ok test_rhinoscleromatis (test.test_mlst.TestMlst) ... ok test_unknown_ST (test.test_mlst.TestMlst) This test has exact matches for alleles but in an unknown ST combination ... ok test_res_01 (test.test_res_aac.TestResAac) ... /usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/__init__.py:487: ResourceWarning: unclosed file <_io.TextIOWrapper name='/usr/lib/python3/dist-packages/Bio/Align/substitution_matrices/data/BLOSUM62' mode='r' encoding='UTF-8'> matrix = read(path) ResourceWarning: Enable tracemalloc to get the object allocation traceback ok test_res_02 (test.test_res_aac.TestResAac) ... ok test_res_03 (test.test_res_aac.TestResAac) ... ok test_res_04 (test.test_res_aac.TestResAac) This is a tricky one (and the one which first highlighted the problem). The best bit-score ... ok test_res_05 (test.test_res_aac.TestResAac) Same as test_res_04, but with the hit on the other strand. ... ok test_res_01 (test.test_res_alleles.TestResAlleles) ... ok test_res_02 (test.test_res_alleles.TestResAlleles) ... ok test_res_03 (test.test_res_alleles.TestResAlleles) ... ok test_res_04 (test.test_res_alleles.TestResAlleles) ... ok test_res_05 (test.test_res_alleles.TestResAlleles) ... ok test_res_06 (test.test_res_alleles.TestResAlleles) ... ok test_res_07 (test.test_res_alleles.TestResAlleles) ... ok test_res_08 (test.test_res_alleles.TestResAlleles) ... ok test_res_09 (test.test_res_alleles.TestResAlleles) ... ok test_res_10 (test.test_res_alleles.TestResAlleles) ... ok test_res_11 (test.test_res_alleles.TestResAlleles) This test has the ABC-1 gene but with a stop codon in the middle. ... ok test_res_12 (test.test_res_alleles.TestResAlleles) This test has the ABC-1 gene but missing the first (start) codon. ... ok test_res_13 (test.test_res_alleles.TestResAlleles) This test has the ABC-1 gene but at only 50% coverage, so it goes to spurious hits. ... ok test_both_genes_intact (test.test_res_mgrb_pmrb.TestResMgrBPmrB) ... ok test_mgrb_missing (test.test_res_mgrb_pmrb.TestResMgrBPmrB) ... ok test_mgrb_missing_non_kp_complex (test.test_res_mgrb_pmrb.TestResMgrBPmrB) Setting the Kp complex variable to False should turn off the MgrB/PmrB tests. ... ok test_pmrb_early_stop (test.test_res_mgrb_pmrb.TestResMgrBPmrB) This tests an early stop mutation (without a frameshift) in pmrB. ... ok test_pmrb_early_stop_SRR2098701 (test.test_res_mgrb_pmrb.TestResMgrBPmrB) ... ok test_pmrb_frameshift (test.test_res_mgrb_pmrb.TestResMgrBPmrB) A frameshift in pmrB should cause an early stop and lead to a colisitin resistance call. ... ok test_both_genes_intact (test.test_res_omp.TestResOmp) ... ok test_ompk35_early_stop (test.test_res_omp.TestResOmp) This tests an early stop mutation (without a frameshift) in OmpK35. ... ok test_ompk35_frameshift (test.test_res_omp.TestResOmp) A frameshift in OmpK35 should cause an early stop and lead to a carbapenem resistance call. ... ok test_ompk36_missing (test.test_res_omp.TestResOmp) ... ok test_ompk36gd (test.test_res_omp.TestResOmp) ... ok test_ompk36td (test.test_res_omp.TestResOmp) ... ok test_ompk36td_non_kp_complex (test.test_res_omp.TestResOmp) Setting the Kp complex variable to False should turn off the OmpK tests. ... ok test_gyra (test.test_res_qrdr.TestResGyrAParC) ... ok test_gyra_and_parc (test.test_res_qrdr.TestResGyrAParC) ... ok test_gyra_and_parc_non_kp_complex (test.test_res_qrdr.TestResGyrAParC) Setting the Kp complex variable to False should turn off the QRDR tests. ... ok test_no_mutations (test.test_res_qrdr.TestResGyrAParC) ... ok test_parc (test.test_res_qrdr.TestResGyrAParC) ... ok test_tem (test.test_res_tem.TestResTem) ... ok test_rmp_19 (test.test_rmp.TestRmp) This test is an exact match for RmST19, an ST without any truncated alleles. ... ok test_rmp_21 (test.test_rmp.TestRmp) This test is an exact match for RmST21, an ST with a truncated allele. ... ok test_rmp_missing_1 (test.test_rmp.TestRmp) This test is a match for RmST1, except that it's missing rmpC. ... ok test_rmp_novel (test.test_rmp.TestRmp) This test is an exact match for alleles, but an unknown combination. ... ok test_rmp_random (test.test_rmp.TestRmp) This test has just random sequence and should give no rmp call. ... ok test_rmpa2_exact (test.test_rmp.TestRmp) This test has an exact match for rmpA2_1. ... ok test_rmpa2_exact_truncated (test.test_rmp.TestRmp) This test has an exact match for rmpA2_7. ... ok test_rmpa2_inexact (test.test_rmp.TestRmp) This test has an inexact match for rmpA2_1. ... ok test_rmpa2_random (test.test_rmp.TestRmp) This test has just random sequence and should give no rmpA2 call. ... ok test_bla_class_01 (test.test_shv.TestShvMutations) ... ok test_bla_class_02 (test.test_shv.TestShvMutations) ... ok test_bla_class_03 (test.test_shv.TestShvMutations) ... ok test_bla_class_04 (test.test_shv.TestShvMutations) ... ok test_get_class_changing_mutations_01 (test.test_shv.TestShvMutations) ... ok test_get_class_changing_mutations_02 (test.test_shv.TestShvMutations) ... ok test_get_class_changing_mutations_03 (test.test_shv.TestShvMutations) ... ok test_get_class_changing_mutations_04 (test.test_shv.TestShvMutations) ... ok test_get_class_changing_mutations_05 (test.test_shv.TestShvMutations) ... ok test_get_class_changing_mutations_06 (test.test_shv.TestShvMutations) ... ok test_get_class_changing_mutations_07 (test.test_shv.TestShvMutations) ... ok test_get_class_changing_mutations_08 (test.test_shv.TestShvMutations) ... ok test_shv_01 (test.test_shv.TestShvMutations) This test has an exact match for SHV-1. ... ok test_shv_02 (test.test_shv.TestShvMutations) This test has a match for SHV-1 with a mutation at site 238 (G -> Y). This changes the ... ok test_shv_03 (test.test_shv.TestShvMutations) Same as test 2, but the gene is on the reverse strand. ... ok test_shv_04 (test.test_shv.TestShvMutations) This test has a match for SHV-1 with a mutation at site 50 (G -> Y). This doesn't change ... ok test_shv_05 (test.test_shv.TestShvMutations) This test has an exact match for SHV-29. ... ok test_shv_06 (test.test_shv.TestShvMutations) This test has SHV-29 plus an inhibition mutation. ... ok test_shv_07 (test.test_shv.TestShvMutations) This test has SHV-1 with position 238 deleted. Since it's not in the omega loop, this isn't ... ok test_shv_08 (test.test_shv.TestShvMutations) This test has SHV-1 with a synonymous mutation in the omega loop (so not reported). ... ok test_shv_09 (test.test_shv.TestShvMutations) This test has SHV-1 with a nonsynonymous mutation in the omega loop (so it is reported). ... ok test_citrobacter (test.test_species.TestKpComplex) ... ok test_klebsiella_aerogenes (test.test_species.TestKpComplex) ... ok test_klebsiella_africanensis (test.test_species.TestKpComplex) ... ok test_klebsiella_grimontii (test.test_species.TestKpComplex) ... ok test_klebsiella_michiganensis (test.test_species.TestKpComplex) ... ok test_klebsiella_oxytoca (test.test_species.TestKpComplex) ... ok test_klebsiella_pneumoniae (test.test_species.TestKpComplex) ... ok test_klebsiella_quasipneumoniae_subsp_quasipneumoniae (test.test_species.TestKpComplex) ... ok test_klebsiella_quasipneumoniae_subsp_similipneumoniae (test.test_species.TestKpComplex) ... ok test_klebsiella_quasivariicola (test.test_species.TestKpComplex) ... ok test_klebsiella_variicola_subsp_tropicalensis (test.test_species.TestKpComplex) ... ok test_klebsiella_variicola_subsp_variicola (test.test_species.TestKpComplex) ... ok test_raoultella_ornithinolytica (test.test_species.TestKpComplex) ... ok test_raoultella_planticola (test.test_species.TestKpComplex) ... ok test_raoultella_terrigena (test.test_species.TestKpComplex) ... ok test_salmonella (test.test_species.TestKpComplex) ... ok test_citrobacter (test.test_species.TestSpecies) ... ok test_klebsiella_aerogenes (test.test_species.TestSpecies) ... ok test_klebsiella_africana (test.test_species.TestSpecies) ... ok test_klebsiella_grimontii (test.test_species.TestSpecies) ... ok test_klebsiella_indica (test.test_species.TestSpecies) ... ok test_klebsiella_michiganensis (test.test_species.TestSpecies) ... ok test_klebsiella_oxytoca (test.test_species.TestSpecies) ... ok test_klebsiella_pasteurii (test.test_species.TestSpecies) ... ok test_klebsiella_pneumoniae (test.test_species.TestSpecies) ... ok test_klebsiella_quasipneumoniae_subsp_quasipneumoniae (test.test_species.TestSpecies) ... ok test_klebsiella_quasipneumoniae_subsp_similipneumoniae (test.test_species.TestSpecies) ... ok test_klebsiella_quasivariicola (test.test_species.TestSpecies) ... ok test_klebsiella_spallanzanii (test.test_species.TestSpecies) ... ok test_klebsiella_variicola_subsp_tropicalensis (test.test_species.TestSpecies) ... ok test_klebsiella_variicola_subsp_variicola (test.test_species.TestSpecies) ... ok test_raoultella_ornithinolytica (test.test_species.TestSpecies) ... ok test_raoultella_planticola (test.test_species.TestSpecies) ... ok test_raoultella_terrigena (test.test_species.TestSpecies) ... ok test_salmonella (test.test_species.TestSpecies) ... ok test_nothing (test.test_summary.TestResScore) ... ok test_res_counts_1 (test.test_summary.TestResScore) ... ok test_res_counts_10 (test.test_summary.TestResScore) Resistance-by-truncation should add to the class count but not to the gene count (because ... ok test_res_counts_11 (test.test_summary.TestResScore) Spurious hits should not add to either the gene or class counts. ... ok test_res_counts_2 (test.test_summary.TestResScore) ... ok test_res_counts_3 (test.test_summary.TestResScore) Intrinsic Bla genes should not add to the counts. ... ok test_res_counts_4 (test.test_summary.TestResScore) Bla genes in columns other than 'Bla_chr' (e.g. 'Bla_ESBL_acquired') should add to the ... ok test_res_counts_5 (test.test_summary.TestResScore) Bla genes in columns other than 'Bla_chr' (e.g. 'Bla_acquired') should add to the counts. ... ok test_res_counts_6 (test.test_summary.TestResScore) Omp gene truncations should not add to the gene or class counts. ... ok test_res_counts_7 (test.test_summary.TestResScore) Mutations should add to the class count but not to the gene count (because that is for ... ok test_res_counts_8 (test.test_summary.TestResScore) Mutations should add to the class count but not to the gene count (because that is for ... ok test_res_counts_9 (test.test_summary.TestResScore) Mutations should add to the class count but not to the gene count (because that is for ... ok test_res_score_1 (test.test_summary.TestResScore) ... ok test_res_score_2 (test.test_summary.TestResScore) ... ok test_res_score_3 (test.test_summary.TestResScore) ... ok test_res_score_4 (test.test_summary.TestResScore) ... ok test_res_score_5 (test.test_summary.TestResScore) ... ok test_res_score_6 (test.test_summary.TestResScore) ... ok test_res_score_7 (test.test_summary.TestResScore) ... ok test_res_score_8 (test.test_summary.TestResScore) ... ok test_vir_score_1 (test.test_summary.TestResScore) ... ok test_vir_score_2 (test.test_summary.TestResScore) ... ok test_vir_score_3 (test.test_summary.TestResScore) ... ok test_vir_score_4 (test.test_summary.TestResScore) ... ok test_vir_score_5 (test.test_summary.TestResScore) ... ok test_vir_score_6 (test.test_summary.TestResScore) ... ok test_vir_score_7 (test.test_summary.TestResScore) ... ok ---------------------------------------------------------------------- Ran 190 tests in 312.085s OK create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild base:232: /usr/bin/python3 setup.py install --root /build/kleborate-2.0.1/debian/tmp running install running build running build_py package init file 'kaptive/__init__.py' not found (or not a regular file) running egg_info writing Kleborate.egg-info/PKG-INFO writing dependency_links to Kleborate.egg-info/dependency_links.txt writing entry points to Kleborate.egg-info/entry_points.txt writing requirements to Kleborate.egg-info/requires.txt writing top-level names to Kleborate.egg-info/top_level.txt reading manifest file 'Kleborate.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no directories found matching 'kleborate/ICEKp_references' warning: no directories found matching 'kaptive/reference_database' warning: no directories found matching 'kaptive/sample_data' writing manifest file 'Kleborate.egg-info/SOURCES.txt' running install_lib creating /build/kleborate-2.0.1/debian/tmp/usr creating /build/kleborate-2.0.1/debian/tmp/usr/lib creating /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9 creating /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages creating /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate creating /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/version.cpython-39.pyc -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/rmpA.cpython-39.pyc -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/shv_mutations.cpython-39.pyc -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/resBLAST.cpython-39.pyc -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/truncation.cpython-39.pyc -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/blastn.cpython-39.pyc -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/mlstBLAST.cpython-39.pyc -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/species.cpython-39.pyc -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/kaptive.cpython-39.pyc -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/__main__.cpython-39.pyc -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/misc.cpython-39.pyc -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/contig_stats.cpython-39.pyc -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__pycache__/__init__.cpython-39.pyc -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__pycache__ creating /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data creating /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp9.embl -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp8.embl -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp7.embl -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp6.embl -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp5.embl -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp4.embl -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp3.embl -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp2.embl -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp14.embl -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp13.embl -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp12.embl -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp11.embl -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp10.embl -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ICEKp_references/ICEKp1.embl -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ICEKp_references copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/ybt_alleles.fasta -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/wzi.txt -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/wzi.fasta -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/species_mash_sketches.msh -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/rmp_alleles.fasta -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/rmpA2.fasta -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/kpneumoniae.txt -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/iuc_alleles.fasta -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/iro_alleles.fasta -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/clb_alleles.fasta -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/YbST_profiles.txt -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/SmST_profiles.txt -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/RmST_profiles.txt -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/QRDR_120.fasta -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/OmpK.fasta -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/MgrB_and_PmrB.fasta -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/Klebsiella_pneumoniae.fasta -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/CbST_profiles.txt -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/CARD_v3.0.8.fasta -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/CARD_AMR_clustered.csv -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/data/AbST_profiles.txt -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__init__.py -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/__main__.py -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/blastn.py -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/contig_stats.py -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/misc.py -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/mlstBLAST.py -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/resBLAST.py -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/rmpA.py -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/shv_mutations.py -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/species.py -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/truncation.py -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/version.py -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate copying /build/kleborate-2.0.1/.pybuild/cpython3_3.9/build/kleborate/kaptive.py -> /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate byte-compiling /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__init__.py to __init__.cpython-39.pyc byte-compiling /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/__main__.py to __main__.cpython-39.pyc byte-compiling /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/blastn.py to blastn.cpython-39.pyc byte-compiling /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/contig_stats.py to contig_stats.cpython-39.pyc byte-compiling /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/misc.py to misc.cpython-39.pyc byte-compiling /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/mlstBLAST.py to mlstBLAST.cpython-39.pyc byte-compiling /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/resBLAST.py to resBLAST.cpython-39.pyc byte-compiling /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/rmpA.py to rmpA.cpython-39.pyc byte-compiling /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/shv_mutations.py to shv_mutations.cpython-39.pyc byte-compiling /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/species.py to species.cpython-39.pyc byte-compiling /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/truncation.py to truncation.cpython-39.pyc byte-compiling /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/version.py to version.cpython-39.pyc byte-compiling /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/kaptive.py to kaptive.cpython-39.pyc running install_egg_info Copying Kleborate.egg-info to /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/Kleborate-2.0.1.egg-info Skipping SOURCES.txt running install_scripts Installing kleborate script to /build/kleborate-2.0.1/debian/tmp/usr/bin Building BLAST databases with makeblastdb: makeblastdb -dbtype nucl -in /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/CARD_v3.0.8.fasta makeblastdb -dbtype nucl -in /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/clb_alleles.fasta makeblastdb -dbtype nucl -in /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/rmpA2.fasta makeblastdb -dbtype nucl -in /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/iro_alleles.fasta makeblastdb -dbtype nucl -in /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/iuc_alleles.fasta makeblastdb -dbtype nucl -in /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/rmp_alleles.fasta makeblastdb -dbtype nucl -in /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/Klebsiella_pneumoniae.fasta makeblastdb -dbtype nucl -in /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/wzi.fasta makeblastdb -dbtype nucl -in /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/ybt_alleles.fasta makeblastdb -dbtype nucl -in /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/MgrB_and_PmrB.fasta makeblastdb -dbtype nucl -in /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/OmpK.fasta makeblastdb -dbtype nucl -in /build/kleborate-2.0.1/debian/tmp/usr/lib/python3.9/dist-packages/kleborate/data/QRDR_120.fasta  _ __ _ ______ ____ ____ _____ _______ ______ | | / /| | | ____| _ \ / __ \| __ \ /\|__ __| ____| | |/ / | | | |__ | |_) | | | | |__) | / \ | | | |__ | < | | | __| | _ <| | | | _ / / /\ \ | | | __| | |\ \ | |___| |____| |_) | |__| | | \ \/ ____ \| | | |____ |_| \_\|_____|______|____/ \____/|_| \_\/ \_\_| |______|  Kleborate is installed and ready to use! Example commands: kleborate --help kleborate -o results.txt -a *.fasta kleborate --resistance -o results.txt -a *.fasta kleborate --all -o results.txt -a *.fasta debian/rules override_dh_install make[1]: Entering directory '/build/kleborate-2.0.1' dh_install # fasta.nin files will be (re)build at package installation time to not contain build path find debian -name "*.fasta.nin" -delete make[1]: Leaving directory '/build/kleborate-2.0.1' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild debian/rules override_dh_fixperms make[1]: Entering directory '/build/kleborate-2.0.1' dh_fixperms find debian -name "*.msh" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/kleborate-2.0.1' dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'kleborate-examples' in '../kleborate-examples_2.0.1-1_all.deb'. dpkg-deb: building package 'kleborate' in '../kleborate_2.0.1-1_arm64.deb'. dpkg-genbuildinfo --build=binary dpkg-genchanges --build=binary >../kleborate_2.0.1-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/11677 and its subdirectories I: Current time: Wed Aug 11 05:45:26 -12 2021 I: pbuilder-time-stamp: 1628703926 Wed Aug 11 17:45:37 UTC 2021 I: 1st build successful. Starting 2nd build on remote node codethink11-arm64.debian.net. Wed Aug 11 17:45:37 UTC 2021 I: Preparing to do remote build '2' on codethink11-arm64.debian.net. Wed Aug 11 17:51:50 UTC 2021 I: Deleting $TMPDIR on codethink11-arm64.debian.net. Wed Aug 11 17:51:51 UTC 2021 I: kleborate_2.0.1-1_arm64.changes: Format: 1.8 Date: Wed, 09 Dec 2020 01:16:32 +0530 Source: kleborate Binary: kleborate kleborate-examples Architecture: all arm64 Version: 2.0.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: kleborate - tool to screen Klebsiella genome assemblies kleborate-examples - tool to screen Klebsiella genome assemblies (example data) Changes: kleborate (2.0.1-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.1 (routine-update) Checksums-Sha1: 874ed994fe6b7a11f448b64ca9d012fcc9d1450d 5992176 kleborate-examples_2.0.1-1_all.deb c9ae4ce7c1b7aeef781bb643a795db4aaac35155 6543 kleborate_2.0.1-1_arm64.buildinfo df4cc68d1a52fac0db88016cb4a6dc1dddbb20d9 5089804 kleborate_2.0.1-1_arm64.deb Checksums-Sha256: a2170496e0c60e698f550ef9f5f7f927e0182cac865f1b756d7bd1eff5a1ceba 5992176 kleborate-examples_2.0.1-1_all.deb d8bc429464a611e5070164165c27fa191513e664ffdd0d1a5548bf9c84ca35e9 6543 kleborate_2.0.1-1_arm64.buildinfo 533b73acfd46d35a307a357300c2d1faf8823e4c968586eb49cdb8973b71d795 5089804 kleborate_2.0.1-1_arm64.deb Files: d783edaaf7072db86afcf428a9bbee88 5992176 science optional kleborate-examples_2.0.1-1_all.deb 8396beb3dd1bdd1621b3db328313e35d 6543 science optional kleborate_2.0.1-1_arm64.buildinfo 01684666aeaf77e227143544733193de 5089804 science optional kleborate_2.0.1-1_arm64.deb Wed Aug 11 17:51:52 UTC 2021 I: diffoscope 177 will be used to compare the two builds: # Profiling output for: /usr/bin/diffoscope --html /srv/reproducible-results/rbuild-debian/tmp.pQHUs3DCyW/kleborate_2.0.1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/tmp.pQHUs3DCyW/kleborate_2.0.1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/tmp.pQHUs3DCyW/kleborate_2.0.1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/tmp.pQHUs3DCyW/b1/kleborate_2.0.1-1_arm64.changes /srv/reproducible-results/rbuild-debian/tmp.pQHUs3DCyW/b2/kleborate_2.0.1-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.387s) 0.387s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.137s) 0.137s 10 calls diffoscope.comparators.binary.FilesystemFile 0.000s 8 calls abc.DotChangesFile Wed Aug 11 17:51:56 UTC 2021 I: diffoscope 177 found no differences in the changes files, and a .buildinfo file also exists. Wed Aug 11 17:51:56 UTC 2021 I: kleborate from bullseye built successfully and reproducibly on arm64. Wed Aug 11 17:51:58 UTC 2021 I: Submitting .buildinfo files to external archives: Wed Aug 11 17:51:58 UTC 2021 I: Submitting 8.0K b1/kleborate_2.0.1-1_arm64.buildinfo.asc Wed Aug 11 17:52:00 UTC 2021 I: Submitting 8.0K b2/kleborate_2.0.1-1_arm64.buildinfo.asc Wed Aug 11 17:52:01 UTC 2021 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Wed Aug 11 17:52:01 UTC 2021 I: Done submitting .buildinfo files. Wed Aug 11 17:52:01 UTC 2021 I: Removing signed kleborate_2.0.1-1_arm64.buildinfo.asc files: removed './b1/kleborate_2.0.1-1_arm64.buildinfo.asc' removed './b2/kleborate_2.0.1-1_arm64.buildinfo.asc'